HTH CENPB-type domain-containing protein

Overview
NameHTH CENPB-type domain-containing protein
Smed IDSMED30011492
Length (bp)1768
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of HTH CENPB-type domain-containing protein (SMED30011492) t-SNE clustered cells

Violin plots show distribution of expression levels for HTH CENPB-type domain-containing protein (SMED30011492) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of HTH CENPB-type domain-containing protein (SMED30011492) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for HTH CENPB-type domain-containing protein (SMED30011492) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011492

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30011492SMESG000003171.1 Contig674newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30011492SMESG000003171.1 Contig674uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
Category 3 cellSMED30011492SMESG000068262.1 SMESG000053435.1 SMESG000049288.1 dd_Smed_v6_6797_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: TIGD2 (tigger transposable element derived 2 [Source:HGNC Symbol;Acc:HGNC:18333])

HSP 1 Score: 64.3142 bits (155), Expect = 3.940e-10
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  468 KRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            KRK +VLTIK K  ++++ E+G S  KLS  YGI   TVRDI K K ++  +      ++G SKR S+K+ST+E+L
Sbjct:    4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: TIGD2 (tigger transposable element derived 2 [Source:HGNC Symbol;Acc:HGNC:18333])

HSP 1 Score: 64.3142 bits (155), Expect = 3.940e-10
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  468 KRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            KRK +VLTIK K  ++++ E+G S  KLS  YGI   TVRDI K K ++  +      ++G SKR S+K+ST+E+L
Sbjct:    4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Match: JRKL (JRK like [Source:HGNC Symbol;Acc:HGNC:6200])

HSP 1 Score: 55.4546 bits (132), Expect = 2.327e-7
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            ++ KRK +VLTIK K  ++++ E G S  +L+  YGI   TVRDI K K K+  +      ++  +KR S+K S +E+L
Sbjct:    1 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKSMKPSMYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Tigd2 (tigger transposable element derived 2 [Source:MGI Symbol;Acc:MGI:1915390])

HSP 1 Score: 65.0846 bits (157), Expect = 1.202e-10
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  468 KRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            KRK +VLTIK K  ++++ E+G S  KLS  YGI   TVRDI K K ++  +      ++G SKR S+K+ST+E+L
Sbjct:    4 KRKRVVLTIKDKLDIIKKLEEGNSFKKLSVLYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Match: Jrkl (Jrk-like [Source:MGI Symbol;Acc:MGI:1924782])

HSP 1 Score: 55.0694 bits (131), Expect = 1.638e-7
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            ++ KRK +VLTIK K  ++++ E G S  +L+  YGI   TVRDI K K K+  +      ++  +KR S+K S +E+L
Sbjct:    1 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKSMKPSMYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q0VBL1|TIGD2_MOUSE (Tigger transposable element-derived protein 2 OS=Mus musculus OX=10090 GN=Tigd2 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 8.409e-10
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  468 KRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            KRK +VLTIK K  ++++ E+G S  KLS  YGI   TVRDI K K ++  +      ++G SKR S+K+ST+E+L
Sbjct:    4 KRKRVVLTIKDKLDIIKKLEEGNSFKKLSVLYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEEL 79
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BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q4W5G0|TIGD2_HUMAN (Tigger transposable element-derived protein 2 OS=Homo sapiens OX=9606 GN=TIGD2 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.892e-9
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  468 KRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            KRK +VLTIK K  ++++ E+G S  KLS  YGI   TVRDI K K ++  +      ++G SKR S+K+ST+E+L
Sbjct:    4 KRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKERIINYANSSDPTSGVSKRKSMKSSTYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9Y4A0|JERKL_HUMAN (Jerky protein homolog-like OS=Homo sapiens OX=9606 GN=JRKL PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.118e-6
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            ++ KRK +VLTIK K  ++++ E G S  +L+  YGI   TVRDI K K K+  +      ++  +KR S+K S +E+L
Sbjct:    1 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKSMKPSMYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Match: sp|B2RRL2|JERKL_MOUSE (Jerky protein homolog-like OS=Mus musculus OX=10090 GN=Jrkl PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.146e-6
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            ++ KRK +VLTIK K  ++++ E G S  +L+  YGI   TVRDI K K K+  +      ++  +KR S+K S +E+L
Sbjct:    1 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKSMKPSMYEEL 79
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A182QDM1 (HTH CENPB-type domain-containing protein OS=Anopheles farauti OX=69004 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.247e-15
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 3 
Query:  444 MEKERLTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDLKDPDIVSLVTE 728
            ME ++   KRK+IVLT++QK TL+ R+EKGE+   LS+EY I +QTVRDI+KQK K+  F ++C    G +KR S+K ST+E+L D  ++S   E
Sbjct:   42 MEPQQSAGKRKKIVLTLEQKLTLIRRYEKGETAQGLSKEYHIGLQTVRDIIKQKEKILMFIQNCDTYDGPTKRKSMKMSTYEEL-DASMLSWYNE 135
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A182N6W4 (Uncharacterized protein OS=Anopheles dirus OX=7168 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.631e-12
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDLKDPDIVSLVTE 728
            +  KRK+IVLT++QK TL+ R EKGE+   L+++Y I +QTVRDI+KQK K+ +F + C    G +KR S+K S + +L D  ++S   E
Sbjct:    1 MPAKRKKIVLTLEQKLTLIRRCEKGETTQALAKQYHIGLQTVRDIIKQKAKILSFIQHCDTYDGPTKRKSMKISMYGEL-DASMLSWYNE 89
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A4Y2HP36 (Jerky-like OS=Araneus ventricosus OX=182803 GN=JRKL_12 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.526e-11
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 3 
Query:  468 KRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDL 695
            KRK  VL ++QK  +++  + GES  KL+++Y I +QTVRDI   K KL  FTRDC   +  SKR S+KT+T++DL
Sbjct:    5 KRKRNVLNVEQKLEILQNLDNGESARKLAKDYQIGVQTVRDIKNNKEKLITFTRDCDDKSVLSKRKSLKTTTYKDL 80
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A182VQC7 (HTH CENPB-type domain-containing protein OS=Anopheles minimus OX=112268 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.058e-10
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDLKDPDIVSLVTE 728
            + ++RK+ +LT+ QK  LVER + GE+  +L++ Y I  QT RDI+KQ+ KL  F ++C  S G  KR S+K S+FE+L D  ++S   E
Sbjct:    9 IHRRRKKTMLTLAQKIALVERHDAGETPQELAKSYKIGEQTARDIIKQRAKLWKFVQNCETSEGPVKRKSMKVSSFEEL-DASMLSWYNE 97
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Match: A0A182SYG3 (HTH CENPB-type domain-containing protein OS=Anopheles maculatus OX=74869 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.361e-10
Identity = 37/90 (41.11%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:  459 LTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDIVKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDLKDPDIVSLVTE 728
            + ++RK+ +LT+ QK  L+ER + GE+   LS+ + I  QT RDI+KQ++K+  F ++C  S G  KR S+K S+FE+L D  ++S   E
Sbjct:    9 ILRRRKKTMLTLAQKIALIERHDLGETPQDLSKSFQIGEQTARDIIKQRDKIWKFVQNCETSEGPVKRKSMKISSFEEL-DASMLSWYNE 97
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000036917.1 (SMESG000036917.1)

HSP 1 Score: 102.834 bits (255), Expect = 1.408e-22
Identity = 46/62 (74.19%), Postives = 56/62 (90.32%), Query Frame = 3 
Query:  669 IKTSTFEDLKDPDIVSLVTEKEEDESNNTSKEDTSGYVSHEMALNCIETLLDYAEQRGTEYN 854
            ++ ++FE ++DPDIVS VT+KEE++SN  S+EDTSGYVSHE ALNCIETLLDYAEQRGTEYN
Sbjct:  753 LEITSFERMEDPDIVSFVTQKEENDSNTISEEDTSGYVSHETALNCIETLLDYAEQRGTEYN 814
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000036917.1 (SMESG000036917.1)

HSP 1 Score: 102.834 bits (255), Expect = 1.475e-22
Identity = 46/62 (74.19%), Postives = 56/62 (90.32%), Query Frame = 3 
Query:  669 IKTSTFEDLKDPDIVSLVTEKEEDESNNTSKEDTSGYVSHEMALNCIETLLDYAEQRGTEYN 854
            ++ ++FE ++DPDIVS VT+KEE++SN  S+EDTSGYVSHE ALNCIETLLDYAEQRGTEYN
Sbjct:  731 LEITSFERMEDPDIVSFVTQKEENDSNTISEEDTSGYVSHETALNCIETLLDYAEQRGTEYN 792
[Close]
BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Match: SMESG000036917.1 (SMESG000036917.1)

HSP 1 Score: 102.834 bits (255), Expect = 1.708e-22
Identity = 46/62 (74.19%), Postives = 56/62 (90.32%), Query Frame = 3 
Query:  669 IKTSTFEDLKDPDIVSLVTEKEEDESNNTSKEDTSGYVSHEMALNCIETLLDYAEQRGTEYN 854
            ++ ++FE ++DPDIVS VT+KEE++SN  S+EDTSGYVSHE ALNCIETLLDYAEQRGTEYN
Sbjct:  818 LEITSFERMEDPDIVSFVTQKEENDSNTISEEDTSGYVSHETALNCIETLLDYAEQRGTEYN 879
The following BLAST results are available for this feature:
BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
TIGD23.940e-1046.05tigger transposable element derived 2 [Source:HGNC... [more]
TIGD23.940e-1046.05tigger transposable element derived 2 [Source:HGNC... [more]
JRKL2.327e-739.24JRK like [Source:HGNC Symbol;Acc:HGNC:6200][more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Tigd21.202e-1046.05tigger transposable element derived 2 [Source:MGI ... [more]
Jrkl1.638e-739.24Jrk-like [Source:MGI Symbol;Acc:MGI:1924782][more]
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BLAST of HTH CENPB-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q0VBL1|TIGD2_MOUSE8.409e-1046.05Tigger transposable element-derived protein 2 OS=M... [more]
sp|Q4W5G0|TIGD2_HUMAN1.892e-946.05Tigger transposable element-derived protein 2 OS=H... [more]
sp|Q9Y4A0|JERKL_HUMAN1.118e-639.24Jerky protein homolog-like OS=Homo sapiens OX=9606... [more]
sp|B2RRL2|JERKL_MOUSE1.146e-639.24Jerky protein homolog-like OS=Mus musculus OX=1009... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A182QDM12.247e-1549.47HTH CENPB-type domain-containing protein OS=Anophe... [more]
A0A182N6W49.631e-1245.56Uncharacterized protein OS=Anopheles dirus OX=7168... [more]
A0A4Y2HP366.526e-1148.68Jerky-like OS=Araneus ventricosus OX=182803 GN=JRK... [more]
A0A182VQC74.058e-1043.33HTH CENPB-type domain-containing protein OS=Anophe... [more]
A0A182SYG34.361e-1041.11HTH CENPB-type domain-containing protein OS=Anophe... [more]
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of HTH CENPB-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000036917.11.408e-2274.19SMESG000036917.1[more]
SMESG000036917.11.475e-2274.19SMESG000036917.1[more]
SMESG000036917.11.708e-2274.19SMESG000036917.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011492 ID=SMED30011492|Name=HTH CENPB-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1768bp
GATCAATACTACTTTCGAATTTTAGTAAATTTTTTAATTGAACTTTAATT
AATTAATTTTTTATTATGAAATTTCTTAAAGAAATTCATATTTTTTAAAA
TCTTTTTTAAATACAGTGTACTGTCTATTATCCGTTCATGGATTATCCGG
ATTTCGGATTATTCGTGCCTGAAAATAAATATTTTTTAATTCAAATTTAA
TTTGATTGATTTTTTCTATTACAATTATAAAACGCATTATTTAATTTCGG
TCTTGAATATGCGTGTTGTTTGAAAGAAATACGTATAGGGACACTGCGTG
TCTTTCCAGAGAGCAGTTTTTTTCATTACTCTCGTCTGTTTGATTCATTG
TAATTTCTTTCTGTGTGATATTATTTTTCTTGTTATGTGTAATCTCAAAA
ATTCATATTTTAGCTCTACATATCTGTTCTGTACCGTTTAAAAATGGAGA
AAGAACGATTAACAAAAAAACGAAAGGAAATTGTACTCACTATAAAACAA
AAAAATACATTAGTTGAGAGATTCGAAAAAGGAGAATCCATGTCAAAACT
TTCTGAAGAATATGGAATTTGTATTCAAACTGTTCGAGATATAGTCAAAC
AAAAAAATAAGTTAGAGGCGTTTACCAGAGATTGTGGTGGTTCTGCGGGT
ACTTCGAAACGAAGTAGCATAAAAACGTCGACATTCGAAGATTTGAAAGA
TCCTGATATCGTTTCTCTTGTTACTGAAAAGGAAGAAGATGAAAGTAATA
ATACAAGCAAAGAAGATACCAGTGGCTACGTTAGTCATGAAATGGCATTG
AATTGTATTGAAACATTGCTAGATTACGCTGAACAAAGGGGAACTGAATA
TAATAATGTAATAGCTTTAAGAATATTTCGAAGTAAAATAAAAAATTCGT
TAAAAAAATCTCAAAAACAAATGAAAATAACAGATTTTATGTCTTTAATA
TGATCAAAGTAATTATTTGTCATACCTAATAAATATGTATAAAATGAAGA
TGTATTAGTAGCAGTATAGCTTAAAGTTAGGCAAGTAAATAAATCACCAA
ATAGGCCTTTGCTGCAATTAATGTATTAAATTGAGATAATTTTTTAAATC
TCCTGGAATTTAGTAGCTTCAATGTTTAAATGCTTTTTTATTTTCCTTTT
AATTAATTTTCTGCGTTTTTAATTAAATACAATTTAAAATCAAAATGGCA
TTCCAATCATCAGTGACTAACTTGACCTCAAGATCTTTAACGAACTTTAA
AGACACTAGATTTTCTATTCGTATCGTACACAAGTCTTGGACATTGAGGA
AATATCTGACATGAACTACAAAAAAGGAAACTTTTGCAATATGGATAAAA
AAAATTCATAAAAATATACAAAAAAAGAAAAATATATTAGAAGTATATTC
GGGAACTTGCATCAAAGAAGATCTGGATCATTCTGAAAAATCCTCAGTAA
ACAGACATTTTCAATGAAATTAACCGAGGAAAGAGAAAAATATTTCAGTG
ATACCATTAAAAAAAATTTCAATTTAAAGATAAGTATATACAACAATTAA
CACTAAAGTAGAAATCAGTGAAATTGCAAGTCTGATCTGTAGCTGATTTT
TGTAAAGATGTTTTTAAATGTTTAAATTAAATTAATTTAAATAAAAAAAG
TTTAAAAGCTTTTAGGAAAAAAATTAAAATAGAAAGGGTTTAATCTGAGA
TTATTTTTGAGTTATTATTTTTTATAAACTTTCAATAATTAGAGAGCGAT
GGTAGACTTGTGATTTCA
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protein sequence of SMED30011492-orf-1

>SMED30011492-orf-1 ID=SMED30011492-orf-1|Name=SMED30011492-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=170bp
MEKERLTKKRKEIVLTIKQKNTLVERFEKGESMSKLSEEYGICIQTVRDI
VKQKNKLEAFTRDCGGSAGTSKRSSIKTSTFEDLKDPDIVSLVTEKEEDE
SNNTSKEDTSGYVSHEMALNCIETLLDYAEQRGTEYNNVIALRIFRSKIK
NSLKKSQKQMKITDFMSLI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000035Category 3 cell
PLANA:0000070intestinal phagocyte
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR007889HTH_Psq
Vocabulary: molecular function
TermDefinition
GO:0003677DNA binding
GO:0003674molecular_function
GO:0003676nucleic acid binding
Vocabulary: cellular component
TermDefinition
GO:0005575cellular_component
GO:0005634nucleus
Vocabulary: biological process
TermDefinition
GO:0008150biological_process