SMED30011393

Overview
NameSMED30011393
Smed IDSMED30011393
Length (bp)1676
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30011393 (SMED30011393) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011393 (SMED30011393) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30011393 (SMED30011393) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30011393 (SMED30011393) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011393

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30011393SMESG000001261.1 Contig1170newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30011393SMESG000001261.1 Contig1170uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30011393SMESG000014290.1 Contig1170newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30011393SMESG000014290.1 Contig1170uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
X1 cellSMED30011393SMESG000001261.1 SmedASXL_067231SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30011393SMESG000001261.1 SmedASXL_067231SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30011393SMESG000001261.1 SmedASXL_061977SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30011393SMESG000001261.1 SmedASXL_061977SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30011393 vs. Planmine SMEST
Match: SMESG000001261.1 (SMESG000001261.1)

HSP 1 Score: 365.54 bits (937), Expect = 8.106e-125
Identity = 189/240 (78.75%), Postives = 190/240 (79.17%), Query Frame = 3 
Query:  588 KASNFSFLPSQIIINRNVTNGTYIFSCKLNILREDFTLTIDVFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDSICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRVSFVVIGIPKESYKLSSDLVITINSDKTLVNRNICVVCGNKPNMNNSKCYRLVEVAKSRLTMGRCSIKGHR 1307
            KASNFSFLPSQIIINRNVTNGTYIFS               VFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDSICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSR S                                  +CGNKPNMNNSKCYRLVEVAKSRLTMGRCSIKGHR
Sbjct:   30 KASNFSFLPSQIIINRNVTNGTYIFSY--------------VFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDSICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRRS----------------------------------LCGNKPNMNNSKCYRLVEVAKSRLTMGRCSIKGHR 221

HSP 2 Score: 60.4622 bits (145), Expect = 3.621e-10
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 2 
Query:  443 MLQNLHFFGAETLSHSKNIFFMDKYNSK 526
            MLQNLHFFGAETLSHSKNIFFMDKYNSK
Sbjct:    1 MLQNLHFFGAETLSHSKNIFFMDKYNSK 28
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BLAST of SMED30011393 vs. Planmine SMEST
Match: SMESG000016214.1 (SMESG000016214.1)

HSP 1 Score: 259.61 bits (662), Expect = 8.389e-75
Identity = 142/357 (39.78%), Postives = 209/357 (58.54%), Query Frame = 3 
Query:  207 PVRLDITPLARVLTIGRYVTISCSVNPVYVQLQYLYFSSSEFFIKNKNSTDVIISNSIIYHGRCLCFTCNGPYVIVETKCYKIYTSLELKHSPIQKIYFSWTNTTLNVILTDNFKPDRSYIVKCQIDKASNFSFLP-SQIIINRNVTNGTYIFSCKLNILREDFTLTIDVFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGN-NTNDSICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRVSFVVIGIPKESYKLSSDLVITINSDKTLVNRNICVVCGNKPNMNNSKCYRLVEVAKSR 1271
            P+ L I P A  + I   V I C V P  + L  +  S+ + F+   +S++ II NS+++  RCLCF+CN   +    +CY   T L L+  P Q +YF+W   T+     +  KP R Y+  C +    NFS     +I I+  + N  Y F C +  + +   LT+ V+S+ V+ +I PN ++ Y+    MEV C   P  +   +P I+F+ INST        +I++GG + +  D IC  CGH  +P  + +C++PY GD+NVTI P E+E+Y+   H I C+  P++  YS+VSF VIGIPK SYK+SSDL I INSDKTL+N++ICV+CGN+P MN S+CYRL    +SR
Sbjct: 1309 PINLIIYPPAGTVVIMDTVRIYCEVQPS-LNLGMIILSTMQSFLHGNDSSEKIIPNSVLFRDRCLCFSCNCAKMSSVRQCYNFTTPLILRTKPKQDLYFAWNRVTIETYFINKNKPGRKYLAMCSL-PYENFSVSNLGEIHISPMLVNLVYDFHCTIPTVVDYQILTLFVYSNKVELEIIPNNTDIYIFSMVMEVECIVKPDDLNVVFPVIKFLSINSTQYVYKAFRLILIGGVDYDVKDIICVVCGHDYLPFNVSRCFSPYMGDINVTILPLEWEIYYLMPHTITCKIVPQFSNYSKVSFFVIGIPKSSYKVSSDLTIRINSDKTLINKDICVICGNRPTMNKSRCYRLASDDESR 1663

HSP 2 Score: 67.781 bits (164), Expect = 1.745e-11
Identity = 47/175 (26.86%), Postives = 78/175 (44.57%), Query Frame = 3 
Query:  735 QIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRY-NRSVIILGGGNNTNDSICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRVSFVVIGIPKESYK-LSSDLVITINSDKTLVNRNICVVCG-NKPNMNNSKCYRL 1250
            +I P  + + +  D M+V C   PI     +P + F  ++ +  K    R   I    +      C TC  P++P  + KCY P+ G VN  +TPR   L++   H I+C  +  +     +   + G+    Y  + +++ I I     L+NR +  VCG N P M  +  Y L
Sbjct:  872 EIIPKVNYYLVYDDTMDVICQVSPIKSLPNFPGLGFTKMSLSYYKVITQRHYKICHPKSRCAGKFCFTCADPQLPT-VFKCYKPWTGTVNFFMTPRNHILFYMEPHLIVCHVDKPFTKNESIKMDINGLKLNEYTYIPAEMTIKILPLHYLLNRRVIAVCGTNFPTMKANHIYNL 1045
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BLAST of SMED30011393 vs. Planmine SMEST
Match: SMESG000004613.1 (SMESG000004613.1)

HSP 1 Score: 206.068 bits (523), Expect = 1.617e-58
Identity = 126/357 (35.29%), Postives = 178/357 (49.86%), Query Frame = 3 
Query:  207 PVRLDITPLARVLTIGRYVTISCSVNPVYVQLQYLYFSSSEFFIKNKNSTDVIISNSIIYHGRCLCFTCNGPYVIVETKCYKIYTSLELKHSPIQKIYFSWTNTTLNVILTDNFKPDRSYIVKCQIDKASNFSFLPSQIIINRNVTNGTYIFSCKLNILREDFTLTIDVFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDS-ICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRVSFVVIGIPKESYKLSSDLVITINSDKTLVNRNICVVCGNKPNMNNSKCYRLVEVAKSRL 1274
            P+ L  +P   V+ I   VTI+C   P  +   ++   + + F  +     VI+ NS++ H RC+CF C        +KCY I TS  L   P Q IYF+     + +   D +K +RSY   C      NF F  + I I  +V NG+Y   C +  L     L I++++  V   I P ES+ YL      V C   PI + Y  PDIRF+ INS      +   II+G  N T+ S IC  CGH  +P   IKC+  Y+ DVNVTI P   EL F     I C F P +   S + F +I +  E Y  + DL+I I  D +L+ RN+C +CGN   MN +KCY L+   +S++
Sbjct:  250 PMSLIFSPSKSVIIIKSNVTITCQTKPYPIDYSFIIIYTYDTFEHHIIDNTVILENSLLLHDRCICFRCISIGFGDVSKCYNIKTSTGLFLFPYQNIYFALKQDKIQIHFIDKYKLNRSYPTMCSFSIQGNFIFNINLITITSSVPNGSYDIECHIPNLSHRDVLRINIYAIDVTVTITPTESDVYLTDVPFTVQCQVSPIELLYILPDIRFLEINSEYYTNISNRDIIIGEFNQTDYSPICFKCGHQYMPQYDIKCFNSYEDDVNVTIVPLVDELRFMESQVIKCYFWPHFTKASLIQFRMISLQMEYYTKTDDLIILIKKDSSLIGRNVCAICGNITKMNGTKCYVLIGSPESQI 606
[Close]
BLAST of SMED30011393 vs. Planmine SMEST
Match: SMESG000004613.1 (SMESG000004613.1)

HSP 1 Score: 168.703 bits (426), Expect = 3.660e-45
Identity = 114/360 (31.67%), Postives = 165/360 (45.83%), Query Frame = 3 
Query:  207 PVRLDITPLARVLTIGRYVTISCSVNPVYVQLQYLYFSSSEFFIKNKNSTDVIISNSIIYHGRCLCFTCNGPYVIVETKCYKIY---TSLELKHSPIQKIYFSWTNTTLNVILTDNFKPDRSYIVKCQIDKASNFSFLPSQIIINRNVTNGTYIFSCKLNILREDFTLTIDVFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDS-ICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRVSFVVIGIPKESYKLSSDLVITINSDKTLVNRNICVVCGNKPNMNNSKCYRLVEVAKSRL 1274
            P+ L  +P   V+ I   VTI+C   P  +   ++   + + F                             + I++   YK +   +S  L   P Q IYF+     + +   D +K +RSY   C      NF F  + I I  +V NG+Y   C +  L     L I++++  V   I P ES+ YL      V C   PI + Y  PDIRF+ INS      +   II+G  N T+ S IC  CGH  +P   IKC+  Y+ DVNVTI P   EL F     I C F P +   S + F +I +  E Y  + DL+I I  D +L+ RN+C +CGN   MN +KCY L+   +S++
Sbjct:  250 PMSLIFSPSKSVIIIKSNVTITCQTKPYPIDYSFIIIYTYDTF----------------------------EHHIIDNTVYKYWFWRSSTGLFLFPYQNIYFALKQDKIQIHFIDKYKLNRSYPTMCSFSIQGNFIFNINLITITSSVPNGSYDIECHIPNLSHRDVLRINIYAIDVTVTITPTESDVYLTDVPFTVQCQVSPIELLYILPDIRFLEINSEYYTNISNRDIIIGEFNQTDYSPICFKCGHQYMPQYDIKCFNSYEDDVNVTIVPLVDELRFMESQVIKCYFWPHFTKASLIQFRMISLQMEYYTKTDDLIILIKKDSSLIGRNVCAICGNITKMNGTKCYVLIGSPESQI 581
[Close]
BLAST of SMED30011393 vs. Planmine SMEST
Match: SMESG000004613.1 (SMESG000004613.1)

HSP 1 Score: 168.703 bits (426), Expect = 3.381e-44
Identity = 114/360 (31.67%), Postives = 165/360 (45.83%), Query Frame = 3 
Query:  207 PVRLDITPLARVLTIGRYVTISCSVNPVYVQLQYLYFSSSEFFIKNKNSTDVIISNSIIYHGRCLCFTCNGPYVIVETKCYKIY---TSLELKHSPIQKIYFSWTNTTLNVILTDNFKPDRSYIVKCQIDKASNFSFLPSQIIINRNVTNGTYIFSCKLNILREDFTLTIDVFSDVVKFQIFPNESEHYLIHDQMEVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDS-ICATCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYVVYSRVSFVVIGIPKESYKLSSDLVITINSDKTLVNRNICVVCGNKPNMNNSKCYRLVEVAKSRL 1274
            P+ L  +P   V+ I   VTI+C   P  +   ++   + + F                             + I++   YK +   +S  L   P Q IYF+     + +   D +K +RSY   C      NF F  + I I  +V NG+Y   C +  L     L I++++  V   I P ES+ YL      V C   PI + Y  PDIRF+ INS      +   II+G  N T+ S IC  CGH  +P   IKC+  Y+ DVNVTI P   EL F     I C F P +   S + F +I +  E Y  + DL+I I  D +L+ RN+C +CGN   MN +KCY L+   +S++
Sbjct:  570 PMSLIFSPSKSVIIIKSNVTITCQTKPYPIDYSFIIIYTYDTF----------------------------EHHIIDNTVYKYWFWRSSTGLFLFPYQNIYFALKQDKIQIHFIDKYKLNRSYPTMCSFSIQGNFIFNINLITITSSVPNGSYDIECHIPNLSHRDVLRINIYAIDVTVTITPTESDVYLTDVPFTVQCQVSPIELLYILPDIRFLEINSEYYTNISNRDIIIGEFNQTDYSPICFKCGHQYMPQYDIKCFNSYEDDVNVTIVPLVDELRFMESQVIKCYFWPHFTKASLIQFRMISLQMEYYTKTDDLIILIKKDSSLIGRNVCAICGNITKMNGTKCYVLIGSPESQI 901
The following BLAST results are available for this feature:
BLAST of SMED30011393 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011393 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000001261.18.106e-12578.75SMESG000001261.1[more]
SMESG000016214.18.389e-7539.78SMESG000016214.1[more]
SMESG000004613.11.617e-5835.29SMESG000004613.1[more]
SMESG000004613.13.660e-4531.67SMESG000004613.1[more]
SMESG000004613.13.381e-4431.67SMESG000004613.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011393 ID=SMED30011393|Name=SMED30011393|organism=Schmidtea mediterranea sexual|type=transcript|length=1676bp
ATAAATATTTTCAGCATTATCATTTCTCCATTATTTGATTTATCAACAGA
ATTAAAAACATCGATATTCAAATCAAATAAATTAATCATTGTTAATAAAA
GAAAACAATGTAAAAATAAAAATTATTTAGATATTTTTCCTAAGATTTCT
TTACAATTTTATAATTATAACGATTTTTTATCATGCAAATTATTAATTCA
GTTCACCCAGTACGGCTGGACATAACGCCATTAGCTCGAGTATTAACAAT
CGGTAGGTACGTAACTATCAGCTGCAGTGTAAATCCAGTTTATGTACAAT
TACAATATCTATATTTTTCCTCTTCAGAATTTTTTATTAAAAATAAAAAC
TCAACGGATGTTATTATATCAAACTCGATTATTTATCATGGAAGATGTTT
GTGTTTCACTTGCAATGGTCCATACGTAATTGTTGAAACGAAATGTTACA
AAATTTACACTTCTTTGGAGCTGAAACACTCTCCCATTCAAAAAATATAT
TTTTCATGGACAAATACAACTCTAAATGTAATTTTAACCGACAATTTCAA
ACCGGATAGAAGCTATATTGTTAAGTGCCAAATAGACAAAGCGTCAAATT
TCAGCTTTTTGCCTAGTCAAATAATTATTAATAGAAATGTCACAAATGGA
ACTTACATTTTCTCATGTAAATTGAATATATTACGTGAAGATTTTACTTT
AACAATAGATGTATTTTCTGATGTTGTGAAATTTCAAATATTCCCAAATG
AATCAGAGCATTATTTAATACATGATCAGATGGAAGTTTCTTGCACAGCT
CTGCCTATTACTATTTATTATTATTATCCAGATATTCGGTTTATTTATAT
TAATTCAACTGACATCAAAAGATATAACAGGAGTGTGATTATTTTGGGTG
GAGGAAATAATACAAATGATAGTATTTGTGCGACTTGTGGCCACCCTGAA
ATACCAGCACAGATTATCAAATGTTATACACCATATGATGGAGATGTAAA
CGTTACAATAACTCCACGTGAATTTGAGTTATACTTTTATAGTAAACATG
GCATAATGTGCCGTTTTGAACCGAAATATGTTGTTTATTCAAGAGTGAGT
TTCGTAGTTATTGGAATACCAAAAGAATCCTATAAATTAAGCAGCGATCT
CGTTATCACAATTAATAGCGATAAAACGCTTGTAAATCGAAATATATGTG
TAGTTTGTGGAAATAAACCTAATATGAATAACTCAAAATGTTACAGATTA
GTTGAAGTTGCAAAAAGCAGATTGACAATGGGAAGGTGTAGCATAAAGGG
ACACCGATAGGAGATACCAAAATTTTGCTTTATTCCAGAAAAGACATCCA
AACAACGTAGTCTGTTTATGCAAGATCGTGCTCCAGAACTTTGTAGTTGA
ATCGCATGTAGTATATTCTCGACTAGGCTATTCGAAATCACCCAAACAAG
TCAATTTATAGAAAGAATGGAAATCTGTCCCACAACCAACTATCAACAAA
CTTGTTCATTCCATCCCATAACGTGTGTCTAATTCTTATCATGTTAGAAA
AGGGTCTACAAGAAAATAATCATATACACATTTTGGATTGCAGCCTTTCT
TTTTATGCGAGCGTCGAAATACTAATTGGTAGGCACTTGACTTAAGTTTA
CGCTTTTCTGTTTTTTTTGTCATAAA
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protein sequence of SMED30011393-orf-1

>SMED30011393-orf-1 ID=SMED30011393-orf-1|Name=SMED30011393-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=376bp
MQIINSVHPVRLDITPLARVLTIGRYVTISCSVNPVYVQLQYLYFSSSEF
FIKNKNSTDVIISNSIIYHGRCLCFTCNGPYVIVETKCYKIYTSLELKHS
PIQKIYFSWTNTTLNVILTDNFKPDRSYIVKCQIDKASNFSFLPSQIIIN
RNVTNGTYIFSCKLNILREDFTLTIDVFSDVVKFQIFPNESEHYLIHDQM
EVSCTALPITIYYYYPDIRFIYINSTDIKRYNRSVIILGGGNNTNDSICA
TCGHPEIPAQIIKCYTPYDGDVNVTITPREFELYFYSKHGIMCRFEPKYV
VYSRVSFVVIGIPKESYKLSSDLVITINSDKTLVNRNICVVCGNKPNMNN
SKCYRLVEVAKSRLTMGRCSIKGHR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
PLANA:0002109X1 cell
PLANA:0002111X2 cell