SMED30011283

Overview
NameSMED30011283
Smed IDSMED30011283
Length (bp)2623
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30011283 (SMED30011283) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011283 (SMED30011283) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30011283 (SMED30011283) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30011283 (SMED30011283) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011283

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30011283SMESG000032426.1 SMESG000032414.1 dd_Smed_v4_6793_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30011283SMESG000032426.1 SMESG000032414.1 dd_Smed_v4_6793_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011283SMESG000032467.1 SMESG000032456.1 SMESG000032323.1 Contig10733newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011283SMESG000032467.1 SMESG000032456.1 SMESG000032323.1 Contig10733uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011283SMESG000032414.1 Contig51453newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011283SMESG000032414.1 Contig51453uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011283SMESG000032426.1 SMESG000032414.1 Contig22239newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30011283SMESG000032426.1 SMESG000032414.1 Contig22239uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30011283 vs. Planmine SMEST
Match: SMESG000032426.1 (SMESG000032426.1)

HSP 1 Score: 179.874 bits (455), Expect = 6.685e-53
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 2 
Query:   23 MIESPVKPKISMRHSRTRYKCRSQFQYVTSESYTNNVSEIDLKAFNEDFKLHNVKMLRIRKSTENDLEKESSDGLLIPKFDKELLAQYKISTVKQDSPIYIP 328
            MIESPVKPKISMRHSRTR+K RSQ QY TSESYTN VSE DL+AFNEDFKL NVKMLRIRKSTENDLEKES D L IPKFDKELLAQYKISTVK+DSPIYIP
Sbjct:    1 MIESPVKPKISMRHSRTRHKFRSQLQYATSESYTNKVSESDLRAFNEDFKLLNVKMLRIRKSTENDLEKESFDELFIPKFDKELLAQYKISTVKRDSPIYIP 102
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BLAST of SMED30011283 vs. Planmine SMEST
Match: SMESG000036077.1 (SMESG000036077.1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.104e-35
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 2 
Query: 1706 CLRCCDICSKRKIDQTRTKEIFIPRYSSEFLEQIVMD---------KTYIVLMVDRFSTLISLTARYLKEH---FKTIFYSWIYRFGILKSKLTGRGQNF 1969
            C+  C IC+ RKIDQ RTKEI +PR   +FLEQI++D         K Y++++ D F  L+SL+A    +       I  +WIYRFG  +S LT +G+ F
Sbjct:  169 CINKCKICASRKIDQGRTKEILLPRTGEQFLEQIIVDIAYMETKESKNYMIVIKDCFCKLVSLSAASTHDEETILNVILNNWIYRFGRPESILTDKGRIF 268

HSP 2 Score: 75.0998 bits (183), Expect = 1.104e-35
Identity = 51/163 (31.29%), Postives = 83/163 (50.92%), Query Frame = 3 
Query: 1230 LANLAEYDF*LKYRKGEEHSNPSGLSRLKGMICTQRQTRHEESKEGKSNIRYVYSIKRTETMEKYWSSSRRISNFKSYEIC*KM---EMCIRIKLVFHST*KIY**M-----IINSRKEQQCLILVQETISGLLIITLHQELCHNGVKILFHYIERIFYWPKM 1694
            +ANL+EYDF L+YRKGEE  N  G+S L   IC+  Q  H+++KE K   RY+ S++ +  + K     ++I +  + EI   +   E  I  + +  S  K    +     ++    + +  ++V E     L+   H ELCH G+K    Y++  F+WP M
Sbjct:    1 MANLSEYDFALQYRKGEERGNADGVSHLNNTICSHCQMEHKDAKEAKCRTRYINSLQGSSNIMKII-KQKQIEDRVTSEIISHLNGNEAYIFYETISSSIFKYLKILQIQDDVLMINTDGKLAVVVPEFCVKSLVNYFHIELCHLGIKKNLFYLKDFFFWPSM 162

HSP 3 Score: 37.3502 bits (85), Expect = 1.104e-35
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = 1 
Query: 2008 SGPYQRQSNGLAESIIRALREPLP 2079
            S PYQ QSNGLAE IIR +R+ L 
Sbjct:  287 SSPYQHQSNGLAERIIRTVRDMLA 310
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BLAST of SMED30011283 vs. Planmine SMEST
Match: SMESG000049233.1 (SMESG000049233.1)

HSP 1 Score: 113.235 bits (282), Expect = 1.764e-35
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 3 
Query: 1176 FHVHEHHK-----NANQSTISK----WLANLAEYDF*LKYRKGEEHSNPSGLSRLKGMICTQRQTRHEESKEGKSNIRYVYSIKRTETMEKYWSSSRRISNFKSYEIC*KMEMCIR-----------IKLVFHST*KIY**MIINSRKEQQCLILVQETISGLLIITLHQELCHNGVKILFHYIERIFYWPKMQ 1697
            F V   HK     N  +  IS     W+ NL++YDF LKY KGE+HSN  GLSR+ GM+C+Q QTRHE +KE K  ++++  I++TE M + + +      F+      KM+ C+                     K+   ++I   K    L+LV    +  L+  +H+++C  GVK L HYI  IFYWP +Q
Sbjct:  200 FMVRTDHKALIFLNTTKKAISPQFQTWMVNLSDYDFELKYHKGEDHSNADGLSRIGGMLCSQCQTRHENAKEAKVRVKHICMIQKTEVMHQLFEAQESNKQFE------KMKKCVNNGNFGDFDKKDFFFKLRDNLKMNDGLLI-VNKNGMDLLLVPIEFTQQLVTKIHEKMCRVGVKKLVHYINNIFYWPNLQ 386

HSP 2 Score: 56.6102 bits (135), Expect = 1.764e-35
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 2 
Query: 1706 CLRCCDICSKRKIDQTRTKEIFIPRYSSEFLEQIVMD---------KTYIVLMVDRFSTLISLTARYLKEH---FKTIFYSWIYRFGI 1933
            CL+ C  C++RK++Q +TKEI +P   SEF +QIV+D         K Y V++ D FS L+SLTA   ++    ++ + + W    G+
Sbjct:  392 CLQKCQECARRKVNQEQTKEILLPHVISEFSDQIVIDIAYMKPIATKKYAVVIKD-FSKLVSLTATSKQDDKAIYRVLLHQWRIHQGV 478
[Close]
BLAST of SMED30011283 vs. Planmine SMEST
Match: SMESG000049233.1 (SMESG000049233.1)

HSP 1 Score: 113.235 bits (282), Expect = 1.914e-35
Identity = 68/194 (35.05%), Postives = 100/194 (51.55%), Query Frame = 3 
Query: 1176 FHVHEHHK-----NANQSTISK----WLANLAEYDF*LKYRKGEEHSNPSGLSRLKGMICTQRQTRHEESKEGKSNIRYVYSIKRTETMEKYWSSSRRISNFKSYEIC*K-----------MEMCIRIKLVFHST*KIY**MIINSRKEQQCLILVQETISGLLIITLHQELCHNGVKILFHYIERIFYWPKMQ 1697
            F V   HK     N  +  IS     W+ NL++YDF LKY KGE+HSN  GLSR+ GM+C+Q QTRHE +KE K  ++++  I++TE M + + +      F+  + C                 +R  L  +        +I+N  K    L+LV    +  L+  +H+++C  GVK L HYI  IFYWP +Q
Sbjct:  228 FMVRTDHKALIFLNTTKKAISPQFQTWMVNLSDYDFELKYHKGEDHSNADGLSRIGGMLCSQCQTRHENAKEAKVRVKHICMIQKTEVMHQLFEAQESNKQFEKMKKCVNNGNFGDFDKKDFFFKLRDNLKMNDG-----LLIVN--KNGMDLLLVPIEFTQQLVTKIHEKMCRVGVKKLVHYINNIFYWPNLQ 414

HSP 2 Score: 56.6102 bits (135), Expect = 1.914e-35
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 2 
Query: 1706 CLRCCDICSKRKIDQTRTKEIFIPRYSSEFLEQIVMD---------KTYIVLMVDRFSTLISLTARYLKEH---FKTIFYSWIYRFGI 1933
            CL+ C  C++RK++Q +TKEI +P   SEF +QIV+D         K Y V++ D FS L+SLTA   ++    ++ + + W    G+
Sbjct:  420 CLQKCQECARRKVNQEQTKEILLPHVISEFSDQIVIDIAYMKPIATKKYAVVIKD-FSKLVSLTATSKQDDKAIYRVLLHQWRIHQGV 506
[Close]
BLAST of SMED30011283 vs. Planmine SMEST
Match: SMESG000038612.1 (SMESG000038612.1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.885e-34
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2 
Query: 1706 CLRCCDICSKRKIDQTRTKEIFIPRYSSEFLEQIVMD---------KTYIVLMVDRFSTLISLTARYLKEH---FKTIFYSWIYRFGILKSKLTGRG 1960
            C+  C IC+ RKID+ RTKEI +PR    FLEQIV+D         K Y+++++DRF+  +SL+A   ++       I  +WIYRFG  +S LT +G
Sbjct:  483 CVNKCKICASRKIDEGRTKEILLPRTGERFLEQIVVDIEYMETKESKKYMIVIIDRFNKFVSLSATSTQDEAIILNAILNNWIYRFGRPESILTDKG 579

HSP 2 Score: 63.5438 bits (153), Expect = 9.885e-34
Identity = 49/171 (28.65%), Postives = 79/171 (46.20%), Query Frame = 3 
Query: 1197 KNANQSTISKWLANLAEYDF*LKYRKGEEHSNPSGLSRLKGMICTQRQTRHEESKEGKSNIRY----VYSIKRTETMEKYWSSSRRISNFKSYEIC*KMEMCIRIKLVFHST*KIY**MIINSRKEQQCLILVQETISGLLIITLHQELCHNGVKILFHYIERIFYWPKMQ 1697
            K A       W+ANL+EYDF L+YRK ++H N  G+S L   IC+  Q  ++++KE K   R     +  I   E    Y + S  I  FK  +I     + I+  +           ++IN+  + +  ++V +     L+   H ELCH G+     Y++  F+W  M 
Sbjct:  327 KKAISPQFQTWMANLSEYDFALQYRKEKKHGNADGMSGLNNTICSNCQMENKDAKEAKCRTRVTSEIISHINGNEAHISYETISSNI--FKYLKI-----LNIQDDV-----------LMINT--DGKLAVVVPDWYVKSLVNYFHFELCHLGIMKTLFYLKDFFFWSFMN 477

HSP 3 Score: 39.6614 bits (91), Expect = 9.885e-34
Identity = 22/57 (38.60%), Postives = 30/57 (52.63%), Query Frame = 1 
Query: 2008 SGPYQRQSNGLAESIIRALREP-----------------LPRIEFNINTSWQRASLF 2127
            S PY+ QSNGLAE IIR +R                   LP+IEF++N + Q ++ F
Sbjct:  601 SSPYEHQSNGLAERIIRTVRYMLATSLTEIKTKNNWFRLLPKIEFSLNATIQNSTKF 657
The following BLAST results are available for this feature:
BLAST of SMED30011283 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011283 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000032426.16.685e-5388.24SMESG000032426.1[more]
SMESG000036077.11.104e-3542.00SMESG000036077.1[more]
SMESG000049233.11.764e-3535.05SMESG000049233.1[more]
SMESG000049233.11.914e-3535.05SMESG000049233.1[more]
SMESG000038612.19.885e-3442.27SMESG000038612.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011283 ID=SMED30011283|Name=SMED30011283|organism=Schmidtea mediterranea sexual|type=transcript|length=2623bp
TGAAATTTTAGTTTTAAAATAAATGATAGAATCTCCGGTCAAGCCGAAAA
TTTCAATGCGGCATAGTAGAACGCGTTACAAATGCAGATCTCAATTTCAA
TACGTTACAAGTGAGAGCTATACCAATAACGTAAGTGAGATTGACCTGAA
GGCGTTTAATGAAGATTTCAAATTACATAACGTAAAAATGTTACGTATCC
GAAAATCAACAGAAAATGATTTAGAAAAGGAATCTTCTGATGGGCTTTTA
ATTCCGAAATTCGACAAAGAGTTGCTGGCCCAGTACAAGATCAGTACTGT
TAAACAAGATTCACCTATTTATATCCCAAAGGAAGTCACTTTCGAGTCAG
GCAATGAAAGAGATAAAGACAAACCAATCTCAGAATTATACAAAAGATCA
AAAAGTTTCAATGGATTTGTAAAGCATATCAAGAGAGTAATAACTCCAAA
AAAACATACTAAAAGCCTGGATTCAGAAATTGTTGACGAACAAGAAATTT
TAAAAGAAAACAAATTGAAAAAAAATAAAAAAATAAACAAAAAATTAGAA
AATACAGTCCAATTGGATAATTTCTCCTCTAGCTCTATTTTATGAATGCT
TTCGATGCCAAAATATTTTCAGAAGAATTCTATAAGCTGTTTCAGTTTGA
ATAAAATTAGTCGACTTGCAAATGTTATTATGCAAATAATTATTATGCAT
AATAATTATGTTGCATGAATTTATTTTTTAATAAACTTCGAACTTTTTAG
ACTCAAATCAGTTTTTGATCATTAAACTCAGAGAATCGGTCACATGCGTT
CATAATTGAAAAATCCGAAAAAAATACATCAAAAAATTATTATTAGGTTG
GTAGTAAAGTTGAGATAAGAATGCAGCTACCAACGCATTGAAGGCCCATT
GGGTATGTATTACAGGTGAGTGAAATACATTGTTATAACACTTTATTACA
CGAATTCTAATAATAGCAAATAATCGCGTATGCTCATGTCAAAATGTAAA
CTTTATCACTGTCAAACCTATTTGGTAGCGGCATTACTGGTTCAATAATA
AACATATTGTAAAACTTGATTCATTGAACAACTTCTCAAAGTATATACCT
CAATAGACTTGATACTTTTTTGTACACTTTTATTTGTATATCTTATTACC
TTCCTAGAATGGACACCTCCTTTCTTTTCATGTTCATGAACATCACAAAA
ACGCCAATCAGTCCACAATTTCAAAATGGCTAGCTAATCTGGCTGAATAT
GATTTTTAACTAAAATATAGGAAAGGGGAAGAACACTCTAACCCAAGTGG
GCTATCAAGATTGAAAGGTATGATTTGCACCCAGCGTCAAACAAGACATG
AAGAGTCCAAAGAAGGAAAATCAAATATCAGATATGTATACTCTATCAAA
AGAACAGAGACTATGGAAAAGTATTGGAGCAGCAGCAGAAGGATATCAAA
TTTCAAGAGCTACGAGATATGTTAGAAAATGGAAATGTGCATACGAATAA
AACTTGTTTTTCATTCAACGTAAAAAATCTATTGATGAATGATTATTAAC
AGTAGAAAAGAACAACAATGTCTTATTTTAGTTCAAGAAACCATTTCAGG
CTTATTAATAATAACCTTACACCAAGAATTATGCCATAATGGAGTTAAGA
TACTATTCCATTATATAGAAAGGATATTTTACTGGCCGAAGATGCAGGGC
TACTTTGTCTACGATGTTGTGATATCTGTTCTAAGAGGAAGATTGATCAG
ACAAGAACCAAGGAAATATTTATCCCTAGATACAGCTCTGAATTCCTAGA
ACAAATTGTTATGGATAAAACATATATTGTATTAATGGTTGATCGTTTTA
GTACATTGATTTCTTTGACCGCAAGATATTTGAAGGAACACTTCAAGACG
ATATTTTACAGTTGGATCTATCGTTTCGGAATACTAAAGAGCAAATTGAC
AGGCAGAGGCCAAAATTTTTAAAGAGACTACTGAAACTTGGTATCATATA
AAAATTCAGCGGACCTTACCAGCGTCAATCAAACGGATTAGCTGAAAGTA
TTATAAGAGCGCTAAGAGAACCTTTACCTAGAATAGAGTTCAACATAAAT
ACCAGTTGGCAAAGAGCTTCATTATTTGATATAATGCTAGGCGGAGTGTT
AACTTATATACAAACTTGAGGCAAGCAGATATATCAAAGGGATAATCGAT
GGACGATATGAGATATAACTCAGATAAAACTACATATAATATGAGAGCTA
TGGAACAACAGAGAGAAACGCTCGTGTTTTAAGGTGGTAGGATGAGTAGA
AGTGCATAACAGACACAAAGATAGTATGCAGTACGAAGGCCCATACAAAG
TCATCAGGTGTCTATCCTCCCATCTAGTCGAACTTCATTCCCAAGTTGGA
ACGAAAGAAAGAAGAATTTAGTGGCTGAAATCTTAAGAAGAGAAAAGTTA
AGATATTTAAATTATCTTGTTTTTAAATAATTGATTATTTGACAATTAGG
AAATTAAAATAAATCTTATGATGGAAATTAATTCTCTTTAAATTGTAAAT
ATAAGAATAATAATTAATCATAATAATAAGTACCAGATAAGTAAATAAAA
AAAAACCCCTTGCTGCAAAGTAA
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protein sequence of SMED30011283-orf-1

>SMED30011283-orf-1 ID=SMED30011283-orf-1|Name=SMED30011283-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=191bp
MIESPVKPKISMRHSRTRYKCRSQFQYVTSESYTNNVSEIDLKAFNEDFK
LHNVKMLRIRKSTENDLEKESSDGLLIPKFDKELLAQYKISTVKQDSPIY
IPKEVTFESGNERDKDKPISELYKRSKSFNGFVKHIKRVITPKKHTKSLD
SEIVDEQEILKENKLKKNKKINKKLENTVQLDNFSSSSIL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut