SMED30011345

Overview


Name	SMED30011345
Smed ID	SMED30011345
Length (bp)	705

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30011345 (SMED30011345) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011345 (SMED30011345) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30011345

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
Smed sexual biotype	SMED30011345	SMESG000055713.1 SMESG000055712.1 SMESG000055711.1 SMESG000055686.1 SMESG000055678.1 SMESG000024024.1	Contig50775	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30011345	SMESG000055713.1 SMESG000055712.1 SMESG000055711.1 SMESG000055686.1 SMESG000055678.1 SMESG000024024.1	Contig50775	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
testis	SMED30011345	SMESG000055713.1 SMESG000055712.1 SMESG000055711.1 SMESG000055686.1 SMESG000055678.1 SMESG000024024.1	Contig5606	newmark_ests	PMID:28434803 Rouhana et al., 2017
testis	SMED30011345	SMESG000055713.1 SMESG000055712.1 SMESG000055711.1 SMESG000055686.1 SMESG000055678.1 SMESG000024024.1	Contig5606	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017
testis	SMED30011345	SMESG000020882.1 SMESG000020884.1	Contig5606	newmark_ests	PMID:28434803 Rouhana et al., 2017
testis	SMED30011345	SMESG000020882.1 SMESG000020884.1	Contig5606	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017

Note: Hover over icons to view figure legend

Alignments

SMED30011345 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.022266:4000..4704 -	3067
v31.009029:2854..3487 +	2082
v31.026184:3871..4522 +	2062
v31.006351:20498..21171 -	2029
v31.006351:15616..16327 +	2027
v31.009029:12355..12953 -	2019
v31.009029:6514..7216 +	1999
v31.012411:6906..7551 +	1981
v31.027785:5323..5974 +	1966
v31.011185:2911..3604 +	1954
v31.013210:11067..11792 -	1946
v31.003367:20064..20696 -	1818
v31.001095:17141..17830 -	1553
v31.001095:15136..15772 -	1475

Homology

[Close]

BLAST of SMED30011345 vs. Ensembl Human
Match: DYNLL2 (dynein light chain LC8-type 2 [Source:HGNC Symbol;Acc:HGNC:24596])

HSP 1 Score: 172.94 bits (437), Expect = 2.809e-55
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Human
Match: DYNLL1 (dynein light chain LC8-type 1 [Source:HGNC Symbol;Acc:HGNC:15476])

HSP 1 Score: 171.785 bits (434), Expect = 9.740e-55
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMSEEMQQD++E A  A+EKYN+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMSEEMQQD++E A  A+EKYN+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMSEEMQQD++E A  A+EKYN+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMSEEMQQD++E A  A+EKYN+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Celegans
Match: dlc-1 (Dynein light chain 1, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q22799])

HSP 1 Score: 170.244 bits (430), Expect = 1.501e-54
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMS++MQQDAI+ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMS++MQQDAI+ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMS++MQQDAI+ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Celegans
Match: dlc-5 (Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q65XS9])

HSP 1 Score: 92.4337 bits (228), Expect = 5.041e-23
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = -1

Query:   43 AVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 294
            A ++++ M   M+Q+A  LAA ++  Y++E DIA +LK  FDR+Y P WH I G++FGS+VT E   FIYF +G +A +LFK+ 
Sbjct:   58 ADVQHSRMPRHMEQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFRIGTIAFMLFKTS 141

[Close]

BLAST of SMED30011345 vs. Ensembl Celegans
Match: dlc-2 (Probable dynein light chain 2, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q21557])

HSP 1 Score: 80.1073 bits (196), Expect = 1.925e-19
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M++ K  +K  DM +  +   I +   A   YN++KD+AA++K+E D+K+  TWH I G+ FGS V++E  HFI     +V ++++K G
Sbjct:    1 MSEEKIEVKETDMEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILLKCNKVNVMIYKCG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070706)

HSP 1 Score: 172.17 bits (435), Expect = 3.514e-55
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA++ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070704)

HSP 1 Score: 172.17 bits (435), Expect = 3.514e-55
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA++ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0307065)

HSP 1 Score: 172.17 bits (435), Expect = 3.514e-55
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA++ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0070707)

HSP 1 Score: 172.17 bits (435), Expect = 3.514e-55
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA++ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Fly
Match: ctp (gene:FBgn0011760 transcript:FBtr0474174)

HSP 1 Score: 177.178 bits (448), Expect = 8.769e-55
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA++ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Zebrafish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 174.481 bits (441), Expect = 4.826e-56
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA+E A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA+E A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Zebrafish
Match: dynll2a (dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:ZDB-GENE-030828-11])

HSP 1 Score: 174.481 bits (441), Expect = 6.003e-56
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Zebrafish
Match: dynll2b (dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:ZDB-GENE-050320-132])

HSP 1 Score: 174.481 bits (441), Expect = 6.003e-56
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Xenopus
Match: dynll2 (dynein light chain LC8-type 2 [Source:NCBI gene;Acc:100038056])

HSP 1 Score: 172.94 bits (437), Expect = 2.546e-55
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Xenopus
Match: dynll1 (dynein light chain LC8-type 1 [Source:NCBI gene;Acc:448652])

HSP 1 Score: 168.703 bits (426), Expect = 1.409e-53
Identity = 75/89 (84.27%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M++RKAVIKNADMSEEMQQDA++ A  A+EK+N+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Xenopus
Match: ENSXETT00000015639.1 (pep primary_assembly:Xenopus_tropicalis_v9.1:2:48978690:48979872:1 gene:ENSXETG00000009974.1 transcript:ENSXETT00000015639.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.4261 bits (215), Expect = 1.286e-21
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1

Query:   40 LSRFEQKNCDLTQIEIDEMLRFMCHITAKVPTDNCMPSWIVFSVEFFLQISSDIFLHIVFLHGQCSQLDGILLHFFTHICILDNGFSISH 309
            L+RF+++NC+L QI++DE+L FMC+I AKV  ++ +P        + L I S++FL+I+ LH  C  ++ ILLH F H+ ILDN  S+ H
Sbjct:    3 LARFKEENCNLAQIKVDEVLCFMCYIAAKVSANDAVPI-------YLLDIGSNVFLNIILLHCLCGTVNSILLHVFRHVSILDNSLSVRH 85

[Close]

BLAST of SMED30011345 vs. Ensembl Xenopus
Match: rnf181 (ring finger protein 181 [Source:Xenbase;Acc:XB-GENE-964051])

HSP 1 Score: 69.707 bits (169), Expect = 7.475e-15
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = -1

Query:   46 AVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKE-FDRKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAILLFKS 294
             +I++ DM EEM+ + +EL   A EK+    + AA + KE  D+K+  +WH ++G  FG  +THE K+ +Y F+ G +AI ++K 
Sbjct:   21 PLIRHTDMPEEMRVETMELCVTACEKFASNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYMFFGGSLAICVWKC 105

[Close]

BLAST of SMED30011345 vs. Ensembl Mouse
Match: Dynll2 (dynein light chain LC8-type 2 [Source:MGI Symbol;Acc:MGI:1915347])

HSP 1 Score: 172.94 bits (437), Expect = 1.929e-55
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Mouse
Match: Dynll1 (dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457])

HSP 1 Score: 171.785 bits (434), Expect = 6.687e-55
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMSEEMQQD++E A  A+EKYN+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M DRKAVIKNADMSEEMQQD++E A  A+EKYN+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. UniProt/SwissProt
Match: sp|Q78P75|DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.349e-54
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. UniProt/SwissProt
Match: sp|Q9D0M5|DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.349e-54
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. UniProt/SwissProt
Match: sp|Q96FJ2|DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.349e-54
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. UniProt/SwissProt
Match: sp|Q3MHR3|DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.349e-54
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. UniProt/SwissProt
Match: sp|Q24117|DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.523e-54
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSEEMQQDA++ A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHET+HFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. TrEMBL
Match: A0A1U7TEH9 (Dynein light chain OS=Tarsius syrichta OX=1868482 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.816e-54
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = -1

Query:   43 VTMTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 315
            VTM+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   14 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 104

[Close]

BLAST of SMED30011345 vs. TrEMBL
Match: A0A5G2R8I6 (Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.837e-54
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = -1

Query:   43 VTMTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 315
            VTM+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   43 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 133

[Close]

BLAST of SMED30011345 vs. TrEMBL
Match: A0A4X1SKB8 (Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.837e-54
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = -1

Query:   43 VTMTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 315
            VTM+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   43 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 133

[Close]

BLAST of SMED30011345 vs. TrEMBL
Match: A0A452SXX3 (Dynein light chain OS=Ursus maritimus OX=29073 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.794e-54
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = -1

Query:   43 VTMTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 315
            VTM+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   46 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 136

[Close]

BLAST of SMED30011345 vs. TrEMBL
Match: A0A4U1EW58 (Dynein light chain OS=Monodon monoceros OX=40151 GN=EI555_000976 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 6.061e-54
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = -1

Query:   43 VTMTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 315
            VTM+DRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   44 VTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 134

[Close]

BLAST of SMED30011345 vs. Ensembl Cavefish
Match: ENSAMXT00000047143.1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528])

HSP 1 Score: 174.481 bits (441), Expect = 5.087e-56
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Cavefish
Match: dynll2b (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:103041528])

HSP 1 Score: 174.481 bits (441), Expect = 5.087e-56
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSE+MQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Cavefish
Match: dynll1 (dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961])

HSP 1 Score: 157.147 bits (396), Expect = 7.396e-49
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = -1

Query:   70 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQ 309
            M+DRKAVIKNADMSEEMQQDA+E A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQ
Sbjct:    1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80

[Close]

BLAST of SMED30011345 vs. Ensembl Cavefish
Match: ENSAMXT00000013314.2 (pep primary_assembly:Astyanax_mexicanus-2.0:1:23335261:23337700:1 gene:ENSAMXG00000012944.2 transcript:ENSAMXT00000013314.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.0409 bits (214), Expect = 7.990e-22
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1

Query:   43 SRFEQKNCDLTQIEIDEMLRFMCHITAKVPTDNCMPSWIVFSVEFFLQISSDIFLHIVFLHGQCSQLDGILLHFFTHICILDNGFSISH 309
            +RFEQ+   L Q+E+DE+LR +  +TA+VP  N +PSW+V  + +   +  D+ L++V LH  C  +D +LLH   H+ +LD+ FS+SH
Sbjct:    4 ARFEQEYGHLAQVEVDEVLRLVGDVTAEVPAHNAVPSWVVL-LAYLFDVRCDVLLYVVLLHCLCCTVDCVLLHVLRHVSVLDHSFSVSH 91

[Close]

BLAST of SMED30011345 vs. Ensembl Cavefish
Match: dnal4b (dynein axonemal light chain 4 [Source:NCBI gene;Acc:103029781])

HSP 1 Score: 70.0922 bits (170), Expect = 2.557e-15
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = -1

Query:   46 VIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKE-FDRKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAILLFKS 291
            +I++ DM EEM+ + +EL   A EK+    + AA + KE  D+K+  +WH ++G  FG  VTHE K+ +Y F+ G +A+ ++K 
Sbjct:   22 LIRHTDMPEEMRVETMELCVTACEKFATNNESAAKMIKESMDKKFGSSWHVVIGEGFGFEVTHEVKNLLYMFFGGSLAVCVWKC 105

[Close]

BLAST of SMED30011345 vs. Ensembl Yeast
Match: DYN2 (Cytoplasmic light chain dynein, microtubule motor protein; required for intracellular transport and cell division; involved in mitotic spindle positioning; forms complex with dynein intermediate chain Pac11p that promotes Dyn1p homodimerization, potentiates motor processivity; Dyn2p-Pac11p complex important for interaction of dynein motor complex with dynactin complex; acts as molecular glue to dimerize, stabilize Nup82-Nsp1-Nup159 complex module of cytoplasmic pore filaments [Source:SGD;Acc:S000002832])

HSP 1 Score: 102.064 bits (253), Expect = 1.463e-28
Identity = 40/83 (48.19%), Postives = 65/83 (78.31%), Query Frame = -1

Query:   46 AVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 294
             ++K +D+++++++D + ++  A++KY +E+DIA  +KK+ D KY  TWH IVG+NFGSYVTHE  HF+YFY+G +A L+FK+
Sbjct:    9 PIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKT 91

[Close]

BLAST of SMED30011345 vs. Ensembl Nematostella
Match: EDO44582 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI5])

HSP 1 Score: 165.236 bits (417), Expect = 6.132e-53
Identity = 74/89 (83.15%), Postives = 84/89 (94.38%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M++RKAVIKNADM+E+MQ DAIE A  A+EK+N+EKDIAA++KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMAEDMQTDAIECATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Nematostella
Match: EDO38557 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCP2])

HSP 1 Score: 72.0182 bits (175), Expect = 2.368e-16
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = -1

Query:   46 VIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKE-FDRKYNPTWHAIVGRNFGSYVTHETKHFIY-FYLGQVAILLFKS 291
            +I+ +DM++EM+ +A+EL   A EK++   + AA + KE  D+K+  +WHA+VG  FG  +THE ++ +Y F+ G  AI ++K 
Sbjct:   26 LIRYSDMNDEMRTEAMELCVTACEKFSNNNETAAKMIKESMDKKFGASWHAVVGEGFGFEITHEVRNLLYMFFGGTTAICIWKC 109

[Close]

BLAST of SMED30011345 vs. Ensembl Medaka
Match: ENSORLT00000005747.2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101162462])

HSP 1 Score: 175.637 bits (444), Expect = 1.591e-56
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSEEMQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Medaka
Match: dynll1 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101171417])

HSP 1 Score: 172.94 bits (437), Expect = 1.489e-55
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+DRKAVIKNADMSE+MQQDA+E A  A+EKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Medaka
Match: DYNLL2 (dynein light chain 2, cytoplasmic [Source:NCBI gene;Acc:101174042])

HSP 1 Score: 171.014 bits (432), Expect = 1.108e-54
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            M+D+KAVIKNADMS+EMQQDA++ A  AMEKYN+EKDIAAY+KKEFD+KYNPTWH IVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDKKAVIKNADMSDEMQQDAVDCAMQAMEKYNIEKDIAAYVKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of SMED30011345 vs. Ensembl Medaka
Match: ENSORLT00000028916.1 (pep primary_assembly:ASM223467v1:9:6243543:6247014:-1 gene:ENSORLG00000022487.1 transcript:ENSORLT00000028916.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 87.8113 bits (216), Expect = 3.840e-22
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1

Query:   40 LSRFEQKNCDLTQIEIDEMLRFMCHITAKVPTDNCMPSWIVFSVEFFLQISSDIFLHIVFLHGQCSQLDGILLHFFTHICILDNGFSISH 309
            LSR EQ+N  LTQ+E++EML  + H+ A+VP +N +PS +VF VE       D+FL +V L G C  L G+LLH   H+ I D+  S+ H
Sbjct:    3 LSRLEQQNGHLTQVEVNEMLGLVSHVAAEVPPNNAVPSRVVFLVELL-----DVFLDVVLLQGLCGTLHGVLLHVLRHVGIFDHCLSVRH 87

[Close]

BLAST of SMED30011345 vs. Ensembl Medaka
Match: ENSORLT00000006686.2 (pep primary_assembly:ASM223467v1:14:12601680:12602092:1 gene:ENSORLG00000005302.2 transcript:ENSORLT00000006686.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 82.4185 bits (202), Expect = 6.885e-20
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 1

Query:   43 SRFEQKNCDLTQIEIDEMLRFMCHITAKVPTDNCMPSWIVFSVEF-----FLQISSDIFLHIVFLHGQCSQLDGILLHFFTHICILDN 291
            +  +Q+N  LTQ+E+DEMLR + HI  KVP +N +P  +VF V+F      L I S+IFL IV LHG    +  ILLHF  H+CI D+
Sbjct:   19 AGLKQQNSHLTQVEVDEMLRLVGHIATKVPPNNAVPCRVVFLVKFLDPTYLLDICSNIFLDIVLLHGLHGTVHCILLHFIRHVCIFDH 106

[Close]

BLAST of SMED30011345 vs. Planmine SMEST
Match: SMESG000055712.1 (SMESG000055712.1)

HSP 1 Score: 185.267 bits (469), Expect = 1.757e-60
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of SMED30011345 vs. Planmine SMEST
Match: SMESG000055711.1 (SMESG000055711.1)

HSP 1 Score: 185.267 bits (469), Expect = 1.757e-60
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of SMED30011345 vs. Planmine SMEST
Match: SMESG000055686.1 (SMESG000055686.1)

HSP 1 Score: 185.267 bits (469), Expect = 1.757e-60
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of SMED30011345 vs. Planmine SMEST
Match: SMESG000024024.1 (SMESG000024024.1)

HSP 1 Score: 185.267 bits (469), Expect = 1.757e-60
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNP+WHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of SMED30011345 vs. Planmine SMEST
Match: SMESG000055713.1 (SMESG000055713.1)

HSP 1 Score: 182.57 bits (462), Expect = 2.261e-59
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = -1

Query:   43 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNPTWHAIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 309
            MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYN +WHAIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MTDRKAVIKNADMSEEMQQDAIELAALAMEKYNVEKDIAAYLKKEFDRKYNSSWHAIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

The following BLAST results are available for this feature:

BLAST of SMED30011345 vs. Ensembl Human
BLAST of SMED30011345 vs. Ensembl Celegans
BLAST of SMED30011345 vs. Ensembl Fly
BLAST of SMED30011345 vs. Ensembl Zebrafish
BLAST of SMED30011345 vs. Ensembl Xenopus
BLAST of SMED30011345 vs. Ensembl Mouse
BLAST of SMED30011345 vs. UniProt/SwissProt
BLAST of SMED30011345 vs. TrEMBL
BLAST of SMED30011345 vs. Ensembl Cavefish
BLAST of SMED30011345 vs. Ensembl Sea Lamprey
BLAST of SMED30011345 vs. Ensembl Yeast
BLAST of SMED30011345 vs. Ensembl Nematostella
BLAST of SMED30011345 vs. Ensembl Medaka
BLAST of SMED30011345 vs. Planmine SMEST

BLAST of SMED30011345 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
DYNLL2	2.809e-55	87.64	dynein light chain LC8-type 2 [Source:HGNC Symbol;...	[more]
DYNLL1	9.740e-55	86.52	dynein light chain LC8-type 1 [Source:HGNC Symbol;...	[more]
DYNLL1	9.740e-55	86.52	dynein light chain LC8-type 1 [Source:HGNC Symbol;...	[more]
DYNLL1	9.740e-55	86.52	dynein light chain LC8-type 1 [Source:HGNC Symbol;...	[more]
DYNLL1	9.740e-55	86.52	dynein light chain LC8-type 1 [Source:HGNC Symbol;...	[more]

BLAST of SMED30011345 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
dlc-1	1.501e-54	86.52	Dynein light chain 1, cytoplasmic [Source:UniProt...	[more]
dlc-1	1.501e-54	86.52	Dynein light chain 1, cytoplasmic [Source:UniProt...	[more]
dlc-1	1.501e-54	86.52	Dynein light chain 1, cytoplasmic [Source:UniProt...	[more]
dlc-5	5.041e-23	46.43	Dynein Light Chain [Source:UniProtKB/TrEMBL;Acc:Q...	[more]
dlc-2	1.925e-19	37.08	Probable dynein light chain 2, cytoplasmic [Sourc...	[more]

BLAST of SMED30011345 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ctp	3.514e-55	86.52	gene:FBgn0011760 transcript:FBtr0070706	[more]
ctp	3.514e-55	86.52	gene:FBgn0011760 transcript:FBtr0070704	[more]
ctp	3.514e-55	86.52	gene:FBgn0011760 transcript:FBtr0307065	[more]
ctp	3.514e-55	86.52	gene:FBgn0011760 transcript:FBtr0070707	[more]
ctp	8.769e-55	86.52	gene:FBgn0011760 transcript:FBtr0474174	[more]

BLAST of SMED30011345 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
dynll1	4.826e-56	88.76	dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z...	[more]
dynll1	4.826e-56	88.76	dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z...	[more]
dynll2a	6.003e-56	88.76	dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:...	[more]
dynll2b	6.003e-56	88.76	dynein, light chain, LC8-type 2b [Source:ZFIN;Acc:...	[more]
dynll2a	6.003e-56	88.76	dynein, light chain, LC8-type 2a [Source:ZFIN;Acc:...	[more]

BLAST of SMED30011345 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
dynll2	2.546e-55	87.64	dynein light chain LC8-type 2 [Source:NCBI gene;Ac...	[more]
dynll1	1.409e-53	84.27	dynein light chain LC8-type 1 [Source:NCBI gene;Ac...	[more]
ENSXETT00000015639.1	1.286e-21	44.44	pep primary_assembly:Xenopus_tropicalis_v9.1:2:489...	[more]
rnf181	7.475e-15	37.65	ring finger protein 181 [Source:Xenbase;Acc:XB-GEN...	[more]

BLAST of SMED30011345 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Dynll2	1.929e-55	87.64	dynein light chain LC8-type 2 [Source:MGI Symbol;A...	[more]
Dynll2	1.929e-55	87.64	dynein light chain LC8-type 2 [Source:MGI Symbol;A...	[more]
Dynll2	1.929e-55	87.64	dynein light chain LC8-type 2 [Source:MGI Symbol;A...	[more]
Dynll1	6.687e-55	86.52	dynein light chain LC8-type 1 [Source:MGI Symbol;A...	[more]
Dynll1	6.687e-55	86.52	dynein light chain LC8-type 1 [Source:MGI Symbol;A...	[more]

BLAST of SMED30011345 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q78P75\|DYL2_RAT	1.349e-54	87.64	Dynein light chain 2, cytoplasmic OS=Rattus norveg...	[more]
sp\|Q9D0M5\|DYL2_MOUSE	1.349e-54	87.64	Dynein light chain 2, cytoplasmic OS=Mus musculus ...	[more]
sp\|Q96FJ2\|DYL2_HUMAN	1.349e-54	87.64	Dynein light chain 2, cytoplasmic OS=Homo sapiens ...	[more]
sp\|Q3MHR3\|DYL2_BOVIN	1.349e-54	87.64	Dynein light chain 2, cytoplasmic OS=Bos taurus OX...	[more]
sp\|Q24117\|DYL1_DROME	3.523e-54	86.52	Dynein light chain 1, cytoplasmic OS=Drosophila me...	[more]

BLAST of SMED30011345 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1U7TEH9	3.816e-54	87.91	Dynein light chain OS=Tarsius syrichta OX=1868482 ...	[more]
A0A5G2R8I6	3.837e-54	87.91	Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2...	[more]
A0A4X1SKB8	3.837e-54	87.91	Dynein light chain OS=Sus scrofa OX=9823 GN=DYNLL2...	[more]
A0A452SXX3	5.794e-54	87.91	Dynein light chain OS=Ursus maritimus OX=29073 GN=...	[more]
A0A4U1EW58	6.061e-54	87.91	Dynein light chain OS=Monodon monoceros OX=40151 G...	[more]

BLAST of SMED30011345 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000047143.1	5.087e-56	88.76	dynein light chain 2, cytoplasmic [Source:NCBI gen...	[more]
dynll2b	5.087e-56	88.76	dynein light chain 2, cytoplasmic [Source:NCBI gen...	[more]
dynll1	7.396e-49	87.50	dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:Z...	[more]
ENSAMXT00000013314.2	7.990e-22	41.57	pep primary_assembly:Astyanax_mexicanus-2.0:1:2333...	[more]
dnal4b	2.557e-15	38.10	dynein axonemal light chain 4 [Source:NCBI gene;Ac...	[more]

BLAST of SMED30011345 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30011345 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
DYN2	1.463e-28	48.19	Cytoplasmic light chain dynein, microtubule motor ...	[more]

BLAST of SMED30011345 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO44582	6.132e-53	83.15	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38557	2.368e-16	39.29	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30011345 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000005747.2	1.591e-56	89.89	dynein light chain 2, cytoplasmic [Source:NCBI gen...	[more]
dynll1	1.489e-55	87.64	dynein light chain 2, cytoplasmic [Source:NCBI gen...	[more]
DYNLL2	1.108e-54	86.52	dynein light chain 2, cytoplasmic [Source:NCBI gen...	[more]
ENSORLT00000028916.1	3.840e-22	45.56	pep primary_assembly:ASM223467v1:9:6243543:6247014...	[more]
ENSORLT00000006686.2	6.885e-20	47.73	pep primary_assembly:ASM223467v1:14:12601680:12602...	[more]

BLAST of SMED30011345 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000055712.1	1.757e-60	97.75	SMESG000055712.1	[more]
SMESG000055711.1	1.757e-60	97.75	SMESG000055711.1	[more]
SMESG000055686.1	1.757e-60	97.75	SMESG000055686.1	[more]
SMESG000024024.1	1.757e-60	97.75	SMESG000024024.1	[more]
SMESG000055713.1	2.261e-59	96.63	SMESG000055713.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30011345 ID=SMED30011345|Name=SMED30011345|organism=Schmidtea mediterranea sexual|type=transcript|length=705bp
TCAAAAATATTATTTTTGATAAAAATCAAAGCTCAAAATTTATCCCGATT
TGAACAAAAGAATTGCGACCTGACCCAAATAGAAATAGATGAAATGCTTC
GTTTCATGTGTCACATAACTGCCAAAGTTCCTACCGACAATTGCATGCCA
AGTTGGATTGTATTTTCTGTCGAATTCTTTCTTCAAATAAGCAGCGATAT
CTTTCTCCACATTGTATTTCTCCATGGCCAATGCAGCCAGCTCGATGGCA
TCTTGTTGCATTTCTTCACTCATATCTGCATTCTTGATAACGGCTTTTCT
ATCAGTCATTGTGACGAGATTATTGTTGTTGTTGATGATGATGATGAATT
CTCTGCGTCCGATCTCCGTATTTATACTATTCCGTCAAGCTATTTATTCT
GCGTGCCGTTTTCCATTGTTGTCTTTGAGCTGTCAGATTTTAGTAGAATA
GTTGAATAATTTTCTGTTGTTGCAAGTTGATTCTTTTTGTTGCGTTACGT
AATAATATAAATAGATATAATTCACAATGAGAGTCATTTTTGATTATATT
TTCTTTTAAAAATAAAACAAAAGATTTCCATGAATTGTAAGTCGATTATT
TCGCATGGCGAAAAAATAACAATAACACAAATCTAGTGATCATTTGACCC
TTGCATGTGATTATTTCGTGCCAATTCACACAGCATTCATGAGTTTTGTT
TTATT

protein sequence of SMED30011345-orf-1

>SMED30011345-orf-1 ID=SMED30011345-orf-1|Name=SMED30011345-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=153bp
SKILFLIKIKAQNLSRFEQKNCDLTQIEIDEMLRFMCHITAKVPTDNCMP
SWIVFSVEFFLQISSDIFLHIVFLHGQCSQLDGILLHFFTHICILDNGFS
ISHCDEIIVVVDDDDEFSASDLRIYTIPSSYLFCVPFSIVVFELSDFSRI
VE*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR037177	DLC_sf
IPR001372	Dynein_light_chain_typ-1/2
IPR019763	Dynein_light_1/2_CS

Vocabulary: **cellular component**
Term	Definition
GO:0030286	dynein complex
GO:0005875	microtubule associated complex

Vocabulary: **biological process**
Term	Definition
GO:0007017	microtubule-based process

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..64 e-value: 8.0E-29 score: 111.8
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..65 e-value: 1.0E-25 score: 89.9
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..65
IPR037177	Dynein light chain superfamily	GENE3D	G3DSA:3.30.740.10		coord: 1..65 e-value: 7.2E-30 score: 104.9
IPR037177	Dynein light chain superfamily	SUPERFAMILY	SSF54648	DLC	coord: 3..65
None	No IPR available	PANTHER	PTHR11886:SF62	DYNEIN LIGHT CHAIN	coord: 1..65

Main menu

SMED30011345

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 6

Owlery

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