DNA polymerase subunit gamma-1

Overview


Name	DNA polymerase subunit gamma-1
Smed ID	SMED30011285
Length (bp)	2880

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of DNA polymerase subunit gamma-1 (SMED30011285) t-SNE clustered cells

Violin plots show distribution of expression levels for DNA polymerase subunit gamma-1 (SMED30011285) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DNA polymerase subunit gamma-1 (SMED30011285) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DNA polymerase subunit gamma-1 (SMED30011285) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30011285

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 18

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
intestinal phagocyte	SMED30011285	SMESG000050769.1	Contig370	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000050769.1	Contig370	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000050769.1	Contig372	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000050769.1	Contig372	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000050769.1	Contig375	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000050769.1	Contig375	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000018708.1	Contig375	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000018708.1	Contig375	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000078787.1	Contig372	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000078787.1	Contig372	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000016283.1	Contig370	newmark_ests	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30011285	SMESG000016283.1	Contig370	uc_Smed_v2	PMID:23079596 Forsthoefel et al., 2012
pharynx	SMED30011285	SMESG000077612.1 SMESG000050769.1	dd_Smed_v4_5734_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30011285	SMESG000077612.1 SMESG000050769.1	dd_Smed_v4_5734_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30011285	SMESG000077612.1 SMESG000050769.1	dd_Smed_v4_5734_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30011285	SMESG000077612.1 SMESG000050769.1	dd_Smed_v4_5734_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30011285	SMESG000077612.1 SMESG000050769.1	dd_Smed_v4_5734_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30011285	SMESG000077612.1 SMESG000050769.1	dd_Smed_v4_5734_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
Match: POLG (DNA polymerase gamma, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9179])

HSP 1 Score: 220.705 bits (561), Expect = 6.459e-59
Identity = 125/375 (33.33%), Postives = 190/375 (50.67%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELI--ELFDNKDRNIFR-----CVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLR------------------QRYKTSEKFK---------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L   Y   +++H         LA +   PY    N L     +PP P  + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI  E+         R      V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R                  Q  K+  K +         W  ++S N L +V+ LY     PP  K+ R +FV G+  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++   AN    L   + YK+DPWLWDL+W
Sbjct:  127 LPPLYGDNLDQH------FRLLAQKQSLPYLEAANLLLQA-QLPPKPPAWAWAEGWTRYGPEGEAVP-VAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGG--PPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLM-DLANDACQLLSGERYKEDPWLWDLEW 490

HSP 2 Score: 55.0694 bits (131), Expect = 6.906e-7
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L P+  D A +  PSLL+  M +  KL+ L WDG PL+Y +++ WG L P +
Sbjct:  570 PGWYRKLCPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGR 627

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
Match: POLG (DNA polymerase gamma, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9179])

HSP 1 Score: 220.32 bits (560), Expect = 1.234e-58
Identity = 122/359 (33.98%), Postives = 185/359 (51.53%), Query Frame = 3

Query:  267 ERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELI--ELFDNKDRNIFR-----CVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLR------------------QRYKTSEKFK---------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            +    LA +   PY    N L     +PP P  + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI  E+         R      V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R                  Q  K+  K +         W  ++S N L +V+ LY     PP  K+ R +FV G+  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++   AN    L   + YK+DPWLWDL+W
Sbjct:    4 QHFRLLAQKQSLPYLEAANLLLQA-QLPPKPPAWAWAEGWTRYGPEGEAVP-VAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGG--PPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLM-DLANDACQLLSGERYKEDPWLWDLEW 357

HSP 2 Score: 55.0694 bits (131), Expect = 6.357e-7
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L P+  D A +  PSLL+  M +  KL+ L WDG PL+Y +++ WG L P +
Sbjct:  437 PGWYRKLCPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGR 494

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
Match: POLG (DNA polymerase gamma, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9179])

HSP 1 Score: 220.705 bits (561), Expect = 1.814e-58
Identity = 125/375 (33.33%), Postives = 190/375 (50.67%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELI--ELFDNKDRNIFR-----CVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLR------------------QRYKTSEKFK---------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L   Y   +++H         LA +   PY    N L     +PP P  + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI  E+         R      V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R                  Q  K+  K +         W  ++S N L +V+ LY     PP  K+ R +FV G+  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++   AN    L   + YK+DPWLWDL+W
Sbjct:  127 LPPLYGDNLDQH------FRLLAQKQSLPYLEAANLLLQA-QLPPKPPAWAWAEGWTRYGPEGEAVP-VAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGG--PPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLM-DLANDACQLLSGERYKEDPWLWDLEW 490

HSP 2 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 52/168 (30.95%), Postives = 79/168 (47.02%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S+ FN + +   S   +TP L    S+ L  S  +E      +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L  E DRY+ A AL   +  T+  FA  L L ++P    F  +VDID C R     D  + +   G+   YGI  G +L
Sbjct: 1051 GGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEAL 1218

HSP 3 Score: 55.0694 bits (131), Expect = 7.471e-7
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L P+  D A +  PSLL+  M +  KL+ L WDG PL+Y +++ WG L P +
Sbjct:  570 PGWYRKLCPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGR 627

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
Match: POLG (DNA polymerase gamma, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9179])

HSP 1 Score: 220.705 bits (561), Expect = 1.814e-58
Identity = 125/375 (33.33%), Postives = 190/375 (50.67%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELI--ELFDNKDRNIFR-----CVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLR------------------QRYKTSEKFK---------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L   Y   +++H         LA +   PY    N L     +PP P  + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI  E+         R      V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R                  Q  K+  K +         W  ++S N L +V+ LY     PP  K+ R +FV G+  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++   AN    L   + YK+DPWLWDL+W
Sbjct:  127 LPPLYGDNLDQH------FRLLAQKQSLPYLEAANLLLQA-QLPPKPPAWAWAEGWTRYGPEGEAVP-VAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGG--PPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLM-DLANDACQLLSGERYKEDPWLWDLEW 490

HSP 2 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 52/168 (30.95%), Postives = 79/168 (47.02%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S+ FN + +   S   +TP L    S+ L  S  +E      +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L  E DRY+ A AL   +  T+  FA  L L ++P    F  +VDID C R     D  + +   G+   YGI  G +L
Sbjct: 1051 GGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEAL 1218

HSP 3 Score: 55.0694 bits (131), Expect = 7.471e-7
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L P+  D A +  PSLL+  M +  KL+ L WDG PL+Y +++ WG L P +
Sbjct:  570 PGWYRKLCPRLDDPAWTPGPSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGR 627

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
Match: POLG (DNA polymerase gamma, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9179])

HSP 1 Score: 198.749 bits (504), Expect = 1.938e-54
Identity = 113/351 (32.19%), Postives = 175/351 (49.86%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELI--ELFDNKDRNIFR-----CVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLR------------------QRYKTSEKFK---------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKA 1169
            L   Y   +++H         LA +   PY    N L     +PP P  + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI  E+         R      V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R                  Q  K+  K +         W  ++S N L +V+ LY     PP  K+ R +FV G+  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++  A
Sbjct:  127 LPPLYGDNLDQH------FRLLAQKQSLPYLEAANLLLQA-QLPPKPPAWAWAEGWTRYGPEGEAV-PVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGG--PPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLA 467

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Celegans
Match: polg-1 (POLG (Mitochondrial DNA POLymerase Gamma) [Source:UniProtKB/TrEMBL;Acc:Q9U208])

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-41
Identity = 106/314 (33.76%), Postives = 164/314 (52.23%), Query Frame = 3

Query:  372 YCEGWTKYD-KKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVN-QSSNTRFVDTMSMHIAISGMT---ASLRQRY--KTSEKFK-----WKTVTSGNGLLDVYSLYFPNK----EPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIE---QSNKDFYTIGS----NHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT 1244
            Y  GWT+Y    +     + FP + ++ FDIE++V +G  P++A+ LG+D+WY W S+RLI  +    +I    +LI +    +  + + +IGH V +DRAR    Y +   S  RF+DTMSM I + GM     SL + Y  +T++        WK   S N L+ V+   +P+K    E    K  R  FV      +  +FQ LM YCA D ++ AEI+ +L+P F KRFPH + L GML + ++YLP N+ W  F E   Q+ +   T  +       +++ K+  + G  +G + N   D W+W   WT
Sbjct:  113 YKTGWTRYPFSTSEPPETIDFPRDSILFFDIELVVRDGTLPTLAIALGRDAWYGWCSDRLIYESEIP-EIPTKADLIPI---GEIGMEKVIIGHNVGFDRARCREAYQSINGSKIRFMDTMSMSIPMYGMADHQQSLYEMYDVETNDSHSDWMNAWKGRVSKNSLVAVHDHLYPDKAINAEGFSKKTMRASFVKDPIEQIREDFQPLMSYCARDNILCAEIYFRLWPEFIKRFPHPATLSGMLNMGNVYLPINSYWKMFYEKNVQTCEQKKTAATRKIIESARLVAKRLDDEGEEIGPEKN---DVWMWHHDWT 419

HSP 2 Score: 54.6842 bits (130), Expect = 3.997e-7
Identity = 36/148 (24.32%), Postives = 66/148 (44.59%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPL--IISGN-----------RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWR 2641
             G  S  FN +     + DL+TP L  + +  L  +  G            R +M   ++SS  D++  L+V  + L    K+++R  I   +E+R++C E D  ++A AL  ++   +   +  + +  +P+   F   VD D   R
Sbjct:  890 GGYESSTFNFLETSAAAHDLRTPILGCQIADSLGKLPEGTPDSAYFDRKYKRSVMNWIVQSSAVDFLHLLLVSMQWLCDTYKIDARFVISIHDEVRYMCKEPDAPRLALALQLSNLLVRAYISQRVGICQLPNTVAFFSQVDCDTVLR 1037

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Fly
Match: tam (gene:FBgn0004406 transcript:FBtr0080571)

HSP 1 Score: 249.595 bits (636), Expect = 1.965e-68
Identity = 180/593 (30.35%), Postives = 267/593 (45.03%), Query Frame = 3

Query:  249 RHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIK-------------SNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKT-----SEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT------------KPLPR-----------------------------------------WYKDLIPKDSANSC--------EP-----SLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKP-------------------CKMP--------KSDIDIII-----TVPKNFPKREYFKDHDQSHD-LET--------------NTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSN 1634
            R  N  E  + +A E  +PYE LL  L     +P  P+++ +  GWT YD +  + + V  P EK ++FD+EV V+EG  P +A  +    WYSWVS++L K               ++ R    +DELI L           V+GH VSYDRAR+  +Y+ + + TRFVDTMS+H+ +SG+T+  R   K+     +E   W   +S N L++V+ LY        +K+ RNIFV G+   V  +FQ+L  YCA+DV  T  I + L+P++ +RFPH + L GMLE+ S YLP N+ W ++I ++   +  + S   K  L + A     L  DD Y+++ WLWD  W+            KPLP                                          WY+ L  K  A           EP     S +++ M IA KLL L W+G PL+Y+++  WG L P                   C +P        K++ D+        V ++  KRE++K   Q    LET              +   F  + HK+G    V   LS D ++  A N L+S 
Sbjct:  116 RGANIEEHFHNIAKEQVQPYEELLLPLVQCEQLPKRPKRWAFHTGWTAYDPEDGTATPVDHPLEKGLVFDVEVCVSEGQAPVLATAVSTKRWYSWVSSKLTKHRLSVEKLEPLDVDTDSERPHYTTDELIPLGTTGPG----LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDT--LSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDL-SIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRPLLPGYPLWYRKLCRKPPAKRADEILEDDEEPWSPGASEISTGMQIAPKLLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVDRLPMEQLLAHCPVPEFARLSASKAESDMAFDMLPGQVEQHLGKREHYKKLSQKQQRLETQYQGSGVWCNKVLDDCCFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSSG 701

HSP 2 Score: 60.077 bits (144), Expect = 1.065e-8
Identity = 46/171 (26.90%), Postives = 73/171 (42.69%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRELMQCFL--------KSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMN-PMNDFCSETGRGIYYNYGIKPGFSL 2722
             G  S  FN +         +TPFL  + S+ L      E  Q FL        +S   D++  ++V  + L   M  + R  +   +E+R+L  E    K A A+H  +  T+    S + L+++P    F  SV++D   R    M+        G+   YGI+PG SL
Sbjct:  955 GGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWL---MGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSVAFFSSVEVDTVLRKECTMDCKTPSNPHGLRIGYGIQPGQSL 1122

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Zebrafish
Match: polg (polymerase (DNA directed), gamma [Source:ZFIN;Acc:ZDB-GENE-060303-1])

HSP 1 Score: 232.261 bits (591), Expect = 1.584e-62
Identity = 132/375 (35.20%), Postives = 200/375 (53.33%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDEL-IELFDNKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSE---------------------------KFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + Y + I+ H         LA +   PY +   S   K  IP MP+++ +  GWT+Y     S  KV FPDE  ++FD+EV + EG+ P++AV L   +WYSW S+RL++     + D+  +D + +E   N  +        R V+GH VS+DRA +  +Y+ + S  RF+DTMS+H+AISG+T   R  +  S+                            ++W  ++S N L DV++LY      P  K+ R +FV GS +D+  NFQ LM+YCA DVL T E+F +  P+F +R PH   L GMLE+   YLP N+ W +++E +   +  +    +K ++  A +   +L +DD YK DPWLWDL W
Sbjct:   96 LPEMYGSNIDEH------FRLLAQKQSLPY-LEAASQLQKAQIPEMPQEWAWEVGWTRYGADGES-QKVNFPDENALVFDVEVCMAEGHCPTLAVALSPTAWYSWCSHRLVEDRYAWSSDLSLADLIPLETLANSSQPRGGEWKERLVVGHNVSFDRAHIKEQYLLKGSKMRFLDTMSLHMAISGLTGFQRSLWMASKYGKRKGLQEVKEHMKRLGRRPEGPKIGSWEWVNISSINNLADVHALYVGGD--PLMKESRELFVKGSMSDIRGNFQELMQYCALDVLATQEVFTQQLPLFMERCPHPVTLAGMLEMGVCYLPVNHNWRRYLEDAQATYEELQREMKKSLMILADDACQLL-QDDRYKDDPWLWDLDW 459

HSP 2 Score: 72.4034 bits (176), Expect = 2.186e-12
Identity = 48/168 (28.57%), Postives = 81/168 (48.21%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMN-PMNDFCSETGRGIYYNYGIKPGFSL 2722
            +G  S  FN + +  +S    TP L+ + S+ L  S  +E      +   ++SS  DY+  ++V  + L  E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L + ++P    F  +VDID+C R    M+     +  G+   YG+  G +L
Sbjct: 1015 DGTESYMFNKLESIAQSDRPATPVLNCRISRALEPSAVQEEFITSRVNWVVQSSAVDYLHLMLVSMRWLFEEHDIDGRFCISIHDEVRYLVTSEDRYRAALALQITNLLTRCMFAFKLGMMDLPQSVAFFSAVDIDKCLRKEVTMDCKTPSSPAGVERRYGLPQGEAL 1182

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
Match: tpst1 (tyrosylprotein sulfotransferase 1 [Source:Xenbase;Acc:XB-GENE-953306])

HSP 1 Score: 238.81 bits (608), Expect = 1.701e-64
Identity = 136/365 (37.26%), Postives = 199/365 (54.52%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDELIELFDNKDRNIF-------RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK----------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L K Y  +I  H         LA +   PY    N L +   +P MP+ + +  GWT+Y     +   V FPDEK ++FD+EV V+EG+ P++A  +    WYSW S RLI+   T ++++  SD LI L  + + N         R V+GH +S+DRA +  +Y+ + S  RF+DTMSMH+AISG+T   R  +  S+  K                W  ++S N L DV++LY     PP  K+ R +FV GS +D+   FQ LM+YCA DV  T EIFQ+ FP+F +R PH   L GMLE+   YLP N  W ++++++   +  +    +K ++   AN    L  +D YK+DPWLWDL+W
Sbjct:  101 LPKLYGNDIEEH------FQILAQKQSLPYLEAANDLMN-CQLPTMPQTWAWQSGWTRYTATGET-ELVDFPDEKALVFDVEVCVSEGHCPTLAAAVSPQYWYSWCSRRLIEDRYTWSKELSLSD-LIPLETSVNCNCITKNNWTERLVVGHNISFDRAHIKEQYLIKGSKMRFMDTMSMHMAISGLTGFQRTLWMASKYGKKKGQDFVRLFQISSWDWVNISSINNLADVHALYVGG--PPLEKEARELFVKGSISDIRTEFQELMRYCALDVQATHEIFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLM-NLANDACQLLTEDAYKEDPWLWDLEW 453

HSP 2 Score: 77.0258 bits (188), Expect = 1.137e-13
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSK---PLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S  FN +     S   KTP L    S+   P  + G      +   ++SS  DY+  ++V  K L     ++ R  I   +E+R+L    DRY+ A AL   +  T+  FAS L ++++P    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct:  987 GGTESQMFNKLETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVQSKDRYRAALALQITNLLTRCMFASRLGMQDLPQSVAFFSAVDIDKCLRKEVTMDCATPSNPTGMEKRYGIPQGEAL 1154

HSP 3 Score: 55.0694 bits (131), Expect = 6.407e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L PK  D      PSL++  M +  KL+RL WDG PL+Y +K+ WG L P K
Sbjct:  519 PGWYRKLCPKLEDPDWLPGPSLISLQMRLTPKLMRLTWDGFPLHYSEKHGWGYLVPGK 576

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
Match: tpst1 (tyrosylprotein sulfotransferase 1 [Source:Xenbase;Acc:XB-GENE-953306])

HSP 1 Score: 236.113 bits (601), Expect = 1.326e-63
Identity = 138/376 (36.70%), Postives = 200/376 (53.19%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDELIELFDNKDRNIF-------RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEKFK--------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L K Y  +I  H         LA +   PY    N L +   +P MP+ + +  GWT+Y     +   V FPDEK ++FD+EV V+EG+ P++A  +    WYSW S RLI+   T ++++  SD LI L  + + N         R V+GH +S+DRA +  +Y+ + S  RF+DTMSMH+AISG+T   R  +                   KT  KF         W  ++S N L DV++LY     PP  K+ R +FV GS +D+   FQ LM+YCA DV  T EIFQ+ FP+F +R PH   L GMLE+   YLP N  W ++++++   +  +    +K ++   AN    L  +D YK+DPWLWDL+W
Sbjct:  101 LPKLYGNDIEEH------FQILAQKQSLPYLEAANDLMN-CQLPTMPQTWAWQSGWTRYTATGET-ELVDFPDEKALVFDVEVCVSEGHCPTLAAAVSPQYWYSWCSRRLIEDRYTWSKELSLSD-LIPLETSVNCNCITKNNWTERLVVGHNISFDRAHIKEQYLIKGSKMRFMDTMSMHMAISGLTGFQRTLWMASKYGKKKGLQEVKQHIKKTRSKFDGSPISSWDWVNISSINNLADVHALYVGG--PPLEKEARELFVKGSISDIRTEFQELMRYCALDVQATHEIFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLM-NLANDACQLLTEDAYKEDPWLWDLEW 464

HSP 2 Score: 77.0258 bits (188), Expect = 1.250e-13
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSK---PLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S  FN +     S   KTP L    S+   P  + G      +   ++SS  DY+  ++V  K L     ++ R  I   +E+R+L    DRY+ A AL   +  T+  FAS L ++++P    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct: 1017 GGTESQMFNKLETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVQSKDRYRAALALQITNLLTRCMFASRLGMQDLPQSVAFFSAVDIDKCLRKEVTMDCATPSNPTGMEKRYGIPQGEAL 1184

HSP 3 Score: 55.0694 bits (131), Expect = 6.609e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L PK  D      PSL++  M +  KL+RL WDG PL+Y +K+ WG L P K
Sbjct:  542 PGWYRKLCPKLEDPDWLPGPSLISLQMRLTPKLMRLTWDGFPLHYSEKHGWGYLVPGK 599

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
Match: tpst1 (tyrosylprotein sulfotransferase 1 [Source:Xenbase;Acc:XB-GENE-953306])

HSP 1 Score: 235.728 bits (600), Expect = 1.519e-63
Identity = 138/376 (36.70%), Postives = 200/376 (53.19%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDELIELFDNKDRNIF-------RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEKFK--------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L K Y  +I  H         LA +   PY    N L +   +P MP+ + +  GWT+Y     +   V FPDEK ++FD+EV V+EG+ P++A  +    WYSW S RLI+   T ++++  SD LI L  + + N         R V+GH +S+DRA +  +Y+ + S  RF+DTMSMH+AISG+T   R  +                   KT  KF         W  ++S N L DV++LY     PP  K+ R +FV GS +D+   FQ LM+YCA DV  T EIFQ+ FP+F +R PH   L GMLE+   YLP N  W ++++++   +  +    +K ++   AN    L  +D YK+DPWLWDL+W
Sbjct:   94 LPKLYGNDIEEH------FQILAQKQSLPYLEAANDLMN-CQLPTMPQTWAWQSGWTRYTATGET-ELVDFPDEKALVFDVEVCVSEGHCPTLAAAVSPQYWYSWCSRRLIEDRYTWSKELSLSD-LIPLETSVNCNCITKNNWTERLVVGHNISFDRAHIKEQYLIKGSKMRFMDTMSMHMAISGLTGFQRTLWMASKYGKKKGLQEVKQHIKKTRSKFDGSPISSWDWVNISSINNLADVHALYVGG--PPLEKEARELFVKGSISDIRTEFQELMRYCALDVQATHEIFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLM-NLANDACQLLTEDAYKEDPWLWDLEW 457

HSP 2 Score: 77.0258 bits (188), Expect = 1.171e-13
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSK---PLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S  FN +     S   KTP L    S+   P  + G      +   ++SS  DY+  ++V  K L     ++ R  I   +E+R+L    DRY+ A AL   +  T+  FAS L ++++P    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct:  973 GGTESQMFNKLETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVQSKDRYRAALALQITNLLTRCMFASRLGMQDLPQSVAFFSAVDIDKCLRKEVTMDCATPSNPTGMEKRYGIPQGEAL 1140

HSP 3 Score: 55.0694 bits (131), Expect = 6.723e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L PK  D      PSL++  M +  KL+RL WDG PL+Y +K+ WG L P K
Sbjct:  523 PGWYRKLCPKLEDPDWLPGPSLISLQMRLTPKLMRLTWDGFPLHYSEKHGWGYLVPGK 580

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
Match: tpst1 (tyrosylprotein sulfotransferase 1 [Source:Xenbase;Acc:XB-GENE-953306])

HSP 1 Score: 235.728 bits (600), Expect = 1.604e-63
Identity = 138/376 (36.70%), Postives = 200/376 (53.19%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDELIELFDNKDRNIF-------RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEKFK--------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L K Y  +I  H         LA +   PY    N L +   +P MP+ + +  GWT+Y     +   V FPDEK ++FD+EV V+EG+ P++A  +    WYSW S RLI+   T ++++  SD LI L  + + N         R V+GH +S+DRA +  +Y+ + S  RF+DTMSMH+AISG+T   R  +                   KT  KF         W  ++S N L DV++LY     PP  K+ R +FV GS +D+   FQ LM+YCA DV  T EIFQ+ FP+F +R PH   L GMLE+   YLP N  W ++++++   +  +    +K ++   AN    L  +D YK+DPWLWDL+W
Sbjct:  101 LPKLYGNDIEEH------FQILAQKQSLPYLEAANDLMN-CQLPTMPQTWAWQSGWTRYTATGET-ELVDFPDEKALVFDVEVCVSEGHCPTLAAAVSPQYWYSWCSRRLIEDRYTWSKELSLSD-LIPLETSVNCNCITKNNWTERLVVGHNISFDRAHIKEQYLIKGSKMRFMDTMSMHMAISGLTGFQRTLWMASKYGKKKGLQEVKQHIKKTRSKFDGSPISSWDWVNISSINNLADVHALYVGG--PPLEKEARELFVKGSISDIRTEFQELMRYCALDVQATHEIFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLM-NLANDACQLLTEDAYKEDPWLWDLEW 464

HSP 2 Score: 77.0258 bits (188), Expect = 1.285e-13
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSK---PLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S  FN +     S   KTP L    S+   P  + G      +   ++SS  DY+  ++V  K L     ++ R  I   +E+R+L    DRY+ A AL   +  T+  FAS L ++++P    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct:  996 GGTESQMFNKLETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVQSKDRYRAALALQITNLLTRCMFASRLGMQDLPQSVAFFSAVDIDKCLRKEVTMDCATPSNPTGMEKRYGIPQGEAL 1163

HSP 3 Score: 55.0694 bits (131), Expect = 7.045e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L PK  D      PSL++  M +  KL+RL WDG PL+Y +K+ WG L P K
Sbjct:  530 PGWYRKLCPKLEDPDWLPGPSLISLQMRLTPKLMRLTWDGFPLHYSEKHGWGYLVPGK 587

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
Match: tpst1 (tyrosylprotein sulfotransferase 1 [Source:Xenbase;Acc:XB-GENE-953306])

HSP 1 Score: 235.343 bits (599), Expect = 1.894e-63
Identity = 138/376 (36.70%), Postives = 200/376 (53.19%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDELIELFDNKDRNIF-------RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEKFK--------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L K Y  +I  H         LA +   PY    N L +   +P MP+ + +  GWT+Y     +   V FPDEK ++FD+EV V+EG+ P++A  +    WYSW S RLI+   T ++++  SD LI L  + + N         R V+GH +S+DRA +  +Y+ + S  RF+DTMSMH+AISG+T   R  +                   KT  KF         W  ++S N L DV++LY     PP  K+ R +FV GS +D+   FQ LM+YCA DV  T EIFQ+ FP+F +R PH   L GMLE+   YLP N  W ++++++   +  +    +K ++   AN    L  +D YK+DPWLWDL+W
Sbjct:   74 LPKLYGNDIEEH------FQILAQKQSLPYLEAANDLMN-CQLPTMPQTWAWQSGWTRYTATGET-ELVDFPDEKALVFDVEVCVSEGHCPTLAAAVSPQYWYSWCSRRLIEDRYTWSKELSLSD-LIPLETSVNCNCITKNNWTERLVVGHNISFDRAHIKEQYLIKGSKMRFMDTMSMHMAISGLTGFQRTLWMASKYGKKKGLQEVKQHIKKTRSKFDGSPISSWDWVNISSINNLADVHALYVGG--PPLEKEARELFVKGSISDIRTEFQELMRYCALDVQATHEIFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLM-NLANDACQLLTEDAYKEDPWLWDLEW 437

HSP 2 Score: 77.411 bits (189), Expect = 9.875e-14
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSK---PLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S  FN +     S   KTP L    S+   P  + G      +   ++SS  DY+  ++V  K L     ++ R  I   +E+R+L    DRY+ A AL   +  T+  FAS L ++++P    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct:  971 GGTESQMFNKLETIAMSPSPKTPVLGCHISRALEPAAVKGEFITSRINWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVQSKDRYRAALALQITNLLTRCMFASRLGMQDLPQSVAFFSAVDIDKCLRKEVTMDCATPSNPTGMEKRYGIPQGEAL 1138

HSP 3 Score: 55.0694 bits (131), Expect = 6.777e-7
Identity = 27/58 (46.55%), Postives = 35/58 (60.34%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L PK  D      PSL++  M +  KL+RL WDG PL+Y +K+ WG L P K
Sbjct:  500 PGWYRKLCPKLEDPDWLPGPSLISLQMRLTPKLMRLTWDGFPLHYSEKHGWGYLVPGK 557

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
Match: Polg (polymerase (DNA directed), gamma [Source:MGI Symbol;Acc:MGI:1196389])

HSP 1 Score: 228.024 bits (580), Expect = 7.803e-65
Identity = 126/374 (33.69%), Postives = 195/374 (52.14%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDN-------KDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQ--------RYKTSEKFK------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + +   +++H         LA +   PY     SL     +PP P+ + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI L  +       K     + V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R         ++KT +  K                  W  ++S N L DV++LY     PP  K+ R +FV GS  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++   AN    L   + YK+DPWLWDL+W
Sbjct:  110 LPRLFGGNLDQH------FRLLAQKQSLPYLEAAASLLEA-QLPPEPKSWAWAEGWTRYGPEGEA-EPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSRRLVEERYSWTSQLSPADLIPLGGSTSASSSTKQDGQEQLVVGHNVSFDRAHIREQYLIQDSRMRFLDTMSMHMAISGLSSFQRSLWMGAKQGKHKTQQSTKRGQKSPRKANGPAISSWDWMDISSANNLADVHNLYVGG--PPLEKEPRELFVKGSMRDIRENFQDLMQYCARDVWATFEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLTEAQNTYEELQREMKKSLM-DLANDACQLLSGERYKEDPWLWDLEW 472

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
Match: Polg (polymerase (DNA directed), gamma [Source:MGI Symbol;Acc:MGI:1196389])

HSP 1 Score: 227.639 bits (579), Expect = 5.778e-61
Identity = 126/374 (33.69%), Postives = 195/374 (52.14%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDN-------KDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQ--------RYKTSEKFK------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + +   +++H         LA +   PY     SL     +PP P+ + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +WYSW S RL++   +    +   +LI L  +       K     + V+GH VS+DRA +  +Y+ Q S  RF+DTMSMH+AISG+++  R         ++KT +  K                  W  ++S N L DV++LY     PP  K+ R +FV GS  D+  NFQ LM+YCA DV  T E+FQ+  P+F +R PH   L GMLE+   YLP N  W +++ ++   +  +    +K ++   AN    L   + YK+DPWLWDL+W
Sbjct:  110 LPRLFGGNLDQH------FRLLAQKQSLPYLEAAASLLEA-QLPPEPKSWAWAEGWTRYGPEGEA-EPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSRRLVEERYSWTSQLSPADLIPLGGSTSASSSTKQDGQEQLVVGHNVSFDRAHIREQYLIQDSRMRFLDTMSMHMAISGLSSFQRSLWMGAKQGKHKTQQSTKRGQKSPRKANGPAISSWDWMDISSANNLADVHNLYVGG--PPLEKEPRELFVKGSMRDIRENFQDLMQYCARDVWATFEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLTEAQNTYEELQREMKKSLM-DLANDACQLLSGERYKEDPWLWDLEW 472

HSP 2 Score: 78.5666 bits (192), Expect = 2.872e-14
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLS---SKFSKPLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S+ FN + +   S   +TP L    S+  +P ++ G      +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L  E DRY+ A AL   +  T+  FA  L L ++P    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct: 1029 GGTESEMFNKLESIAMSDTPRTPVLGCCISRALEPSVVQGEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDQCLRKEVTMDCKTPSNPTGMERRYGIPQGEAL 1196

HSP 3 Score: 53.5286 bits (127), Expect = 1.592e-6
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L P+  D A +  PSLL+  M +  KL+ L WDG PL+Y   + WG L P +
Sbjct:  551 PGWYRKLCPRLDDPAWAPGPSLLSLQMRVTPKLMALTWDGFPLHYSDSHGWGYLVPGR 608

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
Match: Polg (polymerase (DNA directed), gamma [Source:MGI Symbol;Acc:MGI:1196389])

HSP 1 Score: 55.4546 bits (132), Expect = 4.305e-9
Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 2

Query: 2474 NEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSLHF 2728
            +E+R+L  E DRY+ A AL   +  T+  FA  L L ++P    F  +VDID+C R     D  + +   G+   YGI  G  L  
Sbjct:    6 DEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQSVAFFSAVDIDQCLRKEVTMDCKTPSNPTGMERRYGIPQGCDLEL 91

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
Match: Polg (polymerase (DNA directed), gamma [Source:MGI Symbol;Acc:MGI:1196389])

HSP 1 Score: 59.3066 bits (142), Expect = 5.541e-9
Identity = 29/102 (28.43%), Postives = 52/102 (50.98%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSW 524
            L + +   +++H         LA +   PY     SL     +PP P+ + + EGWT+Y  +  +   V  P+E+ ++FD+EV + EG  P++AV +   +W
Sbjct:  110 LPRLFGGNLDQH------FRLLAQKQSLPYLEAAASLLEA-QLPPEPKSWAWAEGWTRYGPEGEA-EPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAW 203

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
Match: Polg (polymerase (DNA directed), gamma [Source:MGI Symbol;Acc:MGI:1196389])

HSP 1 Score: 52.7582 bits (125), Expect = 6.641e-7
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 3

Query: 1254 PRWYKDLIPK--DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            P WY+ L P+  D A +  PSLL+  M +  KL+ L WDG PL+Y   + WG L P +
Sbjct:   44 PGWYRKLCPRLDDPAWAPGPSLLSLQMRVTPKLMALTWDGFPLHYSDSHGWGYLVPGR 101

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
Match: sp|Q27607|DPOG1_DROME (DNA polymerase subunit gamma-1, mitochondrial OS=Drosophila melanogaster OX=7227 GN=tam PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.970e-67
Identity = 180/593 (30.35%), Postives = 267/593 (45.03%), Query Frame = 3

Query:  249 RHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIK-------------SNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKT-----SEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT------------KPLPR-----------------------------------------WYKDLIPKDSANSC--------EP-----SLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKP-------------------CKMP--------KSDIDIII-----TVPKNFPKREYFKDHDQSHD-LET--------------NTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSN 1634
            R  N  E  + +A E  +PYE LL  L     +P  P+++ +  GWT YD +  + + V  P EK ++FD+EV V+EG  P +A  +    WYSWVS++L K               ++ R    +DELI L           V+GH VSYDRAR+  +Y+ + + TRFVDTMS+H+ +SG+T+  R   K+     +E   W   +S N L++V+ LY        +K+ RNIFV G+   V  +FQ+L  YCA+DV  T  I + L+P++ +RFPH + L GMLE+ S YLP N+ W ++I ++   +  + S   K  L + A     L  DD Y+++ WLWD  W+            KPLP                                          WY+ L  K  A           EP     S +++ M IA KLL L W+G PL+Y+++  WG L P                   C +P        K++ D+        V ++  KRE++K   Q    LET              +   F  + HK+G    V   LS D ++  A N L+S 
Sbjct:  116 RGANIEEHFHNIAKEQVQPYEELLLPLVQCEQLPKRPKRWAFHTGWTAYDPEDGTATPVDHPLEKGLVFDVEVCVSEGQAPVLATAVSTKRWYSWVSSKLTKHRLSVEKLEPLDVDTDSERPHYTTDELIPLGTTGPG----LVVGHNVSYDRARLKEQYLTEDTGTRFVDTMSLHMCVSGVTSYQRAMLKSKKEPAAEDLGWLEQSSLNSLVEVHRLYCGGDT--LSKEPRNIFVEGTLEQVRQSFQSLTNYCASDVEATHRILRVLYPLYAERFPHPASLAGMLEMGSAYLPVNSNWERYIREAQLTYEDL-SIEAKYHLGRRAEEACSLLLDDQYRQNLWLWDEDWSVQELKLKQPPKRKPLPTVELKDSGNTPEERRLQAKFQHLYDQQALLPARRPLLPGYPLWYRKLCRKPPAKRADEILEDDEEPWSPGASEISTGMQIAPKLLSLCWEGYPLHYEREQGWGFLVPFRSDSEGVDRLPMEQLLAHCPVPEFARLSASKAESDMAFDMLPGQVEQHLGKREHYKKLSQKQQRLETQYQGSGVWCNKVLDDCCFFLKLPHKNGPSFRVGNPLSKDFLNKFAENVLSSG 701

HSP 2 Score: 60.077 bits (144), Expect = 1.068e-7
Identity = 46/171 (26.90%), Postives = 73/171 (42.69%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRELMQCFL--------KSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMN-PMNDFCSETGRGIYYNYGIKPGFSL 2722
             G  S  FN +         +TPFL  + S+ L      E  Q FL        +S   D++  ++V  + L   M  + R  +   +E+R+L  E    K A A+H  +  T+    S + L+++P    F  SV++D   R    M+        G+   YGI+PG SL
Sbjct:  955 GGTESAMFNRLEEIATGSQPRTPFLGGRLSRALEADTGPEQEQRFLPTRINWVVQSGAVDFLHLMLVSMRWL---MGSHVRFCLSFHDELRYLVKEELSPKAALAMHITNLMTRSFCVSRIGLQDLPMSVAFFSSVEVDTVLRKECTMDCKTPSNPHGLRIGYGIQPGQSL 1122

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
Match: sp|Q12704|DPOG_SCHPO (DNA polymerase gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mip1 PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.751e-64
Identity = 136/498 (27.31%), Postives = 223/498 (44.78%), Query Frame = 3

Query:  348 PPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTA-------SLRQRYKTSEKFK----------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT---------------KPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDVGKEFLQSIGSCLFWKSSGNLIK 1709
            P  P+ +    GWTKY K   S S VP+PD   M+FD+EV+     +  +A  + +D+WY W+S  L+  +  +R ++ S+    LF           +GH VS+DR R+  EY  +SS   F+DTMS+H+A  GM +         R+ Y  S+  +                      W   +S N L DV   +        +K KR+ F +     ++     L+ YCA+D   T ++F+K+FP F +  PH +    ML L S++LP N+ W ++I    + +  +     + + + A     ++   D   KDPWL  L WT                 +P+WYK    K    + + +++T+   +A  LLRL+W   PL +   Y W V    +  K +I++++        RE      +   L+ N +IF  + HKDG +      LS           L S+ +V K+ L+   SC +W S+ + I+
Sbjct:  136 PVQPKTWKRQPGWTKYAKDG-SISCVPYPDSDCMVFDVEVLYKVSPFAVVATAVSEDAWYCWLSPWLLGKSENDRQLIPSNPKGALF-----------VGHNVSFDRQRIREEYNIKSSRNVFLDTMSLHVATHGMCSRQKPTWFKARKAYIRSQSTETSEDDDSSSFDDDYQNYLKQEPWLAHSSVNSLKDVAKFHC---NITLDKSKRDDFASLEKEPILQKLNELITYCAHDTYSTHQVFKKVFPQFLEVCPHPATFSAMLSLGSVFLPVNHSWTRYINGVEEQYQQMIQLVDQKLSQYAEKAKDLINTKDTVLKDPWLRQLDWTPCNLYRKLKKATQEVPVVPKWYK----KAYCKTEKRAVITAKSRLAPILLRLKWKKHPLAWSDTYGW-VFSVERTSKDEIEMLLDQGLVPCSRE------EDTKLDYNNYIFFKVPHKDGPEARCGSPLSKSYQRYFEEGILQSDYEVAKKALEMSASCSYWSSARDRIR 607

HSP 2 Score: 82.0333 bits (201), Expect = 3.751e-64
Identity = 88/354 (24.86%), Postives = 148/354 (41.81%), Query Frame = 2

Query: 1754 IIPPVIPISNPYRKIDAKLWFD-NFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYG-GNKEDIVHFLWKNVS-------------YNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLI---ISGNREL---MQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVK 2752
            I+P +IP+    R+     W   +    N++G E K+MI AP  Y FVG  + +   WI+ +  DS     GA+  G       L       T L+S  A I  + ++  +      +YG G K   +  +  N +             Y      K      L+  G      W  G  S  FN +    +    +TP L +  ++ L    +S N  +   +   ++SS  DY+  L+V    LI +  L +RLS+   +E+R+L  + D+Y++A+AL  A+  T+  F   L +  +P    F  SVDID   R +   D  + + +       I PG  L  + +  +++
Sbjct:  631 ILPCIIPMGTVTRRAVENTWLTASNSKKNRLGSELKAMIRAPDGYTFVGADVDSEELWIVALMGDSQFRLHGATALG----MMTLEGKKSEGTDLHSKTAAILGVSRDSAKVFNYGRLYGAGLKHTTLLLMQMNPTLKTAEAKELAKKLYASTKGVKSKMSKRLQEMGLPKLTFWSQGTESFVFNKLEAMAQLPSPRTPVLDAGITQALSSKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTVHDEVRYLSSDKDKYRVAFALQVANLWTRAFFCQRLGINELPQSVAFFSSVDIDHVLRKDVKMDCVTPSNK-----VPIPPGEELTIESVLEKLE 975

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
Match: sp|Q91684|DPOG1_XENLA (DNA polymerase subunit gamma-1 OS=Xenopus laevis OX=8355 GN=polg PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.738e-63
Identity = 148/422 (35.07%), Postives = 217/422 (51.42%), Query Frame = 3

Query:  105 IMLLNRRFITNFFFYKDFQLLYSTDIQFSVHKYSRFAVLSKYYNT----EINRHK----NEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDELIELFDNKDRNIF-------RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK---------------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            I +L++ F    F  K  Q     D+Q S+       +  +  +T    E+   K    N  E    LA +   PY    N L +   +P MP+ + +  GWT+Y         V FPDEK M+FD+EV V EG  P++AV     +WYSW S RLI+   T +++++ SD L  L  + + N         R V+GH VS+DRA +  +Y+ + S TRF+DTMSMH+AISG+T   R  +  S+  K                           W  ++S N L DV++LY     PP  K+ R +FV GS +D+   FQ LM+YCA DV  T E+FQ+ FP+F +R PH   L GMLE+   YLP N  W ++++++   +  +    +K ++K A +   +L K D YK+DPWLWDL+W
Sbjct:   50 IQMLSKGFHEQIFRGKQVQHA-EEDVQRSITHLKNHELWGQETSTVPDVELQLPKMYGNNIEEHFQILAQKQSLPYLEAANDLLN-CQLPAMPQTWAWQSGWTRYTATGEK-ELVDFPDEKAMVFDVEVCVTEGCCPTLAVAASPQNWYSWCSRRLIEGRYTWSKELLLSD-LFPLETSMNCNYMTKNNWTERLVVGHNVSFDRAHIKEQYLIKGSKTRFMDTMSMHMAISGLTGFQRTLWMASKYGKKKGLQEVKQHIKKTRSNFSGSPISSWDWVNISSINNLADVHALYVGG--PPLEKEARELFVKGSMSDIRTEFQELMRYCALDVQATHEVFQEQFPLFMERCPHPVTLSGMLEMGVSYLPVNQNWERYLDEAQTSYEELQKEMKKSLMKLANDACQLLTK-DAYKEDPWLWDLEW 464

HSP 2 Score: 81.6481 bits (200), Expect = 2.404e-14
Identity = 52/168 (30.95%), Postives = 79/168 (47.02%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSK---PLIISGN--RELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  S  FN +     S   KTP L  + S+   P  + G      +   ++SS  DY+  ++V  K L     ++ R  I   +E+R+L H  DRY+ A AL   +  T+  FAS L +++VP    F  +VDID+C R     D  + +   G+   YGI  G +L
Sbjct: 1020 GGTESQMFNKLETIAMSPSPKTPVLGCRISRALEPTAVKGEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEAYDIDGRFCISIHDEVRYLVHSKDRYRAALALQITNLLTRCMFASRLGIQDVPQSVAFFSAVDIDKCLRKEVTMDCSTPSNPNGMEKRYGIPQGEAL 1187

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
Match: sp|Q01941|DPOG_PICPA (DNA polymerase gamma OS=Komagataella pastoris OX=4922 GN=MIP1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.784e-63
Identity = 162/550 (29.45%), Postives = 239/550 (43.45%), Query Frame = 3

Query:  267 ERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRC---VIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGM---------------------TASLRQRYKTSEKFK----------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANI--GLVLGKDDNYK---KDPWLWDLKWT-KPL-----------------PRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPC-KMPKS------DIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDVGKEFLQSIGSCLFWKSSGNLI 1706
            E    L +   EPY  L++ L +   I P  E F +  GWT+Y     S  KVP+P E    FD+E +     +P +AV L   +WY WVS  L + + TN      D LI L      N F     ++GH VSYDRAR   EY  + +   ++DTM++H+++SGM                      AS++ + +  E  +                W   +S N L  V   Y   K     KD RN F T    ++  NF  LM+YCA DV  T ++FQK++P F+K  PH   L  + +++S  LPT  KW  +IE S + +       +++I K    I    V  KDD  K    DPWL  L WT  P+                 P WYK LI K+         LT+    +  LL+L W+G PLY+ +   W     C K+PK+       ++ ++   K   +   F +  ++ DL+  TF+  P  H DG    V+  ++   +       L S   + K+ LQ   +  +W SS   I
Sbjct:   85 EHFYKLGSASLEPYNPLIDELLNLNIIEPQFE-FAFQSGWTRYAPGEPS-EKVPYPLEDSYFFDVETMYKVSQYPVMAVALSDKAWYGWVSPYLTEESTTN------DHLIPL------NTFETEKFIVGHNVSYDRARALEEYNLKQTKAFWMDTMALHVSVSGMCTRQRGTWIKHNKKEQENTMSVASIKSKVQNEELQELLDSTSIEDPMLEDNPWINKSSLNSLERVAEFYCKIK---LKKDIRNSFATEDPDELRGNFDELMQYCAKDVFATGKVFQKVYPKFKKLIPHPVTLAALKDISSCILPTTTKWEDYIETSERLY----QESRRMIEKNLHVICEETVKLKDDPTKPWENDPWLSQLDWTIDPIRLTKKGEIHKNQKLPGYPNWYKQLIVKNELK------LTTKTRTSPLLLKLAWNGNPLYWIQTQGW-----CFKVPKNKTEEYEKLNFVMVSLKKLSEDPGF-ESIRAEDLKNFTFVKVP--HPDGPSARVTNCMTKSCLGFFEKGFLNSQYPLAKDALQMAVASSYWTSSRERI 599

HSP 2 Score: 81.2629 bits (199), Expect = 4.784e-63
Identity = 90/307 (29.32%), Postives = 136/307 (44.30%), Query Frame = 2

Query: 1754 IIPPVIPISNPYRKIDAKLWFD-NFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDS---IHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWK-NVSYNXXXXXXXXXXXXXXXXXXXXXXXXXN----GVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLI---ISGNREL---MQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDID 2629
            I+P +IP+    R+     W   +    N++G E KS+I AP+ Y FVG  + +   WI  +  DS   IHG       G  +    L       T L+S  A I  I +N  +      IYG   +     L K N + +  +AK  A+  Y   KG       K+    G  S  FN +    +    KTP L +  + PL    +S N  L   +   ++SS  DY+  LI+    LI    +++RL I   +EIR+L  E D+++ AYAL  ++  T+  F   L +  VP    F  +VD+D
Sbjct:  613 ILPQIIPMGTITRRAVENTWLTASNAKKNRLGSELKSLIEAPKGYCFVGADVDSEELWIASLIGDSVFKIHG-------GTAIGWMTLEGTKNEGTDLHSKTAKILGISRNEAKIFNYGRIYGAGIKFTTTLLKKFNPALSDAEAKATANALYTATKGISGRYDKKSIWYGGSESIIFNRLEAIAEMAHPKTPVLGAGITAPLQKANLSTNNFLTSRINWAIQSSGVDYLHLLIISMDYLIKLFDIDARLCITVHDEIRYLVKEEDKFRAAYALQISNLWTRAMFCQQLGINEVPQSCAFFSAVDLD 912

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
Match: sp|Q9Y767|DPOG_NEUCR (DNA polymerase gamma, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mip-1 PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.022e-59
Identity = 140/557 (25.13%), Postives = 230/557 (41.29%), Query Frame = 3

Query:  267 ERLNYLANELCEPYEILLNSLTHK-----WTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLR---QRYKTSEKFK----------------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT-------KP-----------------LPRWYKDL---IPKDSANSCEPSL-------------LTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDVGKEFLQSIGSCLFWKSSGNLIK 1709
            E  + L  +  EP+      LTH        +PP P  +    GWTKY++   + + V  P   +M FD+EV+  +  +  +A     D+WY+W+S  L+           ++   +L    D  + R ++GH + YDRA++  EY  + +   F+DTMS+H+A++GM +  R    ++K + + +                            W   +S N L DV   +   K    +KD R++F       ++N    L+ YCA DV +T +++Q +FP F    PH      +  L S+ LP N  W  +IE +   +  +    Q+ +              + Y  DPWL  L W+       KP                  P+WYKDL   +PK+ +   EP               LT    IA  LL+L W+G PL++  ++ W    P +  ++ I   +T P  F       D D    ++ +   FK + HKDG +      ++   +       L+S     KE L+   SC +W S+   IK
Sbjct:  128 EHFHKLGVDAAEPF------LTHAKQFADAHLPPKPTSWVRRSGWTKYNRDGTTENDV-LPQGNMMCFDVEVMYKDNPYAVMACAGTPDAWYAWLSPWLLGE---------TENKAQLVPMGDPTVDRIIVGHNIGYDRAKILEEYDLKQTRNFFLDTMSLHVAVNGMCSQQRPTWMKHKKARELREKAEHESASVELQEVLQGGSLTAEEADLWVDKSSINSLRDVAQFHLNVK---IDKDIRDVFAETDRNVILNQLDDLLTYCAADVQVTHQVYQVVFPNFLGVCPHPVSFAALRHLASVILPVNKTWDTYIETAEATYLQMLHGVQERLFTLMERTLDYKADPEKYLSDPWLSQLDWSGQEIKMAKPKKKGDVERPALNQKLPGYPQWYKDLFVKVPKELSGLDEPDKEQENRKARHEFINLTVRSRIAPLLLKLSWEGYPLFWSDQFGWTFQVPREKAETFIQRQMT-PVQFED----PDVDDRLRMDVDHKYFK-LPHKDGPNARCVNPMAKGYLPYFEKGILSSEYPYAKEALEMNASCSYWISARERIK 659

HSP 2 Score: 87.4261 bits (215), Expect = 1.022e-59
Identity = 93/344 (27.03%), Postives = 152/344 (44.19%), Query Frame = 2

Query: 1703 NQMIVK----------LNRNSTSNEMA---IIPPVIPISNPYRKIDAKLWFD-NFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDS---IHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWK-NVSYNXXXXXXXXXXXXXXXXXXXXXXXX-------XNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLI---ISGNRELMQCF---LKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWR 2641
            NQM+V           +N+++ SN      ++P VIP+    R+   + W   +    N++G E K+M+ AP  YVFVG  + +   WI  +  D+   +HG       G  +    L       T L+S  A+I  I +N  +      IYG   +     L + N S    +    A K Y   KG K  +         + G  S  FN++    + +  +TP L +  ++ L+   +S    L       ++SS  DY+  LI+    L     L  RL+I   +EIR+L  E D+Y++A AL  A+  T++ FA  + ++++P    F  +VDID   R
Sbjct:  660 NQMVVYEDQLPPSQRFVNKDADSNTPIGGFVLPQVIPMGTITRRAVERTWLTASNAKKNRVGSELKAMVRAPPGYVFVGADVDSEELWIASVVGDATFKLHG-------GNAIGFMTLEGTKSQGTDLHSRTASILGITRNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKGAKTNRKSLYKRPFWRGGTESFVFNMLEEFAEQERPRTPVLGAGITEALMSRWVSKGGFLTSRINWAIQSSGVDYLHLLIIAMDYLTRRFNLACRLAITVHDEIRYLAEEPDKYRVAMALQIANLWTRVMFAQQVGIQDLPQSCAFFSAVDIDHVLR 996

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
Match: A0A4V3SFV5 (POLAc domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_003474 PE=4 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 5.048e-95
Identity = 184/460 (40.00%), Postives = 266/460 (57.83%), Query Frame = 3

Query:  213 AVLSKYYNTEINRHKNEVERLNYLAN---ELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEK--------------------------------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGL--VLGKDDNYKKDPWLWDLKWTKP---------------LPRWYKDLIPKDSANSCE--PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPK 1430
            +VL++     I+  +++ ERL ++ N   +L  PY  LL+S +   TIPPMPE +    GWT+Y    +    V  P + +M+ DIEV++ EG+ P++AV L  + WYSWVS  L     +  + +  D LI ++D +D +  +CVIGHFVS+DRAR+  EY  Q + TRF+DT+S H+A+SG+T++ R    T+ K                                 +W + TS N L DVY LY   KEPPQ+K  R++F +G+  +V   FQ LM+YCA DV MT E+FQKL P+F++RFPH + LYGMLE+ S+YLP N+ W +F E +++ F       QK +L + A+  L      D + + DPWLWDL W+ P               LP+WY++LIPK    + +  P+LLT+ M IA KLLRL W GLPL+YD++ KWGVL P + P+
Sbjct:   72 SVLNELEKHGIDVTRSQPERLPHMQNISAQLVTPYLKLLDSFSG--TIPPMPESWSTQSGWTRY--SGDRIEGVRAPVDDIMVLDIEVLMEEGDLPTMAVVLTPNGWYSWVSPHLYSEKLSTNETL--DSLIPMYDGEDTSRPKCVIGHFVSFDRARLLEEYYLQGTGTRFLDTLSFHVAVSGLTSTQRHLKTTASKHLFNNKLWQKYMSTHGETSNLNNVEERANVMGLQWISETSLNNLTDVYRLYC-AKEPPQDKTARSVFESGTRQEVQTRFQELMRYCATDVSMTYEVFQKLLPLFKERFPHPATLYGMLEMGSMYLPINDSWSKFQENADRKFAE-NEQRQKHLLMQLADQALQHYSSPDTDPQNDPWLWDLDWSLPKIAKAKTEVDERLSKLPKWYRELIPKPIKENLDAGPALLTAQMRIAPKLLRLCWQGLPLHYDQELKWGVLIPGRAPQ 523

HSP 2 Score: 110.538 bits (275), Expect = 9.074e-21
Identity = 110/409 (26.89%), Postives = 173/409 (42.30%), Query Frame = 2

Query: 1643 R*RIFTIHWKLSILEIIRKFNQMIVKL-------------NRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYL-TNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWK------------------------NVSYNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPGFSLHFDDL 2737
            R R+    W+ S  + IR  NQM V L             N N + +  AI+P VI      R+    LW        N++G E KSM+ AP  Y FVG  + +   WI  +  D+  G  GA+ +G       L       T L++ +A I  I +N  + L    +YG   E   H L K                          S++    K   D         +    W+ G  S  FN +    +S +  TP L ++ ++ L     +E      +   ++SS  DY+ C+++    LI + KL +RL I   +E+R+LC ++   ++A AL  ++  T+  FA  L +R++P    F  SV+ID C R NP +D  + +   G+   YGI  G SL   ++
Sbjct:  811 RDRVHATFWQ-SYSKRIR--NQMAVWLPTSILPADVRNNPNFNPSGHHGAILPQVIVAGTVSRRAVEPLWLTASNADRNRLGSEIKSMVQAPPGYCFVGADVDSQEMWIAALIGDASFGFQGATPYG----WMTLEGNKADGTDLHTKIAQIMGITRNEAKVLNYARLYGSGYEFTKHLLTKFSNLTPEQAGLKANQLLRTTKGQRTGSHSRAWKKPGQDSTEQTNNASEPSARWQGGSESAVFNELEGIARSSEPCTPVLKAQMTRALNPKLVKEDFLPSRINWVVQSSAVDYLHCMLLVMGWLIQKYKLPARLCISIHDEVRYLCRQDAADRVALALQISNLFTRAFFAYQLGMRDLPESVAFFSSVEIDACLRKNPDDDCITPSNPDGLQKTYGIPSGQSLTIHEI 1212

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
Match: A0A4S2M0Z6 (POLAc domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_003474 PE=4 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 6.185e-94
Identity = 177/439 (40.32%), Postives = 254/439 (57.86%), Query Frame = 3

Query:  267 ERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEK--------------------------------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGL--VLGKDDNYKKDPWLWDLKWTKP---------------LPRWYKDLIPKDSANSCE--PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPK 1430
            + +  ++ +L  PY  LL+S +   TIPPMPE +    GWT+Y    +    V  P + +M+ DIEV++ EG+ P++AV L  + WYSWVS  L     +  + +  D LI ++D +D +  +CVIGHFVS+DRAR+  EY  Q + TRF+DT+S H+A+SG+T++ R    T+ K                                 +W + TS N L DVY LY   KEPPQ+K  R++F +G+  +V   FQ LM+YCA DV MT E+FQKL P+F++RFPH + LYGMLE+ S+YLP N+ W +F E +++ F       QK +L + A+  L      D + + DPWLWDL W+ P               LP+WY++LIPK    + +  P+LLT+ M IA KLLRL W GLPL+YD++ KWGVL P + P+
Sbjct:  108 QHMQNISAQLVTPYLKLLDSFSG--TIPPMPESWSTQSGWTRY--SGDRIEGVRAPVDDIMVLDIEVLMEEGDLPTMAVVLTPNGWYSWVSPHLYSEKLSTNETL--DSLIPMYDGEDTSRPKCVIGHFVSFDRARLLEEYYLQGTGTRFLDTLSFHVAVSGLTSTQRHLKTTASKHLFNNKLWQKYMSTHGETSNLNNVEERANVMGLQWISETSLNNLTDVYRLYC-AKEPPQDKTARSVFESGTRQEVQTRFQELMRYCATDVSMTYEVFQKLLPLFKERFPHPATLYGMLEMGSMYLPINDSWSKFQENADRKFAE-NEQRQKHLLMQLADQALQHYSSPDTDPQNDPWLWDLDWSLPKIAKAKTEVDERLSKLPKWYRELIPKPIKENLDAGPALLTAQMRIAPKLLRLCWQGLPLHYDQELKWGVLIPGRAPQ 538

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
Match: A0A4S2M109 (POLAc domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_003474 PE=4 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 4.100e-93
Identity = 177/439 (40.32%), Postives = 254/439 (57.86%), Query Frame = 3

Query:  267 ERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEK--------------------------------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGL--VLGKDDNYKKDPWLWDLKWTKP---------------LPRWYKDLIPKDSANSCE--PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPK 1430
            + +  ++ +L  PY  LL+S +   TIPPMPE +    GWT+Y    +    V  P + +M+ DIEV++ EG+ P++AV L  + WYSWVS  L     +  + +  D LI ++D +D +  +CVIGHFVS+DRAR+  EY  Q + TRF+DT+S H+A+SG+T++ R    T+ K                                 +W + TS N L DVY LY   KEPPQ+K  R++F +G+  +V   FQ LM+YCA DV MT E+FQKL P+F++RFPH + LYGMLE+ S+YLP N+ W +F E +++ F       QK +L + A+  L      D + + DPWLWDL W+ P               LP+WY++LIPK    + +  P+LLT+ M IA KLLRL W GLPL+YD++ KWGVL P + P+
Sbjct:  108 QHMQNISAQLVTPYLKLLDSFSG--TIPPMPESWSTQSGWTRY--SGDRIEGVRAPVDDIMVLDIEVLMEEGDLPTMAVVLTPNGWYSWVSPHLYSEKLSTNETL--DSLIPMYDGEDTSRPKCVIGHFVSFDRARLLEEYYLQGTGTRFLDTLSFHVAVSGLTSTQRHLKTTASKHLFNNKLWQKYMSTHGETSNLNNVEERANVMGLQWISETSLNNLTDVYRLYC-AKEPPQDKTARSVFESGTRQEVQTRFQELMRYCATDVSMTYEVFQKLLPLFKERFPHPATLYGMLEMGSMYLPINDSWSKFQENADRKFAE-NEQRQKHLLMQLADQALQHYSSPDTDPQNDPWLWDLDWSLPKIAKAKTEVDERLSKLPKWYRELIPKPIKENLDAGPALLTAQMRIAPKLLRLCWQGLPLHYDQELKWGVLIPGRAPQ 538

HSP 2 Score: 110.538 bits (275), Expect = 9.301e-21
Identity = 110/409 (26.89%), Postives = 173/409 (42.30%), Query Frame = 2

Query: 1643 R*RIFTIHWKLSILEIIRKFNQMIVKL-------------NRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYL-TNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWK------------------------NVSYNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPGFSLHFDDL 2737
            R R+    W+ S  + IR  NQM V L             N N + +  AI+P VI      R+    LW        N++G E KSM+ AP  Y FVG  + +   WI  +  D+  G  GA+ +G       L       T L++ +A I  I +N  + L    +YG   E   H L K                          S++    K   D         +    W+ G  S  FN +    +S +  TP L ++ ++ L     +E      +   ++SS  DY+ C+++    LI + KL +RL I   +E+R+LC ++   ++A AL  ++  T+  FA  L +R++P    F  SV+ID C R NP +D  + +   G+   YGI  G SL   ++
Sbjct:  826 RDRVHATFWQ-SYSKRIR--NQMAVWLPTSILPADVRNNPNFNPSGHHGAILPQVIVAGTVSRRAVEPLWLTASNADRNRLGSEIKSMVQAPPGYCFVGADVDSQEMWIAALIGDASFGFQGATPYG----WMTLEGNKADGTDLHTKIAQIMGITRNEAKVLNYARLYGSGYEFTKHLLTKFSNLTPEQAGLKANQLLRTTKGQRTGSHSRAWKKPGQDSTEQTNNASEPSARWQGGSESAVFNELEGIARSSEPCTPVLKAQMTRALNPKLVKEDFLPSRINWVVQSSAVDYLHCMLLVMGWLIQKYKLPARLCISIHDEVRYLCRQDAADRVALALQISNLFTRAFFAYQLGMRDLPESVAFFSSVEIDACLRKNPDDDCITPSNPDGLQKTYGIPSGQSLTIHEI 1227

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
Match: A0A419PZG4 (DNA polymerase subunit gamma-like protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=POLG PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.611e-92
Identity = 180/441 (40.82%), Postives = 257/441 (58.28%), Query Frame = 3

Query:  267 ERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEK--------------------------------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNH--QKIILKKAANIGL--VLGKDDNYKKDPWLWDLKWTKP---------------LPRWYKDLIPKDSANSCE--PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPK 1430
            + +  ++ +L  PY  LL+S +   TIPPMPE +    GWT+Y    +    V  P + +M+ DIEV++ EG+ P++AV L  + WYSWVS  L     + ++ +  D LI L+D +D +  +CVIGHFVS+DRAR+  EY  Q + TRF+DT+S H+A+SG+T++ R    T+ K                                 +W + TS N L DVY LY   KEPPQ+K  R++F +G+  +V   FQ LM+YCA DV MT E+FQKL P+F++RFPH + LYGMLE+ S+YLP N+ W +F E +++ F   G N   QK +L + A+  L      D + + DPWLWDL W+ P               LP+WY++LIPK    + +  P+LLT+ M IA KLLRL W GLPL+YD++ KWGVL P + P+
Sbjct:  135 QHMQNISAQLVTPYLKLLDSFSG--TIPPMPESWSTQSGWTRY--SGDQIESVRAPVDDIMVLDIEVLMEEGDLPTMAVVLTPNGWYSWVSPHLYSEKLSTKETL--DSLIPLYDGEDTSRPKCVIGHFVSFDRARLLEEYYLQGTGTRFLDTLSFHVAVSGLTSTQRHLKTTASKHLFNNKLWQKYMSTHGETSNLNNVEERANVMGLQWISETSLNNLTDVYRLYC-AKEPPQDKTARSVFESGTRQEVQTRFQELMRYCATDVSMTYEVFQKLLPLFKERFPHPATLYGMLEMGSMYLPINDSWSKFQENADRKF---GENEQRQKQLLMQLADQALQHYSSPDADPQNDPWLWDLDWSLPKIAKAKTEVDERLCKLPKWYRELIPKPIKENLDAGPALLTAQMRIAPKLLRLCWQGLPLHYDQELKWGVLIPGRAPQ 565

HSP 2 Score: 77.7962 bits (190), Expect = 1.247e-10
Identity = 49/164 (29.88%), Postives = 84/164 (51.22%), Query Frame = 2

Query: 2240 GVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPG 2713
            G  S  FN +    +S +  TP L ++ ++ L     +E      +   ++SS  DY+ C+++    LI +  L +RL I   +E+R+LC ++   ++A AL  ++  T+  FA  L +R++P    F  SV+ID C R NP +D  + +   G+   YGI  G
Sbjct: 1080 GSESAVFNELEGIARSSEPCTPVLKARMTRALNPKLVKEDFLPSRINWVVQSSAVDYLHCMLLVMGWLIQKYNLPARLCISIHDEVRYLCRQDAADRVALALQISNLFTRAFFAYQLGMRDLPESVAFFSSVEIDTCLRKNPEDDCITPSNPDGLRKTYGIPSG 1243

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BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
Match: A0A0V0J3Z5 (DNA polymerase subunit gamma-1 (Fragment) OS=Schistocephalus solidus OX=70667 GN=DPOG1 PE=4 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.964e-91
Identity = 180/445 (40.45%), Postives = 254/445 (57.08%), Query Frame = 3

Query:  255 KNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKY-DKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNK-DRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMT--------------------------ASLRQRY------KTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVL--GKDDNYKKDPWLWDLKWTKP---------------LPRWYKDLIPKDSANSC--EPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPK 1430
            +N  +    +A EL EPY  L+++   K  +P +P ++    GWT+Y D +A   ++V  P E ++ FD+EV+V E N P +AV +  ++ Y W+S+RL      N       +LI  + +   R+  + +IGHF+SYDRARV +EY+ Q +  RF+DTMSMHI++SG+T                          +S R +Y       TS + KW T TS NGL+DV+  Y   K+PPQNKDKR +F  G+  DV+NN Q L  YCA DVLMT E+F++L+P F+KRFPH   L G+LE+ S+YLP N  W +F  ++ K  YTI    Q+ +LK  A   L    G    Y+ DPWLWDL W+KP               LP+WY++LIPK    +    PSL+T+ M IA KLLRL W GLPL++D++  WG L P ++PK
Sbjct:  110 ENVSQHFETIAQELTEPYVRLIDATPPK--LPSLPPRWELNPGWTRYTDVQA---TRVCCPFEDLLFFDVEVLVQESNAPILAVAMSPNACYLWLSDRLFGKELANGRQCELPQLIPFYSSHLKRSSPKLIIGHFISYDRARVGDEYLPQITGLRFLDTMSMHISVSGLTTTQRHLKLASDKRLYNNKLWRSFFPESSSRGQYLPTNGNATSNELKWVTETSLNGLVDVFKFYC-KKDPPQNKDKRAVFEKGAIEDVVNNLQELATYCATDVLMTFEVFRELWPQFKKRFPHPVTLGGLLEMGSMYLPVNQSWIRFQREAEKT-YTILQEKQREMLKCLAEDALRRHSGPSKTYEGDPWLWDLDWSKPTRPSNKTEAAKEIANLPKWYRELIPKPIKENYMNGPSLITAQMKIAPKLLRLCWQGLPLHFDRELMWGTLIPGRIPK 547

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BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Cavefish
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:103040749])

HSP 1 Score: 226.098 bits (575), Expect = 1.176e-60
Identity = 133/375 (35.47%), Postives = 195/375 (52.00%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDEL-IELFDNKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK---------------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + Y  +I+ H         LA +   PY +   S   +  +P MP+K+ +  GWT+Y        KV FP+E  ++FD+EV + EG  P++AV +   +WYSW S RL++   T +  +  +D + +E   N  R        R VIGH VS+DRA +  +Y+ + S  RF+DTMS+H+AISG+T   R  +  S   K                           W  ++S N L DV++LY   +  P  K+ R+IFV GS  DV NNFQ LM+YCA DVL T E+F +   +F +R PH     GMLE+   YLP N  W ++IE +   +  +    +K ++  A +   +L +DD YK+DPWLWDL W
Sbjct:   95 LPQMYGDDIDEH------FRILAQKQSLPY-LEAASQLQQAHLPQMPQKWAWEVGWTRYGLDGQC-KKVNFPEENAVVFDVEVCMAEGRCPTLAVAVSPTAWYSWCSKRLVEERYTWSSQLTLADLIPLETPSNSSRPPGGQWKERLVIGHNVSFDRAHIKEQYLLKGSKMRFLDTMSLHMAISGLTGFQRSLWMASRHGKRRGLQEVKEHIKKLGRRPEGPMIGSWEWVNISSINNLTDVHALYVGGE--PLKKEPRDIFVKGSMNDVRNNFQELMQYCATDVLATHEVFTQQLSLFMERCPHPVTFAGMLEMGVSYLPVNESWGRYIEDAQDTYEELQREMKKSLMILADDACQLL-QDDRYKEDPWLWDLDW 458

HSP 2 Score: 83.5741 bits (205), Expect = 7.886e-16
Identity = 80/347 (23.05%), Postives = 140/347 (40.35%), Query Frame = 2

Query: 1751 AIIPPVIPISNPYRKIDAKLWFD-NFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDS-IHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYNXXXXXXXXXXXXXXXXXXXXXXXX---------------XNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPGFSL 2722
            AI+P V+      R+     W   +    +++G E K+M+  P  Y  VG  + +   WI  +  +S   G  G + FG       L       T L+S  AN   I +   +      IYG  +      L   + +N   ++  A     ++                          G  S+ FN + +   S+   TP L  + S+ L  +  ++      +   ++SS  DY+  ++V  + L+ E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L ++++P    F  +VDID+C R     D  + +   G+   +GI  G +L
Sbjct:  805 AILPQVVTAGTVTRRAVEPTWLTASNARRDRVGSELKAMVQVPPGYHLVGADVDSQELWIAAVLGESHFAGMHGCTAFG----WMTLQGKKSQGTDLHSRTANAVGISREHAKVFNYGRIYGAGQPFAERLL---MQFNHRLSQPEAADKAKQMYALTKGLRSFRNKKRWDLVGRRVWAGGTESEMFNKLESIAHSEQPATPVLGCRISRALEPAAVKDEFITSRVNWVVQSSAVDYLHLMLVAMRWLLEEFDIDGRFCISIHDEVRYLVKSEDRYRAALALQITNLLTRCMFAYKLGMKDLPQSVAFFSAVDIDQCLRKEVTMDCATPSNPIGLEGRFGIPQGEAL 1144

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Cavefish
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:103040749])

HSP 1 Score: 226.098 bits (575), Expect = 1.275e-60
Identity = 133/375 (35.47%), Postives = 195/375 (52.00%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDEL-IELFDNKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK---------------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + Y  +I+ H         LA +   PY +   S   +  +P MP+K+ +  GWT+Y        KV FP+E  ++FD+EV + EG  P++AV +   +WYSW S RL++   T +  +  +D + +E   N  R        R VIGH VS+DRA +  +Y+ + S  RF+DTMS+H+AISG+T   R  +  S   K                           W  ++S N L DV++LY   +  P  K+ R+IFV GS  DV NNFQ LM+YCA DVL T E+F +   +F +R PH     GMLE+   YLP N  W ++IE +   +  +    +K ++  A +   +L +DD YK+DPWLWDL W
Sbjct:   90 LPQMYGDDIDEH------FRILAQKQSLPY-LEAASQLQQAHLPQMPQKWAWEVGWTRYGLDGQC-KKVNFPEENAVVFDVEVCMAEGRCPTLAVAVSPTAWYSWCSKRLVEERYTWSSQLTLADLIPLETPSNSSRPPGGQWKERLVIGHNVSFDRAHIKEQYLLKGSKMRFLDTMSLHMAISGLTGFQRSLWMASRHGKRRGLQEVKEHIKKLGRRPEGPMIGSWEWVNISSINNLTDVHALYVGGE--PLKKEPRDIFVKGSMNDVRNNFQELMQYCATDVLATHEVFTQQLSLFMERCPHPVTFAGMLEMGVSYLPVNESWGRYIEDAQDTYEELQREMKKSLMILADDACQLL-QDDRYKEDPWLWDLDW 453

HSP 2 Score: 74.7146 bits (182), Expect = 4.186e-13
Identity = 45/165 (27.27%), Postives = 80/165 (48.48%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPG 2713
             G  S+ FN + +   S+   TP L  + S+ L  +  ++      +   ++SS  DY+  ++V  + L+ E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L ++++P    F  +VDID+C R     D  + +   G+   +GI  G
Sbjct:  957 GGTESEMFNKLESIAHSEQPATPVLGCRISRALEPAAVKDEFITSRVNWVVQSSAVDYLHLMLVAMRWLLEEFDIDGRFCISIHDEVRYLVKSEDRYRAALALQITNLLTRCMFAYKLGMKDLPQSVAFFSAVDIDQCLRKEVTMDCATPSNPIGLEGRFGIPQG 1121

HSP 3 Score: 50.8322 bits (120), Expect = 7.175e-6
Identity = 41/153 (26.80%), Postives = 60/153 (39.22%), Query Frame = 3

Query: 1254 PRWYKDLIPK-----DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKP---------------------CKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSN 1634
            P WY+ L  +     D A S   SL+T  M +  KL+ L WDG PL+Y  K+ WG L P                     C + K D+   + +     +  Y   +   +D+      F  + HKDG +  V    S D +S +    L S 
Sbjct:  535 PGWYRKLCARMSEKEDEAWSPGASLITLQMRLTPKLMGLTWDGFPLHYTDKHGWGYLVPGHRDNLDTTEDSEGPVCPHRECLLVKLDLRSSLELDAGESECPYHHGNGPYNDVNIPGVWFFKLPHKDGNENNVGSPFSKDFLSKMEDGTLHSG 687

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Cavefish
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:103040749])

HSP 1 Score: 226.098 bits (575), Expect = 1.303e-60
Identity = 133/375 (35.47%), Postives = 195/375 (52.00%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDEL-IELFDNKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK---------------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + Y  +I+ H         LA +   PY +   S   +  +P MP+K+ +  GWT+Y        KV FP+E  ++FD+EV + EG  P++AV +   +WYSW S RL++   T +  +  +D + +E   N  R        R VIGH VS+DRA +  +Y+ + S  RF+DTMS+H+AISG+T   R  +  S   K                           W  ++S N L DV++LY   +  P  K+ R+IFV GS  DV NNFQ LM+YCA DVL T E+F +   +F +R PH     GMLE+   YLP N  W ++IE +   +  +    +K ++  A +   +L +DD YK+DPWLWDL W
Sbjct:   95 LPQMYGDDIDEH------FRILAQKQSLPY-LEAASQLQQAHLPQMPQKWAWEVGWTRYGLDGQC-KKVNFPEENAVVFDVEVCMAEGRCPTLAVAVSPTAWYSWCSKRLVEERYTWSSQLTLADLIPLETPSNSSRPPGGQWKERLVIGHNVSFDRAHIKEQYLLKGSKMRFLDTMSLHMAISGLTGFQRSLWMASRHGKRRGLQEVKEHIKKLGRRPEGPMIGSWEWVNISSINNLTDVHALYVGGE--PLKKEPRDIFVKGSMNDVRNNFQELMQYCATDVLATHEVFTQQLSLFMERCPHPVTFAGMLEMGVSYLPVNESWGRYIEDAQDTYEELQREMKKSLMILADDACQLL-QDDRYKEDPWLWDLDW 458

HSP 2 Score: 75.8702 bits (185), Expect = 1.834e-13
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPGFSL 2722
             G  S+ FN + +   S+   TP L  + S+ L  +  ++      +   ++SS  DY+  ++V  + L+ E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L ++++P    F  +VDID+C R     D  + +   G+   +GI  G +L
Sbjct: 1018 GGTESEMFNKLESIAHSEQPATPVLGCRISRALEPAAVKDEFITSRVNWVVQSSAVDYLHLMLVAMRWLLEEFDIDGRFCISIHDEVRYLVKSEDRYRAALALQITNLLTRCMFAYKLGMKDLPQSVAFFSAVDIDQCLRKEVTMDCATPSNPIGLEGRFGIPQGEAL 1185

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Cavefish
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:103040749])

HSP 1 Score: 226.098 bits (575), Expect = 1.303e-60
Identity = 133/375 (35.47%), Postives = 195/375 (52.00%), Query Frame = 3

Query:  219 LSKYYNTEINRHKNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNT-NRDIVYSDEL-IELFDNKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK---------------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW 1241
            L + Y  +I+ H         LA +   PY +   S   +  +P MP+K+ +  GWT+Y        KV FP+E  ++FD+EV + EG  P++AV +   +WYSW S RL++   T +  +  +D + +E   N  R        R VIGH VS+DRA +  +Y+ + S  RF+DTMS+H+AISG+T   R  +  S   K                           W  ++S N L DV++LY   +  P  K+ R+IFV GS  DV NNFQ LM+YCA DVL T E+F +   +F +R PH     GMLE+   YLP N  W ++IE +   +  +    +K ++  A +   +L +DD YK+DPWLWDL W
Sbjct:   95 LPQMYGDDIDEH------FRILAQKQSLPY-LEAASQLQQAHLPQMPQKWAWEVGWTRYGLDGQC-KKVNFPEENAVVFDVEVCMAEGRCPTLAVAVSPTAWYSWCSKRLVEERYTWSSQLTLADLIPLETPSNSSRPPGGQWKERLVIGHNVSFDRAHIKEQYLLKGSKMRFLDTMSLHMAISGLTGFQRSLWMASRHGKRRGLQEVKEHIKKLGRRPEGPMIGSWEWVNISSINNLTDVHALYVGGE--PLKKEPRDIFVKGSMNDVRNNFQELMQYCATDVLATHEVFTQQLSLFMERCPHPVTFAGMLEMGVSYLPVNESWGRYIEDAQDTYEELQREMKKSLMILADDACQLL-QDDRYKEDPWLWDLDW 458

HSP 2 Score: 75.8702 bits (185), Expect = 1.834e-13
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRE-----LMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPGFSL 2722
             G  S+ FN + +   S+   TP L  + S+ L  +  ++      +   ++SS  DY+  ++V  + L+ E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L ++++P    F  +VDID+C R     D  + +   G+   +GI  G +L
Sbjct: 1018 GGTESEMFNKLESIAHSEQPATPVLGCRISRALEPAAVKDEFITSRVNWVVQSSAVDYLHLMLVAMRWLLEEFDIDGRFCISIHDEVRYLVKSEDRYRAALALQITNLLTRCMFAYKLGMKDLPQSVAFFSAVDIDQCLRKEVTMDCATPSNPIGLEGRFGIPQGEAL 1185

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Sea Lamprey
Match: polg (polymerase (DNA directed), gamma [Source:ZFIN;Acc:ZDB-GENE-060303-1])

HSP 1 Score: 210.305 bits (534), Expect = 1.254e-57
Identity = 120/347 (34.58%), Postives = 176/347 (50.72%), Query Frame = 3

Query:  342 TIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIEL-------------------FDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEKFK--------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT 1244
             +P +P ++ Y  GWT+Y    +    VPFPDE  ++FD+EV V EG+ P++AV     +WYSW S RL++   +    +   +LI +                     ++  +  R V+GH VS+DRA V  +Y   ++  RF+DTMS+H+AISG+T   R  +                   +T +KF         W  V+S N L+DV+ LY   +     K++R++FV GS  DV  +FQ LM YCA DV  T E+F +  P+F KR PH   L GMLE+   YLP N+ W +++ +S+ D Y       K  L   AN    L + + YK DPW WD  W+
Sbjct:   99 ALPALPREWRYEAGWTRYGPDGH-VEAVPFPDEPGLVFDVEVCVTEGHCPTLAVACSPAAWYSWCSRRLVERRFSWPQQLSLQDLIPMESGSGSRSSASSSSTSSSSSSSQGDSTERLVVGHNVSFDRAHVREQYQLATTRLRFLDTMSLHMAISGLTGFQRSLWMASRHGKRRGLQEVQEHMARTRQKFDGPAMGAWDWVDVSSINNLVDVHGLYVGGQA--LQKEERDVFVKGSMEDVRGSFQELMSYCARDVKATHEVFCQQLPLFMKRCPHPVTLAGMLEMGQCYLPVNHNWERYVSESH-DTYQELQREMKQSLMSLANEACGLLQGERYKDDPWFWDQDWS 441

HSP 2 Score: 52.373 bits (124), Expect = 4.590e-7
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 3

Query: 1254 PRWYKDLIP--KDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKM 1424
            P WY+ L P   D   S  PSLL+  M +  KLLRL WDG PL++   + WG L P ++
Sbjct:  522 PAWYRKLCPPPSDPEWSPGPSLLSLQMRLTPKLLRLSWDGFPLHHTTPHGWGYLVPGRV 580

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Yeast
Match: MIP1 (Mitochondrial DNA polymerase gamma; single subunit of mitochondrial DNA polymerase in yeast, in contrast to metazoan complex of catalytic and accessory subunits; polymorphic in yeast, petites occur more frequently in some lab strains; human ortholog POLG complements yeast mip1 mutant; mutations in human POLG associated with Alpers-Huttenlocher syndrome (AHS), progressive external ophthalmoplegia (PEO), parkinsonism, other mitochondrial diseases [Source:SGD;Acc:S000005857])

HSP 1 Score: 168.703 bits (426), Expect = 4.910e-43
Identity = 115/379 (30.34%), Postives = 177/379 (46.70%), Query Frame = 3

Query:  381 GWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFK--------------------WKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTN-NKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW-TKPL-----------------PRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKW 1400
            GW KY     +  +V +PDE++++FD+E + N  ++P++A  L   +WY W S            I   D+   L      N  + +IGH V+YDRARV  EY  + S   F+DT S+HIA  G+ +  R  +  + K K                    W  V++ N L DV   +    +   +K  R+ F +   + +I NFQ L+ YCA DV  T+++F ++FP+F K+ PH     G+  L+   LPT  N W  ++  S   +       +  I++   +I L+  K D Y KDPWL  L W TKPL                 P WY+ L P  S ++ EP +   S  I + L +L W+  P+ + K+  W
Sbjct:  147 GWVKY-VPGMAPVEVAYPDEELVVFDVETLYNVSDYPTLATALSSTAWYLWCSPF----------ICGGDDPAALIPLNTLNKEQVIIGHNVAYDRARVLEEYNFRDSKAFFLDTQSLHIASFGLCSRQRPMFMKNNKKKEAEVESEVHPEISIEDYDDPWLNVSALNSLKDVAKFHC---KIDLDKTDRDFFASTDKSTIIENFQKLVNYCATDVTATSQVFDEIFPVFLKKCPHPVSFAGLKSLSKCILPTKLNDWNDYLNSSESLYQQSKVQIESKIVQIIKDIVLLKDKPDFYLKDPWLSQLDWTTKPLRLTKKGVPAKCQKLPGFPEWYRQLFP--SKDTVEPKITIKSRIIPI-LFKLSWENSPVIWSKESGW 508

HSP 2 Score: 75.0998 bits (183), Expect = 4.217e-14
Identity = 83/326 (25.46%), Postives = 136/326 (41.72%), Query Frame = 2

Query: 1721 LNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFD-NFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFF-----NVMYNEIKS----KDLKTPFLSSKFSKPLIISGNR------ELMQCFLKSSVSDYI---CCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWR 2641
            LN   T++   IIP ++P+    R+     W   +    N+IG E K+ + AP  Y FVG  + +   WI  +  DSI    G +  G       L       T L++  A I    +N  +      IYG   +     L +   +N     +   K   KL      K  ++ +   F+     ++++N+++S    +  KTP L    +  L+    R        +   ++SS  DY+   CC + Y   +I +  L +RL I   +EIRFL  E D+Y+ A AL  ++  T+  F   + +  +P    F   VDID   R
Sbjct:  632 LNNEKTNDLAIIIPKIVPMGTITRRAVENAWLTASNAKANRIGSELKTQVKAPPGYCFVGADVDSEELWIASLVGDSIFNVHGGTAIG----WMCLEGTKNEGTDLHTKTAQILGCSRNEAKIFNYGRIYGAGAKFASQLLKR---FNPSLTDEETKKIANKLYENTKGKTKRSKLFKKFWYGGSESILFNKLESIAEQETPKTPVLGCGITYSLMKKNLRANSFLPSRINWAIQSSGVDYLHLLCCSMEY---IIKKYNLEARLCISIHDEIRFLVSEKDKYRAAMALQISNIWTRAMFCQQMGINELPQNCAFFSQVDIDSVIR 947

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:101156890])

HSP 1 Score: 238.424 bits (607), Expect = 1.297e-64
Identity = 160/497 (32.19%), Postives = 227/497 (45.67%), Query Frame = 3

Query:  255 KNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFD--NKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEK--------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW--------------------------TKPLPRWYKDLIP-------------------KDSANS------------------CE-----------PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            KN  E    LA +   PY   +  L     +P MP+++ +  GWT+Y     +  KV FPDE  ++FD+EV + EG  P++AV L   +WYSW S RL++   +  + +   ELI L    N  R        R ++GH VS+DR+ +  +Y+ + S  RF+DTMS+H+AISG+T   R  +                   KT +K        + W  ++S N L DVY LY     PP  K+ R IF+ G+ TDV NNFQ LM+YCA DV  T ++F +  P+F +R PH     GMLE+   YLP N  W +++E   +D Y       K  L   A+    L +D  YK+DPWLWDL+W                          + PLP W  D  P                   K++ N                   CE            SL++  M +  KL+ L WDG PL+Y +K+ WG L P +
Sbjct:  105 KNIDEHFRILAEKQSLPYLEAVTKLLQA-ELPSMPQEWSWEVGWTRYGPNGGT-QKVDFPDESALVFDVEVCMTEGRCPTLAVALSPTNWYSWCSKRLLEERYSWSNQLSLAELIPLETPLNSSRPPGGQWKERLIVGHNVSFDRSHIKEQYLLKGSIVRFLDTMSLHMAISGLTGFQRTLWMANKLGKKRGLQEVKEHIKKTGQKRDGPVIGSWDWVNISSINNLADVYDLYVGG--PPLQKEAREIFIKGNMTDVRNNFQELMQYCALDVEATHQVFTEQMPLFMERCPHPVTFAGMLEMGVSYLPVNQNWHRYLEDC-QDVYDDLQREMKKSLMTLADDACQLLQDARYKEDPWLWDLEWDVQEFKQKKVPTSKKKPAKKTAEAQVSTPLPDWEDDPGPPSEEETEGLCPSRLAVEKLKETVNRLPKRRQHLPGHPGWYRKLCEKMSQEDGWSPGASLISLQMRLTPKLMGLMWDGFPLHYTEKHGWGYLVPGR 596

HSP 2 Score: 84.7297 bits (208), Expect = 2.869e-16
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNR-----ELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  SD FN + +  +S    TP L  + S+ L     R       +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L L+++P    F  SVD+D+C R   + D  + +   G+   YG+ PG +L
Sbjct:  976 GGTESDMFNKLESIAQSAQPATPVLHCRISRALEPKAVRNEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEHNIDGRFCISIHDEVRYLVRSEDRYRAALALQITNLLTRSVFAHALGLQDLPQSVAFFSSVDVDQCLRKEVIMDCVTPSNPTGLERRYGLPPGEAL 1143

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:101156890])

HSP 1 Score: 238.039 bits (606), Expect = 1.815e-64
Identity = 160/497 (32.19%), Postives = 227/497 (45.67%), Query Frame = 3

Query:  255 KNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFD--NKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEK--------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW--------------------------TKPLPRWYKDLIP-------------------KDSANS------------------CE-----------PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            KN  E    LA +   PY   +  L     +P MP+++ +  GWT+Y     +  KV FPDE  ++FD+EV + EG  P++AV L   +WYSW S RL++   +  + +   ELI L    N  R        R ++GH VS+DR+ +  +Y+ + S  RF+DTMS+H+AISG+T   R  +                   KT +K        + W  ++S N L DVY LY     PP  K+ R IF+ G+ TDV NNFQ LM+YCA DV  T ++F +  P+F +R PH     GMLE+   YLP N  W +++E   +D Y       K  L   A+    L +D  YK+DPWLWDL+W                          + PLP W  D  P                   K++ N                   CE            SL++  M +  KL+ L WDG PL+Y +K+ WG L P +
Sbjct:  116 KNIDEHFRILAEKQSLPYLEAVTKLLQA-ELPSMPQEWSWEVGWTRYGPNGGT-QKVDFPDESALVFDVEVCMTEGRCPTLAVALSPTNWYSWCSKRLLEERYSWSNQLSLAELIPLETPLNSSRPPGGQWKERLIVGHNVSFDRSHIKEQYLLKGSIVRFLDTMSLHMAISGLTGFQRTLWMANKLGKKRGLQEVKEHIKKTGQKRDGPVIGSWDWVNISSINNLADVYDLYVGG--PPLQKEAREIFIKGNMTDVRNNFQELMQYCALDVEATHQVFTEQMPLFMERCPHPVTFAGMLEMGVSYLPVNQNWHRYLEDC-QDVYDDLQREMKKSLMTLADDACQLLQDARYKEDPWLWDLEWDVQEFKQKKVPTSKKKPAKKTAEAQVSTPLPDWEDDPGPPSEEETEGLCPSRLAVEKLKETVNRLPKRRQHLPGHPGWYRKLCEKMSQEDGWSPGASLISLQMRLTPKLMGLMWDGFPLHYTEKHGWGYLVPGR 607

HSP 2 Score: 84.7297 bits (208), Expect = 3.119e-16
Identity = 59/215 (27.44%), Postives = 96/215 (44.65%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNR-----ELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSLHFDDLAAQVKI*YFSVYCIFIFEWILLINIFYFVLIKLFTIFLILRS 2863
             G  SD FN + +  +S    TP L  + S+ L     R       +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L L+++P    F  SVD+D+C R   + D  + +   G+   YG+ PG                   + +  F+    +N+F  + I L  IF +L+S
Sbjct: 1004 GGTESDMFNKLESIAQSAQPATPVLHCRISRALEPKAVRNEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEHNIDGRFCISIHDEVRYLVRSEDRYRAALALQITNLLTRSVFAHALGLQDLPQSVAFFSSVDVDQCLRKEVIMDCVTPSNPTGLERRYGLPPG------------------EFWVLFFQSRAGLNLFAILFITL-CIFPVLQS 1199

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:101156890])

HSP 1 Score: 238.039 bits (606), Expect = 1.997e-64
Identity = 160/497 (32.19%), Postives = 227/497 (45.67%), Query Frame = 3

Query:  255 KNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFD--NKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEK--------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW--------------------------TKPLPRWYKDLIP-------------------KDSANS------------------CE-----------PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            KN  E    LA +   PY   +  L     +P MP+++ +  GWT+Y     +  KV FPDE  ++FD+EV + EG  P++AV L   +WYSW S RL++   +  + +   ELI L    N  R        R ++GH VS+DR+ +  +Y+ + S  RF+DTMS+H+AISG+T   R  +                   KT +K        + W  ++S N L DVY LY     PP  K+ R IF+ G+ TDV NNFQ LM+YCA DV  T ++F +  P+F +R PH     GMLE+   YLP N  W +++E   +D Y       K  L   A+    L +D  YK+DPWLWDL+W                          + PLP W  D  P                   K++ N                   CE            SL++  M +  KL+ L WDG PL+Y +K+ WG L P +
Sbjct:  105 KNIDEHFRILAEKQSLPYLEAVTKLLQA-ELPSMPQEWSWEVGWTRYGPNGGT-QKVDFPDESALVFDVEVCMTEGRCPTLAVALSPTNWYSWCSKRLLEERYSWSNQLSLAELIPLETPLNSSRPPGGQWKERLIVGHNVSFDRSHIKEQYLLKGSIVRFLDTMSLHMAISGLTGFQRTLWMANKLGKKRGLQEVKEHIKKTGQKRDGPVIGSWDWVNISSINNLADVYDLYVGG--PPLQKEAREIFIKGNMTDVRNNFQELMQYCALDVEATHQVFTEQMPLFMERCPHPVTFAGMLEMGVSYLPVNQNWHRYLEDC-QDVYDDLQREMKKSLMTLADDACQLLQDARYKEDPWLWDLEWDVQEFKQKKVPTSKKKPAKKTAEAQVSTPLPDWEDDPGPPSEEETEGLCPSRLAVEKLKETVNRLPKRRQHLPGHPGWYRKLCEKMSQEDGWSPGASLISLQMRLTPKLMGLMWDGFPLHYTEKHGWGYLVPGR 596

HSP 2 Score: 84.7297 bits (208), Expect = 2.934e-16
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNR-----ELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  SD FN + +  +S    TP L  + S+ L     R       +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L L+++P    F  SVD+D+C R   + D  + +   G+   YG+ PG +L
Sbjct: 1014 GGTESDMFNKLESIAQSAQPATPVLHCRISRALEPKAVRNEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEHNIDGRFCISIHDEVRYLVRSEDRYRAALALQITNLLTRSVFAHALGLQDLPQSVAFFSSVDVDQCLRKEVIMDCVTPSNPTGLERRYGLPPGEAL 1181

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:101156890])

HSP 1 Score: 238.039 bits (606), Expect = 1.997e-64
Identity = 160/497 (32.19%), Postives = 227/497 (45.67%), Query Frame = 3

Query:  255 KNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFD--NKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRY-------------------KTSEK--------FKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW--------------------------TKPLPRWYKDLIP-------------------KDSANS------------------CE-----------PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            KN  E    LA +   PY   +  L     +P MP+++ +  GWT+Y     +  KV FPDE  ++FD+EV + EG  P++AV L   +WYSW S RL++   +  + +   ELI L    N  R        R ++GH VS+DR+ +  +Y+ + S  RF+DTMS+H+AISG+T   R  +                   KT +K        + W  ++S N L DVY LY     PP  K+ R IF+ G+ TDV NNFQ LM+YCA DV  T ++F +  P+F +R PH     GMLE+   YLP N  W +++E   +D Y       K  L   A+    L +D  YK+DPWLWDL+W                          + PLP W  D  P                   K++ N                   CE            SL++  M +  KL+ L WDG PL+Y +K+ WG L P +
Sbjct:  105 KNIDEHFRILAEKQSLPYLEAVTKLLQA-ELPSMPQEWSWEVGWTRYGPNGGT-QKVDFPDESALVFDVEVCMTEGRCPTLAVALSPTNWYSWCSKRLLEERYSWSNQLSLAELIPLETPLNSSRPPGGQWKERLIVGHNVSFDRSHIKEQYLLKGSIVRFLDTMSLHMAISGLTGFQRTLWMANKLGKKRGLQEVKEHIKKTGQKRDGPVIGSWDWVNISSINNLADVYDLYVGG--PPLQKEAREIFIKGNMTDVRNNFQELMQYCALDVEATHQVFTEQMPLFMERCPHPVTFAGMLEMGVSYLPVNQNWHRYLEDC-QDVYDDLQREMKKSLMTLADDACQLLQDARYKEDPWLWDLEWDVQEFKQKKVPTSKKKPAKKTAEAQVSTPLPDWEDDPGPPSEEETEGLCPSRLAVEKLKETVNRLPKRRQHLPGHPGWYRKLCEKMSQEDGWSPGASLISLQMRLTPKLMGLMWDGFPLHYTEKHGWGYLVPGR 596

HSP 2 Score: 84.7297 bits (208), Expect = 2.934e-16
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNR-----ELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  SD FN + +  +S    TP L  + S+ L     R       +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L L+++P    F  SVD+D+C R   + D  + +   G+   YG+ PG +L
Sbjct: 1014 GGTESDMFNKLESIAQSAQPATPVLHCRISRALEPKAVRNEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEHNIDGRFCISIHDEVRYLVRSEDRYRAALALQITNLLTRSVFAHALGLQDLPQSVAFFSSVDVDQCLRKEVIMDCVTPSNPTGLERRYGLPPGEAL 1181

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
Match: polg (DNA polymerase gamma, catalytic subunit [Source:NCBI gene;Acc:101156890])

HSP 1 Score: 197.978 bits (502), Expect = 1.251e-51
Identity = 143/470 (30.43%), Postives = 208/470 (44.26%), Query Frame = 3

Query:  255 KNEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFD--NKDRNIF-----RCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKW--------------------------TKPLPRWYKDLIP-------------------KDSANS------------------CE-----------PSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCK 1421
            KN  E    LA +   PY   +  L     +P MP+++ +  GWT+Y     +  KV FPDE  ++FD+EV + EG  P++AV L   +WYSW S RL++   +  + +   ELI L    N  R        R ++GH VS+DR+ +  +Y+ + S  RF+DTMS+H+AISG+T   R  +  ++  K +      GL +V               K +I  TG   D       LM+YCA DV  T ++F +  P+F +R PH     GMLE+   YLP N  W +++E   +D Y       K  L   A+    L +D  YK+DPWLWDL+W                          + PLP W  D  P                   K++ N                   CE            SL++  M +  KL+ L WDG PL+Y +K+ WG L P +
Sbjct:   56 KNIDEHFRILAEKQSLPYLEAVTKLLQA-ELPSMPQEWSWEVGWTRYGPNGGT-QKVDFPDESALVFDVEVCMTEGRCPTLAVALSPTNWYSWCSKRLLEERYSWSNQLSLAELIPLETPLNSSRPPGGQWKERLIVGHNVSFDRSHIKEQYLLKGSIVRFLDTMSLHMAISGLTGFQRTLWMANKLGKKR------GLQEV---------------KEHIKKTGQKRD---GPVELMQYCALDVEATHQVFTEQMPLFMERCPHPVTFAGMLEMGVSYLPVNQNWHRYLEDC-QDVYDDLQREMKKSLMTLADDACQLLQDARYKEDPWLWDLEWDVQEFKQKKVPTSKKKPAKKTAEAQVSTPLPDWEDDPGPPSEEETEGLCPSRLAVEKLKETVNRLPKRRQHLPGHPGWYRKLCEKMSQEDGWSPGASLISLQMRLTPKLMGLMWDGFPLHYTEKHGWGYLVPGR 498

HSP 2 Score: 84.7297 bits (208), Expect = 3.101e-16
Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 2

Query: 2237 NGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNR-----ELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETG-RGIYYNYGIKPGFSL 2722
             G  SD FN + +  +S    TP L  + S+ L     R       +   ++SS  DY+  ++V  K L  E  ++ R  I   +E+R+L    DRY+ A AL   +  T+  FA  L L+++P    F  SVD+D+C R   + D  + +   G+   YG+ PG +L
Sbjct:  916 GGTESDMFNKLESIAQSAQPATPVLHCRISRALEPKAVRNEFITSRVNWVVQSSAVDYLHLMLVAMKWLFEEHNIDGRFCISIHDEVRYLVRSEDRYRAALALQITNLLTRSVFAHALGLQDLPQSVAFFSSVDVDQCLRKEVIMDCVTPSNPTGLERRYGLPPGEAL 1083

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Planmine SMEST
Match: SMESG000050769.1 (SMESG000050769.1)

HSP 1 Score: 934.095 bits (2413), Expect = 0.000e+0
Identity = 449/452 (99.34%), Postives = 451/452 (99.78%), Query Frame = 3

Query:  354 MPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDVGKEFLQSIGSCLFWKSSGNLIK 1709
            MPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTR+VDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGL LGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLD+GKEFLQSIGSCLFWKSSGNLIK
Sbjct:    1 MPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRYVDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLALGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDIGKEFLQSIGSCLFWKSSGNLIK 452

HSP 2 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 345/351 (98.29%), Postives = 350/351 (99.72%), Query Frame = 2

Query: 1703 NQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI 2755
            NQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVLNAGLNNL+GFNTTLYSNLAN+TNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYN+IDAKKYADKYYLKLKGKKIE+IW+NGVLSDFFNVMYN IKSKDLKTPFLSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI
Sbjct:  453 NQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVLNAGLNNLMGFNTTLYSNLANMTNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYNMIDAKKYADKYYLKLKGKKIERIWQNGVLSDFFNVMYNVIKSKDLKTPFLSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI 803

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Planmine SMEST
Match: SMESG000050769.1 (SMESG000050769.1)

HSP 1 Score: 927.932 bits (2397), Expect = 0.000e+0
Identity = 449/456 (98.46%), Postives = 451/456 (98.90%), Query Frame = 3

Query:  354 MPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQ----SSNTRFVDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDVGKEFLQSIGSCLFWKSSGNLIK 1709
            MPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQ    SSNTR+VDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGL LGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLD+GKEFLQSIGSCLFWKSSGNLIK
Sbjct:    1 MPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQWLDESSNTRYVDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLALGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITVPKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISNLALNRLTSNLDIGKEFLQSIGSCLFWKSSGNLIK 456

HSP 2 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 345/351 (98.29%), Postives = 350/351 (99.72%), Query Frame = 2

Query: 1703 NQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI 2755
            NQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVLNAGLNNL+GFNTTLYSNLAN+TNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYN+IDAKKYADKYYLKLKGKKIE+IW+NGVLSDFFNVMYN IKSKDLKTPFLSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI
Sbjct:  457 NQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVLNAGLNNLMGFNTTLYSNLANMTNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSYNMIDAKKYADKYYLKLKGKKIERIWQNGVLSDFFNVMYNVIKSKDLKTPFLSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI 807

[Close]

BLAST of DNA polymerase subunit gamma-1 vs. Planmine SMEST
Match: SMESG000050799.1 (SMESG000050799.1)

HSP 1 Score: 323.553 bits (828), Expect = 1.271e-94
Identity = 175/422 (41.47%), Postives = 247/422 (58.53%), Query Frame = 3

Query:  273 LNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKANSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKSNNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSNTRFVDTMSMHIAISGMTASLRQRYKTS-------------------------------EKFKWKTVTSGNGLLDVYSLYFPNKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPIFQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKIILKKAANIGLVLGKDDNYKKDPWLWDLKWT----KPLPRWYKDLIPK-DSANSCEPSLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKP-CKMP 1427
            L   A  L +PY  LL  L   W IP MP  + + EGWTKYD   N F KV  P+E ++IFD+E +        +AV +G+  WYSW S  L+     +   +  D+LI L+ N D++  +C++GHFVS+DRAR+ +EY  + + TRF+DTMSM IAI GMT SL++  K S                               E  KW T  S N L+DVY  YFPN      KDKR  F+ G+  D++N+FQALM YCA DV+MTA+IFQKL+  ++ RFPH +   GMLE+ SLYLP N+    +I +++  + ++    ++I+++ A     +  K+  Y  DPWLWDL W+       P+W++ L+ K +++N+  P L+TS   IAVK+L+L+WDGLPL+YDKK KWGVL P C +P
Sbjct:  100 LQKAAETLNDPYMALLKGL-DDWKIPQMPTMWSFQEGWTKYDTINNKFYKVSVPEENLLIFDVETLPKYTQRAVMAVAVGKSYWYSWTSKYLLDGICKDDSEICKDDLIPLYSNDDKSKPKCIVGHFVSFDRARIRDEYCIKGTGTRFIDTMSMQIAIRGMT-SLQRSLKISFNNNNTENRIWKLYFSNSSKNGMNNSPEDIEESDKWLTEASLNSLVDVYQYYFPNCNLSSLKDKRETFIKGTIDDIVNDFQALMTYCATDVIMTAKIFQKLWTDYRVRFPHPASFTGMLEMGSLYLPVNSNLNTYINRASTTYESMIKKEKEILMELAQKS--LASKEKEYINDPWLWDLDWSTTKKSSFPKWFRVLVSKNENSNTFNPDLITSQKSIAVKMLKLKWDGLPLHYDKKNKWGVLIPGCYLP 517

HSP 2 Score: 135.191 bits (339), Expect = 5.710e-32
Identity = 105/352 (29.83%), Postives = 176/352 (50.00%), Query Frame = 2

Query: 1694 RKFNQMIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTN-QIGVEYKSMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVXXXXXXXXXXXXXXXYSNLANITNIDKNIFRRLALILIYG-GNKEDIVHFLWKNVSYNXXXXXXXXXXXXXXXXXXXXXXXXXNGVLSDFFNVMYNEIKSKDLKTPFLSSKFSKPL---IISGNRELMQC--FLKSSVSDYICCLIVYAKALIVEMKLNSRLSICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRFLDSVDIDECWRMNPMNDFCSETGR-GIYYNYGIKPGFSLH 2725
            R  +Q +V+ ++ +  NE AIIP VI      R+   +LW      TN ++G E K+M+  P ++V VG  + +   WI  +  DS+ G  G + FG  VL     +        +S  + +  I +N  + L    +YG G K      L  N      +A         + KGK+ +  W +G+ S+ F+ +    KS +  TP L+++ S+ L   +++      +C   ++SS  DY+ CL+ + K LI    +N+RL IC  +EIR+LC E D+Y++A  L  A+  T+  F+  L+L ++P    F   +DID C R +P +D  + + + G+  NY I+ G SL+
Sbjct:  727 RVQSQFMVRTSKEN--NESAIIPQVIVAGTVTRRSVERLWLTATNSTNDRVGSELKAMVQTPTNWVMVGADVDSQEQWIAAVLGDSVTGIHGGTPFGWMVLQGSKVDGTDL----HSKTSKMIGISRNAAKVLNYSRMYGAGIKSSTDTLLKYNPELKPQEAFNKIKDLMKQTKGKRSQGKWVDGIESEVFSKLEEIAKSDEPSTPVLNARLSQALEKRVVNEKFMTSKCNWVVQSSGVDYLHCLLTFTKHLIQLYNVNARLCICIHDEIRYLCEEKDKYRLALILQIANLYTRSVFSMKLNLFDLPQSIAFFSEIDIDYCLRKSPTDDCITPSNQNGLLNNYNIQKGESLN 1072

The following BLAST results are available for this feature:

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Celegans
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Fly
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Zebrafish
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Cavefish
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Sea Lamprey
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Yeast
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Nematostella
BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
BLAST of DNA polymerase subunit gamma-1 vs. Planmine SMEST

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
POLG	6.459e-59	33.33	DNA polymerase gamma, catalytic subunit [Source:HG...	[more]
POLG	1.234e-58	33.98	DNA polymerase gamma, catalytic subunit [Source:HG...	[more]
POLG	1.814e-58	33.33	DNA polymerase gamma, catalytic subunit [Source:HG...	[more]
POLG	1.814e-58	33.33	DNA polymerase gamma, catalytic subunit [Source:HG...	[more]
POLG	1.938e-54	32.19	DNA polymerase gamma, catalytic subunit [Source:HG...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1


Match Name	E-value	Identity	Description
polg-1	1.888e-41	33.76	POLG (Mitochondrial DNA POLymerase Gamma) [Source...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1


Match Name	E-value	Identity	Description
tam	1.965e-68	30.35	gene:FBgn0004406 transcript:FBtr0080571	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
polg	1.584e-62	35.20	polymerase (DNA directed), gamma [Source:ZFIN;Acc:...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
tpst1	1.701e-64	37.26	tyrosylprotein sulfotransferase 1 [Source:Xenbase;...	[more]
tpst1	1.326e-63	36.70	tyrosylprotein sulfotransferase 1 [Source:Xenbase;...	[more]
tpst1	1.519e-63	36.70	tyrosylprotein sulfotransferase 1 [Source:Xenbase;...	[more]
tpst1	1.604e-63	36.70	tyrosylprotein sulfotransferase 1 [Source:Xenbase;...	[more]
tpst1	1.894e-63	36.70	tyrosylprotein sulfotransferase 1 [Source:Xenbase;...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Polg	7.803e-65	33.69	polymerase (DNA directed), gamma [Source:MGI Symbo...	[more]
Polg	5.778e-61	33.69	polymerase (DNA directed), gamma [Source:MGI Symbo...	[more]
Polg	4.305e-9	34.88	polymerase (DNA directed), gamma [Source:MGI Symbo...	[more]
Polg	5.541e-9	28.43	polymerase (DNA directed), gamma [Source:MGI Symbo...	[more]
Polg	6.641e-7	43.10	polymerase (DNA directed), gamma [Source:MGI Symbo...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q27607\|DPOG1_DROME	1.970e-67	30.35	DNA polymerase subunit gamma-1, mitochondrial OS=D...	[more]
sp\|Q12704\|DPOG_SCHPO	3.751e-64	27.31	DNA polymerase gamma OS=Schizosaccharomyces pombe ...	[more]
sp\|Q91684\|DPOG1_XENLA	1.738e-63	35.07	DNA polymerase subunit gamma-1 OS=Xenopus laevis O...	[more]
sp\|Q01941\|DPOG_PICPA	4.784e-63	29.45	DNA polymerase gamma OS=Komagataella pastoris OX=4...	[more]
sp\|Q9Y767\|DPOG_NEUCR	1.022e-59	25.13	DNA polymerase gamma, mitochondrial OS=Neurospora ...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4V3SFV5	5.048e-95	40.00	POLAc domain-containing protein OS=Opisthorchis fe...	[more]
A0A4S2M0Z6	6.185e-94	40.32	POLAc domain-containing protein OS=Opisthorchis fe...	[more]
A0A4S2M109	4.100e-93	40.32	POLAc domain-containing protein OS=Opisthorchis fe...	[more]
A0A419PZG4	1.611e-92	40.82	DNA polymerase subunit gamma-like protein (Fragmen...	[more]
A0A0V0J3Z5	5.964e-91	40.45	DNA polymerase subunit gamma-1 (Fragment) OS=Schis...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
polg	1.176e-60	35.47	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.275e-60	35.47	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.303e-60	35.47	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.303e-60	35.47	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
polg	1.254e-57	34.58	polymerase (DNA directed), gamma [Source:ZFIN;Acc:...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
MIP1	4.910e-43	30.34	Mitochondrial DNA polymerase gamma; single subunit...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of DNA polymerase subunit gamma-1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
polg	1.297e-64	32.19	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.815e-64	32.19	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.997e-64	32.19	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.997e-64	32.19	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]
polg	1.251e-51	30.43	DNA polymerase gamma, catalytic subunit [Source:NC...	[more]

BLAST of DNA polymerase subunit gamma-1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000050769.1	0.000e+0	99.34	SMESG000050769.1	[more]
SMESG000050769.1	0.000e+0	98.46	SMESG000050769.1	[more]
SMESG000050799.1	1.271e-94	41.47	SMESG000050799.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence
protein sequence

transcript sequence

>SMED30011285 ID=SMED30011285|Name=DNA polymerase subunit gamma-1|organism=Schmidtea mediterranea sexual|type=transcript|length=2880bp
CTTTACCAAAAATTATTTCTCAACACTTTATGTAATGTACATCTTACATA
ATTTTTGCTAAATCGTTTTAAACTGGTTGGTTAAATTATTATTTGAAAAA
ATATATTATGCTCCTAAATCGCAGGTTTATTACAAATTTTTTCTTTTATA
AAGATTTTCAATTATTGTACTCTACTGATATTCAATTTAGTGTGCATAAA
TATTCTCGGTTTGCTGTTTTATCTAAATATTACAATACAGAAATAAACCG
TCATAAAAATGAAGTAGAAAGATTAAATTATTTAGCAAATGAATTATGCG
AGCCTTATGAAATTTTATTAAATTCCTTAACTCATAAATGGACTATTCCT
CCAATGCCTGAGAAATTTTGTTATTGTGAAGGCTGGACCAAATATGACAA
GAAAGCAAATTCTTTTTCGAAAGTTCCATTTCCTGACGAAAAGGTTATGA
TATTTGACATTGAAGTAATTGTGAATGAAGGCAATTGGCCATCAATTGCT
GTGTGTTTGGGGCAAGATTCTTGGTATAGTTGGGTTTCAAATCGTCTAAT
TAAATCGAACAATACGAACAGAGATATTGTTTATTCTGATGAATTAATAG
AACTTTTTGATAATAAAGATAGAAATATTTTCCGTTGTGTAATTGGACAT
TTCGTTTCTTACGATAGAGCAAGAGTTGCAAATGAATATGTTAATCAGAG
TTCTAACACGAGATTTGTTGATACCATGTCAATGCACATTGCCATATCGG
GGATGACCGCGAGTTTACGACAAAGATACAAAACATCTGAAAAGTTTAAG
TGGAAAACAGTAACTAGTGGAAATGGTCTGTTAGACGTATATTCTCTTTA
TTTCCCAAATAAAGAACCACCACAAAATAAAGACAAAAGAAATATTTTTG
TAACAGGATCTTCTACTGATGTTATAAATAATTTCCAAGCTCTAATGAAA
TATTGTGCAAATGACGTTCTAATGACTGCAGAAATTTTTCAAAAACTTTT
CCCTATATTTCAGAAAAGATTTCCTCATAAATCTGTGCTTTATGGCATGC
TAGAATTGAACTCTCTATACTTACCGACGAATAATAAATGGTTTCAGTTC
ATAGAACAATCAAATAAGGATTTCTACACCATTGGTTCAAATCATCAAAA
AATTATTCTTAAGAAAGCCGCTAACATAGGCTTAGTACTCGGAAAGGATG
ACAATTACAAAAAGGATCCATGGCTATGGGATTTAAAATGGACTAAGCCT
TTACCTCGTTGGTACAAAGATTTAATTCCCAAGGATAGCGCAAACAGCTG
TGAACCGTCATTACTCACTAGTAGTATGGGCATAGCTGTTAAATTGCTAA
GATTGCGATGGGATGGATTGCCTTTGTATTATGATAAGAAATACAAATGG
GGTGTTTTAAAACCATGCAAAATGCCAAAAAGTGATATTGATATCATAAT
TACGGTGCCTAAAAATTTCCCTAAAAGAGAATATTTTAAAGATCACGATC
AATCCCATGACTTAGAGACAAATACTTTTATTTTCAAACCAATGGTTCAT
AAAGATGGTTTTGACAAATATGTCAGTCGAGTTCTTTCAGATGATTCAAT
TTCCAACTTGGCTCTCAATAGATTAACTTCGAATTTAGATGTCGGTAAAG
AATTTTTACAATCCATTGGAAGTTGTCTATTTTGGAAATCATCAGGAAAT
TTAATCAAATGATTGTTAAATTGAATCGAAACTCAACAAGCAATGAAATG
GCAATAATTCCCCCAGTTATTCCAATTAGCAATCCCTATCGAAAAATTGA
TGCGAAACTGTGGTTTGATAATTTCTATTTGACCAATCAAATCGGTGTAG
AATACAAATCCATGATAATGGCACCTCAGCATTACGTATTTGTTGGACAT
ACATTGCATAATATAGTTGATTGGATAATTGGTATTTGTTGCGATTCAAT
TCACGGTGAACTTGGTGCGTCTCAGTTTGGTAAAGAAGTATTAAATGCTG
GTTTAAACAATCTCTTGGGATTCAATACGACTCTATATTCTAATCTCGCA
AATATTACTAATATAGACAAAAATATTTTTCGTCGTTTAGCTTTAATTTT
AATCTATGGTGGTAACAAAGAAGATATAGTGCATTTTTTATGGAAAAATG
TCTCATACAATATAATTGATGCGAAAAAATATGCTGACAAATATTATTTG
AAATTAAAAGGTAAAAAGATTGAGAAAATTTGGAAAAATGGAGTTCTATC
AGATTTCTTTAACGTTATGTATAACGAAATTAAATCTAAAGATTTGAAAA
CTCCATTTTTGAGTTCCAAATTCTCTAAACCCCTTATCATATCGGGAAAT
AGAGAATTAATGCAGTGTTTTTTGAAATCAAGCGTTTCAGATTATATCTG
TTGCCTTATTGTATACGCTAAAGCTTTAATAGTTGAAATGAAGTTAAATT
CGAGATTAAGTATCTGCAATAAAAACGAAATCAGATTTCTTTGCCATGAG
AATGATAGGTACAAAATGGCTTACGCTTTACATTGCGCTGATTCTGCTAC
TAAAATTGCATTTGCTTCATTTTTATCTCTTAGAAATGTGCCTTCAGAAT
TTAGATTTCTAGATAGTGTAGATATTGACGAGTGCTGGCGAATGAATCCC
ATGAATGATTTCTGCTCGGAAACAGGTCGCGGCATTTATTATAATTATGG
AATTAAGCCTGGGTTTTCACTCCATTTTGATGATTTGGCAGCCCAGGTTA
AGATTTAATATTTTTCAGTATATTGCATTTTTATTTTTGAGTGGATTTTA
TTAATAAATATTTTTTATTTTGTTTTAATCAAACTATTTACAATTTTCTT
GATATTAAGATCAAGACAACATTTTTCCAC

protein sequence of SMED30011285-orf-1

>SMED30011285-orf-1 ID=SMED30011285-orf-1|Name=SMED30011285-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=350bp
MIVKLNRNSTSNEMAIIPPVIPISNPYRKIDAKLWFDNFYLTNQIGVEYK
SMIMAPQHYVFVGHTLHNIVDWIIGICCDSIHGELGASQFGKEVLNAGLN
NLLGFNTTLYSNLANITNIDKNIFRRLALILIYGGNKEDIVHFLWKNVSY
NIIDAKKYADKYYLKLKGKKIEKIWKNGVLSDFFNVMYNEIKSKDLKTPF
LSSKFSKPLIISGNRELMQCFLKSSVSDYICCLIVYAKALIVEMKLNSRL
SICNKNEIRFLCHENDRYKMAYALHCADSATKIAFASFLSLRNVPSEFRF
LDSVDIDECWRMNPMNDFCSETGRGIYYNYGIKPGFSLHFDDLAAQVKI*

protein sequence of SMED30011285-orf-2

>SMED30011285-orf-2 ID=SMED30011285-orf-2|Name=SMED30011285-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=535bp
MLLNRRFITNFFFYKDFQLLYSTDIQFSVHKYSRFAVLSKYYNTEINRHK
NEVERLNYLANELCEPYEILLNSLTHKWTIPPMPEKFCYCEGWTKYDKKA
NSFSKVPFPDEKVMIFDIEVIVNEGNWPSIAVCLGQDSWYSWVSNRLIKS
NNTNRDIVYSDELIELFDNKDRNIFRCVIGHFVSYDRARVANEYVNQSSN
TRFVDTMSMHIAISGMTASLRQRYKTSEKFKWKTVTSGNGLLDVYSLYFP
NKEPPQNKDKRNIFVTGSSTDVINNFQALMKYCANDVLMTAEIFQKLFPI
FQKRFPHKSVLYGMLELNSLYLPTNNKWFQFIEQSNKDFYTIGSNHQKII
LKKAANIGLVLGKDDNYKKDPWLWDLKWTKPLPRWYKDLIPKDSANSCEP
SLLTSSMGIAVKLLRLRWDGLPLYYDKKYKWGVLKPCKMPKSDIDIIITV
PKNFPKREYFKDHDQSHDLETNTFIFKPMVHKDGFDKYVSRVLSDDSISN
LALNRLTSNLDVGKEFLQSIGSCLFWKSSGNLIK*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000020	protonephridia
PLANA:0000070	intestinal phagocyte
PLANA:0000099	neuron

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **molecular function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0003887	DNA-directed DNA polymerase activity

Vocabulary: **cellular component**
Term	Definition
GO:0005760	gamma DNA polymerase complex

Vocabulary: **biological process**
Term	Definition
GO:0006260	DNA replication
GO:0071897	DNA biosynthetic process

Main menu

DNA polymerase subunit gamma-1

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 18

Owlery

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