Decapping enzyme like-1 protein

Overview
NameDecapping enzyme like-1 protein
Smed IDSMED30011227
Length (bp)3061
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Decapping enzyme like-1 protein (SMED30011227) t-SNE clustered cells

Violin plots show distribution of expression levels for Decapping enzyme like-1 protein (SMED30011227) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Decapping enzyme like-1 protein (SMED30011227) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Decapping enzyme like-1 protein (SMED30011227) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011227

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 20

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30011227SMESG000029986.1 dd_Smed_v4_2353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30011227SMESG000029986.1 dd_Smed_v4_2353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30011227SMESG000029986.1 dd_Smed_v4_2353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v4_448_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v4_448_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v4_448_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v4_448_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v4_448_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v6_448_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v6_448_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v6_448_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v6_448_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
oocyteSMED30011227SMESG000066650.1 Contig5529GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30011227SMESG000066650.1 Contig5529GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30011227SMESG000066650.1 Contig5529GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30011227SMESG000029986.1 Contig5529GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30011227SMESG000029986.1 Contig5529GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30011227SMESG000029986.1 Contig5529GPL15192PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
epidermisSMED30011227SMESG000029986.1 dd_Smed_v4_2353_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30011227SMESG000037126.1 SMESG000026646.1 dd_Smed_v4_448_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of Decapping enzyme like-1 protein vs. TrEMBL
Match: D5JG39 (Decapping enzyme like-1 protein (Fragment) OS=Dugesia japonica OX=6161 GN=DCPL-1 PE=2 SV=1)

HSP 1 Score: 910.598 bits (2352), Expect = 0.000e+0
Identity = 535/879 (60.86%), Postives = 646/879 (73.49%), Query Frame = 1 
Query:   67 VIVLPNGDECPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITSKQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSI-VPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELD-KGWSRPSVTNPEEPIVTEVKEPEFVVRYFENVIEPEIDSKV----NFSQSNDQLLKTSAIGIPTATESPLK-----QIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNNSKDNXXXXXXXXXXXXXXXXXXXTSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLDFIQEPVKENILSENVDFXXXXXXXXXXXXTQICE------LKSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPXXXXXXXXXXXXXXXXXPADVSKSPVISGTKIPTGIPRMSSK 2652
            +I+LPNGDECPAGKIKDETKLLNLVSAEYGI  DIS+FHLQKQKNRY LKL+FIP   G+LH++NAKKFV FELIRNGINC IRIN+DLNKRA  ILDLVNN DPN+KETVRAKLS  +DVA ELE  TDLLL+DAQFNSFKYSVLNNKKM CLLCVNSHGI  RAL+  F+ QD +MW+DI NIT K KK+ IHK++G+I EI CLNSKMA VA+ HL +YL FK ++ +P  P     RISL+IRKSFSRR+    ST Q +  S   +KP S K M   S APST+PESSFISED+M+NP+S+VEPSLKTNSTYDVSLGSDNSYRPT+TSLS EELSHN DK+SSFQK      DDHISL TTSTYEVSLDSRQL+RP+++D+D    TG TQLSSFG++S R+SPPL  V+KDIIP+E D K WSRP +T PEEP V E K+ + ++   E ++EP  +SK     N ++S+ + +      IP +T + +K     Q+P E+           KIAPEPP+RTISD SN    KD+ ++      PP          D+NKKL + IEPIKEEETI  IN+  LE ++S+   P+S+ Y+V TT+  NE++LP E IV+P +VP + SEN           +    VE + + IQE +K+N+LSE +D    ++ E  +++T   +      +K +S+LPISKQRSIPSPKIQRPSRVS +GFPSPKEERKEF+SGIP+ + QSPSDKENY+ NK+ I     D+N           K+  ERPSSNFSRFE QE KVDSKTT+TSV+TVGDSIVKKSTQTEISS+KSTGIPTPKQYKSTTTITTTVKKPA++SKSP  S TKIPTGIPRMSSK
Sbjct:    2 LIILPNGDECPAGKIKDETKLLNLVSAEYGIADDISYFHLQKQKNRYLLKLLFIPCKTGDLHTNNAKKFVIFELIRNGINCAIRINEDLNKRAAIILDLVNNTDPNSKETVRAKLSEFLDVATELEDTTDLLLTDAQFNSFKYSVLNNKKMACLLCVNSHGISMRALESPFDEQDKIMWSDIKNITCKHKKLFIHKNDGQISEITCLNSKMAHVANIHLRKYLTFKGTMSIPVTP-NIFVRISLQIRKSFSRRSNARPSTIQ-STGSPVSDKPVSTKLMQIQSQAPSTIPESSFISEDVMDNPVSMVEPSLKTNSTYDVSLGSDNSYRPTITSLSIEELSHNGDKVSSFQKPFQQSVDDHISLKTTSTYEVSLDSRQLIRPITNDSDPPI-TGPTQLSSFGSNSNRISPPLVQVKKDIIPLEKDNKNWSRPLITKPEEPFVKENKDSDILLS--EKIVEPVFESKQSIDRNSTKSDPEFIVKPQEIIPQSTNNNIKTDTHTQVPVEVNN---------KIAPEPPVRTISDHSNNEIIKDD-KEKPDKAQPPCVPIRTTGIPDVNKKLTITIEPIKEEETIPTINE--LEHSVSKHIDPISQTYTVTTTTFTNEVMLPAENIVIPMFVPPIFSENLQTVDAQLQDSVVS--VEMESECIQESMKDNVLSERIDLRGNDEVETGVQSTPNTDVNNTDTIKVESKLPISKQRSIPSPKIQRPSRVSEQGFPSPKEERKEFVSGIPVNIPQSPSDKENYQKNKNNIDDTNMDNNLTP--------KSSIERPSSNFSRFESQEYKVDSKTTFTSVSTVGDSIVKKSTQTEISSMKSTGIPTPKQYKSTTTITTTVKKPAEISKSPSNSATKIPTGIPRMSSK 853
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BLAST of Decapping enzyme like-1 protein vs. Planmine SMEST
Match: SMESG000029986.1 (SMESG000029986.1)

HSP 1 Score: 1620.14 bits (4194), Expect = 0.000e+0
Identity = 863/870 (99.20%), Postives = 865/870 (99.43%), Query Frame = 1 
Query:   43 MPSKSKEKVIVLPNGDECPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITSKQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVTNPEEPIVTEVKEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNNSKDNXXXXXXXXXXXXXXXXXXXTSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLDFIQEPVKENILSENVDFXXXXXXXXXXXXTQICELKSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPXXXXXXXXXXXXXXXXXPADVSKSPVISGTKIPTGIPRMSSK 2652
            MPSKSKEKVIVLPNGDE PAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNIT+KQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVT PEEPI+TEVKEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGN SKDNQEQADQIQPPPPPIRAAIITSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLD IQEPVKENILSENVDFEKKEKSENEIENTQICE KSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPTPKQYKSTTTITTTVKKPADVSKSPVISGTKIPTGIPRMSSK
Sbjct:    1 MPSKSKEKVIVLPNGDEFPAGKIKDETKLLNLVSAEYGIGQDISFFHLQKQKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKRAQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFKYSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITAKQKKINIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRISLRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESSFISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQDKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTGQTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVTKPEEPILTEVKEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQIPPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNISKDNQEQADQIQPPPPPIRAAIITSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEAYSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVENQLDLIQEPVKENILSENVDFEKKEKSENEIENTQICEPKSDSRLPISKQRSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENNKDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTYTSVTTVGDSIVKKSTQTEISSVKSTGIPTPKQYKSTTTITTTVKKPADVSKSPVISGTKIPTGIPRMSSK 870
The following BLAST results are available for this feature:
BLAST of Decapping enzyme like-1 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
D5JG390.000e+060.86Decapping enzyme like-1 protein (Fragment) OS=Duge... [more]
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Decapping enzyme like-1 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000029986.10.000e+099.20SMESG000029986.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011227 ID=SMED30011227|Name=Decapping enzyme like-1 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=3061bp
GTAATTTACAGTGTAATTTGAAATCTGCAGCAAATTAAATTAATGCCGTC
CAAAAGTAAAGAGAAAGTTATAGTTCTGCCTAACGGTGATGAATGTCCTG
CTGGAAAAATTAAAGACGAAACTAAACTGCTGAATTTGGTGTCTGCCGAG
TACGGCATAGGACAGGATATTTCCTTTTTCCATCTCCAGAAACAGAAAAA
TCGATACAATTTGAAATTGATTTTCATTCCACGCCATGTCGGAGAGCTTC
ATTCCGATAATGCCAAGAAATTTGTCACGTTCGAACTGATTAGAAACGGA
ATCAATTGTACGATTCGGATCAATGATGACCTAAATAAACGGGCTCAAGC
TATTCTAGACCTGGTCAACAATAAAGATCCGAATGCAAAGGAAACAGTTC
GAGCAAAATTGAGTGCGATTATCGATGTGGCAGAGGAATTGGAGCAGATC
ACGGATTTATTGCTTTCTGATGCGCAATTCAATTCATTCAAATATTCTGT
GCTGAACAACAAAAAGATGACTTGCTTACTGTGCGTGAATTCCCACGGCA
TTTACGCGAGGGCATTAGATGACACATTCGAGGTTCAGGACAGTGTCATG
TGGACTGATATCAGCAATATCACCTCCAAACAGAAGAAAATCAACATCCA
CAAGCACAATGGGGAAATATTTGAGATTATCTGTCTCAATTCAAAAATGG
CGCGTGTGGCAGACGCGCACTTATGCCGATATTTGAAATTTAAATGCTCG
ATTGTACCTCAACAACCGTTAGGCTGGCTCGGGCGAATAAGCCTACGAAT
TCGGAAATCATTCAGTAGACGGGCTACCTTGCACACGTCGACTAATCAAC
CGGCAATCAACTCGTCAGAGCTTGAAAAACCCAAATCCATTAAACCAATG
CCCAGCCACTCTTTAGCTCCATCAACTGTTCCAGAGAGCTCATTTATTTC
CGAGGATATTATGGAAAATCCAATTTCAATCGTCGAGCCGTCATTGAAAA
CCAATTCCACATATGACGTGTCATTGGGATCAGATAACTCTTATCGACCA
ACACTTACATCTCTCTCGACCGAGGAGTTGTCTCACAATCAAGACAAGAT
CTCCTCGTTCCAGAAAGCTTCTCTTCCTCCGGCAGACGATCATATTTCCC
TAAACACAACATCTACCTACGAGGTTAGTCTTGACAGTCGGCAATTGGTT
AGACCGATGTCCAGTGATAATGACTCATCATCAAATACCGGCCAAACTCA
ATTGTCGTCCTTTGGAAATAGCTCAACTCGAGTCAGTCCGCCATTGGCTC
CAGTTAGAAAGGATATAATCCCTATGGAACTTGATAAAGGTTGGTCACGA
CCATCAGTGACGAATCCAGAAGAACCGATTGTGACGGAAGTCAAAGAGCC
AGAATTTGTTGTTCGTTATTTCGAAAATGTAATTGAACCGGAAATCGATT
CCAAAGTGAATTTTAGCCAATCAAATGATCAGCTATTGAAAACATCAGCA
ATAGGAATTCCGACCGCAACGGAAAGTCCGTTGAAACAGATTCCACCAGA
GCTTCCAAAACATGGCACCTCTGATACTTGCTATATCAAGATAGCTCCTG
AGCCACCAATAAGAACAATTAGTGACCAATCTAATGGTAATAATTCCAAA
GACAACCAAGAACAGGCTGACCAAATCCAGCCCCCTCCTCCACCAATCAG
AGCAGCGATAATTACGTCGGATATGAACAAAAAACTGGCTATGTTTATCG
AACCGATAAAGGAAGAGGAAACAATAATTGCAATCAACGATCCAATATTG
GAATCAAACATATCTAGAACGACTATGCCAGTATCGGAGGCATATTCGGT
AATTACGACGTCAATGGCAAATGAAATGATTTTACCGGAGGAAACTATCG
TCCTACCTACATATGTACCTCTGATGCTTTCTGAAAATTATCCACCACCA
GCTGGCTCTCCTGCCAAGGAAATTCCAGAGAGTCCAGTTGAAAATCAATT
AGACTTTATTCAAGAACCGGTTAAAGAAAACATTTTATCGGAGAATGTTG
ACTTTGAAAAGAAAGAGAAATCAGAGAATGAGATCGAAAATACCCAAATA
TGTGAACTTAAATCTGATTCCAGGCTCCCGATCTCCAAGCAAAGATCAAT
TCCTAGCCCAAAAATTCAGAGACCAAGTCGTGTTTCTGTTAAAGGATTTC
CTTCTCCCAAAGAAGAAAGAAAAGAATTCTTATCGGGTATTCCAATACAA
ATGGCACAATCTCCGTCGGATAAAGAAAACTATGAGAATAATAAAGATAA
AATAGGACATGATCAGACTGATCATAATGGTGGTGGTGATGAGGATATTA
ATAATGATATAAAAACTGACACAGAGAGACCAAGTTCAAATTTTAGCCGA
TTCGAAGGTCAAGAATGCAAGGTTGATTCCAAGACAACTTACACATCTGT
TACAACTGTCGGGGATTCGATTGTGAAAAAGTCAACACAGACCGAGATCT
CGTCAGTAAAGTCCACCGGTATTCCAACTCCCAAACAGTACAAATCTACC
ACCACAATCACAACTACAGTGAAGAAACCTGCTGACGTGTCTAAAAGCCC
AGTTATTAGTGGTACAAAAATTCCGACGGGCATTCCAAGAATGTCCTCAA
AATGAAATTGACTCCTTGACAAATTGCAAATGACACTGTCTGTCAACTGC
CGACATGAAATTCTCATCAAATTAATGACTGACCTGACCCCAGCAGCTTT
GCTGGGGTGTGATATATCGTATGTCGTGTAGTTGATCTTATTTTAATTAC
AACTATTATCATTATTATTATTATTATCACTATTATTTATTATTACTACT
ATTATGGCAACGATGATGTGAAACTATATTTACCGATGTGTATTACATGT
TCTCTATTATTAGGCTTTTATTAAATGGCAGTTGTTGTTGATCTTGCCCG
TTGCTGGTTTGGTGTTCACGCTTGGCCTGCACGCATCAATATAACCCCTC
CCCTCCCCGCTCACATCGCTACCTGAGCGCACCGAACCGTCGCTGGGCAT
ATTTGTAATAT
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protein sequence of SMED30011227-orf-1

>SMED30011227-orf-1 ID=SMED30011227-orf-1|Name=SMED30011227-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=871bp
MPSKSKEKVIVLPNGDECPAGKIKDETKLLNLVSAEYGIGQDISFFHLQK
QKNRYNLKLIFIPRHVGELHSDNAKKFVTFELIRNGINCTIRINDDLNKR
AQAILDLVNNKDPNAKETVRAKLSAIIDVAEELEQITDLLLSDAQFNSFK
YSVLNNKKMTCLLCVNSHGIYARALDDTFEVQDSVMWTDISNITSKQKKI
NIHKHNGEIFEIICLNSKMARVADAHLCRYLKFKCSIVPQQPLGWLGRIS
LRIRKSFSRRATLHTSTNQPAINSSELEKPKSIKPMPSHSLAPSTVPESS
FISEDIMENPISIVEPSLKTNSTYDVSLGSDNSYRPTLTSLSTEELSHNQ
DKISSFQKASLPPADDHISLNTTSTYEVSLDSRQLVRPMSSDNDSSSNTG
QTQLSSFGNSSTRVSPPLAPVRKDIIPMELDKGWSRPSVTNPEEPIVTEV
KEPEFVVRYFENVIEPEIDSKVNFSQSNDQLLKTSAIGIPTATESPLKQI
PPELPKHGTSDTCYIKIAPEPPIRTISDQSNGNNSKDNQEQADQIQPPPP
PIRAAIITSDMNKKLAMFIEPIKEEETIIAINDPILESNISRTTMPVSEA
YSVITTSMANEMILPEETIVLPTYVPLMLSENYPPPAGSPAKEIPESPVE
NQLDFIQEPVKENILSENVDFEKKEKSENEIENTQICELKSDSRLPISKQ
RSIPSPKIQRPSRVSVKGFPSPKEERKEFLSGIPIQMAQSPSDKENYENN
KDKIGHDQTDHNGGGDEDINNDIKTDTERPSSNFSRFEGQECKVDSKTTY
TSVTTVGDSIVKKSTQTEISSVKSTGIPTPKQYKSTTTITTTVKKPADVS
KSPVISGTKIPTGIPRMSSK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000074oocyte
PLANA:0000231vitelline gland
PLANA:0002032epidermal cell
PLANA:0002089reproductive organ
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 745..781
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 675..790
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 688..709
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 387..419
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 387..416
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 847..870
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..297