SMED30011526

Overview
NameSMED30011526
Smed IDSMED30011526
Length (bp)3843
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30011526 (SMED30011526) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011526 (SMED30011526) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011526

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 14

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30011526SMESG000064795.1 Contig38577newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011526SMESG000064795.1 Contig38577uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011526SMESG000064795.1 Contig18792newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011526SMESG000064795.1 Contig18792uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30011526SMESG000064795.1 Contig38577newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30011526SMESG000064795.1 Contig38577uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
eyeSMED30011526SMESG000064795.1 Contig38577newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
eyeSMED30011526SMESG000064795.1 Contig38577uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
head regionSMED30011526SMESG000064795.1 Contig38577newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
head regionSMED30011526SMESG000064795.1 Contig38577uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30011526SMESG000064795.1 Contig18792newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
gutSMED30011526SMESG000064795.1 Contig18792uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
eyeSMED30011526SMESG000064795.1 Contig18792newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
eyeSMED30011526SMESG000064795.1 Contig18792uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Alignments
SMED30011526 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000457:17363..21205 +19125
Homology
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BLAST of SMED30011526 vs. Planmine SMEST
Match: SMESG000064795.1 (SMESG000064795.1)

HSP 1 Score: 2160.96 bits (5598), Expect = 0.000e+0
Identity = 1208/1215 (99.42%), Postives = 1213/1215 (99.84%), Query Frame = 3 
Query:   60 LSGFPKHVFHRESTYEELLSLNAPMDDERTEADSILLSFNNSSGHDENLTFPKVPDIDSYFDLSPNIHSKIVSLNNDELCDSYKLTKVSNDNLSVVSSTSDQXXXXXXXXXXXXXXXXXXXXXXXXXLLQNLMKTVNSCRASGHKCSSSSANFDLGTIXXXXXXXXXXEPLDKFSSTQENISDEGKFEDINNSLSIPXXXXXXXXXXXXXXXXXXEEYLQKKYSIKCSLNNDNEKTKRDDGIFKSNKDLLLTEIHLEQNEIKGSLKHLSESQGCLRLPPLFEDSSEDGYSENTLVNXXXXXXXXXXXXXXEEIVRMTSGDEDLDQYLKGSSSYTVRHSAPNTPNGDFHLKRFPYRRSFSSENLIRKTKLTDVFTFSIPIHPKSANISPERKDASKPPLPSAIRHLIKSSPHKSKSFNSNFESVLPDPPSEKSLDVRELLVDGFMSNLSLDESFKLPSFPSDESLNGNNPKRSNESLEYNCRFQNQNIDSGINDFNAISLNGTGNSNSLIRLKFMESEVYSKIEIPALSDVDEIDYHYLKRVRPNSDNIFAKIPSINSPRIEMLSNEIVDSLINEHIDDQHIPKTYLNQSSQLPFQINLDDDYEEETXXXXXXXXXXXXXXXXXXXXXLRKFTELNCSNMQINANERFFCKLFHNCNILTSDDVPIVEDSIPQINLSNNFINSQLNFDKDLLNSPNFYRNEQLEILPEITQAYGQISEHKVHVSDNRNSVFIRNKLPFYVSFTQRVRECNKTIQTEKFQSNFIDQTKLFGKPCLSSNDSTFLLKSPLKSNSHSRFSMINKVFNSDKKLEFQHPEDVHFSWSKTDSLNYIQDITDEFXXXXXXXXXXXXXESFSCLKDQLKNLQENSDSTDKNRSVLGVSKQLSTPINFQYNINDKPKRVSLQELLNQTSFIDELMNRNSESLRQELGMESLSSINDIDQKIRSRNTNQIKSVQSAGSDCHFSIKKPTKNHSNQCISVRASSVCEDTLMPNVISFSLFNDGNPDGKLNQQPAVSLFNKCFKTSASSYNALXXXXXXXXXXXXGLVSITDVTSLAGDWNFNIEKRSETIPNKENFERTTSSPSSCNNEILSFPKRCKDSLSLSCSMKGNKFILPFNRHWSTNDKFASNNIRHFRGYSAMPRTNCNYXXXXXXXXXXIDAVSKTNAQSLCDLNKLTINDLPKYKNYQNLSISQESFDSYDIHSMKVNSTCHNVPLFKYG 3704
            ++GFPKHVFHRESTYEELLSLNAPMDDERTEADSILLSFNNSSGHDENLTFPKVPDIDSYFDLSPNIHSKIVSLNNDELCDSYKLTKVSNDNLSVVSSTSDQHSLSNNSNNSLSHNKTTKTKFSSKSLLQNLMKTVNSCRASGHKCSSSSANFDLGTIKTSTNKTNSTEPLDKFSSTQENISDEGKFEDINNSLSIPSDFSDLFLDASSGSLLGAEEYLQKKYSIKCSLNNDNEKTKRDDGIFKSNKDLLLTEIHLEQNEIKGSLKHLSESQGCLRLPPLFEDSSEDGYSENTLVNSYLTSRATSRSSLREEIVRMTSGDEDLDQYLKGSSSYTVRHSAPNTPNGDFHLKRFPYRRSFSSENLIRKTKLTDVFTFSIPIHPKSANISPERKDASKPPLPSAIRHLIKSSPHKSKSFNSNFESVLPDPPSEKSLDVRELLVDGFMSNLSLDESFKLPSFPSDESLNGNNPKRSNESLEYNCRFQNQNIDSGINDFNAISLNGTGNSNSLI LKFMESEVYSKIEIPALSDVDEIDYHYLKRVRPNSDNIFAKIPSINSPRIEMLSNEIVDSLINEHIDDQHIPKTYLNQSSQLPFQINLDDDYEEETDIKSLSNYSSSISTGTSSDKNLRKFTELNCSNMQINANERFFCKLFHNCNILTSDDVPIVEDSIPQINLSNNFINSQLNFDK+LLNSPNFYRNEQLEILPEITQAYGQISEHKVHVSDNRNSVFIRNKLPFYVSFTQRVRECNKTIQTEKFQSNFIDQTKLFGKPCLSSNDSTFLLKSPLKSNSHSRFSMINKVFNSDKKLEFQHPEDVHFSWSKTDSLNYIQDITDEFPIPPPPPLPPPLLESFSCLKDQLKNLQENSDSTDKNRSVLGVSKQLSTPINF+YNINDKPKRVSLQELLNQTSFIDELMNRNSESLRQELGMESLSSINDIDQKIRSRNTNQIKSV+SAGSDCHFSIKKPTKNHSNQCISVRASSVCEDTLMPNVISFSLFNDGNPDGKLNQQPAVSLFNKCFKTSASSYNALSKFNESESSSKSGLVSITDVTSLAGDWNFN EKRSETIPNKENFERTTSSPSSCNNEILSFPKRCKDSLSLSCSMKGNKFILPFNRHWSTNDKFASNNIRHFRGYSAMPRTNCNYLLDSSKLLSSIDAVSKTNAQSLCDLNKLTINDLPKYKNYQNLSISQESFDSYDIHSMKVNSTCHNVPLFKYG
Sbjct: 1015 VNGFPKHVFHRESTYEELLSLNAPMDDERTEADSILLSFNNSSGHDENLTFPKVPDIDSYFDLSPNIHSKIVSLNNDELCDSYKLTKVSNDNLSVVSSTSDQHSLSNNSNNSLSHNKTTKTKFSSKSLLQNLMKTVNSCRASGHKCSSSSANFDLGTIKTSTNKTNSTEPLDKFSSTQENISDEGKFEDINNSLSIPSDFSDLFLDASSGSLLGAEEYLQKKYSIKCSLNNDNEKTKRDDGIFKSNKDLLLTEIHLEQNEIKGSLKHLSESQGCLRLPPLFEDSSEDGYSENTLVNSYLTSRATSRSSLREEIVRMTSGDEDLDQYLKGSSSYTVRHSAPNTPNGDFHLKRFPYRRSFSSENLIRKTKLTDVFTFSIPIHPKSANISPERKDASKPPLPSAIRHLIKSSPHKSKSFNSNFESVLPDPPSEKSLDVRELLVDGFMSNLSLDESFKLPSFPSDESLNGNNPKRSNESLEYNCRFQNQNIDSGINDFNAISLNGTGNSNSLIILKFMESEVYSKIEIPALSDVDEIDYHYLKRVRPNSDNIFAKIPSINSPRIEMLSNEIVDSLINEHIDDQHIPKTYLNQSSQLPFQINLDDDYEEETDIKSLSNYSSSISTGTSSDKNLRKFTELNCSNMQINANERFFCKLFHNCNILTSDDVPIVEDSIPQINLSNNFINSQLNFDKNLLNSPNFYRNEQLEILPEITQAYGQISEHKVHVSDNRNSVFIRNKLPFYVSFTQRVRECNKTIQTEKFQSNFIDQTKLFGKPCLSSNDSTFLLKSPLKSNSHSRFSMINKVFNSDKKLEFQHPEDVHFSWSKTDSLNYIQDITDEFPIPPPPPLPPPLLESFSCLKDQLKNLQENSDSTDKNRSVLGVSKQLSTPINFKYNINDKPKRVSLQELLNQTSFIDELMNRNSESLRQELGMESLSSINDIDQKIRSRNTNQIKSVRSAGSDCHFSIKKPTKNHSNQCISVRASSVCEDTLMPNVISFSLFNDGNPDGKLNQQPAVSLFNKCFKTSASSYNALSKFNESESSSKSGLVSITDVTSLAGDWNFNSEKRSETIPNKENFERTTSSPSSCNNEILSFPKRCKDSLSLSCSMKGNKFILPFNRHWSTNDKFASNNIRHFRGYSAMPRTNCNYLLDSSKLLSSIDAVSKTNAQSLCDLNKLTINDLPKYKNYQNLSISQESFDSYDIHSMKVNSTCHNVPLFKYG 2229
The following BLAST results are available for this feature:
BLAST of SMED30011526 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011526 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000064795.10.000e+099.42SMESG000064795.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011526 ID=SMED30011526|Name=SMED30011526|organism=Schmidtea mediterranea sexual|type=transcript|length=3843bp
ATGTGCATAAATTTAATATTATGATTAATTGATTATTATTCTCATAAAAT
TCTTGAAAATTATCAGGTTTTCCAAAGCATGTATTTCACCGTGAATCCAC
TTACGAAGAATTACTATCTTTAAATGCCCCAATGGACGATGAAAGAACTG
AAGCTGATAGTATTCTTTTATCTTTTAACAATAGTTCTGGACATGATGAA
AATCTAACCTTTCCCAAAGTCCCTGATATTGACTCTTATTTTGATTTATC
ACCTAATATTCATTCCAAAATTGTATCATTAAATAATGATGAATTATGTG
ATTCTTACAAACTGACTAAAGTTTCAAATGATAACTTATCTGTGGTATCT
TCAACGTCTGATCAACATTCTTTATCCAACAATAGTAATAATTCTTTAAG
CCATAATAAGACGACTAAAACGAAATTTAGTTCAAAATCACTTTTACAGA
ATTTGATGAAAACCGTTAACAGTTGTCGAGCTTCAGGACATAAATGCTCA
TCATCTTCGGCCAACTTTGATCTTGGTACCATTAAAACTTCGACAAATAA
AACAAATTCAACTGAACCATTAGATAAATTTTCCAGTACTCAAGAAAATA
TTTCCGACGAAGGAAAATTTGAAGATATTAATAACAGTTTATCCATACCA
TCTGATTTCTCTGATTTATTTCTTGATGCATCATCGGGTAGCTTATTGGG
AGCTGAAGAGTATTTACAGAAAAAGTATTCCATCAAATGCAGTTTAAATA
ATGACAATGAAAAAACAAAGCGCGATGATGGCATTTTTAAAAGTAATAAG
GATTTGTTGCTGACAGAAATCCATTTGGAACAAAATGAGATCAAAGGATC
ATTGAAACATTTATCGGAATCGCAAGGATGTTTAAGATTGCCACCTTTAT
TTGAAGATAGCAGTGAAGATGGATATTCGGAAAATACTTTGGTCAACAGC
TATTTAACATCTCGAGCTACGAGTAGGTCATCATTAAGAGAAGAAATTGT
AAGAATGACAAGTGGAGATGAAGACTTGGATCAATATTTAAAAGGTTCAT
CGAGTTATACGGTGAGACATAGTGCTCCAAATACTCCAAATGGAGATTTT
CATTTGAAACGATTTCCCTATCGACGATCGTTTTCTTCAGAGAATTTAAT
ACGAAAAACAAAACTTACAGATGTTTTTACCTTTTCAATTCCAATCCATC
CTAAATCTGCTAATATAAGTCCAGAAAGAAAAGATGCCAGCAAGCCACCA
CTACCAAGTGCAATACGTCATTTGATAAAATCATCTCCACATAAGTCTAA
AAGTTTCAATTCCAATTTCGAAAGCGTTCTTCCGGATCCACCTTCAGAAA
AATCATTGGATGTTCGTGAACTTTTAGTCGATGGTTTTATGAGCAATTTG
TCGCTCGATGAATCGTTTAAATTACCAAGTTTTCCGTCAGATGAAAGTTT
AAATGGAAACAATCCGAAAAGATCCAACGAATCATTAGAATATAATTGTC
GATTTCAAAATCAAAACATCGACTCGGGTATCAATGACTTCAATGCGATT
TCATTAAATGGAACCGGAAATTCCAATTCTCTCATTCGATTAAAATTTAT
GGAATCAGAAGTCTACTCTAAAATCGAAATTCCCGCACTTTCAGACGTAG
ACGAGATCGATTATCACTACCTTAAACGTGTTCGACCCAATAGCGATAAT
ATTTTTGCTAAAATTCCTTCGATAAATTCACCTCGAATTGAAATGTTAAG
CAATGAAATTGTTGATTCATTAATTAATGAGCACATTGATGATCAGCACA
TACCAAAAACTTATTTGAATCAAAGCTCCCAGTTGCCTTTTCAAATCAAT
CTCGATGATGACTATGAGGAAGAAACTGATATCAAATCATTGAGTAATTA
TTCGAGTTCCATTAGCACTGGAACAAGCAGCGATAAGAATTTGAGAAAAT
TCACAGAATTGAATTGTTCAAATATGCAAATCAATGCCAACGAGAGATTT
TTCTGCAAGCTCTTTCATAATTGCAACATACTGACGAGTGATGACGTTCC
GATTGTCGAAGATTCAATTCCGCAAATCAATCTATCAAATAATTTTATCA
ATTCGCAATTGAATTTCGATAAGGATTTATTGAATTCTCCGAATTTCTAT
AGAAATGAACAACTGGAAATTCTACCAGAAATAACACAAGCATATGGACA
AATATCTGAACATAAAGTTCATGTTTCTGACAACAGAAATTCGGTTTTTA
TTCGAAATAAGTTGCCATTTTATGTGAGCTTTACACAACGGGTCAGAGAG
TGCAATAAAACAATTCAAACTGAAAAGTTCCAGTCGAATTTTATCGATCA
AACAAAACTCTTTGGAAAGCCATGTTTGTCGTCAAATGATTCAACTTTTC
TTTTGAAAAGTCCTTTGAAATCAAATTCTCATAGTAGGTTTTCGATGATT
AATAAAGTCTTTAACAGTGATAAAAAGCTTGAATTCCAACATCCTGAAGA
TGTACATTTTTCATGGTCGAAAACTGATTCGTTGAATTACATTCAGGATA
TCACTGATGAATTTCCTATTCCACCACCACCACCTTTACCACCCCCTTTA
TTGGAATCTTTCAGTTGCTTAAAGGATCAATTGAAGAATTTGCAAGAAAA
CTCTGATAGCACTGACAAAAATCGAAGCGTTCTGGGTGTTTCAAAACAAT
TATCAACACCAATAAATTTTCAATACAACATCAACGACAAACCAAAACGT
GTTTCACTTCAAGAATTATTGAATCAAACATCTTTTATTGATGAGCTAAT
GAATCGGAATTCAGAATCTTTACGACAAGAACTTGGCATGGAATCTTTAT
CATCAATTAATGATATAGATCAAAAAATTAGATCTAGAAATACGAATCAA
ATTAAATCCGTCCAATCAGCTGGAAGTGATTGTCATTTTAGTATTAAGAA
ACCAACTAAAAATCATTCAAATCAATGTATTTCTGTGCGAGCTTCATCAG
TTTGTGAAGATACTTTAATGCCAAATGTCATTTCTTTTTCTTTATTTAAT
GATGGGAATCCAGACGGGAAACTCAATCAACAACCAGCAGTTTCATTATT
TAATAAATGCTTTAAAACATCCGCCAGCTCATACAACGCACTTTCAAAAT
TCAACGAATCAGAATCGTCCTCAAAATCCGGATTAGTGTCTATTACTGAT
GTAACCTCATTGGCTGGCGATTGGAATTTCAATATTGAAAAACGGTCAGA
AACGATTCCAAACAAAGAGAATTTTGAAAGAACTACTTCCTCTCCATCAA
GTTGTAACAATGAAATTCTTTCATTTCCAAAACGCTGTAAAGATTCTTTA
TCCTTATCTTGTAGTATGAAAGGTAATAAATTTATTTTACCATTCAACAG
ACATTGGAGTACAAATGATAAATTTGCTAGTAATAATATCCGGCATTTTC
GTGGTTATTCTGCAATGCCTAGGACTAATTGCAATTATTTGCTCGACAGC
AGTAAATTATTATCATCAATTGATGCTGTGTCTAAAACCAATGCACAATC
GCTATGCGATTTAAACAAACTAACAATAAATGATCTTCCAAAATATAAAA
ATTACCAGAATTTATCCATCAGCCAGGAAAGCTTTGATTCTTATGATATC
CATTCTATGAAAGTAAACAGCACTTGTCACAACGTTCCTTTATTTAAATA
CGGTAGATAATATATTTTTAATTGGGATTCTAGGTTATAGTTATGTTCCT
TTATGTTCATTGTTATATAATATATGTCTTTCCTAGTTGCATTTATTAAT
TTGTCTTTTATAATTTGTCAGGAAGTCCATTCAAATTGCCAAT
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protein sequence of SMED30011526-orf-1

>SMED30011526-orf-1 ID=SMED30011526-orf-1|Name=SMED30011526-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1193bp
MDDERTEADSILLSFNNSSGHDENLTFPKVPDIDSYFDLSPNIHSKIVSL
NNDELCDSYKLTKVSNDNLSVVSSTSDQHSLSNNSNNSLSHNKTTKTKFS
SKSLLQNLMKTVNSCRASGHKCSSSSANFDLGTIKTSTNKTNSTEPLDKF
SSTQENISDEGKFEDINNSLSIPSDFSDLFLDASSGSLLGAEEYLQKKYS
IKCSLNNDNEKTKRDDGIFKSNKDLLLTEIHLEQNEIKGSLKHLSESQGC
LRLPPLFEDSSEDGYSENTLVNSYLTSRATSRSSLREEIVRMTSGDEDLD
QYLKGSSSYTVRHSAPNTPNGDFHLKRFPYRRSFSSENLIRKTKLTDVFT
FSIPIHPKSANISPERKDASKPPLPSAIRHLIKSSPHKSKSFNSNFESVL
PDPPSEKSLDVRELLVDGFMSNLSLDESFKLPSFPSDESLNGNNPKRSNE
SLEYNCRFQNQNIDSGINDFNAISLNGTGNSNSLIRLKFMESEVYSKIEI
PALSDVDEIDYHYLKRVRPNSDNIFAKIPSINSPRIEMLSNEIVDSLINE
HIDDQHIPKTYLNQSSQLPFQINLDDDYEEETDIKSLSNYSSSISTGTSS
DKNLRKFTELNCSNMQINANERFFCKLFHNCNILTSDDVPIVEDSIPQIN
LSNNFINSQLNFDKDLLNSPNFYRNEQLEILPEITQAYGQISEHKVHVSD
NRNSVFIRNKLPFYVSFTQRVRECNKTIQTEKFQSNFIDQTKLFGKPCLS
SNDSTFLLKSPLKSNSHSRFSMINKVFNSDKKLEFQHPEDVHFSWSKTDS
LNYIQDITDEFPIPPPPPLPPPLLESFSCLKDQLKNLQENSDSTDKNRSV
LGVSKQLSTPINFQYNINDKPKRVSLQELLNQTSFIDELMNRNSESLRQE
LGMESLSSINDIDQKIRSRNTNQIKSVQSAGSDCHFSIKKPTKNHSNQCI
SVRASSVCEDTLMPNVISFSLFNDGNPDGKLNQQPAVSLFNKCFKTSASS
YNALSKFNESESSSKSGLVSITDVTSLAGDWNFNIEKRSETIPNKENFER
TTSSPSSCNNEILSFPKRCKDSLSLSCSMKGNKFILPFNRHWSTNDKFAS
NNIRHFRGYSAMPRTNCNYLLDSSKLLSSIDAVSKTNAQSLCDLNKLTIN
DLPKYKNYQNLSISQESFDSYDIHSMKVNSTCHNVPLFKYGR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000036eye
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.474