Tetraspanin
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011329 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of Tetraspanin vs. Ensembl Fly
Match: Tsp66E (gene:FBgn0035936 transcript:FBtr0076507) HSP 1 Score: 50.8322 bits (120), Expect = 5.839e-7 Identity = 59/254 (23.23%), Postives = 110/254 (43.31%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCAT--SQKTQLNTEGCLRVVLN-LVKSNLVAVICICIVLCMFEVLCILFA 938 ++G++ G+W+ V+K++L +L+ V + + F T A++ +A L+++G +F + F G G+ +E++C+L TY + +++A+I G K K K L+ + L N + ++ +M CCGI D DF D W N++ P CC L + P D C T S +GC V L++ + ++ I + + ++ + FA Sbjct: 23 VLGTIIFGVGLWLAVDKHSLIALLKLVE-SERIEQF--TQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYGTFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSY---SLGENVDATSLMWNQLMGNFGCCGINDYHDF-DASPAWVNG--KGNRTIPDACCILKDVAKLVPR-------------DEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLIILAFA 254
BLAST of Tetraspanin vs. Ensembl Fly
Match: Tsp66E (gene:FBgn0035936 transcript:FBtr0076506) HSP 1 Score: 50.8322 bits (120), Expect = 5.839e-7 Identity = 59/254 (23.23%), Postives = 110/254 (43.31%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCAT--SQKTQLNTEGCLRVVLN-LVKSNLVAVICICIVLCMFEVLCILFA 938 ++G++ G+W+ V+K++L +L+ V + + F T A++ +A L+++G +F + F G G+ +E++C+L TY + +++A+I G K K K L+ + L N + ++ +M CCGI D DF D W N++ P CC L + P D C T S +GC V L++ + ++ I + + ++ + FA Sbjct: 23 VLGTIIFGVGLWLAVDKHSLIALLKLVE-SERIEQF--TQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYGTFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSY---SLGENVDATSLMWNQLMGNFGCCGINDYHDF-DASPAWVNG--KGNRTIPDACCILKDVAKLVPR-------------DEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLIILAFA 254
BLAST of Tetraspanin vs. Ensembl Fly
Match: Tsp66E (gene:FBgn0035936 transcript:FBtr0076508) HSP 1 Score: 50.8322 bits (120), Expect = 5.839e-7 Identity = 59/254 (23.23%), Postives = 110/254 (43.31%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCAT--SQKTQLNTEGCLRVVLN-LVKSNLVAVICICIVLCMFEVLCILFA 938 ++G++ G+W+ V+K++L +L+ V + + F T A++ +A L+++G +F + F G G+ +E++C+L TY + +++A+I G K K K L+ + L N + ++ +M CCGI D DF D W N++ P CC L + P D C T S +GC V L++ + ++ I + + ++ + FA Sbjct: 23 VLGTIIFGVGLWLAVDKHSLIALLKLVE-SERIEQF--TQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYGTFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSY---SLGENVDATSLMWNQLMGNFGCCGINDYHDF-DASPAWVNG--KGNRTIPDACCILKDVAKLVPR-------------DEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLIILAFA 254
BLAST of Tetraspanin vs. Ensembl Xenopus
Match: gpr88 (G protein-coupled receptor 88 [Source:Xenbase;Acc:XB-GENE-984668]) HSP 1 Score: 49.6766 bits (117), Expect = 2.307e-6 Identity = 42/186 (22.58%), Postives = 83/186 (44.62%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILR 953 +ENKC+L + + + LA++ + + + ENL K+ +KK ++G ++ +F+ + S+M CCG+ DF D R + + P CC+ + S+ + ++ C T + N +GC V++N V+ + + I + E+L ++FA + R Sbjct: 78 RENKCLLVFFFMFILVIFLAELSAAILAFLFR---ENLSKDFFAREVKKHYHG--DNSTEVFSSTWNSIMITFGCCGVNGPEDFNDAH---RFRAMHPFAPVPEACCR------REVQSRAG-----KIVSRAECLTGGENYQNRQGCYSVIVNSVEPYVYIAGALAIGVLAIELLSMVFAMCLFR 244
BLAST of Tetraspanin vs. Ensembl Mouse
Match: Tspan3 (tetraspanin 3 [Source:MGI Symbol;Acc:MGI:1928098]) HSP 1 Score: 51.2174 bits (121), Expect = 5.782e-7 Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYIL 950 +E++C L T+ F++ V + ++ + V V + K EN + S++ + K +NG TNS ++ + Q+ CCGI + +D+ +TD W ++ KNQS P+ CC+ + N + +A+PS L EGC +V+ ++ L+ VI + ++L +L AC +L Sbjct: 77 RESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT-YNG---TNSDAASRAIDYVQRQLHCCGIHNYSDWENTD--WFKET--KNQSVPLSCCR-------ETAKSCNGS-----LANPS-------DLYAEGCEALVVKKLQEILMHVIWAALAFAAIQLLGMLCACIVL 234
BLAST of Tetraspanin vs. Ensembl Mouse
Match: Tspan3 (tetraspanin 3 [Source:MGI Symbol;Acc:MGI:1928098]) HSP 1 Score: 50.8322 bits (120), Expect = 8.376e-7 Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYIL 950 +E++C L T+ F++ V + ++ + V V + K EN + S++ + K +NG TNS ++ + Q+ CCGI + +D+ +TD W ++ KNQS P+ CC+ + N + +A+PS L EGC +V+ ++ L+ VI + ++L +L AC +L Sbjct: 80 RESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT-YNG---TNSDAASRAIDYVQRQLHCCGIHNYSDWENTD--WFKET--KNQSVPLSCCR-------ETAKSCNGS-----LANPS-------DLYAEGCEALVVKKLQEILMHVIWAALAFAAIQLLGMLCACIVL 237
BLAST of Tetraspanin vs. Ensembl Mouse
Match: Tspan1 (tetraspanin 1 [Source:MGI Symbol;Acc:MGI:1914055]) HSP 1 Score: 49.2914 bits (116), Expect = 2.146e-6 Identity = 56/241 (23.24%), Postives = 104/241 (43.15%), Query Frame = 3 Query: 156 MKRFLKIKIMIIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFV--AXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSN 872 M + I + G+ L GIW+ V+ + K+ F + SSSA+ FV LI G +F++ F GC+G+ ENKC+L + ++ + +A+I V V E L + ++K++ + FT+++ + M ++ CCG + TDF + + V +N+ P CC +P C + + +GC + +L+ +++N Sbjct: 10 MMFLFNLLIFLCGAALLAVGIWVSVDGTSFLKV------------FGSLSSSAMQFVNVGYFLIAAGAVLFILGFLGCYGAHSENKCVLMMFFSILLIIFIAEIAGAVVALVYTTLAEQFLTLLVVPAIEKDYG-----YQTDFTQVWNTTMEELHCCGFNNYTDFNAS------RFVKENKVFPPPCCANPGNHTVEP-----------------CTEEKAKSMKVQGCFKEILHRIRAN 210
BLAST of Tetraspanin vs. Ensembl Mouse
Match: Tspan1 (tetraspanin 1 [Source:MGI Symbol;Acc:MGI:1914055]) HSP 1 Score: 48.9062 bits (115), Expect = 2.366e-6 Identity = 56/241 (23.24%), Postives = 104/241 (43.15%), Query Frame = 3 Query: 156 MKRFLKIKIMIIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFV--AXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSN 872 M + I + G+ L GIW+ V+ + K+ F + SSSA+ FV LI G +F++ F GC+G+ ENKC+L + ++ + +A+I V V E L + ++K++ + FT+++ + M ++ CCG + TDF + + V +N+ P CC +P C + + +GC + +L+ +++N Sbjct: 10 MMFLFNLLIFLCGAALLAVGIWVSVDGTSFLKV------------FGSLSSSAMQFVNVGYFLIAAGAVLFILGFLGCYGAHSENKCVLMMFFSILLIIFIAEIAGAVVALVYTTLAEQFLTLLVVPAIEKDYG-----YQTDFTQVWNTTMEELHCCGFNNYTDFNAS------RFVKENKVFPPPCCANPGNHTVEP-----------------CTEEKAKSMKVQGCFKEILHRIRAN 210
BLAST of Tetraspanin vs. UniProt/SwissProt
Match: sp|Q9QY33|TSN3_MOUSE (Tetraspanin-3 OS=Mus musculus OX=10090 GN=Tspan3 PE=1 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 4.045e-6 Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYIL 950 +E++C L T+ F++ V + ++ + V V + K EN + S++ + K +NG TNS ++ + Q+ CCGI + +D+ +TD W ++ KNQS P+ CC+ + N + +A+PS L EGC +V+ ++ L+ VI + ++L +L AC +L Sbjct: 77 RESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT-YNG---TNSDAASRAIDYVQRQLHCCGIHNYSDWENTD--WFKET--KNQSVPLSCCR-------ETAKSCNGS-----LANPS-------DLYAEGCEALVVKKLQEILMHVIWAALAFAAIQLLGMLCACIVL 234
BLAST of Tetraspanin vs. UniProt/SwissProt
Match: sp|Q6AYR9|TSN1_RAT (Tetraspanin-1 OS=Rattus norvegicus OX=10116 GN=Tspan1 PE=2 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 8.080e-6 Identity = 63/250 (25.20%), Postives = 110/250 (44.00%), Query Frame = 3 Query: 156 MKRFLKIKIMII---------GSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFV--AXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSN 872 M+ F IK+M+I G+ L GIW+ V+ + K +F + SSSA+ FV LI G +F++ F GC+G+ ENKC+L + ++ + +A+I V V E L + ++K++ + FT+++ S M + CCG + TDF + + V +N+ P CC N + +P C + +N +GC + +L +++N Sbjct: 1 MQCFKFIKVMMILFNLLIFLCGAALLAVGIWVSVDGTSFLK------------AFGSLSSSAMQFVNVGYFLIAAGAVLFILGFLGCYGAHSENKCVLMMFFSILLIIFIAEIAGAVVALVYTTMAEQFLTFLVVPAIEKDYG-----YQTEFTQVWNSTMEGLHCCGFNNYTDFNSS------RFVKENKVFPPFCCANN---------------TDSHTVEP-CTEDKAKSMNVQGCFKQILQKIRTN 211
BLAST of Tetraspanin vs. TrEMBL
Match: A0A267EG05 (Tetraspanin OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig020731g1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.836e-15 Identity = 77/292 (26.37%), Postives = 155/292 (53.08%), Query Frame = 3 Query: 171 KIKIMIIGSVFLIFG-------IWIKVNKNNLFKILRSVTL------DDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXF---NGILSTNS---SLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSH---PIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCA-TSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK*QQN 977 K+ ++I+ VFL+ G IW+ V+ +++FK++ T ++T+ S+ +S+S L A +++ G F+I FCGC G+ +E+ C+L Y+ VS V++ +I G+ GV + + + +L+ + + N +S +S ++F+ + M CCG++ +D T + W N P+ CCK+N+ + + S N T +++++ D +C + +Q+N EGC + + + +A+I + I++ MFE++C++ AC +++K +QN Sbjct: 7 KLVLVIVNIVFLLAGAAIVGVSIWVIVSADSMFKLVHLATQGSDNINNETLMSY-KSSTSTLVAAAYVILVFGALSFLIGFCGCCGAIRESSCLLSIYAGAVSIVLIVEIAGGIAAGVFRAQIGTEMLPTLRRLEATRYLPINLAVSNDSNPNAVFSSLVNYAQVSMSCCGVSSMSDITGVNTLWTNSSRQYNGKTIVVPVTCCKMNK--KDELLSHQNWTRIDDYLIDRNCPYNASSSQINKEGCYDKLNSYIDRYTLAIIVVGILVGMFEIICVVMACSMVQKIRSERQN 295
BLAST of Tetraspanin vs. TrEMBL
Match: A0A267FTC4 (Tetraspanin OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig020731g3 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.284e-15 Identity = 78/292 (26.71%), Postives = 155/292 (53.08%), Query Frame = 3 Query: 171 KIKIMIIGSVFLIFG-------IWIKVNKNNLFKILRSVTL------DDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXF---NGILSTNS---SLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSH---PIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCA-TSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK*QQN 977 K+ ++I+ VFL+ G IW+ V+ +++FK++ T ++T+ S+ +S+S L A +++ G F+I FCGC G+ +E+ C+L Y+ VS V++ +I G+ GV + + + +LK + + N +S +S ++F+ + M CCG++ +D T + W N P+ CCK+N+ + + S N T +++++ D +C + +Q+N EGC + + + +A+I + I++ MFE++C++ AC +++K +QN Sbjct: 7 KLVLVIVNIVFLLAGAAIVGVSIWVIVSADSMFKLVHLATQGSDNINNETLMSY-KSSTSTLVAAAYVILVFGALSFLIGFCGCCGAIRESSCLLSIYAGAVSIVLIVEIAGGIAAGVFRAQIGTEMLPTLKRLEATRYLPINLAVSNDSNPNAVFSSLVNYAQVSMSCCGVSSMSDITGVNTLWTNSSRQYNGKTIVVPVTCCKMNK--KDELLSHQNWTRIDDYLIDRNCPYNASSSQINKEGCYDKLNSYIDRYTLAIIVVGILVGMFEIICVVMACSMVQKIRSERQN 295
BLAST of Tetraspanin vs. TrEMBL
Match: A0A267FNP2 (Tetraspanin OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030520g2 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.552e-15 Identity = 76/283 (26.86%), Postives = 150/283 (53.00%), Query Frame = 3 Query: 156 MKRFLKIKIMII----GSVFLIFGIWIKVNKNNLFKILRSVTLDDTV--ASFSN--TSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGI-LSTNSSLFTKIFTSMM----FQMKCCGITDETDFTDTDQNW---RQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRK 956 M +F+ + + II G V IW+ V+K+ +F +++ VT D V A+ N S+S L A +++ G V+ FCGC G+ KE+ C+L Y+ +S V++A+I + V + + + L+ L + ++ F + L+ N+ + T+ + +CCG+T++TD T D W ++ K Q+ P+ CC++ T + + K + V +++ DP+C + + TE C + + ++ + +I +CIV+ + E++C++ AC +++K Sbjct: 5 MNKFILVAVNIIFLLAGLVITGIAIWVIVSKDTMFDLVQLVTKDVDVDRATLDNYMNSTSMLLAAAYIVLVFGCISIVVGFCGCCGALKESSCLLMFYAIAISIVLIAEIVGAILAAVFRNQIGDKLQPRLVTLEREHFLPLGLTLNNKTTDAVITAWVNYAQTSFECCGVTNQTDITGPDTLWTRSHREFNGKLQTMPVTCCRMKAT-RSELLGKQDWNNVADYLEDPACPNTGNGVV-TESCYKKIDGMINKYSMPIIIVCIVVGLCEIICVVMACSLIQK 285
BLAST of Tetraspanin vs. TrEMBL
Match: A0A1I8H836 (Tetraspanin OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.872e-13 Identity = 51/204 (25.00%), Postives = 105/204 (51.47%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXF---NGILSTNS---SLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSH---PIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCA-TSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK*QQN 977 +E+ C+L Y+ VS V++ +I G+ GV + + + +L+ + + N +S +S ++F+ + M CCG++ +D T + W N P+ CCK+N+ + S N T +++++ D +C + +Q+N EGC + + + +A+I + I++ MFE++C++ AC +++K +QN Sbjct: 47 RESSCLLSIYAGAVSIVLIVEIAGGIAAGVFRAQIGTEMLPTLRRLEATRYLPINLAVSNDSNPNAVFSSLVNYAQVSMSCCGVSSMSDITGVNTLWTNSSRQYNGKTIVVPVTCCKMNKKDELL--SHQNWTRIDDYLIDRNCPYNASSSQINKEGCYDKLNSYIDRYTLAIIVVGILVGMFEIICVVMACSMVQKIRSERQN 248
BLAST of Tetraspanin vs. TrEMBL
Match: A0A1I8I7N5 (Tetraspanin OS=Macrostomum lignano OX=282301 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.958e-13 Identity = 52/204 (25.49%), Postives = 105/204 (51.47%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXF---NGILSTNS---SLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSH---PIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCA-TSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK*QQN 977 +E+ C+L Y+ VS V++ +I G+ GV + + + +LK + + N +S +S ++F+ + M CCG++ +D T + W N P+ CCK+N+ + S N T +++++ D +C + +Q+N EGC + + + +A+I + I++ MFE++C++ AC +++K +QN Sbjct: 47 RESSCLLSIYAGAVSIVLIVEIAGGIAAGVFRAQIGTEMLPTLKRLEATRYLPINLAVSNDSNPNAVFSSLVNYAQVSMSCCGVSSMSDITGVNTLWTNSSRQYNGKTIVVPVTCCKMNKKDELL--SHQNWTRIDDYLIDRNCPYNASSSQINKEGCYDKLNSYIDRYTLAIIVVGILVGMFEIICVVMACSMVQKIRSERQN 248
BLAST of Tetraspanin vs. Ensembl Cavefish
Match: tspan3a (tetraspanin 3 [Source:NCBI gene;Acc:103046031]) HSP 1 Score: 48.521 bits (114), Expect = 3.797e-6 Identity = 35/140 (25.00%), Postives = 65/140 (46.43%), Query Frame = 3 Query: 546 FNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK 965 +N TNS ++ + Q+ CCGIT+ D+ +T +W + +N S P+ CCK N +++ + + S+ L EGC +V+ +K ++ VI + ++L +L AC +L + G+ Sbjct: 125 YNEYNGTNSDAPSRAIDYVQRQLHCCGITNYLDWRNT--SWFNE--SRNNSVPLSCCKPN-------------------VSNCTGSLSRPGDLYPEGCEALVVKKLKEIMMYVIWAALTFAAIQMLGMLCACVVLCRRGR 241
BLAST of Tetraspanin vs. Ensembl Cavefish
Match: tspan3a (tetraspanin 3 [Source:NCBI gene;Acc:103046031]) HSP 1 Score: 48.1358 bits (113), Expect = 4.067e-6 Identity = 35/140 (25.00%), Postives = 65/140 (46.43%), Query Frame = 3 Query: 546 FNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK 965 +N TNS ++ + Q+ CCGIT+ D+ +T +W + +N S P+ CCK N +++ + + S+ L EGC +V+ +K ++ VI + ++L +L AC +L + G+ Sbjct: 99 YNEYNGTNSDAPSRAIDYVQRQLHCCGITNYLDWRNT--SWFNE--SRNNSVPLSCCKPN-------------------VSNCTGSLSRPGDLYPEGCEALVVKKLKEIMMYVIWAALTFAAIQMLGMLCACVVLCRRGR 215
BLAST of Tetraspanin vs. Ensembl Cavefish
Match: tspan3a (tetraspanin 3 [Source:NCBI gene;Acc:103046031]) HSP 1 Score: 48.1358 bits (113), Expect = 4.875e-6 Identity = 35/140 (25.00%), Postives = 65/140 (46.43%), Query Frame = 3 Query: 546 FNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKDGK 965 +N TNS ++ + Q+ CCGIT+ D+ +T +W + +N S P+ CCK N +++ + + S+ L EGC +V+ +K ++ VI + ++L +L AC +L + G+ Sbjct: 124 YNEYNGTNSDAPSRAIDYVQRQLHCCGITNYLDWRNT--SWFNE--SRNNSVPLSCCKPN-------------------VSNCTGSLSRPGDLYPEGCEALVVKKLKEIMMYVIWAALTFAAIQMLGMLCACVVLCRRGR 240
BLAST of Tetraspanin vs. Ensembl Sea Lamprey
Match: cd82b (CD82 molecule b [Source:ZFIN;Acc:ZDB-GENE-030131-2857]) HSP 1 Score: 48.521 bits (114), Expect = 6.511e-7 Identity = 44/180 (24.44%), Postives = 83/180 (46.11%), Query Frame = 3 Query: 396 KENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFT-KIFTSMMFQMKCCGITDETDFTDT----DQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEV 920 KE +C+L Y + +++AQ+ +G + K K N L I+K +N LST L T +++ S+ + CCG+ D+ D DQ I ++P C + + Q D N+ +F C +S + +GC + + +++N+ ++ +C+ + +FEV Sbjct: 59 KEVRCLLAVYFICLVGLLVAQVAIGTVVYINKEKINNKLNGVAFNIIKSYWN--LSTEDPLHTWRLWDSIQQKFNCCGLNGTEDWKDNVYICDQATYPDI-----TYPCSCFNNSSSVQKDHNNT-------QF-----CISSPTFAIAEQGCEMHIKDWLQANMSVILAVCVAIAVFEV 219
BLAST of Tetraspanin vs. Planmine SMEST
Match: SMESG000019443.1 (SMESG000019443.1) HSP 1 Score: 238.039 bits (606), Expect = 6.373e-77 Identity = 125/258 (48.45%), Postives = 190/258 (73.64%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRKD 959 +IG++ L GIW+K++K+NLF++LR++ L++T +SF NT+SS D +A+ LI+LG F+ FCGC G+ KE++C+L+ YS V+ VI+ QI +G+Y GV+K K + L+ SL +L+ EFNGI+S N S+FTK T++MF+MKCCGI +E DF T QNW+Q I +NQ HPIGCCK+ Q+F +D +KLN TI+ + + DP C ++ T+LN EGC+ V++ +++NL VI +C+ L +FE+LCI+FAC + R++ Sbjct: 21 LIGALILGIGIWVKIDKSNLFEMLRNIKLEETASSFDNTNSSLFDTIAIFLIVLGAITFITGFCGCCGAIKESQCLLFLYSLFVTVVIVGQIGVGIYAGVQKNKVQYYLESSLVSVLENEFNGIISPNPSMFTKALTAIMFEMKCCGIRNENDFKITKQNWKQTIQGQNQVHPIGCCKIKQSFSFDSENKLNYTILSDILVDPLCPVTKATKLNYEGCISVLIEKIRNNLTIVISVCVGLGLFEMLCIVFACCVARRN 278
BLAST of Tetraspanin vs. Planmine SMEST
Match: SMESG000078545.1 (SMESG000078545.1) HSP 1 Score: 216.083 bits (549), Expect = 2.419e-68 Identity = 129/260 (49.62%), Postives = 185/260 (71.15%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATS---QKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRK 956 I+G VFL GIW+KV+K+NLF+I+R V LD T +SF ++SSS L+ VA+ LI+LG F+I FCGC G+ KEN C+LY YSFLV VIL ++ +G+Y GVEKGKF+N + ++L ILK EFNGI+S N+++FTK+FT++M ++KCCGI D+ DF T NWRQ I +K Q++PIGCC + + Y+ N K L V+ F +P C T+ + +LN GC + +++L+ NL VI +C+ L +FE+ CI+FAC ++ K Sbjct: 21 ILGGVFLGVGIWVKVDKSNLFEIMRKVNLDGTASSFDSSSSSFLNIVAIVLIVLGTFTFIIGFCGCCGAIKENHCLLYLYSFLVGVVILIEVGIGIYAGVEKGKFKNGIDQALTKILKSEFNGIMSPNATIFTKVFTAVMLELKCCGIKDQEDFNSTKVNWRQIIDNKTQANPIGCCAEKEVYVYNTNDKFVLDKVKPFFKNPDCPTTTNRTQAKLNPTGCSQSLIDLINKNLGIVIGVCVGLGLFEIFCIIFACCVISK 280
BLAST of Tetraspanin vs. Planmine SMEST
Match: SMESG000019444.1 (SMESG000019444.1) HSP 1 Score: 207.608 bits (527), Expect = 3.494e-65 Identity = 122/245 (49.80%), Postives = 179/245 (73.06%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEV 920 IIG+V L GIW+KV+K+NLF+++R++ LD+T SFS+T+SS D VA+ LIILG F+ FCGC G+ KE+ C+L+ YSFLV+ VI+AQ+ +G+Y V++ KF+ L++SL I+ K+FNG LS+N S+FTK+FT++MF+MKCCG+ E DF W+Q I + Q HPIGCCKL +F ++ KLNLT+VE + DP+C ++T+LN +GC+ +++ +KS+L VI +CI L +FEV Sbjct: 21 IIGAVILGVGIWVKVDKSNLFEMMRNINLDETAKSFSSTNSSLFDIVAIILIILGAFTFITGFCGCCGAIKESSCLLFMYSFLVAAVIVAQVAVGIYASVQQNKFQARLEKSLIKIVAKDFNGALSSNPSMFTKVFTALMFEMKCCGVKGEADFNGIGDAWKQTISGRKQIHPIGCCKLKNSFHFNSKEKLNLTVVENTIEDPNCIFEKETKLNQKGCVVSLIDKIKSHLKIVIGVCIGLGLFEV 265
BLAST of Tetraspanin vs. Planmine SMEST
Match: SMESG000078589.1 (SMESG000078589.1) HSP 1 Score: 201.445 bits (511), Expect = 1.245e-62 Identity = 119/259 (45.95%), Postives = 175/259 (67.57%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCA--TSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEVLCILFACYILRK 956 IIG+ L GIW+KV+K+NLF+ILR + ++ + SF NT ++ LD +A+ LI+ G FV FCGC G+ KEN+ +L TYS LV+ ++A+I +G+Y GVE+ KF N L +SLK ++KK+FNG + N++ FTKIFT++MF ++CCGI DE+DF T+ NW K QSHP+GCCKLN +Y+ S L +++ + +C T+ +LN +GC+ ++ L+K NL VI ICI L +FE+ CI FAC + R+ Sbjct: 21 IIGAAILGVGIWVKVDKSNLFEILRKIKIEGSDVSFENTDNTVLDVIAIVLIVFGAFTFVTGFCGCCGAIKENRILLITYSILVAAAVIAEIGIGIYAGVEEKKFVNQLSDSLKNLIKKDFNGAFANNATQFTKIFTAIMFDLQCCGIVDESDFNVTNLNWTIS-SGKLQSHPVGCCKLNNNLKYNAQSNLKYEDIQDKLVTTNCPFETTVNVELNKDGCINALIKLLKENLGIVIGICIGLGLFEIFCIAFACIVARR 278
BLAST of Tetraspanin vs. Planmine SMEST
Match: SMESG000019444.1 (SMESG000019444.1) HSP 1 Score: 209.149 bits (531), Expect = 2.252e-62 Identity = 123/245 (50.20%), Postives = 179/245 (73.06%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEV 920 IIG+V L GIW+KV+K+NLF+++R++ LD+T SFS+T+SS D VA+ LIILG F+ FCGC G+ KE+ C+L+ YSFLV+ VI+AQ+ +G+Y V++ KF+ L++SL I+ K+FNG LS+N S+FTK+FT++MF+MKCCG+ E DF W+Q I + Q HPIGCCKL +F ++ KLNLT+VE M DP+C ++T+LN +GC+ +++ +KS+L VI +CI L +FEV Sbjct: 334 IIGAVILGVGIWVKVDKSNLFEMMRNINLDETAKSFSSTNSSLFDIVAIILIILGAFTFITGFCGCCGAIKESSCLLFMYSFLVAAVIVAQVAVGIYASVQQNKFQARLEKSLIKIVAKDFNGALSSNPSMFTKVFTALMFEMKCCGVKGEADFNGIGDAWKQTINGRKQIHPIGCCKLKNSFHFNSKEKLNLTVVENTMEDPNCIFEKETKLNQKGCVVSLIDKIKSHLKIVIGVCIGLGLFEV 578 HSP 2 Score: 207.994 bits (528), Expect = 6.292e-62 Identity = 122/245 (49.80%), Postives = 179/245 (73.06%), Query Frame = 3 Query: 186 IIGSVFLIFGIWIKVNKNNLFKILRSVTLDDTVASFSNTSSSALDFVAXXXXXXXXXXXXXXXXXXXXSCKENKCMLYTYSFLVSTVILAQICMGVYCGVEKGKFENXXXXXXXXXXXXXFNGILSTNSSLFTKIFTSMMFQMKCCGITDETDFTDTDQNWRQKIVDKNQSHPIGCCKLNQTFQYDPNSKLNLTIVEEFMADPSCATSQKTQLNTEGCLRVVLNLVKSNLVAVICICIVLCMFEV 920 IIG+V L GIW+KV+K+NLF+++R++ LD+T SFS+T+SS D VA+ LIILG F+ FCGC G+ KE+ C+L+ YSFLV+ VI+AQ+ +G+Y V++ KF+ L++SL I+ K+FNG LS+N S+FTK+FT++MF+MKCCG+ E DF W+Q I + Q HPIGCCKL +F ++ KLNLT+VE + DP+C ++T+LN +GC+ +++ +KS+L VI +CI L +FEV Sbjct: 21 IIGAVILGVGIWVKVDKSNLFEMMRNINLDETAKSFSSTNSSLFDIVAIILIILGAFTFITGFCGCCGAIKESSCLLFMYSFLVAAVIVAQVAVGIYASVQQNKFQARLEKSLIKIVAKDFNGALSSNPSMFTKVFTALMFEMKCCGVKGEADFNGIGDAWKQTISGRKQIHPIGCCKLKNSFHFNSKEKLNLTVVENTIEDPNCIFEKETKLNQKGCVVSLIDKIKSHLKIVIGVCIGLGLFEV 265 The following BLAST results are available for this feature:
BLAST of Tetraspanin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Tetraspanin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Tetraspanin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of Tetraspanin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Tetraspanin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of Tetraspanin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of Tetraspanin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of Tetraspanin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Tetraspanin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Tetraspanin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Tetraspanin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Tetraspanin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Tetraspanin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Tetraspanin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011329 ID=SMED30011329|Name=Tetraspanin|organism=Schmidtea mediterranea sexual|type=transcript|length=1044bpback to top protein sequence of SMED30011329-orf-1 >SMED30011329-orf-1 ID=SMED30011329-orf-1|Name=SMED30011329-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=287bp MIGCRAHTFKLILRIGMKRFLKIKIMIIGSVFLIFGIWIKVNKNNLFKILback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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