Exonuclease 3'-5' domain-containing protein 1

Overview
NameExonuclease 3'-5' domain-containing protein 1
Smed IDSMED30011566
Length (bp)1972
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Exonuclease 3'-5' domain-containing protein 1 (SMED30011566) t-SNE clustered cells

Violin plots show distribution of expression levels for Exonuclease 3'-5' domain-containing protein 1 (SMED30011566) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Exonuclease 3'-5' domain-containing protein 1 (SMED30011566) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Exonuclease 3'-5' domain-containing protein 1 (SMED30011566) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011566

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30011566SMESG000028883.1 dd_Smed_v4_7434_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30011566SMESG000028883.1 dd_Smed_v4_7434_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30011566SMESG000028883.1 dd_Smed_v4_7434_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011566SMESG000028883.1 Contig52171newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011566SMESG000028883.1 Contig52171uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Celegans
Match: egal-1 (Egalitarian protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q17902])

HSP 1 Score: 49.6766 bits (117), Expect = 6.929e-6
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 2 
Query:  188 FLKQYPSLFQTEA-EFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQ-SLFTAFLMRHSHVFEIQGELVGLKD 556
            FL+ +PSLF  E  + +    +D +  + PL  + I S  +               E EAV +F + L K   + + IKSL GH SQA+  +RLV G     F  FL      F ++G+ V LK+
Sbjct:   55 FLQGHPSLFTVEGDQVILNGHNDLNAKNNPLLQSGIRSRNY---------------EKEAVDFFVTKLTKFGPE-LQIKSLLGHRSQAAPEVRLVSGRHLKEFCEFLQSQVDYFVVEGDRVRLKN 163
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Celegans
Match: egal-1 (Egalitarian protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q17902])

HSP 1 Score: 49.6766 bits (117), Expect = 6.929e-6
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 2 
Query:  188 FLKQYPSLFQTEA-EFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQ-SLFTAFLMRHSHVFEIQGELVGLKD 556
            FL+ +PSLF  E  + +    +D +  + PL  + I S  +               E EAV +F + L K   + + IKSL GH SQA+  +RLV G     F  FL      F ++G+ V LK+
Sbjct:   55 FLQGHPSLFTVEGDQVILNGHNDLNAKNNPLLQSGIRSRNY---------------EKEAVDFFVTKLTKFGPE-LQIKSLLGHRSQAAPEVRLVSGRHLKEFCEFLQSQVDYFVVEGDRVRLKN 163
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Celegans
Match: egal-1 (Egalitarian protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q17902])

HSP 1 Score: 49.2914 bits (116), Expect = 7.851e-6
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 2 
Query:  188 FLKQYPSLFQTEA-EFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQ-SLFTAFLMRHSHVFEIQGELVGLKD 556
            FL+ +PSLF  E  + +    +D +  + PL  + I S  +               E EAV +F + L K   + + IKSL GH SQA+  +RLV G     F  FL      F ++G+ V LK+
Sbjct:   55 FLQGHPSLFTVEGDQVILNGHNDLNAKNNPLLQSGIRSRNY---------------EKEAVDFFVTKLTKFGPE-LQIKSLLGHRSQAAPEVRLVSGRHLKEFCEFLQSQVDYFVVEGDRVRLKN 163
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Celegans
Match: egal-1 (Egalitarian protein homolog [Source:UniProtKB/Swiss-Prot;Acc:Q17902])

HSP 1 Score: 49.2914 bits (116), Expect = 7.851e-6
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 2 
Query:  188 FLKQYPSLFQTEA-EFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQ-SLFTAFLMRHSHVFEIQGELVGLKD 556
            FL+ +PSLF  E  + +    +D +  + PL  + I S  +               E EAV +F + L K   + + IKSL GH SQA+  +RLV G     F  FL      F ++G+ V LK+
Sbjct:   55 FLQGHPSLFTVEGDQVILNGHNDLNAKNNPLLQSGIRSRNY---------------EKEAVDFFVTKLTKFGPE-LQIKSLLGHRSQAAPEVRLVSGRHLKEFCEFLQSQVDYFVVEGDRVRLKN 163
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. TrEMBL
Match: A0A0R3X865 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS9725 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.242e-62
Identity = 158/445 (35.51%), Postives = 237/445 (53.26%), Query Frame = 2 
Query:   56 ALYFLEMLY-SKGPLPLNLIAEVYQSKIFPHQALSYDNLINETVLFLKQYPSLFQTEAEFVF--------PASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKD----NFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECN--LANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEAD 1345
            +LY +E+L  + G LP   + + +  + FPH   ++DN  ++   F+   P LF  +  ++F        P +   +  +   P  ++H S      RL     D A E+EAVKYFQ  + ++ + W+PIKSLAGHLSQAS NIR V+G QS F  FL+RH  +FE+QG+LV L+D    N++  ++     +G R+ +      S  +       +                  N +  V S+  + N  +  +       S TI +S +DY   M+L   I+ +    ++C   L +LM   V ++  NI S VG TQIE+ E+L K    F+I       +     ++   +     +S +    +ISL N+KGI Y +++ WGIIDLGQHEHVFFD+S+FK++ENL K+F +GE + FNAVLA K+SRAKWRATRVWKE D
Sbjct:    6 SLYLMEILMQANGTLPFEDVWQYFLLQ-FPH---TWDNF-HDFEAFVHSQPMLFGVQNNYIFLKDTQAVDPIAFVPTDFNPVFPLTHVHVSPLPPPPRL-FHAQDFASEAEAVKYFQKQISRRNEPWVPIKSLAGHLSQASANIRAVVGPQSDFLYFLLRHPRIFEVQGDLVSLRDEVRLNYLPRQTTQIRQSGSRRNRPLSMFVSSGIYPPTQGVNGMA--------------ENSSITVHSSHSVQNLPQHSQMSEQMSASQTILISLVDYAAAMWLRQVIEKLGGN-KDCGVLLEDLMQEFV-SAPVNIRSSVGQTQIEVTEFLEKFNQLFEI----DQVMCKNKVLDKASTTFVISDSTNANSRSISLINKKGIAYCISRSWGIIDLGQHEHVFFDRSLFKHVENLTKHFVVGETLCFNAVLAPKESRAKWRATRVWKETD 424
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. TrEMBL
Match: A0A0R3UK91 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS7984 PE=4 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 3.160e-62
Identity = 169/488 (34.63%), Postives = 246/488 (50.41%), Query Frame = 2 
Query:  353 ESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETA-RECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQDNNNLLSKN--PSDIGNFSTVGLIMPXXXXXXXXXXXXXXXKQNL----SKNIV----NGFDKM--------------------HCD--SEDENTMQSIQSIGIEEDLSVKCHLEKNNNNSFSLDRSLINCNIGTQTLSTGEIMAMHFYHD 1717
            E+EAVKYFQ  + ++ + WIPIKSLAGHLSQAS +IR V+G QS F +FL+RH  VFE+QG+LV L+D+   N     + + R+         S  + S       +   +          ++++NP          +S +  GE   ++  TI +S +DY  +M+L  T+     ++ R   L  LM  ++ ++  N+    G+TQIE+ E+L K +  F++ + A        +          ++S   +   +SL NRKG+ Y VAK WGIIDLGQHEHVFFD+S+FK++ENL K+F +GE +YFNA+LA K+SRAKWRAT VWKE+D    Q +  +L     PS     S  G+           D+      + L      N+V     G DK+                    H D  S D NTM  I SI     L    H + +N    +   S ++   GTQT STG+I+A   YH+
Sbjct:  104 ETEAVKYFQRQISRRNETWIPIKSLAGHLSQASPSIRAVVGPQSDFMSFLLRHPRVFEVQGDLVSLRDDLKLNLLLRPTSHFRQSASRRNRPQSMLIPSPPCAVHGAIGISDYLNIHPLTLQSSQNPAHY------QSSSVSPGEQ--KSPFTIFISVLDYVAVMWLRKTLNKFGGSSKRGVPLQTLMQELI-SAPKNVRDATGWTQIEVTEFLSKFSQLFEVDELACKNKLLDKSNTTF----VIVDSTGTDSNVLSLVNRKGVAYCVAKSWGIIDLGQHEHVFFDRSLFKHVENLTKHFTVGETLYFNAILAPKESRAKWRATHVWKESDVLAAQLSGLVLPTEHCPSSSEENSDSGVQDATVKKSPTADYNAAPDFEKLLIDPEFNVVRLDTTGTDKLLILQEPENIADSDDDELGGEHSDRSSSDLNTMSDIPSIS--SCLPDAGHAQGSNA---APGESFVSS--GTQTYSTGDILAKQVYHE 571
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. TrEMBL
Match: A0A068W9X0 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EgrG_000888000 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.020e-61
Identity = 158/444 (35.59%), Postives = 247/444 (55.63%), Query Frame = 2 
Query:   56 ALYFLEMLY-SKGPLPLNLIAEVYQSKIFPHQALSYDNLIN-------ETVLFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKD----NFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECN--LANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEAD 1345
            +LY +E+L  + G LPL  + + +  + FPH   ++DN  +       +++LF  Q   +F  + + +   +   +  +   P   +H        R+ +   D   E+EAVKYFQ  + ++ + W+PIKSLAGHLSQAS NIR V+G QS F  FL+RH  +FE+QG+LV L+D    N++S +S     NG R+ +      S  + S   + +++++ ++ +       +N     +MS  +           N++Q   TI +S +DY   M+L   I+ +  T ++C   L +LM   V ++  NI + VG T+IE+ E+L K    F+I       +     ++   +     +S S    +ISL N+KGI Y +++ WGIIDLGQHEHVFFD+S+FK++ENL K+F +GE + FNAVLA K+SRAKWRATRVWKE D
Sbjct:    6 SLYLMEILIQANGTLPLEDVWQYFLMQ-FPH---TWDNFPDFEAFVHSQSMLFGVQNNYVFLKDTQAIDSIAYYRNDFNPVFPLTQVHVGPLPPPPRI-LHAQDFTAEAEAVKYFQRQISRRNEPWVPIKSLAGHLSQASANIRAVVGPQSDFLYFLLRHPRIFEVQGDLVSLRDEVRLNYLSRQSTQIRQNGSRRNRPLSMYVSSGICSLPQSKNETSEYSNVSVYSSQSVQNLPQQTLMSEQL-----------NSSQ---TILISLVDYAAAMWLRQAIEKLGGT-KDCGVLLDDLMQEFV-SAPVNIRNSVGLTRIEVTEFLEKFNQLFEI----DQIMCKNKVLDKASTTFIISDSASANSRSISLINKKGIAYCISRSWGIIDLGQHEHVFFDRSLFKHVENLTKHFAVGETLCFNAVLAPKESRAKWRATRVWKETD 424
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. TrEMBL
Match: W6V180 (Uncharacterized protein OS=Echinococcus granulosus OX=6210 GN=EGR_00622 PE=4 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.579e-61
Identity = 158/444 (35.59%), Postives = 247/444 (55.63%), Query Frame = 2 
Query:   56 ALYFLEMLY-SKGPLPLNLIAEVYQSKIFPHQALSYDNLIN-------ETVLFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKD----NFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECN--LANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEAD 1345
            +LY +E+L  + G LPL  + + +  + FPH   ++DN  +       +++LF  Q   +F  + + +   +   +  +   P   +H        R+ +   D   E+EAVKYFQ  + ++ + W+PIKSLAGHLSQAS NIR V+G QS F  FL+RH  +FE+QG+LV L+D    N++S +S     NG R+ +      S  + S   + +++++ ++ +       +N     +MS  +           N++Q   TI +S +DY   M+L   I+ +  T ++C   L +LM   V ++  NI + VG T+IE+ E+L K    F+I       +     ++   +     +S S    +ISL N+KGI Y +++ WGIIDLGQHEHVFFD+S+FK++ENL K+F +GE + FNAVLA K+SRAKWRATRVWKE D
Sbjct:    6 SLYLMEILIQANGTLPLEDVWQYFLMQ-FPH---TWDNFPDFEAFVHSQSMLFGVQNNYVFLKDTQAIDSIAYYRNDFNPVFPLTQVHVGPLPPPPRI-LHAQDFTAEAEAVKYFQRQISRRNEPWVPIKSLAGHLSQASANIRAVVGPQSDFLYFLLRHPRIFEVQGDLVSLRDEVRLNYLSRQSTQIRQNGSRRNRPLSMYVSSGICSLPQSKNETSEYSNVSVYSSQSVQNLPQQTLMSEQL-----------NSSQ---TILISLVDYAAAMWLRQAIEKLGGT-KDCGVLLDDLMQEFV-SAPVNIRNSVGLTRIEVTEFLEKFNQLFEI----DQIMCKNKVLDKASTTFIISDSASANSRSISLINKKGIAYCISRSWGIIDLGQHEHVFFDRSLFKHVENLTKHFAVGETLCFNAVLAPKESRAKWRATRVWKETD 424
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. TrEMBL
Match: A0A0R3W4A3 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS4834 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.262e-61
Identity = 155/444 (34.91%), Postives = 233/444 (52.48%), Query Frame = 2 
Query:   56 ALYFLEMLY-SKGPLPLNLIAEVYQSKIFPHQALSYDNLINETVLFLKQYPSLFQTEAEFVF---PASSDNSCHSEP-----LPTNNIHSSRFINNRRLSVD-DYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKD----NFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEAD 1345
            +LY +E+L  + G LP     + +  + FPH   ++DN  +    F+   P LF  +  +VF     S D++ +         P   +H S         +    D   E+EAVKYFQ  + ++ + W+PIKSLAGHLSQAS NIR V+G QS F  FL+RH  +FE+QG+LV L+D    N++S +S     NG R+ +      S  +       ++                 N N  V S+  + N S+     +   +S TI +S +DY   M+L   I+ +  T     L + ++    ++  N+ + VG T+IE+  +L K    F+I       +     ++   +     +S +    +ISL N+KGI Y +++ WGIIDLGQHEHVFFD+S+FK++ENL K+F +GE + FNAVLA K+SRAKWRATRVWKE D
Sbjct:    6 SLYLMELLMQTNGSLPFEDAWQYFLMQ-FPH---TWDNFPDFEA-FVHSQPMLFGVQNNYVFLKDAQSVDSTAYVSTDFNPVFPLTQVHVSPLPPPPPPRLPYAQDFTAEAEAVKYFQRQISRRNEPWVPIKSLAGHLSQASANIRAVVGPQSDFLYFLLRHPRIFEVQGDLVSLRDEVRLNYLSRQSAQIRQNGNRRNRPLSMFVSSGIFPPSQGVNEM--------------SENLNVSVHSSQSVQNLSQQSLLSDQLNSSQTILISLVDYAAAMWLRQAIEKLGGTKDSGVLLDDLMQEFVSAPVNVRNSVGLTRIEVTGFLEKFNQLFEI----DQVMCKNKVLDKASTTFVISDSTNANSRSISLINKKGIAYCISRSWGIIDLGQHEHVFFDRSLFKHVENLTKHFAVGETLCFNAVLAPKESRAKWRATRVWKETD 426
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Planmine SMEST
Match: SMESG000028883.1 (SMESG000028883.1)

HSP 1 Score: 995.342 bits (2572), Expect = 0.000e+0
Identity = 565/566 (99.82%), Postives = 565/566 (99.82%), Query Frame = 2 
Query:   32 MAEHNLQLALYFLEMLYSKGPLPLNLIAEVYQSKIFPHQALSYDNLINETVLFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQDNNNLLSKNPSDIGNFSTVGLIMPXXXXXXXXXXXXXXXKQNLSKNIVNGFDKMHCDSEDENTMQSIQSIGIEEDLSVKCHLEKNNNNSFSLDRSLINCNIGTQTLSTGEIMAMHFYHDHSDS 1729
            MAEHNLQLALYFLEMLYSKGPLPLNLIAEVYQSKIFPHQALSYDNLINETVLFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVKSDETNNSDSNKSNSGNGKKKYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAIVRVSDISNVNIIISDNCNLESLSNELENISLSNRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQDNNNLLSKNPSDIGNFSTVGLIMPEEIDFSDDDFEIDIIKQNLSKNIVNGFDKMHCDSEDENTMQSIQSIGIEEDLSVKCHLEKNNNNS SLDRSLINCNIGTQTLSTGEIMAMHFYHDHSDS
Sbjct:    1 MAEHNLQLALYFLEMLYSKGPLPLNLIAEVYQSKIFPHQALSYDNLINETVLFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVKSDETNNSDSNKSNSGNGKKKYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAIVRVSDISNVNIIISDNCNLESLSNELENISLSNRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQDNNNLLSKNPSDIGNFSTVGLIMPEEIDFSDDDFEIDIIKQNLSKNIVNGFDKMHCDSEDENTMQSIQSIGIEEDLSVKCHLEKNNNNSLSLDRSLINCNIGTQTLSTGEIMAMHFYHDHSDS 566
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Planmine SMEST
Match: SMESG000027548.1 (SMESG000027548.1)

HSP 1 Score: 238.039 bits (606), Expect = 5.504e-70
Identity = 146/392 (37.24%), Postives = 232/392 (59.18%), Query Frame = 2 
Query:  185 LFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQ 1360
            LF+++YPSLFQ +   + P   D S  +  +  +N HSS   +         D+  E+EAVKYFQS L ++ED W+ IKSLAGHLSQAS++IR V+G Q  F  FL RH HVFEIQG+LV L++NF S+   S         KGS+N    ++ + +         +    K +  +E+   P               KG        ++A+ + D++  M+L   I+  +++ ++ ++++L + + +  S+ +   +G+T+IELEE++ K +  F+I      +   ++ ++         + L+++    ++ N++G VYH+ KLWGI+DLGQHEHVFFDKSIFK++++L+++FQIGE IYFNA+LA K SRAKWRAT+VWKE+D  ++Q
Sbjct:   55 LFMEKYPSLFQIDGNQISPI--DVSDCASSIEADNGHSSIHDSELYRLRHPVDLTQETEAVKYFQSQLTRREDHWVSIKSLAGHLSQASESIRKVVGPQINFRKFLQRHPHVFEIQGDLVSLRNNF-SSICLS---------KGSRNRPRSAIINSKKIMKKGRPVSMIVNKTEIEKESKLYPPTS------------KG--------SVAIDSRDFQAAMFLRTVIR--KKSNKKISISHLFLYLAQAPSS-VRESIGWTKIELEEFIRKQSTLFEI-----DKKGQVTCLDTEEISIIVNDDLTSKDGVRTIINQRGKVYHITKLWGIVDLGQHEHVFFDKSIFKHLDDLQRHFQIGEYIYFNAILAPKQSRAKWRATQVWKESDKDMVQ 406
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Planmine SMEST
Match: SMESG000027548.1 (SMESG000027548.1)

HSP 1 Score: 238.039 bits (606), Expect = 6.823e-70
Identity = 146/392 (37.24%), Postives = 232/392 (59.18%), Query Frame = 2 
Query:  185 LFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSVDDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQ 1360
            LF+++YPSLFQ +   + P   D S  +  +  +N HSS   +         D+  E+EAVKYFQS L ++ED W+ IKSLAGHLSQAS++IR V+G Q  F  FL RH HVFEIQG+LV L++NF S+   S         KGS+N    ++ + +         +    K +  +E+   P               KG        ++A+ + D++  M+L   I+  +++ ++ ++++L + + +  S+ +   +G+T+IELEE++ K +  F+I      +   ++ ++         + L+++    ++ N++G VYH+ KLWGI+DLGQHEHVFFDKSIFK++++L+++FQIGE IYFNA+LA K SRAKWRAT+VWKE+D  ++Q
Sbjct:   66 LFMEKYPSLFQIDGNQISPI--DVSDCASSIEADNGHSSIHDSELYRLRHPVDLTQETEAVKYFQSQLTRREDHWVSIKSLAGHLSQASESIRKVVGPQINFRKFLQRHPHVFEIQGDLVSLRNNF-SSICLS---------KGSRNRPRSAIINSKKIMKKGRPVSMIVNKTEIEKESKLYPPTS------------KG--------SVAIDSRDFQAAMFLRTVIR--KKSNKKISISHLFLYLAQAPSS-VRESIGWTKIELEEFIRKQSTLFEI-----DKKGQVTCLDTEEISIIVNDDLTSKDGVRTIINQRGKVYHITKLWGIVDLGQHEHVFFDKSIFKHLDDLQRHFQIGEYIYFNAILAPKQSRAKWRATQVWKESDKDMVQ 417
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Planmine SMEST
Match: SMESG000053185.1 (SMESG000053185.1)

HSP 1 Score: 234.572 bits (597), Expect = 5.792e-68
Identity = 175/489 (35.79%), Postives = 270/489 (55.21%), Query Frame = 2 
Query:   32 MAEHNLQLALYFLEMLY-SKGPLPLNLIAEVYQSKIFPHQA-LSYDNLINETVLFLKQYPSLFQTEAEFVFPASSD--------NSCHSEPL------PTNNIHSS-----RFINNR--RLSV---DDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNN-----QNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQD-NNNLLSKNPSDIG 1402
            M + N +  LYFLE+L  S   L ++ + + +  K F     ++  N  +   LFL+ YPSLF+ +   V   + D        ++C S  L       TN   SS      F  ++  +LS+     +D  +E EAVK+FQS L K+++KWI IKSLAGHLSQA  NIR V+G Q  F  FL+RH HVFE+QGELV LKDNF S       +N  RK K      ++S++                        N  +      F  A ++      ++N       S  +++S  +Y+ IM+L    K IE+     +L++L + + + +S  I +I+G+T+ EL+E++ K+++FF+           ++     I+      S S +    +L+NR G V+HVAKLWGIIDLG+HEHVFFDKSIF+++++L+++F+IGE +YFNA+LA K+SRAKWRAT+VWKE+D  +++  + N+LS+  ++ G
Sbjct:   36 MNDPNHKAMLYFLEVLLNSDHQLTIDELVDRFYCKNFTEDMRIACGNNAHGLKLFLECYPSLFRVKGNNVSAVTIDMPNSVSLISNCSSPSLVSQSNNTTNATVSSDNTETEFTCSKISKLSLKFPQKFDFNMEIEAVKFFQSKLQKRDEKWILIKSLAGHLSQADINIREVVGPQVEFRKFLLRHPHVFEVQGELVSLKDNFPSQ-----WLN--RKPKPINGFTNKSIRPKSL--------------------NVSSINTQREFFSATSAPTTPVAHSNGLHVLARSAPLSMSGNEYRAIMFLR---KVIEKKNGSLSLSHLFLYLGK-ASETIRNIIGWTKFELQEFIRKNSVFFE----TTPNEMILNKKANRINVIITGTSSSCDPGTRTLTNRCGNVFHVAKLWGIIDLGKHEHVFFDKSIFRHLDDLQRHFKIGETLYFNAILAPKESRAKWRATQVWKESDREMVEKFSGNILSRTTTNSG 489
[Close]
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Planmine SMEST
Match: SMESG000053185.1 (SMESG000053185.1)

HSP 1 Score: 235.343 bits (599), Expect = 7.719e-68
Identity = 175/489 (35.79%), Postives = 270/489 (55.21%), Query Frame = 2 
Query:   32 MAEHNLQLALYFLEMLY-SKGPLPLNLIAEVYQSKIFPHQA-LSYDNLINETVLFLKQYPSLFQTEAEFVFPASSD--------NSCHSEPL------PTNNIHSS-----RFINNR--RLSV---DDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQSLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMDSRSVXXXXXXXXXXXXXXXXXXXXXYFRENNKNPEVMSNFILANASKILKGENNN-----QNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRNSSNNITSIVGFTQIELEEYLIKHALFFDILDGAXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNIENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQD-NNNLLSKNPSDIG 1402
            M + N +  LYFLE+L  S   L ++ + + +  K F     ++  N  +   LFL+ YPSLF+ +   V   + D        ++C S  L       TN   SS      F  ++  +LS+     +D  +E EAVK+FQS L K+++KWI IKSLAGHLSQA  NIR V+G Q  F  FL+RH HVFE+QGELV LKDNF S       +N  RK K      ++S++                        N  +      F  A ++      ++N       S  +++S  +Y+ IM+L    K IE+     +L++L + + + +S  I +I+G+T+ EL+E++ K+++FF+           ++     I+      S S +    +L+NR G V+HVAKLWGIIDLG+HEHVFFDKSIF+++++L+++F+IGE +YFNA+LA K+SRAKWRAT+VWKE+D  +++  + N+LS+  ++ G
Sbjct:   36 MNDPNHKAMLYFLEVLLNSDHQLTIDELVDRFYCKNFTEDMRIACGNNAHGLKLFLECYPSLFRVKGNNVSAVTIDMPNSVSLISNCSSPSLVSQSNNTTNATVSSDNTETEFTCSKISKLSLKFPQKFDFNMEIEAVKFFQSKLQKRDEKWILIKSLAGHLSQADINIREVVGPQVEFRKFLLRHPHVFEVQGELVSLKDNFPSQ-----WLN--RKPKPINGFTNKSIRPKSL--------------------NVSSINTQREFFSATSAPTTPVAHSNGLHVLARSAPLSMSGNEYRAIMFLR---KVIEKKNGSLSLSHLFLYLGK-ASETIRNIIGWTKFELQEFIRKNSVFFE----TTPNEMILNKKANRINVIITGTSSSCDPGTRTLTNRCGNVFHVAKLWGIIDLGKHEHVFFDKSIFRHLDDLQRHFKIGETLYFNAILAPKESRAKWRATQVWKESDREMVEKFSGNILSRTTTNSG 489
The following BLAST results are available for this feature:
BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4
Match NameE-valueIdentityDescription
egal-16.929e-632.00Egalitarian protein homolog [Source:UniProtKB/Swi... [more]
egal-16.929e-632.00Egalitarian protein homolog [Source:UniProtKB/Swi... [more]
egal-17.851e-632.00Egalitarian protein homolog [Source:UniProtKB/Swi... [more]
egal-17.851e-632.00Egalitarian protein homolog [Source:UniProtKB/Swi... [more]
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3X8651.242e-6235.51Uncharacterized protein OS=Hydatigena taeniaeformi... [more]
A0A0R3UK913.160e-6234.63Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A068W9X01.020e-6135.59Uncharacterized protein OS=Echinococcus granulosus... [more]
W6V1801.579e-6135.59Uncharacterized protein OS=Echinococcus granulosus... [more]
A0A0R3W4A35.262e-6134.91Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Exonuclease 3'-5' domain-containing protein 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000028883.10.000e+099.82SMESG000028883.1[more]
SMESG000027548.15.504e-7037.24SMESG000027548.1[more]
SMESG000027548.16.823e-7037.24SMESG000027548.1[more]
SMESG000053185.15.792e-6835.79SMESG000053185.1[more]
SMESG000053185.17.719e-6835.79SMESG000053185.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011566 ID=SMED30011566|Name=Exonuclease 3'-5' domain-containing protein 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1972bp
TCTATATAAATCTTATATGATTTGTCACTAAATGGCTGAGCACAATTTAC
AACTTGCTTTATATTTTCTCGAAATGTTGTATAGTAAAGGGCCATTACCT
TTAAATTTGATAGCCGAAGTTTATCAAAGTAAAATATTTCCTCATCAGGC
ACTATCGTATGATAATTTAATAAATGAAACGGTGTTGTTTCTAAAGCAAT
ATCCATCATTATTCCAAACTGAAGCTGAATTTGTCTTCCCCGCATCAAGC
GATAATTCATGTCACAGTGAACCTTTACCAACCAATAATATTCATTCGTC
GCGTTTTATAAATAATCGAAGATTATCTGTAGATGACTATGATATAGCAT
TAGAATCTGAAGCTGTTAAATATTTTCAAAGTCATTTGTTGAAAAAAGAA
GACAAATGGATACCCATCAAAAGTTTAGCAGGTCACTTGTCCCAAGCGTC
TGATAACATTCGCCTTGTTATCGGTAATCAGTCGCTTTTCACAGCATTTT
TAATGCGTCATTCTCATGTTTTTGAAATACAAGGTGAATTGGTTGGCTTA
AAGGATAATTTTATGTCTAATAAATCATTTTCAAATTCTATAAATGGAAG
AAGAAAGACTAAAGGTAGTCAAAATATGGATTCTAGAAGTGTTAAAAGTG
ACGAAACTAATAATTCTGATAGTAATAAAAGTAATAGTGGAAATGGTAAA
AAAAAATATTTTAGAGAAAATAATAAAAATCCTGAAGTTATGTCAAATTT
CATACTTGCTAATGCATCTAAAATTTTGAAAGGCGAAAATAATAATCAGA
ATTCTGTTACTATTGCTCTTTCAGCAATTGATTATAAAACAATAATGTAT
TTGCATAACACAATAAAATCTATCGAAGAAACTGCTCGTGAATGTAATTT
AGCTAATTTAATGGTGAACATAGTTCGAAATTCATCAAATAATATTACTA
GTATTGTTGGATTTACTCAGATTGAACTGGAAGAGTATTTAATTAAGCAT
GCATTATTTTTCGATATTTTGGATGGGGCAATAGTTAGAGTCAGTGATAT
TTCAAATGTTAATATAATTATAAGTGACAACTGTAATTTGGAATCATTGA
GTAATGAGCTAGAAAATATTTCACTCTCAAATCGAAAGGGAATCGTGTAT
CATGTTGCAAAGCTCTGGGGAATCATAGATTTGGGTCAACATGAACATGT
ATTCTTTGATAAATCAATTTTTAAAAATATTGAAAATTTAGAAAAATACT
TTCAGATCGGTGAAAAAATTTACTTTAATGCCGTATTGGCGTCTAAAGAT
TCCCGTGCAAAATGGCGAGCTACTCGGGTTTGGAAAGAGGCAGATAATCC
GATTCTCCAAGATAATAATAACTTATTATCGAAAAATCCCTCTGATATTG
GGAATTTTTCCACTGTCGGTTTGATAATGCCTGAAGAAATCGATTTCTCT
GACGATGATTTTGAGATCGATATAATCAAGCAGAACCTCTCAAAGAATAT
TGTCAATGGGTTCGATAAAATGCATTGTGATTCAGAAGACGAGAACACCA
TGCAAAGTATTCAAAGTATCGGTATCGAAGAAGATCTGAGTGTGAAATGT
CATTTGGAGAAAAATAATAATAATAGTTTCTCTTTGGATAGGTCATTAAT
AAATTGCAATATCGGCACTCAGACGTTATCTACTGGTGAAATCATGGCAA
TGCATTTCTACCATGACCATTCTGATTCCTAATGTATCGATACACAGACA
CAGACAGGCACGCATACATATCTAATGCATATCATCATCATCATCATCTA
GTCATGCAGCAGGATCAAATTTCTTAGACTTATTTTTTAATGAAGAAATC
TCAATTATTTAATGGAACTTTTAAGTATCGATTTTATCTATTTTTTCCAT
ATCCTGAAGGCTGTGAGGTTTAATCAGAATATTTTATAAACTTATTATTA
TGGTTTTGGGCTTTTATTATTA
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protein sequence of SMED30011566-orf-1

>SMED30011566-orf-1 ID=SMED30011566-orf-1|Name=SMED30011566-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=567bp
MAEHNLQLALYFLEMLYSKGPLPLNLIAEVYQSKIFPHQALSYDNLINET
VLFLKQYPSLFQTEAEFVFPASSDNSCHSEPLPTNNIHSSRFINNRRLSV
DDYDIALESEAVKYFQSHLLKKEDKWIPIKSLAGHLSQASDNIRLVIGNQ
SLFTAFLMRHSHVFEIQGELVGLKDNFMSNKSFSNSINGRRKTKGSQNMD
SRSVKSDETNNSDSNKSNSGNGKKKYFRENNKNPEVMSNFILANASKILK
GENNNQNSVTIALSAIDYKTIMYLHNTIKSIEETARECNLANLMVNIVRN
SSNNITSIVGFTQIELEEYLIKHALFFDILDGAIVRVSDISNVNIIISDN
CNLESLSNELENISLSNRKGIVYHVAKLWGIIDLGQHEHVFFDKSIFKNI
ENLEKYFQIGEKIYFNAVLASKDSRAKWRATRVWKEADNPILQDNNNLLS
KNPSDIGNFSTVGLIMPEEIDFSDDDFEIDIIKQNLSKNIVNGFDKMHCD
SEDENTMQSIQSIGIEEDLSVKCHLEKNNNNSFSLDRSLINCNIGTQTLS
TGEIMAMHFYHDHSDS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0004527exonuclease activity
Vocabulary: biological process
TermDefinition
GO:0090305nucleic acid phosphodiester bond hydrolysis
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0003117parapharyngeal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..221