Decapping enzyme like-1 protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011227 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 20Note: Hover over icons to view figure legend
Homology
BLAST of Decapping enzyme like-1 protein vs. TrEMBL
Match: D5JG39 (Decapping enzyme like-1 protein (Fragment) OS=Dugesia japonica OX=6161 GN=DCPL-1 PE=2 SV=1) HSP 1 Score: 910.598 bits (2352), Expect = 0.000e+0 Identity = 535/879 (60.86%), Postives = 646/879 (73.49%), Query Frame = 1 Query: 67 VIVLPNGDECPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITSKQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSI-VPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELD-KGWSRPSVTNPEEPIVTEVKEPEFVVRYFENVIEPEIDSKV----NFSQSNDQLLKTSAIGIPTATESPLK-----QIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNNSKDNXXXXXXXXXXXXXXXXXXXTSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLDFIQEPVKENILSENVDFXXXXXXXXXXXXTQICE------LKSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPXXXXXXXXXXXXXXXXXPADVSKSPVISGTKIPTGIPRMSSK 2652 +I+LPNGDECPAGKIKDETKLLNLVSAEYGI DIS+FHLQKQKNRY LKL+FIP G+LH++NAKKFV FELIRNGINC IRIN+DLNKRA ILDLVNN DPN+KETVRAKLS +DVA ELE TDLLL+DAQFNSFKYSVLNNKKM CLLCVNSHGI RAL+ F+ QD +MW+DI NIT K KK+ IHK++G+I EI CLNSKMA VA+ HL +YL FK ++ +P P RISL+IRKSFSRR+ ST Q + S +KP S K M S APST+PESSFISED+M+NP+S+VEPSLKTNSTYDVSLGSDNSYRPT+TSLS EELSHN DK+SSFQK DDHISL TTSTYEVSLDSRQL+RP+++D+D TG TQLSSFG++S R+SPPL V+KDIIP+E D K WSRP +T PEEP V E K+ + ++ E ++EP +SK N ++S+ + + IP +T + +K Q+P E+ KIAPEPP+RTISD SN KD+ ++ PP D+NKKL + IEPIKEEETI IN+ LE ++S+ P+S+ Y+V TT+ NE++LP E IV+P +VP + SEN + VE + + IQE +K+N+LSE +D ++ E +++T + +K +S+LPISKQRSIPSPKIQRPSRVS +GFPSPKEERKEF+SGIP+ + QSPSDKENY+ NK+ I D+N K+ ERPSSNFSRFE QE KVDSKTT+TSV+TVGDSIVKKSTQTEISS+KSTGIPTPKQYKSTTTITTTVKKPA++SKSP S TKIPTGIPRMSSK Sbjct: 2 LIILPNGDECPAGKIKDETKLLNLVSAEYGIADDISYFHLQKQKNRYLLKLLFIPCKTGDLHTNNAKKFVIFELIRNGINCAIRINEDLNKRAAIILDLVNNTDPNSKETVRAKLSEFLDVATELEDTTDLLLTDAQFNSFKYSVLNNKKMACLLCVNSHGISMRALESPFDEQDKIMWSDIKNITCKHKKLFIHKNDGQISEITCLNSKMAHVANIHLRKYLTFKGTMSIPVTP-NIFVRISLQIRKSFSRRSNARPSTIQ-STGSPVSDKPVSTKLMQIQSQAPSTIPESSFISEDVMDNPVSMVEPSLKTNSTYDVSLGSDNSYRPTITSLSIEELSHNGDKVSSFQKPFQQSVDDHISLKTTSTYEVSLDSRQLIRPITNDSDPPI-TGPTQLSSFGSNSNRISPPLVQVKKDIIPLEKDNKNWSRPLITKPEEPFVKENKDSDILLS--EKIVEPVFESKQSIDRNSTKSDPEFIVKPQEIIPQSTNNNIKTDTHTQVPVEVNN---------KIAPEPPVRTISDHSNNEIIKDD-KEKPDKAQPPCVPIRTTGIPDVNKKLTITIEPIKEEETIPTINE--LEHSVSKHIDPISQTYTVTTTTFTNEVMLPAENIVIPMFVPPIFSENLQTVDAQLQDSVVS--VEMESECIQESMKDNVLSERIDLRGNDEVETGVQSTPNTDVNNTDTIKVESKLPISKQRSIPSPKIQRPSRVSEQGFPSPKEERKEFVSGIPVNIPQSPSDKENYQKNKNNIDDTNMDNNLTP--------KSSIERPSSNFSRFESQEYKVDSKTTFTSVSTVGDSIVKKSTQTEISSMKSTGIPTPKQYKSTTTITTTVKKPAEISKSPSNSATKIPTGIPRMSSK 853
BLAST of Decapping enzyme like-1 protein vs. Planmine SMEST
Match: SMESG000029986.1 (SMESG000029986.1) HSP 1 Score: 1620.14 bits (4194), Expect = 0.000e+0 Identity = 863/870 (99.20%), Postives = 865/870 (99.43%), Query Frame = 1 Query: 43 MPSKSKEKVIVLPNGDECPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITSKQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVTNPEEPIVTEVKEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNNSKDNXXXXXXXXXXXXXXXXXXXTSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLDFIQEPVKENILSENVDFXXXXXXXXXXXXTQICELKSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPXXXXXXXXXXXXXXXXXPADVSKSPVISGTKIPTGIPRMSSK 2652 MPSKSKEKVIVLPNGDE PAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNIT+KQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVT PEEPI+TEVKEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGN SKDNQEQADQIQPPPPPIRAAIITSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLD IQEPVKENILSENVDFEKKEKSENEIENTQICE KSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPTPKQYKSTTTITTTVKKPADVSKSPVISGTKIPTGIPRMSSK Sbjct: 1 MPSKSKEKVIVLPNGDEFPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITAKQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVTKPEEPILTEVKEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNISKDNQEQADQIQPPPPPIRAAIITSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLDLIQEPVKENILSENVDFEKKEKSENEIENTQICEPKSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPTPKQYKSTTTITTTVKKPADVSKSPVISGTKIPTGIPRMSSK 870 The following BLAST results are available for this feature:
BLAST of Decapping enzyme like-1 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of Decapping enzyme like-1 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Decapping enzyme like-1 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011227 ID=SMED30011227|Name=Decapping enzyme like-1 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3061bpback to top protein sequence of SMED30011227-orf-1 >SMED30011227-orf-1 ID=SMED30011227-orf-1|Name=SMED30011227-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=871bp MPSKSKEKVIVLPNGDECPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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