DNA-directed RNA polymerase II subunit RPB11
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011622 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Human
Match: POLR2J (RNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]) HSP 1 Score: 139.813 bits (351), Expect = 3.746e-43 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Human
Match: POLR2J3 (RNA polymerase II subunit J3 [Source:HGNC Symbol;Acc:HGNC:33853]) HSP 1 Score: 136.346 bits (342), Expect = 7.447e-42 Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECL 365 N P FE F+L EGEK + K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ CL Sbjct: 2 NAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Human
Match: POLR2J3 (RNA polymerase II subunit J3 [Source:HGNC Symbol;Acc:HGNC:33853]) HSP 1 Score: 136.346 bits (342), Expect = 7.447e-42 Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECL 365 N P FE F+L EGEK + K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ CL Sbjct: 2 NAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Human
Match: POLR2J3 (RNA polymerase II subunit J3 [Source:HGNC Symbol;Acc:HGNC:33853]) HSP 1 Score: 136.346 bits (342), Expect = 7.447e-42 Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECL 365 N P FE F+L EGEK + K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ CL Sbjct: 2 NAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Human
Match: POLR2J3 (RNA polymerase II subunit J3 [Source:HGNC Symbol;Acc:HGNC:33853]) HSP 1 Score: 136.346 bits (342), Expect = 7.447e-42 Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECL 365 N P FE F+L EGEK + K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ CL Sbjct: 2 NAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Celegans
Match: rpb-11 (Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]) HSP 1 Score: 129.028 bits (323), Expect = 3.108e-39 Identity = 60/109 (55.05%), Postives = 82/109 (75.23%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L + +KK + EK++KVPN A+FT+ KEDHTLGNM+ QLLK P+V FAGYKNPHPLEH I++R+QTT+NTTP + ++TDL+ E+S +E + +K Sbjct: 2 NAPAAFESFLLLD-DKKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIK 109
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Celegans
Match: rpb-11 (Probable DNA-directed RNA polymerase II subunit RPB11 [Source:UniProtKB/Swiss-Prot;Acc:Q9XVH6]) HSP 1 Score: 129.028 bits (323), Expect = 3.108e-39 Identity = 60/109 (55.05%), Postives = 82/109 (75.23%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L + +KK + EK++KVPN A+FT+ KEDHTLGNM+ QLLK P+V FAGYKNPHPLEH I++R+QTT+NTTP + ++TDL+ E+S +E + +K Sbjct: 2 NAPAAFESFLLLD-DKKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIK 109
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Celegans
Match: rpac-19 (Probable DNA-directed RNA polymerases I and III subunit RPAC2 [Source:UniProtKB/Swiss-Prot;Acc:P34476]) HSP 1 Score: 57.3806 bits (137), Expect = 4.093e-11 Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 3 Query: 120 PNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKEC 362 P+ + +EDHT+GN I + L + +V F GY PHPLE I+ RVQT +EV + + S I +F+E Sbjct: 58 PSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTIRGKFEES 138
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Celegans
Match: rpac-19 (Probable DNA-directed RNA polymerases I and III subunit RPAC2 [Source:UniProtKB/Swiss-Prot;Acc:P34476]) HSP 1 Score: 57.3806 bits (137), Expect = 4.093e-11 Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 3 Query: 120 PNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKEC 362 P+ + +EDHT+GN I + L + +V F GY PHPLE I+ RVQT +EV + + S I +F+E Sbjct: 58 PSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTIRGKFEES 138
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Fly
Match: Rpb11 (gene:FBgn0032634 transcript:FBtr0081011) HSP 1 Score: 135.576 bits (340), Expect = 7.885e-42 Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ E ++KV N A+FT+NKEDHTLGNMI QLLK P V FAGYK PHPLEH +IR+QTT++ +P E F +++TDL++E+S EE+FK+ +K Sbjct: 2 NAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Fly
Match: l(2)37Cg (gene:FBgn0086447 transcript:FBtr0081161) HSP 1 Score: 49.2914 bits (116), Expect = 2.855e-8 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 3 Query: 102 EKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDL 320 EK + T VFT E HTLGN + + ++P+V F GY PHP E + R+Q+ + +++ K L DL Sbjct: 11 EKNGEGSRTFVFT--NEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRA-IDILKRGLEDL 80
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Fly
Match: l(2)37Cg (gene:FBgn0086447 transcript:FBtr0332577) HSP 1 Score: 49.2914 bits (116), Expect = 3.561e-8 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 3 Query: 102 EKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDL 320 EK + T VFT E HTLGN + + ++P+V F GY PHP E + R+Q+ + +++ K L DL Sbjct: 22 EKNGEGSRTFVFT--NEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRGLEDL 91
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Fly
Match: l(2)37Cg (gene:FBgn0086447 transcript:FBtr0336628) HSP 1 Score: 49.2914 bits (116), Expect = 4.785e-8 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 3 Query: 102 EKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDL 320 EK + T VFT E HTLGN + + ++P+V F GY PHP E + R+Q+ + +++ K L DL Sbjct: 38 EKNGEGSRTFVFT--NEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD-RAIDILKRGLEDL 107
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Zebrafish
Match: polr2j (polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]) HSP 1 Score: 139.813 bits (351), Expect = 2.545e-43 Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FTLNKEDHTLGN+I QLLK P+V FAGYK PHPLEH ++IRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Zebrafish
Match: polr1d (RNA polymerase I and III subunit D [Source:NCBI gene;Acc:445412]) HSP 1 Score: 56.225 bits (134), Expect = 9.672e-11 Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 3 Query: 135 FTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 F LN+EDHTLGN + Y ++K V F GY HP E I R+QT E ++ L +L ++ + F+ +K Sbjct: 25 FVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFEARMK 102
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Zebrafish
Match: AL844570.1 (pep chromosome:GRCz11:CHR_ALT_CTG14_1_3:9079125:9083658:-1 gene:ENSDARG00000110760.1 transcript:ENSDART00000181010.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL844570.1) HSP 1 Score: 55.4546 bits (132), Expect = 1.655e-10 Identity = 27/75 (36.00%), Postives = 39/75 (52.00%), Query Frame = 3 Query: 135 FTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKE 359 F LN+EDHTLGN + Y ++K V F GY HP E I R+QT E ++ L +L ++ + F+ Sbjct: 20 FVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFER 94
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Zebrafish
Match: AL844570.1 (pep chromosome:GRCz11:CHR_ALT_CTG14_1_3:9082721:9085434:-1 gene:ENSDARG00000110760.1 transcript:ENSDART00000185801.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AL844570.1) HSP 1 Score: 54.299 bits (129), Expect = 3.890e-10 Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 3 Query: 135 FTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFK 356 F LN+EDHTLGN + Y ++K V F GY HP E I R+QT E ++ L +L ++ + F+ Sbjct: 19 FVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTDVCKHVLQTFE 92
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Xenopus
Match: tmem231 (transmembrane protein 231 [Source:Xenbase;Acc:XB-GENE-1011804]) HSP 1 Score: 141.354 bits (355), Expect = 1.009e-43 Identity = 67/109 (61.47%), Postives = 86/109 (78.90%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHT+GN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ C+K Sbjct: 2 NAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVCIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Xenopus
Match: tmem231 (transmembrane protein 231 [Source:Xenbase;Acc:XB-GENE-1011804]) HSP 1 Score: 138.658 bits (348), Expect = 8.986e-43 Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHT+GN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Xenopus
Match: tmem231 (transmembrane protein 231 [Source:Xenbase;Acc:XB-GENE-1011804]) HSP 1 Score: 137.502 bits (345), Expect = 3.231e-42 Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFK 356 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHT+GN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ Sbjct: 2 NAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 106
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Xenopus
Match: tial1 (TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:Xenbase;Acc:XB-GENE-958519]) HSP 1 Score: 65.0846 bits (157), Expect = 5.435e-14 Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 3 Query: 75 GEGEKKVHFEKESKVPN---TAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECL 365 E E+K E N F L++EDHTLGN + Y ++K+P + F GY HP E I R+QT + +E F+ LT+L+ ++ F+ C+ Sbjct: 3 AEAERKTALEMVQAQGNDESCVTFVLHEEDHTLGNSLRYMVMKNPDIEFCGYSITHPSETKINFRIQTRNGIPAVEPFRRGLTELVDVCQHVLNTFEVCV 102
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Xenopus
Match: tial1 (TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:Xenbase;Acc:XB-GENE-958519]) HSP 1 Score: 64.6994 bits (156), Expect = 1.259e-13 Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 87 KKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 + +H + + + F L++EDHTLGN + Y ++K+P + F GY HP E I R+QT + +E F+ LT+L+ ++ F+ +K Sbjct: 24 RLIHVQAQGNDESCVTFVLHEEDHTLGNSLRYMVMKNPDIEFCGYSITHPSETKINFRIQTRNGIPAVEPFRRGLTELVDVCQHVLNTFEASIK 117
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Mouse
Match: Polr2j (polymerase (RNA) II (DNA directed) polypeptide J [Source:MGI Symbol;Acc:MGI:109582]) HSP 1 Score: 139.813 bits (351), Expect = 2.572e-43 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Mouse
Match: Polr2j (polymerase (RNA) II (DNA directed) polypeptide J [Source:MGI Symbol;Acc:MGI:109582]) HSP 1 Score: 137.887 bits (346), Expect = 1.093e-42 Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFK 356 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ Sbjct: 2 NAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 106
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Mouse
Match: Polr2j (polymerase (RNA) II (DNA directed) polypeptide J [Source:MGI Symbol;Acc:MGI:109582]) HSP 1 Score: 88.5817 bits (218), Expect = 1.582e-23 Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKK------------------------------QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 80
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Mouse
Match: Polr1d (polymerase (RNA) I polypeptide D [Source:MGI Symbol;Acc:MGI:108403]) HSP 1 Score: 64.3142 bits (155), Expect = 1.376e-13 Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 3 Query: 72 LGEGEKKVHFEKESKVP---NTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 + EGE+K E F L++EDHTLGN + Y ++K+P+V F GY HP E I +R+QT +E F+ L +L++ ++ +F+ +K Sbjct: 18 MAEGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIK 119
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. UniProt/SwissProt
Match: sp|O08740|RPB11_MOUSE (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.446e-42 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. UniProt/SwissProt
Match: sp|P52435|RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.799e-42 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. UniProt/SwissProt
Match: sp|Q32P79|RPB11_BOVIN (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.799e-42 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. UniProt/SwissProt
Match: sp|Q7PVQ9|RPB11_ANOGA (DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae OX=7165 GN=Rpb11 PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.768e-41 Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ E + KVPN A+FT+NKEDHTLGNMI QLLK P V FAGYK PHPLEH ++R+QTTS +P E F +++TDL+SE+S EE+F+E +K Sbjct: 2 NAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. UniProt/SwissProt
Match: sp|Q9H1A7|RPB1C_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens OX=9606 GN=POLR2J3 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.439e-41 Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECL 365 N P FE F+L EGEK + K++KVPN +FT+NKEDHTLGN+I QLLK P+V FAGYK PHPLEH IIIRVQTT + +P E F +++TDLISE+S +EE+F+ CL Sbjct: 2 NAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. TrEMBL
Match: A0A0R3SKE0 (RNA_pol_L_2 domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS5403 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.177e-47 Identity = 74/109 (67.89%), Postives = 89/109 (81.65%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKKV EK++ VPN AVFTLN+EDHTLGNMIT QLLK P+V FAGYK PHPLEH ++IRVQTT++ TP+EVF ++ DLISEIS+IEEQF+ +K Sbjct: 2 NAPASFESFLLVEGEKKVFIEKDTHVPNAAVFTLNREDHTLGNMITRQLLKDPRVLFAGYKIPHPLEHRVVIRVQTTASVTPVEVFSSAIRDLISEISSIEEQFRSTIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. TrEMBL
Match: A0A504YB91 (DNA-directed RNA polymerase II subunit J OS=Fasciola gigantica OX=46835 GN=FGIG_12293 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.250e-47 Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L +GEKK+ FEK+++VPN A+FTLN+EDHT+GNMIT QLLK P+V FAGYK PHPLEH I+IRVQT + TTP++ F +L DLISE+SNIEEQFK K Sbjct: 2 NAPASFEPFLLADGEKKISFEKDTQVPNAAIFTLNREDHTVGNMITCQLLKDPRVLFAGYKAPHPLEHKIVIRVQTAATTTPLDAFVSALKDLISEVSNIEEQFKMATK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. TrEMBL
Match: A0A4E0S2R9 (DNA-directed RNA polymerase II subunit J OS=Fasciola hepatica OX=6192 GN=D915_002773 PE=4 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 2.250e-47 Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L +GEKK+ FEK+++VPN A+FTLN+EDHT+GNMIT QLLK P+V FAGYK PHPLEH I+IRVQT + TTP++ F +L DLISE+SNIEEQFK K Sbjct: 2 NAPASFEPFLLADGEKKISFEKDTQVPNAAIFTLNREDHTVGNMITCQLLKDPRVLFAGYKAPHPLEHKIVIRVQTAATTTPLDAFVSALKDLISEVSNIEEQFKMATK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. TrEMBL
Match: A0A0R3TL64 (RNA_pol_L_2 domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS7959 PE=4 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 4.246e-47 Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKKV EK++ VPN AVFTLN+EDHTLGNMIT QLLK P+V FAGYK PHPLEH ++IRVQTTS TP EVF ++ DL+SEIS+IEEQF+ +K Sbjct: 2 NAPASFESFLLVEGEKKVFIEKDTHVPNAAVFTLNREDHTLGNMITRQLLKDPRVLFAGYKIPHPLEHRVVIRVQTTSAVTPAEVFSSAIRDLVSEISSIEEQFRSTIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. TrEMBL
Match: V4C8A9 (RNA_pol_L_2 domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_182011 PE=4 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.304e-46 Identity = 72/109 (66.06%), Postives = 90/109 (82.57%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ EK++KVPN A+FT+NKEDHTLGNMIT QLLK P+V FAGYKNPHPLEH ++R+QTTS+ +P E F +++TDLISEIS +EE+FKE +K Sbjct: 2 NAPPTFEAFLLFEGEKKITIEKDTKVPNAALFTVNKEDHTLGNMITTQLLKDPQVLFAGYKNPHPLEHKFVVRIQTTSDYSPQEAFTNAITDLISEISLLEERFKESVK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Cavefish
Match: polr2j (RNA polymerase II subunit J [Source:NCBI gene;Acc:103025271]) HSP 1 Score: 140.198 bits (352), Expect = 1.377e-43 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FTLNKEDHTLGN+I QLLK P+V FAGYK PHPLEH I+IRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 2 NAPPAFESFLLFEGEKKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Cavefish
Match: polr1d (DNA-directed RNA polymerases I and III subunit RPAC2-like [Source:NCBI gene;Acc:103043816]) HSP 1 Score: 60.077 bits (144), Expect = 4.305e-12 Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 3 Query: 135 FTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKE 359 F L++EDHTLGN + Y ++K+P V F GY HP E I R+QT E + L DL ++ F+E Sbjct: 27 FVLHEEDHTLGNSLRYMVMKNPDVEFCGYSITHPSESKINFRIQTRGGLPATETLRKGLNDLTDASKHVLHTFEE 101
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Cavefish
Match: polr1d (DNA-directed RNA polymerases I and III subunit RPAC2-like [Source:NCBI gene;Acc:103043816]) HSP 1 Score: 59.3066 bits (142), Expect = 5.582e-12 Identity = 31/79 (39.24%), Postives = 41/79 (51.90%), Query Frame = 3 Query: 135 FTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNI----EEQFKE 359 F L++EDHTLGN + Y ++K+P V F GY HP E I R+QT E + L DL ++ E Q KE Sbjct: 27 FVLHEEDHTLGNSLRYMVMKNPDVEFCGYSITHPSESKINFRIQTRGGLPATETLRKGLNDLTDASKHVLHTFEAQVKE 105
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Sea Lamprey
Match: polr1d (RNA polymerase I and III subunit D [Source:NCBI gene;Acc:445412]) HSP 1 Score: 57.3806 bits (137), Expect = 6.628e-12 Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 3 Query: 78 EGEKKVHFEKESKVPN--TAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFK 356 EG ++ +S V + F LN EDHTLGN + Y ++K+P V F GY HP E I R+Q T ++ F+ L +L + +I F+ Sbjct: 6 EGRQRCLSAIQSDVDDDTCVTFVLNGEDHTLGNPLRYMVMKNPDVDFCGYSVTHPSEDKINFRIQ-TRGIPAVDTFRRGLCELTTVCEHILAAFE 99
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Yeast
Match: RPB11 (RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit [Source:SGD;Acc:S000005365]) HSP 1 Score: 95.9005 bits (237), Expect = 5.135e-27 Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFK 356 N PD+FE+F+LGEGE K+ + ++K PN V T KEDHTLGN+I +LL KV FA YK HP +R+QTT P + K++ +I+++ ++ F+ Sbjct: 2 NAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Yeast
Match: RPC19 (RNA polymerase subunit AC19; common to RNA polymerases I and III [Source:SGD;Acc:S000005057]) HSP 1 Score: 72.0182 bits (175), Expect = 2.057e-17 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 111 SKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 S+ +A F + +EDHTLGN + Y ++K+P V F GY PHP E+ + IR+QT TT ++ + L DL+ +E +F E +K Sbjct: 55 SEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIK 140
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Nematostella
Match: EDO37254 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGE2]) HSP 1 Score: 130.183 bits (326), Expect = 3.971e-40 Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P+ FE F+L +G+KK+ K++KVPN A F +NKEDHTLGN++ QLLK P+V FAGYK HPLEH ++RVQTTS+ +P E F ++TDLISE+S +EE+FK ++ Sbjct: 2 NAPEPFEPFLLLDGDKKITITKDTKVPNAAHFVVNKEDHTLGNLLREQLLKDPQVIFAGYKVSHPLEHKFVLRVQTTSDYSPQEAFTHAITDLISEVSLLEERFKAAVR 110
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Nematostella
Match: EDO38993 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SBE9]) HSP 1 Score: 58.151 bits (139), Expect = 3.406e-12 Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 3 Query: 135 FTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLIS 326 F L+ EDHTLGN + Y ++K+P V+F GY PHP E I +R+Q T T +V + L++L + Sbjct: 7 FVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQ-THGTPASDVLRRGLSELTA 69
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Medaka
Match: polr2j (RNA polymerase II subunit J [Source:NCBI gene;Acc:101172727]) HSP 1 Score: 141.739 bits (356), Expect = 7.928e-44 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 3 Query: 42 NLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 N P FE F+L EGEKK+ K++KVPN +FTLNKEDHTLGN+I QLLK P+V FAGYK PHPLEH I+IRVQTT + +P E F +++TDLISE+S +EE+F+ +K Sbjct: 26 NAPPAFESFLLFEGEKKISISKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIK 134
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Medaka
Match: polr1d (DNA-directed RNA polymerases I and III subunit RPAC2 [Source:NCBI gene;Acc:101162457]) HSP 1 Score: 62.3882 bits (150), Expect = 3.976e-13 Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 3 Query: 69 VLGEGEKKVHFE---KESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDL 320 + G+GEKK E + + F ++ EDHTLGN + Y ++K+P V F GY HP E I R+QT +E + L+DL Sbjct: 1 MAGDGEKKPKLEMVQADGAQEDCVTFVMHDEDHTLGNSLRYMIMKNPDVDFCGYTITHPSESKINFRIQTRGGVPAVEPLQKGLSDL 87
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Medaka
Match: polr1d (DNA-directed RNA polymerases I and III subunit RPAC2 [Source:NCBI gene;Acc:101162457]) HSP 1 Score: 61.6178 bits (148), Expect = 1.475e-12 Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 3 Query: 69 VLGEGEKKVHFE---KESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDL 320 + G+GEKK E + + F ++ EDHTLGN + Y ++K+P V F GY HP E I R+QT +E + L+DL Sbjct: 1 MAGDGEKKPKLEMVQADGAQEDCVTFVMHDEDHTLGNSLRYMIMKNPDVDFCGYTITHPSESKINFRIQTRGGVPAVEPLQKGLSDL 87
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Planmine SMEST
Match: SMESG000055029.1 (SMESG000055029.1) HSP 1 Score: 228.794 bits (582), Expect = 7.499e-79 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 3 Query: 36 MSNLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 368 MSNLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK Sbjct: 1 MSNLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQLLKHPKVRFAGYKNPHPLEHCIIIRVQTTSNTTPMEVFKDSLTDLISEISNIEEQFKECLK 111 The following BLAST results are available for this feature:
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of DNA-directed RNA polymerase II subunit RPB11 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011622 ID=SMED30011622|Name=DNA-directed RNA polymerase II subunit RPB11|organism=Schmidtea mediterranea sexual|type=transcript|length=436bpback to top protein sequence of SMED30011622-orf-1 >SMED30011622-orf-1 ID=SMED30011622-orf-1|Name=SMED30011622-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=112bp MSNLPDKFEIFVLGEGEKKVHFEKESKVPNTAVFTLNKEDHTLGNMITYQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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