Facilitated trehalose transporter Tret1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011453 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Facilitated trehalose transporter Tret1 vs. TrEMBL
Match: A0A2A4J4A8 (Uncharacterized protein (Fragment) OS=Heliothis virescens OX=7102 GN=B5V51_7891 PE=4 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.452e-14 Identity = 72/229 (31.44%), Postives = 112/229 (48.91%), Query Frame = 2 Query: 161 VLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEA----VRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQ-RSNLRTMKNDVDXXXXXXXXKE--KFLKNQSIHTKFKGEVVKELQSKLNS-KECILLPPRDYDTLHRKTRKLS 823 V ++G E++G+ G+EF P I E D P K+ + V H +K+++ + + + +T + IP S S + + + LL+ Y+P TG PVH++ Y+ +D A L +LI R N +K+F +IE RK+Q R L + K DS S S+E + + EL+ KL++ K ILLPPRDYDT+HR+ LS Sbjct: 16 VWFLGAQESRGLRGEEFAIPA---IRILEERARDLEPFKVTLQVSHKGLKIIQNVTAKGKQQTIKHF--IP--HGSITSAVVQADVVACVLLL--YNPLTGCPVHVHAYRCDSDHTAEMLYTHLQALIDRPEN----QKKFADIE------RKLQMRGALPSSKKPPDSSLGSEVSRESDSGSNEERCVANLYDSLAAELKQKLSTGKSPILLPPRDYDTVHRQKGNLS 225
BLAST of Facilitated trehalose transporter Tret1 vs. TrEMBL
Match: A0A1S3IS28 (LOW QUALITY PROTEIN: uncharacterized protein LOC106166891 OS=Lingula unguis OX=7574 GN=LOC106166891 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.790e-14 Identity = 66/245 (26.94%), Postives = 113/245 (46.12%), Query Frame = 2 Query: 161 VLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEAVRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQRSNLRT---------------------MKNDVDXXXXXXXXKEKFLKNQSIH--TKFKGEVVKELQSKLNSKE--CILLPPRDYDTLHRKTRKL 820 V Y+GW EA+GI G E+ +P+ + R+ Q + +L I V E+K+ +E+ I+YP IP DV+Y + ++ V+ + LG PYT VH +VY+ ++D A ++ + + + R +IE L +IQ + + +++ + SS ++ N + T + + EL KLN+KE +LLPP+DYDT+ R+ L Sbjct: 17 VEYLGWKEARGIAGREYTEPIVRELINRRKQQENL--PRLTIQVSRKELKITQEVDKRKGKIEKIKYPPIPAQDVTYVCQALSPDKDVVACIFLGLXPYTKCAVHTHVYRCDSEDTAAIFVAHVNQLLEIPTHQHRIRKIEADLAAKGQIQSRFIESDDPPTHHSGSSGGSRSPPYSGSGDNIGISRERGSSGKRPPPNDIANDITPYD-SLAAELHQKLNAKEEAPLLLPPKDYDTVCRRRGNL 258
BLAST of Facilitated trehalose transporter Tret1 vs. TrEMBL
Match: A0A1E1WIH4 (PID domain-containing protein (Fragment) OS=Pectinophora gossypiella OX=13191 GN=g.17019 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.729e-14 Identity = 72/237 (30.38%), Postives = 114/237 (48.10%), Query Frame = 2 Query: 152 NFDVLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEA----VRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQ-RSNLRTMKNDVDXXXXXXXXKE--KFLKNQSIHTKFKGEVVKELQSKLNS------KECILLPPRDYDTLHRKTRKLS 823 ++ V ++G E++G+ G+EF P I E D P K+ + V H +K+++ + + + +T + IP S S + + + LL+ Y+P TG PVH++ Y+ +D A L +LI R N +K+F +IE RK+Q R L + K DS S S+E + + EL+ KL++ K ILLPPRDYDT+HR+ LS Sbjct: 13 SYYVWFLGAQESRGLRGEEFALPA---IRILEERARDLEPFKVTLQVSHKGLKIIQNVTAKGKQQTIKHF--IP--HGSITSAVVQSDVVACVLLL--YNPLTGCPVHVHAYRCDSDHTAEMLYTHLQALIERPEN----QKKFADIE------RKLQMRGALPSTKKPPDSSLGSEVSRESDSGSNEERCVANLYDSLAAELKQKLSTGKKGIGKSPILLPPRDYDTVHRQKGNLS 230
BLAST of Facilitated trehalose transporter Tret1 vs. TrEMBL
Match: A0A2A4J328 (Uncharacterized protein (Fragment) OS=Heliothis virescens OX=7102 GN=B5V51_7891 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.516e-14 Identity = 72/234 (30.77%), Postives = 112/234 (47.86%), Query Frame = 2 Query: 161 VLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEA----VRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQ-RSNLRTMKNDVDXXXXXXXXKE--KFLKNQSIHTKFKGEVVKELQSKLNS------KECILLPPRDYDTLHRKTRKLS 823 V ++G E++G+ G+EF P I E D P K+ + V H +K+++ + + + +T + IP S S + + + LL+ Y+P TG PVH++ Y+ +D A L +LI R N +K+F +IE RK+Q R L + K DS S S+E + + EL+ KL++ K ILLPPRDYDT+HR+ LS Sbjct: 16 VWFLGAQESRGLRGEEFAIPA---IRILEERARDLEPFKVTLQVSHKGLKIIQNVTAKGKQQTIKHF--IP--HGSITSAVVQADVVACVLLL--YNPLTGCPVHVHAYRCDSDHTAEMLYTHLQALIDRPEN----QKKFADIE------RKLQMRGALPSSKKPPDSSLGSEVSRESDSGSNEERCVANLYDSLAAELKQKLSTGKKGLGKSPILLPPRDYDTVHRQKGNLS 230
BLAST of Facilitated trehalose transporter Tret1 vs. TrEMBL
Match: S4NMH1 (Uncharacterized protein (Fragment) OS=Pararge aegeria OX=116150 PE=4 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.187e-13 Identity = 71/233 (30.47%), Postives = 109/233 (46.78%), Query Frame = 2 Query: 161 VLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEA----VRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQRSNLRTMKNDVDXXXXXXXXKEKFLKNQSIH--TKFKGEVVKELQSKLNS------KECILLPPRDYDTLHRKTRKLS 823 V ++G E++G+ G+EF P I E D P K+ + V H +K+++ + S + +T + IP S S + + + LL+ Y+P TG PVH++ Y+ +D A L +LI R N +K+F +IE RK+Q K DS S S+E + + EL+ KL++ K ILLPPRDYDT+HR+ LS Sbjct: 16 VWFLGAQESRGLRGEEFALPA---IRLLEERARDLEPFKVTLQVSHKGLKIIQNVTSKGKQQTIKHF--IP--HGSITSAVVQGDVVACVLLL--YNPITGCPVHVHAYRCDSDTTAEMLFTHLQALIERPEN----QKKFADIE------RKLQMRGALPSKKPPDSSLGSEVSRESDSGSNEDRNVANLYDSLAAELKQKLSTGKKGLGKSPILLPPRDYDTVHRQKGNLS 229
BLAST of Facilitated trehalose transporter Tret1 vs. Planmine SMEST
Match: SMESG000063382.1 (SMESG000063382.1) HSP 1 Score: 491.115 bits (1263), Expect = 6.583e-178 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 2 Query: 143 MSRNFDVLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEAVRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQRSNLRTMKNDVDXXXXXXXXKEKFLKNQSIHTKFKGEVVKELQSKLNSKECILLPPRDYDTLHRKTRKLSAEFNRYNLPIEHLPFSKMN 880 MSRNFDVLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEAVRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQRSNLRTMKNDVDSLSQSSSSKEKFLKNQSIHTKFKGEVVKELQSKLNSKECILLPPRDYDTLHRKTRKLSAEFNRYNLPIEHLPFSKMN Sbjct: 1 MSRNFDVLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVKHMEIKVMKEIFSTNQVRTFIEYPNIPLIDVSYASKITHEEQIYVSLLVLGYDPYTGFPVHLYVYQVQNDDEAVRLISLILRKTNTSGLKKRFIEIENMLVEDRKIQRSNLRTMKNDVDSLSQSSSSKEKFLKNQSIHTKFKGEVVKELQSKLNSKECILLPPRDYDTLHRKTRKLSAEFNRYNLPIEHLPFSKMN 246 The following BLAST results are available for this feature:
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Facilitated trehalose transporter Tret1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011453 ID=SMED30011453|Name=Facilitated trehalose transporter Tret1|organism=Schmidtea mediterranea sexual|type=transcript|length=904bpback to top protein sequence of SMED30011453-orf-1 >SMED30011453-orf-1 ID=SMED30011453-orf-1|Name=SMED30011453-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=247bp MSRNFDVLYIGWSEAKGIWGDEFVKPVFNHIYTSRECQNDFVPEKLRISVback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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