SMED30011669
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011669 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 28Note: Hover over icons to view figure legend
Homology
BLAST of SMED30011669 vs. Planmine SMEST
Match: SMESG000068935.1 (SMESG000068935.1) HSP 1 Score: 493.426 bits (1269), Expect = 1.332e-173 Identity = 292/297 (98.32%), Postives = 292/297 (98.32%), Query Frame = 3 Query: 69 MKYFITLWFLICTSTSRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKISNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSMS--NGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVII 953 MKYFITLWFLICTSTSRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKISNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLTTTALPASSATSVATSQITTLLTTTIIPKVPIVIGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM NGSVKAVYTIEVAMNG MTDESLSNNFINATNSAYSS VII Sbjct: 1 MKYFITLWFLICTSTSRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKISNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLTTTALPASSATSVATSQITTLLTTTIIPKVPIVIGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSMRFVNGSVKAVYTIEVAMNGAMTDESLSNNFINATNSAYSSVVII 297 HSP 2 Score: 144.436 bits (363), Expect = 1.554e-38 Identity = 110/302 (36.42%), Postives = 165/302 (54.64%), Query Frame = 3 Query: 639 AQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSMSNGSVKAV--YTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXX------------------XXXXXXXXXXXXXXXXXXXXXKEDPV------KPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIINYLS--SGSVKADMTLNVASTSSLSTTDMQNTVTQAAQATYGSSIQI------------------FSISAKQTSAAPKTQSW 1406 AQPGEYSAS+YLQ+ F+NR+YI +++NV+S ES++ FNEY NI+S L + KIRVVSAV+ +SNGSV + Y +EVA+N TM +L ++F N T S Y +AV+I+NST +++ TS + TT + P+ +PGE+S ++ + F++ TY + TS + F + ++L S IR++ ++N + +GSVKA T+ VA +++ + N A + Y S + I +ISAKQTSAAPKTQSW Sbjct: 31 AQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKISNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLTTTALPASSATSVATSQITTLLTTTIIPKVPIVIGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSMRFVNGSVKAVYTIEVAMNGAMTDESLSNNFINATNSAYSSVVIITNSTVLQTSTLVTSTTAPITISAKQTSAAPKTQSW 332 HSP 3 Score: 111.694 bits (278), Expect = 8.015e-27 Identity = 64/128 (50.00%), Postives = 91/128 (71.09%), Query Frame = 3 Query: 138 PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVIT--KISNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLV 515 P+ + AQPGEYSAS+YLQ+ F+NR+YI +++NV+S ES++ FNEY NI+S L + KIRVVSAV+ + NGSV + Y +EVA+N M +L ++F N T S Y + V+I+NST+L+ TLV Sbjct: 184 PIVIGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSMRFVNGSVKAV--YTIEVAMNGAMTDESLSNNFINATNSAYSSVVIITNSTVLQTSTLV 309
BLAST of SMED30011669 vs. Planmine SMEST
Match: SMESG000068971.1 (SMESG000068971.1) HSP 1 Score: 373.244 bits (957), Expect = 1.613e-119 Identity = 227/472 (48.09%), Postives = 290/472 (61.44%), Query Frame = 3 Query: 138 PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAV---------IIXXXXXXXXXXXXXXXXXXXXXXXXXK----EDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIINYLSSGSVKADMTLNVASTSSLSTTDMQNTVTQAAQATYGSSIQIFSISAKQTSAAPKTQSW 1406 P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +A I+ + T++ + T + T+ T EDP + E SY + + CSFTDETYYDDYKTPTS RYI+FK R H KWKAAL + +RLIEIIIN LSSGSVKADM +N+AS SS+ST D+QNTVTQAAQA YGSS+Q+FSI+A A+ QSW Sbjct: 395 PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTACNYNNYFLATILKSPTLVAANQTTTVSLTATTSLPITTLSIIEDPPRKNERSYKIIIKCSFTDETYYDDYKTPTSARYINFKARHHAKWKAALIFKLLRLIEIIINSLSSGSVKADMEMNIASNSSISTADLQNTVTQAAQAAYGSSLQVFSITATSLDASSTDQSW 835 HSP 2 Score: 216.468 bits (550), Expect = 3.338e-61 Identity = 152/407 (37.35%), Postives = 210/407 (51.60%), Query Frame = 3 Query: 114 SRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISN-STILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 S T + P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+N IL P AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITN + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 119 SPTLVAARPFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYKYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFILNNP--------------------------------------------AQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFIL-------------------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 462 HSP 3 Score: 206.453 bits (524), Expect = 1.451e-57 Identity = 143/378 (37.83%), Postives = 201/378 (53.17%), Query Frame = 3 Query: 198 LNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTLV A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITN + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 1 MTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLVAAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYKYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFIL-------------------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 328
BLAST of SMED30011669 vs. Planmine SMEST
Match: SMESG000068971.1 (SMESG000068971.1) HSP 1 Score: 373.244 bits (957), Expect = 1.669e-119 Identity = 227/472 (48.09%), Postives = 290/472 (61.44%), Query Frame = 3 Query: 138 PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAV---------IIXXXXXXXXXXXXXXXXXXXXXXXXXK----EDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIINYLSSGSVKADMTLNVASTSSLSTTDMQNTVTQAAQATYGSSIQIFSISAKQTSAAPKTQSW 1406 P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +A I+ + T++ + T + T+ T EDP + E SY + + CSFTDETYYDDYKTPTS RYI+FK R H KWKAAL + +RLIEIIIN LSSGSVKADM +N+AS SS+ST D+QNTVTQAAQA YGSS+Q+FSI+A A+ QSW Sbjct: 407 PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTACNYNNYFLATILKSPTLVAANQTTTVSLTATTSLPITTLSIIEDPPRKNERSYKIIIKCSFTDETYYDDYKTPTSARYINFKARHHAKWKAALIFKLLRLIEIIINSLSSGSVKADMEMNIASNSSISTADLQNTVTQAAQAAYGSSLQVFSITATSLDASSTDQSW 847 HSP 2 Score: 231.876 bits (590), Expect = 1.271e-66 Identity = 162/398 (40.70%), Postives = 225/398 (56.53%), Query Frame = 3 Query: 138 PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITNST+L++ TL + + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 261 PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIARPFIL-------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 620 HSP 3 Score: 216.853 bits (551), Expect = 2.686e-61 Identity = 157/407 (38.57%), Postives = 219/407 (53.81%), Query Frame = 3 Query: 114 SRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISN-STILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 S T + P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+N IL P AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITNST+L++ TL + + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 119 SPTLVAARPFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYKYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFILNNP--------------------------------------------AQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIARPFIL-------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 474 HSP 4 Score: 206.453 bits (524), Expect = 1.247e-57 Identity = 143/378 (37.83%), Postives = 201/378 (53.17%), Query Frame = 3 Query: 198 LNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTLV A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITN + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 1 MTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLVAAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYKYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFIL-------------------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 328
BLAST of SMED30011669 vs. Planmine SMEST
Match: SMESG000068971.1 (SMESG000068971.1) HSP 1 Score: 357.451 bits (916), Expect = 1.080e-113 Identity = 220/473 (46.51%), Postives = 281/473 (59.41%), Query Frame = 3 Query: 138 PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISN-STILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAV---------IIXXXXXXXXXXXXXXXXXXXXXXXXXK----EDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIINYLSSGSVKADMTLNVASTSSLSTTDMQNTVTQAAQATYGSSIQIFSISAKQTSAAPKTQSW 1406 P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+N IL P AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +A I+ + T++ + T + T+ T EDP + E SY + + CSFTDETYYDDYKTPTS RYI+FK R H KWKAAL + +RLIEIIIN LSSGSVKADM +N+AS SS+ST D+QNTVTQAAQA YGSS+Q+FSI+A A+ QSW Sbjct: 395 PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFILNNP--------------------------------------------AQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTACNYNNYFLATILKSPTLVAANQTTTVSLTATTSLPITTLSIIEDPPRKNERSYKIIIKCSFTDETYYDDYKTPTSARYINFKARHHAKWKAALIFKLLRLIEIIINSLSSGSVKADMEMNIASNSSISTADLQNTVTQAAQAAYGSSLQVFSITATSLDASSTDQSW 823 HSP 2 Score: 216.468 bits (550), Expect = 3.424e-61 Identity = 152/407 (37.35%), Postives = 210/407 (51.60%), Query Frame = 3 Query: 114 SRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISN-STILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 S T + P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+N IL P AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITN + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 119 SPTLVAARPFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYKYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFILNNP--------------------------------------------AQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFIL-------------------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 462 HSP 3 Score: 206.068 bits (523), Expect = 1.603e-57 Identity = 143/378 (37.83%), Postives = 201/378 (53.17%), Query Frame = 3 Query: 198 LNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTLV A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITN + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 1 MTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLVAAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYKYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNWPFIL-------------------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 328
BLAST of SMED30011669 vs. Planmine SMEST
Match: SMESG000067845.1 (SMESG000067845.1) HSP 1 Score: 231.876 bits (590), Expect = 8.990e-68 Identity = 166/413 (40.19%), Postives = 231/413 (55.93%), Query Frame = 3 Query: 111 TSRTEAQSP------PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 T+ T +SP P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITNST+L++ TL + + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 112 TNSTILKSPTLEIARPFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIARPFIL-------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 486 HSP 2 Score: 229.565 bits (584), Expect = 6.522e-67 Identity = 166/413 (40.19%), Postives = 228/413 (55.21%), Query Frame = 3 Query: 111 TSRTEAQSP------PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 T+ T +SP P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITNST+L++ TL E +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 258 TNSTILKSPTLEIARPFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTL---------------EIATQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 624 HSP 3 Score: 220.32 bits (560), Expect = 1.506e-63 Identity = 142/323 (43.96%), Postives = 185/323 (57.28%), Query Frame = 3 Query: 111 TSRTEAQSP------PVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVII 953 T+ T +SP P L+NPAQPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL +A QPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVII Sbjct: 404 TNSTILKSPTLEIARPFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTL---------------------------------------EIATQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVII 687 HSP 4 Score: 202.216 bits (513), Expect = 6.026e-57 Identity = 147/378 (38.89%), Postives = 209/378 (55.29%), Query Frame = 3 Query: 198 LNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKIS-----------------NGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTLVGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAAQPGEYSASLYLQILFSNRTYIQAFSNVTSSESVSFFNEYYRNINSSLMSNKIRVVSAVVNSM-------------------SNGSVKAVYTIEVAMNGTMTDESLSNNFINATNSAYSSAVIIXXXXXXXXXXXXXXXXXXXXXXXXXKEDPVKPGEHSYAVAMICSFTDETYYDDYKTPTSPRYIDFKGRTHVKWKAALSSRYIRLIEIIIN 1223 + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL A P ++ AQPGEYSAS+ L + F+NR+YIQAF NV S E+ +FFNEYYRNI+S L+ KIR+ SAV+NSM ++ + + ++E+A++ TM E+L+++F N T + + +AVIITNST+L++ TL + + +P +PGE+S ++ ++ +F + +Y + SP +F + + L IR+ +IN Sbjct: 1 MTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIAR-------------------------------PFILNNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTLEIARPFIL-------NNPAQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVIN 340 HSP 5 Score: 138.272 bits (347), Expect = 1.756e-34 Identity = 82/151 (54.30%), Postives = 100/151 (66.23%), Query Frame = 3 Query: 111 TSRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSYIASYANVSSPESLNLFNEYNANISSGLSAYKIRVVSAVITKI-----------------SNGSVFILSDYILEVAINATMDSATLVSSFNNVTFSVYMTAVVISNSTILKEPTL 512 T+ T +SP + ++ QPGEYSASI L + F NRSYI ++ NV SPE+ N FNEY NISSGL YKIR+ SAVI + N S I S+ LE+AI+ATMDS TL SSFNNVTF+V+MTAV+I+NSTILK PTL Sbjct: 550 TNSTILKSPTLEIA--TQPGEYSASINLLMTFANRSYIQAFDNVFSPETANFFNEYYRNISSGLLLYKIRIASAVINSMRFVYNYNIYIDFMDKNYRNASADIYSNISLELAISATMDSETLTSSFNNVTFTVFMTAVIITNSTILKSPTL 698 The following BLAST results are available for this feature:
BLAST of SMED30011669 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30011669 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30011669 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30011669 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30011669 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011669 ID=SMED30011669|Name=SMED30011669|organism=Schmidtea mediterranea sexual|type=transcript|length=1565bpback to top protein sequence of SMED30011669-orf-1 >SMED30011669-orf-1 ID=SMED30011669-orf-1|Name=SMED30011669-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=464bp MKYFITLWFLICTSTSRTEAQSPPVNLSNPAQPGEYSASIYLQLNFTNRSback to top Annotated Terms
The following terms have been associated with this transcript:
|