SMED30011131
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011131 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Alignments
SMED30011131 aligns in the following genomic locations:
Homology
BLAST of SMED30011131 vs. Planmine SMEST
Match: SMESG000050000.1 (SMESG000050000.1) HSP 1 Score: 509.22 bits (1310), Expect = 1.951e-178 Identity = 268/272 (98.53%), Postives = 268/272 (98.53%), Query Frame = 1 Query: 181 MKLKXXXXXXXXXXXXXXXQYSFGFIVNFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLEKNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 996 MKLKINILFICLIFVIILIQYSFG I NFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLE NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAY VTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM Sbjct: 1 MKLKINILFICLIFVIILIQYSFGLIANFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLESNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYLVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 272 HSP 2 Score: 491.5 bits (1264), Expect = 1.590e-171 Identity = 241/250 (96.40%), Postives = 241/250 (96.40%), Query Frame = 1 Query: 244 SFGFIVNFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLEKNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF 993 SFG I NFSQRNTNLSVIINVTGIEPQ AFYV VSESFC TSNLISFNSHNLSDTGQRLE NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPS IGGTILAY VTIGGQLNDSVCIKRWLLSC DCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF Sbjct: 311 SFGLIANFSQRNTNLSVIINVTGIEPQTAFYVNVSESFCLTSNLISFNSHNLSDTGQRLESNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSGIGGTILAYLVTIGGQLNDSVCIKRWLLSCGDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF 560
BLAST of SMED30011131 vs. Planmine SMEST
Match: SMESG000005243.1 (SMESG000005243.1) HSP 1 Score: 492.656 bits (1267), Expect = 2.150e-176 Identity = 241/251 (96.02%), Postives = 244/251 (97.21%), Query Frame = 1 Query: 241 YSFGFIVNFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLEKNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF 993 +SFG + NFSQRNTNLSVIINVTGIEPQ AFYVKVSESFCFTSNLISFNSHNLSDTGQ LE NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYAN TWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAY VT+GGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF Sbjct: 13 HSFGLVANFSQRNTNLSVIINVTGIEPQTAFYVKVSESFCFTSNLISFNSHNLSDTGQLLESNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANLTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYLVTMGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF 263
BLAST of SMED30011131 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1) HSP 1 Score: 498.434 bits (1282), Expect = 2.084e-173 Identity = 263/272 (96.69%), Postives = 265/272 (97.43%), Query Frame = 1 Query: 181 MKLKXXXXXXXXXXXXXXXQYSFGFIVNFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLEKNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 996 MKLKINILFICLIFVIILIQYSFG I NFSQRN NLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQ LEKNCTLVNYLNGNIVNG VYATFNICCIVSG+MYEISINY NSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAY VTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF+ Sbjct: 1 MKLKINILFICLIFVIILIQYSFGLIANFSQRNANLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQLLEKNCTLVNYLNGNIVNGHVYATFNICCIVSGKMYEISINYVNSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYLVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFI 272 HSP 2 Score: 66.2402 bits (160), Expect = 1.802e-11 Identity = 67/247 (27.13%), Postives = 113/247 (45.75%), Query Frame = 1 Query: 430 CTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM---------YSNGGSFNPGVDYRRPVLTIFPDCEIHQTFRKLFYNGQSIENQCI 1131 C +N LN N + T N I+S Y I+I N W ++ T + S PV N+ S + L I W P G I+ YF+ + N+ C+ L+C+DC+ + + + S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ TDQ++ S+ SF + + PV++ + EI Q F + Q+ N+C+ Sbjct: 343 CYTINGLNFNSNDKSFSMTINDGKILSYTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNE--CVLTMSLNCTDCKNNLSV--PRMPENSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYISGPVTNLSVTSSFPSFPLSIIWSPPVVS---NGEIVQYFIWV----QNTNNECV 576
BLAST of SMED30011131 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1) HSP 1 Score: 496.893 bits (1278), Expect = 2.620e-164 Identity = 263/272 (96.69%), Postives = 265/272 (97.43%), Query Frame = 1 Query: 181 MKLKXXXXXXXXXXXXXXXQYSFGFIVNFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLEKNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 996 MKLKINILFICLIFVIILIQYSFG I NFSQRN NLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQ LEKNCTLVNYLNGNIVNG VYATFNICCIVSG+MYEISINY NSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAY VTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF+ Sbjct: 1 MKLKINILFICLIFVIILIQYSFGLIANFSQRNANLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQLLEKNCTLVNYLNGNIVNGHVYATFNICCIVSGKMYEISINYVNSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYLVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFI 272 HSP 2 Score: 71.633 bits (174), Expect = 4.140e-13 Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 1 Query: 427 NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFMYSNGGSFNPGVDYRRP 1044 NC +N LN N N T N I+ Y I+I N W S++ T + S PV NL+ TS + L I W P G I+ YF+ + N+ C+ L+C+DC+ + + + S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ TDQ Y++G N V P Sbjct: 472 NCYTINGLNFNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNE--CVLTMSLNCTDCKNNLSV--PRIPENSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQ--YTSGSIMNLSVASSFP 673 HSP 3 Score: 67.0106 bits (162), Expect = 1.312e-11 Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1 Query: 427 NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFMYSNGGSFN 1020 NC +N LN N N T N I+ Y I+I N W S++ T + S + NL+ S + L I W+ P G I+ Y + + N+ C+ +C+DC+ + ++ D S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ T+Q++ +FN Sbjct: 602 NCYTINGLNFNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQNTNNE--CVLTVSFNCTDCKNNLSV--PAMPDNSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINVRSLNGYGWGNSSSKTIQTNQYISGPVSNFN 797 HSP 4 Score: 66.6254 bits (161), Expect = 1.725e-11 Identity = 55/193 (28.50%), Postives = 91/193 (47.15%), Query Frame = 1 Query: 430 CTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 996 C +N LN N + T N I+S Y I+I N W ++ T + S PV N+ S + L I W P G I+ YF+ + N+ C+ L+C+DC+ + + + S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ TDQ++ Sbjct: 343 CYTINGLNFNSNDKSFSMTINDGKILSYTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNE--CVLTMSLNCTDCKNNLSV--PRMPENSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYI 529
BLAST of SMED30011131 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1) HSP 1 Score: 497.278 bits (1279), Expect = 3.324e-164 Identity = 263/272 (96.69%), Postives = 265/272 (97.43%), Query Frame = 1 Query: 181 MKLKXXXXXXXXXXXXXXXQYSFGFIVNFSQRNTNLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQRLEKNCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 996 MKLKINILFICLIFVIILIQYSFG I NFSQRN NLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQ LEKNCTLVNYLNGNIVNG VYATFNICCIVSG+MYEISINY NSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAY VTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQF+ Sbjct: 1 MKLKINILFICLIFVIILIQYSFGLIANFSQRNANLSVIINVTGIEPQNAFYVKVSESFCFTSNLISFNSHNLSDTGQLLEKNCTLVNYLNGNIVNGHVYATFNICCIVSGKMYEISINYVNSTWRESANITAFSKSPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYLVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFI 272 HSP 2 Score: 72.0182 bits (175), Expect = 3.454e-13 Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 1 Query: 427 NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFMYSNGGSFNPGVDYRRP 1044 NC +N LN N N T N I+ Y I+I N W S++ T + S PV NL+ TS + L I W P G I+ YF+ + N+ C+ L+C+DC+ + + + S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ TDQ Y++G N V P Sbjct: 472 NCYTINGLNFNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNE--CVLTMSLNCTDCKNNLSV--PRIPENSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQ--YTSGSIMNLSVASSFP 673 HSP 3 Score: 67.0106 bits (162), Expect = 1.166e-11 Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1 Query: 427 NCTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFMYSNGGSFN 1020 NC +N LN N N T N I+ Y I+I N W S++ T + S + NL+ S + L I W+ P G I+ Y + + N+ C+ +C+DC+ + ++ D S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ T+Q++ +FN Sbjct: 602 NCYTINGLNFNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQNTNNE--CVLTVSFNCTDCKNNLSV--PAMPDNSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINVRSLNGYGWGNSSSKTIQTNQYISGPVSNFN 797 HSP 4 Score: 66.6254 bits (161), Expect = 1.505e-11 Identity = 55/193 (28.50%), Postives = 91/193 (47.15%), Query Frame = 1 Query: 430 CTLVNYLNGNIVNGQVYATFNICCIVSGQMYEISINYANS-TWRESANITAFSK---SPPVQNLNGTSKWGVNNLLIEWDRPSAIGGTILAYFVTIGGQLNDSVCIKRWLLSCSDCQESAQAIGQSLQDPSVRNCSQINNASSFVSTADKHLSLATNDSDVKPATSYLVIATALNEFGWGDAQSISLLTDQFM 996 C +N LN N + T N I+S Y I+I N W ++ T + S PV N+ S + L I W P G I+ YF+ + N+ C+ L+C+DC+ + + + S NC IN + ++ +K S+ ND + P T+Y + +LN +GWG++ S ++ TDQ++ Sbjct: 343 CYTINGLNFNSNDKSFSMTINDGKILSYTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNE--CVLTMSLNCTDCKNNLSV--PRMPENSTDNCYTINGLN--FNSNNKSFSMTINDGKILPYTNYTINIRSLNGYGWGNSSSKTIQTDQYI 529 The following BLAST results are available for this feature:
BLAST of SMED30011131 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30011131 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30011131 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30011131 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30011131 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011131 ID=SMED30011131|Name=SMED30011131|organism=Schmidtea mediterranea sexual|type=transcript|length=1213bpback to top protein sequence of SMED30011131-orf-1 >SMED30011131-orf-1 ID=SMED30011131-orf-1|Name=SMED30011131-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=336bp MKLKINILFICLIFVIILIQYSFGFIVNFSQRNTNLSVIINVTGIEPQNAback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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