SJCHGC03511 protein

Overview
NameSJCHGC03511 protein
Smed IDSMED30011284
Length (bp)1475
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SJCHGC03511 protein (SMED30011284) t-SNE clustered cells

Violin plots show distribution of expression levels for SJCHGC03511 protein (SMED30011284) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011284

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30011284SMESG000051494.1 SmedASXL_003693SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30011284SMESG000051494.1 dd_Smed_v4_27580_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011284SMESG000051494.1 Contig40399newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011284SMESG000051494.1 Contig40399uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Human
Match: NOL4L (nucleolar protein 4 like [Source:HGNC Symbol;Acc:HGNC:16106])

HSP 1 Score: 74.3294 bits (181), Expect = 1.044e-13
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  + PI 
Sbjct:  185 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQDEPIA 301
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Human
Match: NOL4L (nucleolar protein 4 like [Source:HGNC Symbol;Acc:HGNC:16106])

HSP 1 Score: 73.9442 bits (180), Expect = 1.514e-13
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  + PI 
Sbjct:  185 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQDEPIA 301
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Human
Match: NOL4L (nucleolar protein 4 like [Source:HGNC Symbol;Acc:HGNC:16106])

HSP 1 Score: 73.559 bits (179), Expect = 3.821e-13
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  + PI 
Sbjct:  429 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQDEPIA 545
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Human
Match: NOL4 (nucleolar protein 4 [Source:HGNC Symbol;Acc:HGNC:7870])

HSP 1 Score: 65.855 bits (159), Expect = 4.013e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR   K +G  + +   ++L+S 
Sbjct:  121 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR--MKRSGFEMSRPIPSHLTSA 202
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Human
Match: NOL4 (nucleolar protein 4 [Source:HGNC Symbol;Acc:HGNC:7870])

HSP 1 Score: 66.6254 bits (161), Expect = 5.284e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR   K +G  + +   ++L+S 
Sbjct:  332 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR--MKRSGFEMSRPIPSHLTSA 413
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Fly
Match: CG46301 (gene:FBgn0283651 transcript:FBtr0445729)

HSP 1 Score: 70.0922 bits (170), Expect = 1.964e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNG-RILMKNTAAYLSS 882
            ER  A+N+ +R  +DE LDR +  S QPKE +  I     RQFPE+ + + R ++R+YLK+CRRN K  +G     + T A+L+S
Sbjct:  188 ERLKAFNMFVRLFVDENLDRIIPISKQPKEKIQAIIDSCARQFPEFSD-RSRKRIRTYLKSCRRNKKTRDGWENTTRPTPAHLTS 271
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Fly
Match: CG46301 (gene:FBgn0283651 transcript:FBtr0445730)

HSP 1 Score: 70.0922 bits (170), Expect = 3.059e-12
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNG-RILMKNTAAYLSS 882
            ER  A+N+ +R  +DE LDR +  S QPKE +  I     RQFPE+ + + R ++R+YLK+CRRN K  +G     + T A+L+S
Sbjct:  789 ERLKAFNMFVRLFVDENLDRIIPISKQPKEKIQAIIDSCARQFPEFSD-RSRKRIRTYLKSCRRNKKTRDGWENTTRPTPAHLTS 872
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Zebrafish
Match: nol4la (nucleolar protein 4-like a [Source:ZFIN;Acc:ZDB-GENE-081105-118])

HSP 1 Score: 67.3958 bits (163), Expect = 1.917e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR  K   G    + T  +L+S 
Sbjct:  446 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RSRKRIRTYLKSCRRMKK---GGFESRPTPPHLTSA 526
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Zebrafish
Match: nol4lb (nucleolar protein 4-like b [Source:ZFIN;Acc:ZDB-GENE-070112-1702])

HSP 1 Score: 65.855 bits (159), Expect = 3.907e-11
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPI 1017
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG +  + T  +L+S     ++     +E       +K ++R ++     + Q+H E P+
Sbjct:  208 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNG-METRPTPPHLTSAMAENILAAACESES------RKAAKRMRM----DVYQAH-EEPV 321
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Xenopus
Match: nol4l (nucleolar protein 4-like [Source:NCBI gene;Acc:100494288])

HSP 1 Score: 71.633 bits (174), Expect = 7.126e-13
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKL 972
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L
Sbjct:  173 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMARPTPPHLTSAMAENILAAACESES------RKAAKRMRL 277
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Xenopus
Match: nol4l (nucleolar protein 4-like [Source:NCBI gene;Acc:100494288])

HSP 1 Score: 71.2478 bits (173), Expect = 9.929e-13
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKL 972
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L
Sbjct:  177 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMARPTPPHLTSAMAENILAAACESES------RKAAKRMRL 281
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Xenopus
Match: NOL4 (nucleolar protein 4 [Source:NCBI gene;Acc:100494971])

HSP 1 Score: 66.6254 bits (161), Expect = 5.213e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR   K +G  + +   ++L+S 
Sbjct:  379 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR--MKRSGFEMSRPIPSHLTSA 460
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Mouse
Match: Nol4l (nucleolar protein 4-like [Source:MGI Symbol;Acc:MGI:1918765])

HSP 1 Score: 75.0998 bits (183), Expect = 4.390e-14
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  E PI 
Sbjct:  185 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQEEPIA 301
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Mouse
Match: Nol4l (nucleolar protein 4-like [Source:MGI Symbol;Acc:MGI:1918765])

HSP 1 Score: 74.7146 bits (182), Expect = 9.305e-14
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  E PI 
Sbjct:  429 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQEEPIA 545
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Mouse
Match: Nol4 (nucleolar protein 4 [Source:MGI Symbol;Acc:MGI:2441684])

HSP 1 Score: 66.2402 bits (160), Expect = 2.847e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRR 822
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR
Sbjct:  188 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR 250
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Mouse
Match: Nol4 (nucleolar protein 4 [Source:MGI Symbol;Acc:MGI:2441684])

HSP 1 Score: 66.6254 bits (161), Expect = 3.209e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR   K +G  + +   ++L+S 
Sbjct:  333 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR--MKRSGFEMSRPIPSHLTSA 414
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Mouse
Match: Nol4 (nucleolar protein 4 [Source:MGI Symbol;Acc:MGI:2441684])

HSP 1 Score: 66.6254 bits (161), Expect = 3.412e-11
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSS 882
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR   K +G  + +   ++L+S
Sbjct:  406 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR--MKRSGFEMSRPIPSHLTS 486
[Close]
BLAST of SJCHGC03511 protein vs. UniProt/SwissProt
Match: sp|Q6DIB4|NOL4L_MOUSE (Nucleolar protein 4-like OS=Mus musculus OX=10090 GN=Nol4l PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.997e-13
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  E PI 
Sbjct:  244 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQEEPIA 360
[Close]
BLAST of SJCHGC03511 protein vs. UniProt/SwissProt
Match: sp|Q96MY1|NOL4L_HUMAN (Nucleolar protein 4-like OS=Homo sapiens OX=9606 GN=NOL4L PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.272e-13
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  + PI 
Sbjct:  185 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQDEPIA 301
[Close]
BLAST of SJCHGC03511 protein vs. UniProt/SwissProt
Match: sp|Q5RFT9|NOL4L_PONAB (Nucleolar protein 4-like OS=Pongo abelii OX=9601 GN=NOL4L PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.863e-12
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIV 1020
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+Y K+CRR   K NG  + + T  +L+S     ++     +E       +K ++R +L    +I QS  + PI 
Sbjct:  185 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYHKSCRR--MKKNGMEMTRPTPPHLTSAMAENILAAACESE------TRKAAKRMRL----EIYQSSQDEPIA 301
[Close]
BLAST of SJCHGC03511 protein vs. UniProt/SwissProt
Match: sp|O94818|NOL4_HUMAN (Nucleolar protein 4 OS=Homo sapiens OX=9606 GN=NOL4 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 2.585e-10
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPEY+E + R ++R+YLK+CRR   K +G  + +   ++L+S 
Sbjct:  406 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIDSCRRQFPEYQE-RARKRIRTYLKSCRR--MKRSGFEMSRPIPSHLTSA 487
[Close]
BLAST of SJCHGC03511 protein vs. TrEMBL
Match: A0A2H1CLH4 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_002777 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.766e-27
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQN 981
            EREI YNLLLR+++D  LDR + +SHQPK +L ++ TIL R FPE+ +S HR +V +YLKACRRN+KK NG   ++ +A YLS+G   RL  QIY  EK  ++ +     R KL +N
Sbjct:   91 EREITYNLLLRKLVDAFLDRTITYSHQPKNVLVVLQTILARNFPEFGDSFHRERVCAYLKACRRNAKKKNGEPFVRISARYLSAGMATRLAEQIYAKEKVHMESVV----RHKLPEN 203
[Close]
BLAST of SJCHGC03511 protein vs. TrEMBL
Match: A0A504YY18 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_01739 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.860e-27
Identity = 59/117 (50.43%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQN 981
            EREI YNLLLR+++D  LDR + +SHQPK +L ++ TIL R FPE+ +S HR +V +YLKACRRN+KK NG   ++ +A YLS+G   RL  QIY  EK  ++ +     R KL +N
Sbjct:   91 EREITYNLLLRKLVDAFLDRTITYSHQPKNVLVVLQTILARNFPEFGDSFHRERVCAYLKACRRNAKKKNGEPFVRISARYLSAGMATRLAEQIYAKEKVHMESVV----RHKLPEN 203
[Close]
BLAST of SJCHGC03511 protein vs. TrEMBL
Match: A0A5J4NXN4 (Uncharacterized protein (Fragment) OS=Paragonimus westermani OX=34504 GN=DEA37_0001126 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.632e-26
Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEK 927
            EREI YNLLLR+++DE +DR V FSHQPK  L+ + ++LVR FPE+ ES HR ++ +YLKACRRN+KK +G   ++ +A YLS+G   R+  QIY +EK
Sbjct:  134 EREITYNLLLRKLVDEFMDRTVTFSHQPKFALSSLQSVLVRNFPEFGESFHRERICAYLKACRRNAKKKHGEPCVRISARYLSAGIATRIAEQIYEHEK 232
[Close]
BLAST of SJCHGC03511 protein vs. TrEMBL
Match: G4VJJ7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_155860 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.684e-26
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETI-DIIKKESERFKLTQNGKISQSH 1002
            EREI YNLLLRR++DE LDR + +SHQPK +L ++  +L R FPE+ +S HR ++ +YLKACRRN+K+ NG   ++ +A YLSSG  + L   IY  E   + ++I  + ER  + Q   +S  H
Sbjct:   99 EREITYNLLLRRLVDEYLDRKITYSHQPKYILGVLKCVLERNFPEFSDSFHRERICAYLKACRRNAKRKNGEPYVRMSARYLSSGKASSLAETIYLKEHSYLNNMISVKCERQLVAQAAPMSGYH 223
[Close]
BLAST of SJCHGC03511 protein vs. TrEMBL
Match: A0A183KDN7 (Uncharacterized protein OS=Schistosoma curassoni OX=6186 GN=SCUD_LOCUS13129 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.730e-25
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIVS 1023
            EREI YNLLLRR++DE LDR + +SHQPK +L+++  +L R FPE+ +S HR ++ +YLKACRRN+K+ NG   ++ +A YLSSG  + L   IY  E+  ++ +   +E  KL     I Q+   AP+V 
Sbjct:   99 EREITYNLLLRRLVDEYLDRKITYSHQPKYILDILKCVLERNFPEFSDSFHRERICAYLKACRRNAKRRNGEPYVRMSARYLSSGKASSLAETIYLKEQSYLNNMISNTENNKL-----IGQA---APMVG 221
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Cavefish
Match: nol4la (nucleolar protein 4-like [Source:NCBI gene;Acc:103039117])

HSP 1 Score: 67.781 bits (164), Expect = 1.512e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR  K   G    + T  +L+S 
Sbjct:  464 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRRMKK---GGFETRPTPPHLTSA 544
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Cavefish
Match: nol4lb (nucleolar protein 4 like [Source:NCBI gene;Acc:103032141])

HSP 1 Score: 66.2402 bits (160), Expect = 3.935e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG +  + T  +L+S 
Sbjct:  459 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNG-METRPTPPHLTSA 539
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Medaka
Match: nol4la (nucleolar protein 4-like [Source:NCBI gene;Acc:101174833])

HSP 1 Score: 68.5514 bits (166), Expect = 7.006e-12
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR  K   G   ++ T  +L+S 
Sbjct:  442 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RSRKRIRTYLKSCRRMKK---GGFEIRPTPPHLTSA 522
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Medaka
Match: nol4lb (nucleolar protein 4-like [Source:NCBI gene;Acc:101169180])

HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG +  + T  +L+S 
Sbjct:  242 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNG-METRPTPPHLTSA 322
[Close]
BLAST of SJCHGC03511 protein vs. Ensembl Medaka
Match: nol4lb (nucleolar protein 4-like [Source:NCBI gene;Acc:101169180])

HSP 1 Score: 66.6254 bits (161), Expect = 2.099e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSG 885
            ER  A+N+ +R  +DE LDR V  S QPKE +  I     RQFPE++E + R ++R+YLK+CRR   K NG +  + T  +L+S 
Sbjct:  242 ERLKAFNMFVRLFVDENLDRMVPISKQPKEKIQAIIESCSRQFPEFQE-RARKRIRTYLKSCRR--MKKNG-METRPTPPHLTSA 322
[Close]
BLAST of SJCHGC03511 protein vs. Planmine SMEST
Match: SMESG000051494.1 (SMESG000051494.1)

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 443/444 (99.77%), Postives = 443/444 (99.77%), Query Frame = 1 
Query:   97 METTFDDFTAYVQPDETPINDVPMYSKTASRRTVAKYLKRKNAISKLIAQDQNPIETIKLEKLENSDNVXXXXXXXXXXNADMDTGKHGFQMPYFNQDISXXXXXXXXXXXXLIQDNKENNSSISEMLKCVLESNKGFVDVLEKNGEFSNPWLTNGIPFDYCXXXXXXXXXXXXXDKQEREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIVSSMSVXXXXXXXXXXXXXXXXXXXVSLYSIQSNLKPNAPICTNKXXXXXXXXXXXXXXXXXXXXXVVNFSEPNKKDSIEQNLSEDVIKNVSEIVRNIVNSDCNFNLNDLINQLNSTASFLERFAKTLEKSINNFGK 1428
            METTFDDFTAYVQPDETPINDVPMYSKTASRRTVAKYLKRKNAISKLIAQDQNPIETIKLEKLENSDNVASTASAITTSNADMDTGKHGFQMPYFNQDISPFIFPVNFPNNNLIQDNKENNSSISEMLKCVLESNKGFVDVLEKNGEFSNPWLTNGIPFDYCQAQISSSSLSASIDKQEREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIVSSMSVLNNQQQILNITNTLPTLLPVSLYSIQSNLKPNAPICTNKNISNMNSLPLLLPL NTNNNSVVNFSEPNKKDSIEQNLSEDVIKNVSEIVRNIVNSDCNFNLNDLINQLNSTASFLERFAKTLEKSINNFGK
Sbjct:    1 METTFDDFTAYVQPDETPINDVPMYSKTASRRTVAKYLKRKNAISKLIAQDQNPIETIKLEKLENSDNVASTASAITTSNADMDTGKHGFQMPYFNQDISPFIFPVNFPNNNLIQDNKENNSSISEMLKCVLESNKGFVDVLEKNGEFSNPWLTNGIPFDYCQAQISSSSLSASIDKQEREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQSHLEAPIVSSMSVLNNQQQILNITNTLPTLLPVSLYSIQSNLKPNAPICTNKNISNMNSLPLLLPLHNTNNNSVVNFSEPNKKDSIEQNLSEDVIKNVSEIVRNIVNSDCNFNLNDLINQLNSTASFLERFAKTLEKSINNFGK 444
[Close]
BLAST of SJCHGC03511 protein vs. Planmine SMEST
Match: SMESG000009276.1 (SMESG000009276.1)

HSP 1 Score: 100.138 bits (248), Expect = 1.490e-22
Identity = 45/119 (37.82%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGK 987
            + ++AYN+ +RR++D+ LDR V F  QPK++++ +  I    FP  ++ +HR K+R YLKACRRNSKK+NG++ MK+T +++ S        + +    E +  I KE +  KL + G+
Sbjct:  118 DTDMAYNIFVRRVVDDTLDRTVTFCEQPKDIISSLEDICSTAFPTLDKGRHRIKIRGYLKACRRNSKKHNGKVSMKDTPSHMCS-------EKAFAMANEALSRINKELQILKLAKLGR 229
[Close]
BLAST of SJCHGC03511 protein vs. Planmine SMEST
Match: SMESG000009276.1 (SMESG000009276.1)

HSP 1 Score: 100.138 bits (248), Expect = 1.547e-22
Identity = 45/119 (37.82%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:  631 EREIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGK 987
            + ++AYN+ +RR++D+ LDR V F  QPK++++ +  I    FP  ++ +HR K+R YLKACRRNSKK+NG++ MK+T +++ S        + +    E +  I KE +  KL + G+
Sbjct:  127 DTDMAYNIFVRRVVDDTLDRTVTFCEQPKDIISSLEDICSTAFPTLDKGRHRIKIRGYLKACRRNSKKHNGKVSMKDTPSHMCS-------EKAFAMANEALSRINKELQILKLAKLGR 238
[Close]
BLAST of SJCHGC03511 protein vs. Planmine SMEST
Match: SMESG000007822.1 (SMESG000007822.1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.753e-21
Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:  637 EIAYNLLLRRIIDEALDRNVIFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGRILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGK--ISQSHLEAP 1014
            ++AYN+ +R++ID  LDR + F  QPK +++ +  I    F  +++S+HR K+R YLKACRRNSKK+NG++ MK+T +++ S        + Y    E    ++KE E   L + GK  I+Q  L  P
Sbjct:  367 DMAYNIFVRKLIDSTLDRTITFCEQPKLVISSLENICAEAFQSFDKSRHRIKIRGYLKACRRNSKKHNGKVSMKDTPSHMCSD-------KAYTIANEAFQKVEKEIENLILAKPGKSDINQFFLSKP 487
The following BLAST results are available for this feature:
BLAST of SJCHGC03511 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NOL4L1.044e-1335.38nucleolar protein 4 like [Source:HGNC Symbol;Acc:H... [more]
NOL4L1.514e-1335.38nucleolar protein 4 like [Source:HGNC Symbol;Acc:H... [more]
NOL4L3.821e-1335.38nucleolar protein 4 like [Source:HGNC Symbol;Acc:H... [more]
NOL44.013e-1142.35nucleolar protein 4 [Source:HGNC Symbol;Acc:HGNC:7... [more]
NOL45.284e-1142.35nucleolar protein 4 [Source:HGNC Symbol;Acc:HGNC:7... [more]
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BLAST of SJCHGC03511 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC03511 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG463011.964e-1242.35gene:FBgn0283651 transcript:FBtr0445729[more]
CG463013.059e-1242.35gene:FBgn0283651 transcript:FBtr0445730[more]
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BLAST of SJCHGC03511 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
nol4la1.917e-1142.35nucleolar protein 4-like a [Source:ZFIN;Acc:ZDB-GE... [more]
nol4lb3.907e-1134.11nucleolar protein 4-like b [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of SJCHGC03511 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
nol4l7.126e-1335.96nucleolar protein 4-like [Source:NCBI gene;Acc:100... [more]
nol4l9.929e-1335.96nucleolar protein 4-like [Source:NCBI gene;Acc:100... [more]
NOL45.213e-1142.35nucleolar protein 4 [Source:NCBI gene;Acc:10049497... [more]
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BLAST of SJCHGC03511 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Nol4l4.390e-1436.15nucleolar protein 4-like [Source:MGI Symbol;Acc:MG... [more]
Nol4l9.305e-1436.15nucleolar protein 4-like [Source:MGI Symbol;Acc:MG... [more]
Nol42.847e-1150.00nucleolar protein 4 [Source:MGI Symbol;Acc:MGI:244... [more]
Nol43.209e-1142.35nucleolar protein 4 [Source:MGI Symbol;Acc:MGI:244... [more]
Nol43.412e-1142.86nucleolar protein 4 [Source:MGI Symbol;Acc:MGI:244... [more]
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BLAST of SJCHGC03511 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q6DIB4|NOL4L_MOUSE2.997e-1336.15Nucleolar protein 4-like OS=Mus musculus OX=10090 ... [more]
sp|Q96MY1|NOL4L_HUMAN7.272e-1335.38Nucleolar protein 4-like OS=Homo sapiens OX=9606 G... [more]
sp|Q5RFT9|NOL4L_PONAB5.863e-1234.62Nucleolar protein 4-like OS=Pongo abelii OX=9601 G... [more]
sp|O94818|NOL4_HUMAN2.585e-1042.35Nucleolar protein 4 OS=Homo sapiens OX=9606 GN=NOL... [more]
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BLAST of SJCHGC03511 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2H1CLH41.766e-2750.43Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A504YY181.860e-2750.43Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A5J4NXN41.632e-2654.55Uncharacterized protein (Fragment) OS=Paragonimus ... [more]
G4VJJ75.684e-2645.60Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A183KDN72.730e-2545.04Uncharacterized protein OS=Schistosoma curassoni O... [more]
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BLAST of SJCHGC03511 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
nol4la1.512e-1142.35nucleolar protein 4-like [Source:NCBI gene;Acc:103... [more]
nol4lb3.935e-1143.53nucleolar protein 4 like [Source:NCBI gene;Acc:103... [more]
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BLAST of SJCHGC03511 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC03511 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC03511 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC03511 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
nol4la7.006e-1242.35nucleolar protein 4-like [Source:NCBI gene;Acc:101... [more]
nol4lb2.099e-1143.53nucleolar protein 4-like [Source:NCBI gene;Acc:101... [more]
nol4lb2.099e-1143.53nucleolar protein 4-like [Source:NCBI gene;Acc:101... [more]
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BLAST of SJCHGC03511 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000051494.10.000e+099.77SMESG000051494.1[more]
SMESG000009276.11.490e-2237.82SMESG000009276.1[more]
SMESG000009276.11.547e-2237.82SMESG000009276.1[more]
SMESG000007822.14.753e-2138.28SMESG000007822.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011284 ID=SMED30011284|Name=SJCHGC03511 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1475bp
GATGGGTCTGGGATTGATTGGATTGTTGGATCAATGAGCGATCTGTGGTC
CTTTAGTACTGGGACTTCATATTGACAATCAAATATTTCAATAAAAATGG
AGACGACATTTGATGATTTTACGGCCTACGTCCAGCCCGATGAAACCCCA
ATTAACGATGTTCCAATGTATTCCAAGACTGCTAGTCGAAGAACTGTGGC
CAAGTACTTGAAAAGAAAAAATGCAATTTCCAAACTGATTGCTCAGGACC
AAAACCCAATCGAAACAATCAAATTGGAAAAATTAGAAAACTCAGACAAC
GTAGCGTCGACAGCATCAGCAATTACTACGTCAAATGCGGATATGGATAC
TGGGAAACACGGATTCCAAATGCCATATTTTAATCAAGACATTTCCCCAT
TTATTTTCCCTGTAAATTTCCCGAATAATAATCTAATTCAGGATAACAAA
GAAAATAATAGCTCGATTTCTGAAATGCTGAAATGTGTCCTGGAAAGCAA
TAAAGGATTTGTTGATGTGTTAGAAAAGAACGGAGAATTCTCCAATCCGT
GGTTGACCAATGGGATTCCGTTTGACTATTGCCAGGCGCAGATCTCCAGC
TCGAGTTTGTCTGCTTCCATTGATAAACAAGAACGAGAAATCGCTTATAA
TCTTTTACTTCGAAGGATCATTGATGAGGCGCTTGACAGAAATGTTATAT
TTTCTCACCAACCAAAAGAACTGTTAAATTTAATTAATACAATTCTTGTC
CGACAATTTCCGGAATATGAAGAATCAAAGCACCGTAGTAAAGTGAGAAG
TTATTTAAAAGCTTGCCGAAGAAATTCAAAGAAAAACAATGGACGAATCC
TAATGAAAAATACGGCTGCATATTTGAGTTCTGGGCCTGGAAATCGTTTA
ATGCATCAAATATATAACAATGAAAAGGAAACGATTGATATTATTAAAAA
AGAATCTGAAAGATTTAAATTAACTCAAAATGGTAAGATTTCACAGAGCC
ATTTGGAAGCTCCAATCGTGTCCTCGATGTCAGTTTTGAATAATCAACAA
CAAATATTGAACATTACAAATACCCTTCCTACCTTATTGCCAGTGTCTCT
GTATTCAATTCAATCAAACCTGAAGCCCAATGCTCCAATCTGTACCAATA
AAAATATAAGCAACATGAATTCATTGCCCTTGCTTTTACCATTGCAAAAC
ACAAATAACAATTCCGTTGTAAATTTTTCTGAGCCAAATAAAAAAGACTC
AATCGAACAAAATTTATCGGAAGATGTCATCAAGAATGTTTCTGAAATTG
TGAGAAATATCGTCAATAGCGATTGTAATTTCAATCTCAACGACCTAATA
AATCAACTTAATTCAACCGCTAGTTTTTTGGAGAGGTTTGCCAAAACCTT
AGAAAAATCAATTAACAACTTTGGAAAATAGATAAATTTTTTGTATTATA
TTGGTGTTTGTCTGTTTTCATAAAT
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protein sequence of SMED30011284-orf-1

>SMED30011284-orf-1 ID=SMED30011284-orf-1|Name=SMED30011284-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=445bp
METTFDDFTAYVQPDETPINDVPMYSKTASRRTVAKYLKRKNAISKLIAQ
DQNPIETIKLEKLENSDNVASTASAITTSNADMDTGKHGFQMPYFNQDIS
PFIFPVNFPNNNLIQDNKENNSSISEMLKCVLESNKGFVDVLEKNGEFSN
PWLTNGIPFDYCQAQISSSSLSASIDKQEREIAYNLLLRRIIDEALDRNV
IFSHQPKELLNLINTILVRQFPEYEESKHRSKVRSYLKACRRNSKKNNGR
ILMKNTAAYLSSGPGNRLMHQIYNNEKETIDIIKKESERFKLTQNGKISQ
SHLEAPIVSSMSVLNNQQQILNITNTLPTLLPVSLYSIQSNLKPNAPICT
NKNISNMNSLPLLLPLQNTNNNSVVNFSEPNKKDSIEQNLSEDVIKNVSE
IVRNIVNSDCNFNLNDLINQLNSTASFLERFAKTLEKSINNFGK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000419prepharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR026747NOL4
IPR039788NOL4/NOL4L
Vocabulary: cellular component
TermDefinition
GO:0005730nucleolus
GO:0005654nucleoplasm
GO:0005829cytosol
Vocabulary: biological process
TermDefinition
GO:0008150biological_process
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026747Nucleolar protein 4PANTHERPTHR12449:SF17NUCLEOLAR PROTEIN 4coord: 178..270
IPR039788Nucleolar protein 4 familyPANTHERPTHR12449FAMILY NOT NAMEDcoord: 178..270