HTH La-type RNA-binding domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30011104 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Human
Match: LARP6 (La ribonucleoprotein 6, translational regulator [Source:HGNC Symbol;Acc:HGNC:24012]) HSP 1 Score: 89.7373 bits (221), Expect = 4.304e-18 Identity = 55/191 (28.80%), Postives = 102/191 (53.40%), Query Frame = 1 Query: 1111 PPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWD----PS--IYIRSLF----LWNL--PRICDSYEK--LDQVFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 PP + +I +V Q FYFSD N+ KD F+LK ++ N G++S+ + FK++ L+ D +A+ YS ++++ D +RR P+P + PS + + L+ LW L P+ ++ ++ + + G F V++ R ++ R +P D+R++ + +G C ++EF EA + A EF+ Sbjct: 87 PPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTR-DWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFM 276
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Human
Match: LARP7 (La ribonucleoprotein 7, transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:24912]) HSP 1 Score: 51.2174 bits (121), Expect = 3.421e-6 Identity = 45/209 (21.53%), Postives = 99/209 (47.37%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFV-VNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFYLDAKEELPKPAVIVGKSSKSLPPP 1743 + ++ I KQ +F+F DAN+ KD F+ ++++ + G++ ++ + F ++ KL+ D + A+ S V++ + + +RR+ P+ + R++++ LP+ + + +++VF + G V +++ Y D + +EF ++E A EF++ + EE P+ I K+ K+ P P Sbjct: 32 KQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDG-KLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVN-HSWIERVFGKCGNVVYISIPHY-----KSTGDPKGF------------AFVEFETKEQAAKAIEFLN-----------NPPEEAPRKPGIFPKTVKNKPIP 210
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Human
Match: LARP7 (La ribonucleoprotein 7, transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:24912]) HSP 1 Score: 47.7506 bits (112), Expect = 5.260e-6 Identity = 22/87 (25.29%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPD 1380 + ++ I KQ +F+F DAN+ KD F+ ++++ + G++ ++ + F ++ KL+ D + A+ S V++ + + +RR+ P+ + Sbjct: 32 KQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDG-KLIARALRSSAVVELDLEGTRIRRKKPLGE 117
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Human
Match: LARP7 (La ribonucleoprotein 7, transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:24912]) HSP 1 Score: 51.6026 bits (122), Expect = 5.672e-6 Identity = 45/209 (21.53%), Postives = 99/209 (47.37%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFV-VNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFYLDAKEELPKPAVIVGKSSKSLPPP 1743 + ++ I KQ +F+F DAN+ KD F+ ++++ + G++ ++ + F ++ KL+ D + A+ S V++ + + +RR+ P+ + R++++ LP+ + + +++VF + G V +++ Y D + +EF ++E A EF++ + EE P+ I K+ K+ P P Sbjct: 32 KQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDG-KLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVN-HSWIERVFGKCGNVVYISIPHY-----KSTGDPKGF------------AFVEFETKEQAAKAIEFLN-----------NPPEEAPRKPGIFPKTVKNKPIP 210
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Human
Match: LARP7 (La ribonucleoprotein 7, transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:24912]) HSP 1 Score: 51.6026 bits (122), Expect = 5.672e-6 Identity = 45/209 (21.53%), Postives = 99/209 (47.37%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFV-VNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFYLDAKEELPKPAVIVGKSSKSLPPP 1743 + ++ I KQ +F+F DAN+ KD F+ ++++ + G++ ++ + F ++ KL+ D + A+ S V++ + + +RR+ P+ + R++++ LP+ + + +++VF + G V +++ Y D + +EF ++E A EF++ + EE P+ I K+ K+ P P Sbjct: 32 KQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDG-KLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVN-HSWIERVFGKCGNVVYISIPHY-----KSTGDPKGF------------AFVEFETKEQAAKAIEFLN-----------NPPEEAPRKPGIFPKTVKNKPIP 210
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Fly
Match: Achl (gene:FBgn0033936 transcript:FBtr0345529) HSP 1 Score: 77.0258 bits (188), Expect = 4.588e-14 Identity = 49/189 (25.93%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 1114 PTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSND--DIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEF----NSREAMLSAGEFIHLKWAAVK 1662 P++ + I FYFS+ ++LKD F+LK ++ N G++SL V+ FK++ +L+ + + + V S +++++ + +RR P+P +D ++ R++ +LP + EK+ +F G + + R ++ +P D+R+ ++K P L + C ++E+ ++R+A G F + A K Sbjct: 277 PSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVGDAVRRK--SRKIELNDVGTKVRRIEPLPSFDETMPSRTIVACDLPLDKLTIEKVSDLFSPCGE--IALIRILKPGMAIPVDVRQFMNKYPELQQKECALVEYLESSSARDARHLNGPFQVYEMVAPK 461
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Fly
Match: Achl (gene:FBgn0033936 transcript:FBtr0087488) HSP 1 Score: 77.0258 bits (188), Expect = 4.588e-14 Identity = 49/189 (25.93%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 1114 PTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSND--DIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEF----NSREAMLSAGEFIHLKWAAVK 1662 P++ + I FYFS+ ++LKD F+LK ++ N G++SL V+ FK++ +L+ + + + V S +++++ + +RR P+P +D ++ R++ +LP + EK+ +F G + + R ++ +P D+R+ ++K P L + C ++E+ ++R+A G F + A K Sbjct: 277 PSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTREWKVVGDAVRRK--SRKIELNDVGTKVRRIEPLPSFDETMPSRTIVACDLPLDKLTIEKVSDLFSPCGE--IALIRILKPGMAIPVDVRQFMNKYPELQQKECALVEYLESSSARDARHLNGPFQVYEMVAPK 461
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Fly
Match: La (gene:FBgn0011638 transcript:FBtr0081374) HSP 1 Score: 64.6994 bits (156), Expect = 1.281e-10 Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 1135 SIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQ--VQISRDASSLRRR--LPIPDWDP----SIYIRSLFLWNLP 1428 +I++Q +YF DAN+ +D F+ +++ N GW+ L+ + FK+L LS D+ +V A+ S++ V+IS D SLRR PIP+ + I R+ + P Sbjct: 53 AIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLST-DLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFP 157
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Fly
Match: Larp7 (gene:FBgn0260771 transcript:FBtr0301275) HSP 1 Score: 53.5286 bits (127), Expect = 6.661e-7 Identity = 35/129 (27.13%), Postives = 66/129 (51.16%), Query Frame = 1 Query: 1036 EPAEQIHVMRLAPEELIYTFKEGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDW----DPSIYIRSL 1410 EPAE+ + APE+ K+G + + +SI Q FYF DAN+ KD F+ + ++ +P ++ L F ++ L+ D+ + A+ S +++ ++RR +PD D ++Y+ +L Sbjct: 30 EPAEE-NSKEPAPEDASPDKKDGGRKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDP--YVPLEIFLTFNKIKTLTQ-DVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLYVEAL 154
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Zebrafish
Match: larp6a (La ribonucleoprotein 6, translational regulator a [Source:ZFIN;Acc:ZDB-GENE-030131-6403]) HSP 1 Score: 77.411 bits (189), Expect = 1.988e-14 Identity = 54/200 (27.00%), Postives = 99/200 (49.50%), Query Frame = 1 Query: 1096 KEGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDW-DPSIYIRSLFLWNLPRICD----------------SYEKL-DQVFREEGRFVVNVS-RYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 +E + PP +I +V Q +Y SD N+ D F+LK ++ N G++S+ + FK++ L+ D YA+ +S+ ++++ + +RRR +P + S+ R L L L R + E+L + + + G + S R ++ +++PADL+KL + LG C ++EF EA + A E + Sbjct: 12 EESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTR-DWRTTAYALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSELKRWPELGIALGGDSNNGSGPTQQERLMELLLKAFGNYGPIASVRVLKPGKDLPADLKKLSGRYSQLGTEECAIVEFEEVEAAMKAHEAV 210
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Zebrafish
Match: larp6a (La ribonucleoprotein 6, translational regulator a [Source:ZFIN;Acc:ZDB-GENE-030131-6403]) HSP 1 Score: 77.411 bits (189), Expect = 2.173e-14 Identity = 54/200 (27.00%), Postives = 99/200 (49.50%), Query Frame = 1 Query: 1096 KEGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDW-DPSIYIRSLFLWNLPRICD----------------SYEKL-DQVFREEGRFVVNVS-RYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 +E + PP +I +V Q +Y SD N+ D F+LK ++ N G++S+ + FK++ L+ D YA+ +S+ ++++ + +RRR +P + S+ R L L L R + E+L + + + G + S R ++ +++PADL+KL + LG C ++EF EA + A E + Sbjct: 68 EESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTR-DWRTTAYALRHSNLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSELKRWPELGIALGGDSNNGSGPTQQERLMELLLKAFGNYGPIASVRVLKPGKDLPADLKKLSGRYSQLGTEECAIVEFEEVEAAMKAHEAV 266
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Zebrafish
Match: larp6b (La ribonucleoprotein 6, translational regulator b [Source:ZFIN;Acc:ZDB-GENE-041008-244]) HSP 1 Score: 76.6406 bits (187), Expect = 4.015e-14 Identity = 55/204 (26.96%), Postives = 92/204 (45.10%), Query Frame = 1 Query: 1093 FKEG--FLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFL-WNLPRICDSYEKLDQVFREEG----------------RFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLK 1647 F EG ++PP + I Q Y SD N+ D F+LK ++ N G++SL + FK++ L+ D + A S Q++++ + +RRR P+PDW I L L WN D + + F G ++ R +R + +PA+L++ K LG+ C V+E+ E A E + ++ Sbjct: 48 FCEGELWIPPNDDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTR-DWRTTLAAARTSLQLEVNEMGTKVRRRTPVPDWLLCIPTSKLLLAWNF---LDGAGPVKEKFESPGVEQLGIMEAAMRVFSPYGTISSLRILRPGKEIPAELKRYTKKHLELGRKVCAVVEYEYLEGARKAFEALKVE 247
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Zebrafish
Match: larp6b (La ribonucleoprotein 6, translational regulator b [Source:ZFIN;Acc:ZDB-GENE-041008-244]) HSP 1 Score: 51.6026 bits (122), Expect = 7.600e-7 Identity = 41/157 (26.11%), Postives = 71/157 (45.22%), Query Frame = 1 Query: 1225 GWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFL-WNL-------------PRI--CDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLK 1647 G++SL + FK++ L+ D + A S Q++++ + +RRR P+PDW I L L WN P + E +VF G ++ R +R + +PA+L++ K LG+ C V+E+ E A E + ++ Sbjct: 2 GYVSLKLLTSFKKIRDLTRD-WRTTLAAARTSLQLEVNEMGTKVRRRTPVPDWLLCIPTSKLLLAWNFLDGAGPVKEKFESPGVEQLGIMEAAMRVFSPYG--TISSLRILRPGKEIPAELKRYTKKHLELGRKVCAVVEYEYLEGARKAFEALKVE 155
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Zebrafish
Match: larp7 (La ribonucleoprotein 7, transcriptional regulator [Source:NCBI gene;Acc:334956]) HSP 1 Score: 52.7582 bits (125), Expect = 1.650e-6 Identity = 31/130 (23.85%), Postives = 73/130 (56.15%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFV-VNVSRY 1506 + ++ + KQ F+F D N+ KD F+ ++ + G+I +A + F ++ L+ D+ + A+ S V+++ + + +RR+ P+ + + R++++ LP+ ++ L++VF + G V +++ RY Sbjct: 40 KQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTA-DVKLIARALKNSTIVEVNDEGTRIRRKEPLGETPKDVDSRTVYVELLPKTV-THIWLERVFSKCGHVVYISIPRY 167
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Xenopus
Match: larp6-like.1 (acheron [Source:NCBI gene;Acc:780092]) HSP 1 Score: 88.9669 bits (219), Expect = 6.349e-18 Identity = 54/192 (28.12%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 1114 PTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSI-YIRSLFLWNL--PR----ICDS---YEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAV 1659 P ++ IV Q FY SD N+ D F+LK ++ N G++S+ + FK++ L+ D +YA+ +S+Q++++ + + +RR+ P+PD+ + + L +WN+ P C E + VF G ++ R ++ + VP+D+RK + + P L NC ++E+ S E A E + K ++ Sbjct: 75 PDLKLVRKIVSQVEFYLSDENLSHDAFLLKHVQKNKMGYVSIKLLTSFKKIKYLTR-DWRKTLYALRFSEQLEVNEEETKVRRKNPLPDYLLGLPPTKQLLVWNISDPEKRSFSCQQKNLMEIVTSVFATYG--LITSIRILKPGKEVPSDIRKYMSRYPELSTRNCALVEYESLEGARKALEALSGKVSST 263
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Xenopus
Match: shcbp1 (SHC SH2-domain binding protein 1 [Source:Xenbase;Acc:XB-GENE-5807675]) HSP 1 Score: 84.7297 bits (208), Expect = 2.034e-16 Identity = 51/195 (26.15%), Postives = 105/195 (53.85%), Query Frame = 1 Query: 1111 PPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRS--LFLWNLPRI----CDSYEK---------LDQVFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLK 1647 PP +I ++ Q +Y SD N+ KD F+LK ++ N G++S+ + FK++ L+ D YA+ YS+ ++++ D +RR+ P+P + PS + S L +++L I C E+ ++ + + G F V++ R ++ R++P+D+++ + +G +C ++EF EA + A + +++ Sbjct: 88 PPDAELIQKLITQIEYYLSDENLEKDAFLLKHVRRNKMGFVSVKLLTSFKKVKHLTR-DWRTTAYALRYSNLLELNEDNRKIRRKTPVPVF-PSENLPSKMLLVYDLHFIPELNCLGKEQENGGMQEKVMEHLLKSFGTFGVISSIRILKPGRDLPSDVKRFSSRYSQVGTKDCAIVEFEEVEAAIKAHDTFNVE 280
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Xenopus
Match: shcbp1 (SHC SH2-domain binding protein 1 [Source:Xenbase;Acc:XB-GENE-5807675]) HSP 1 Score: 83.5741 bits (205), Expect = 7.284e-16 Identity = 51/188 (27.13%), Postives = 101/188 (53.72%), Query Frame = 1 Query: 1111 PPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRS--LFLWNLPRI----CDSYEK---------LDQVFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSA 1626 PP +I ++ Q +Y SD N+ KD F+LK ++ N G++S+ + FK++ L+ D YA+ YS+ ++++ D +RR+ P+P + PS + S L +++L I C E+ ++ + + G F V++ R ++ R++P+D+++ + +G +C ++EF EA + A Sbjct: 370 PPDAELIQKLITQIEYYLSDENLEKDAFLLKHVRRNKMGFVSVKLLTSFKKVKHLTR-DWRTTAYALRYSNLLELNEDNRKIRRKTPVPVF-PSENLPSKMLLVYDLHFIPELNCLGKEQENGGMQEKVMEHLLKSFGTFGVISSIRILKPGRDLPSDVKRFSSRYSQVGTKDCAIVEFEEVEAAIKA 555
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:Xenbase;Acc:XB-GENE-1007558]) HSP 1 Score: 59.3066 bits (142), Expect = 1.747e-8 Identity = 35/131 (26.72%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPR-ICDSYEKLDQVFREEGRFV-VNVSRY 1506 + ++ I KQ +F+F D N+ KD F+ ++++ G+I ++ +A F ++ K++ D + A+ S V+I+ + +RRR P+ + + R++++ LP+ + S+ +++VF + G V V++ RY Sbjct: 34 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDS-KLIARAVKNSSVVEINLSGTKIRRRFPLGEKPQDVDSRTVYVELLPKNVTHSW--IERVFGKYGMVVYVSIPRY 161
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:Xenbase;Acc:XB-GENE-1007558]) HSP 1 Score: 58.9214 bits (141), Expect = 1.923e-8 Identity = 35/131 (26.72%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPR-ICDSYEKLDQVFREEGRFV-VNVSRY 1506 + ++ I KQ +F+F D N+ KD F+ ++++ G+I ++ +A F ++ K++ D + A+ S V+I+ + +RRR P+ + + R++++ LP+ + S+ +++VF + G V V++ RY Sbjct: 30 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDS-KLIARAVKNSSVVEINLSGTKIRRRFPLGEKPQDVDSRTVYVELLPKNVTHSW--IERVFGKYGMVVYVSIPRY 157
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Mouse
Match: Larp6 (La ribonucleoprotein domain family, member 6 [Source:MGI Symbol;Acc:MGI:1914807]) HSP 1 Score: 87.8113 bits (216), Expect = 1.205e-17 Identity = 55/191 (28.80%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 1111 PPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWD----PS----IYIRSLF--LWNL--PRICDSYEK--LDQVFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 PP + +I +V Q FYFSD N+ KD F+LK ++ N G++S+ + FK++ L+ D +A+ YS ++++ D +RR P+P + PS +Y L LW L P+ ++ ++ + + G F V++ R ++ R +P D+R++ + +G C ++EF +A + A EF+ Sbjct: 87 PPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTR-DWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFM 276
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Mouse
Match: Larp7 (La ribonucleoprotein domain family, member 7 [Source:MGI Symbol;Acc:MGI:107634]) HSP 1 Score: 52.7582 bits (125), Expect = 1.397e-6 Identity = 46/210 (21.90%), Postives = 100/210 (47.62%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPR-ICDSYEKLDQVFREEGRFV-VNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFYLDAKEELPKPAVIVGKSSKSLPPP 1743 + ++ I KQ +F+F DAN+ KD F+ ++++ + G++ ++ + F ++ KL+ D + A+ S V++ + + +RR+ P+ + R++++ LP+ + S+ +++VF + G V +++ Y D + +EF ++E A EF++ + EE P+ I K+ K+ P P Sbjct: 26 KQVLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDG-KLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEERTVYVELLPKNVTHSW--IERVFGKCGNVVYISIPHY-----KSTGDPKGFA------------FVEFETKEQAAKAIEFLN-----------NPPEEAPRKPGIFPKTVKNKPIP 204
BLAST of HTH La-type RNA-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9BRS8|LARP6_HUMAN (La-related protein 6 OS=Homo sapiens OX=9606 GN=LARP6 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.067e-17 Identity = 55/191 (28.80%), Postives = 102/191 (53.40%), Query Frame = 1 Query: 1111 PPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWD----PS--IYIRSLF----LWNL--PRICDSYEK--LDQVFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 PP + +I +V Q FYFSD N+ KD F+LK ++ N G++S+ + FK++ L+ D +A+ YS ++++ D +RR P+P + PS + + L+ LW L P+ ++ ++ + + G F V++ R ++ R +P D+R++ + +G C ++EF EA + A EF+ Sbjct: 87 PPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTR-DWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFM 276
BLAST of HTH La-type RNA-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8BN59|LARP6_MOUSE (La-related protein 6 OS=Mus musculus OX=10090 GN=Larp6 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.432e-17 Identity = 55/191 (28.80%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 1111 PPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWD----PS----IYIRSLF--LWNL--PRICDSYEK--LDQVFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 PP + +I +V Q FYFSD N+ KD F+LK ++ N G++S+ + FK++ L+ D +A+ YS ++++ D +RR P+P + PS +Y L LW L P+ ++ ++ + + G F V++ R ++ R +P D+R++ + +G C ++EF +A + A EF+ Sbjct: 87 PPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTR-DWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFM 276
BLAST of HTH La-type RNA-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q94A38|LRP6A_ARATH (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.800e-10 Identity = 39/128 (30.47%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 1099 EGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPD-WDPSIYIRSLFLWNLPRICDSYEKLDQVFREEG 1479 +G + P + I++Q +YFSD N+ D F+L +K N G++ ++T+A F ++ KL+ D +V A+ S + +S D ++R P+P+ DP I+ ++ + NLP S E + ++F + G Sbjct: 94 DGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHA-LIVSALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDH-SNENIREIFGKAG 217
BLAST of HTH La-type RNA-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|P40796|LA_DROME (La protein homolog OS=Drosophila melanogaster OX=7227 GN=La PE=1 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 1.284e-9 Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 1135 SIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQ--VQISRDASSLRRR--LPIPDWDP----SIYIRSLFLWNLP 1428 +I++Q +YF DAN+ +D F+ +++ N GW+ L+ + FK+L LS D+ +V A+ S++ V+IS D SLRR PIP+ + I R+ + P Sbjct: 53 AIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLST-DLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFP 157
BLAST of HTH La-type RNA-binding domain-containing protein vs. UniProt/SwissProt
Match: sp|Q28G87|LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 1.569e-7 Identity = 35/131 (26.72%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 1120 QSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPR-ICDSYEKLDQVFREEGRFV-VNVSRY 1506 + ++ I KQ +F+F D N+ KD F+ ++++ G+I ++ +A F ++ K++ D + A+ S V+I+ + +RRR P+ + + R++++ LP+ + S+ +++VF + G V V++ RY Sbjct: 34 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDS-KLIARAVKNSSVVEINLSGTKIRRRFPLGEKPQDVDSRTVYVELLPKNVTHSW--IERVFGKYGMVVYVSIPRY 161
BLAST of HTH La-type RNA-binding domain-containing protein vs. TrEMBL
Match: A0A504XAT4 (Lupus la ribonucleoprotein OS=Fasciola gigantica OX=46835 GN=FGIG_00939 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.309e-31 Identity = 71/185 (38.38%), Postives = 107/185 (57.84%), Query Frame = 1 Query: 1126 MIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLS-NDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICD-SYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFYL 1674 ++ I QC FYFSDAN+LKD F+LKK+K++ GW+ L V FK++ KL+ N I VV A+ SD++++S D S+RRR P+P+WDP++Y R+L + LP + D L + F +G + R+ R +P+DL++ P LG V+EF SREA A I + + +L Sbjct: 43 LLHQIAHQCEFYFSDANILKDQFLLKKVKTSKDGWVKLEVVEGFKKMQKLTKNHGI--VVKALALSDKLEVSEDGLSVRRRNPLPEWDPTVYYRTLIISELPSVDDIKLTSLTEFFTTQG-LPPTLLRFFAPGRKIPSDLKRSQAMHPFLGTKPSAVVEFGSREAASKALSVIRQRCSTAYIHFL 224
BLAST of HTH La-type RNA-binding domain-containing protein vs. TrEMBL
Match: H9LHW9 (La autoantigen-like protein (Fragment) OS=Crassostrea ariakensis OX=94323 PE=2 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 4.146e-29 Identity = 62/179 (34.64%), Postives = 109/179 (60.89%), Query Frame = 1 Query: 1105 FLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIH 1641 F+ P + + I+KQ FYFSDAN+LKD F+LK ++ N G++S+ + FK++ L+ D V Y++ +SD+++++ + +RR+ P+PDWD + RS+ + NLP + E + ++F + G V++ R +R ++VP D++K K P +G C V+EF EA +A E ++ Sbjct: 74 FVAPDDELKNRIIKQVEFYFSDANILKDAFLLKHVRRNKQGFVSIKLITSFKKVKSLTK-DYRVVAYSLRHSDKLEVNEEGRKVRRKDPLPDWDETTPSRSIVVVNLPMENPTIENVAEMFSKCGE--VSLIRILRPGKSVPQDVKKHATKHPEIGTTTCAVVEFEKHEAAKTACETMN 249
BLAST of HTH La-type RNA-binding domain-containing protein vs. TrEMBL
Match: A0A3S5C6R0 (HTH La-type RNA-binding domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS32462 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.110e-29 Identity = 67/177 (37.85%), Postives = 105/177 (59.32%), Query Frame = 1 Query: 1105 FLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRI---CDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSA 1626 F+ PT +++ I++QC FYFS+AN+LKD F+LKK KS+ GWI L+ + RF ++ ++S+D + +YA+ S ++IS + +RR P+PDWDPS+Y RS+ + P + DS L + R V R + R +PADL++ P LG C +IEF+SR+ + Sbjct: 88 FIAPTPGVVEKIIRQCEFYFSNANILKDPFLLKKAKSDKEGWIELSIIERFSRMRQISSDHL-TFLYALRQSKLLEISENGLMIRRIEPLPDWDPSVYNRSIIISKFPCVTVTVDSITDLFTICDLPPRLV----RVLSPQRRIPADLKRTQYFHPMLGVEMCAIIEFDSRDQAMEG 259
BLAST of HTH La-type RNA-binding domain-containing protein vs. TrEMBL
Match: A0A0R3SFJ2 (HTH La-type RNA-binding domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS3612 PE=4 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 4.045e-28 Identity = 64/164 (39.02%), Postives = 106/164 (64.63%), Query Frame = 1 Query: 1138 IVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNL-PRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSA 1626 I+KQ FYFSDAN+LKD +ILK +KSN GW+ L+TVA F+++ L++D+ D + + S+Q+++S D + +RRR P+P+WD S+Y RS+ + + P + ++ + F+ V + R I +R +P+DL K + + LGK C V+EF+++EA + A Sbjct: 50 ILKQIEFYFSDANILKDQYILKAVKSNKEGWVKLSTVAAFRRVQMLTSDE-DLIRKVLRRSEQLEVSEDGTRIRRRNPLPEWDRSVYQRSVLITHFKPNELVTISQIAKFFKAND-LCVTLVRIIDTNRPIPSDLIKTANHLGYLGKEKCAVVEFDTKEAAMKA 211
BLAST of HTH La-type RNA-binding domain-containing protein vs. TrEMBL
Match: A0A564YQ70 (HTH La-type RNA-binding domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS8362 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.432e-28 Identity = 64/164 (39.02%), Postives = 106/164 (64.63%), Query Frame = 1 Query: 1138 IVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNL-PRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSA 1626 I+KQ FYFSDAN+LKD +ILK +KSN GW+ L+TVA F+++ L++D+ D + + S+Q+++S D + +RRR P+P+WD S+Y RS+ + + P + ++ + F+ V + R I +R +P+DL K + + LGK C V+EF+++EA + A Sbjct: 52 ILKQIEFYFSDANILKDQYILKAVKSNKEGWVKLSTVAAFRRVQMLTSDE-DLIRKVLRRSEQLEVSEDGTRIRRRNPLPEWDRSVYQRSVLITHFKPNELVTISQIAKFFKAND-LCVTLVRIIDTNRPIPSDLIKTANHLGYLGKEKCAVVEFDTKEAAMKA 213
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Cavefish
Match: larp6b (la-related protein 6-like [Source:NCBI gene;Acc:103042034]) HSP 1 Score: 87.0409 bits (214), Expect = 1.501e-17 Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 1 Query: 1099 EGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFL-WNLPRICDSY----------EKLDQVFREEGRFV------VNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEF 1599 E + PP + I Q Y SD N+ D F+LK ++ N G++SL + FK++ +L+ D + A C S ++++ + +RRR P+P+W I L L WN I S E+L Q F E + + R +R + +PA+L++ K LG+ C V+E+ Sbjct: 52 EAWTPPPSELKLKIAAQLEHYLSDENLEGDAFLLKHIQRNKMGYVSLKLMTSFKKIRELTR-DWRTTLAAACTSHHLEVNEAGTKVRRRTPVPEWLLCIPTTKLLLAWNFQDIISSTEVENSGSSGAEQLQQDFMETAMSIFGSHGTITSLRILRPGKEIPAELKRYTKKHTELGRKLCAVVEY 234
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Cavefish
Match: larp6b (la-related protein 6-like [Source:NCBI gene;Acc:103042034]) HSP 1 Score: 87.0409 bits (214), Expect = 2.037e-17 Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 1 Query: 1099 EGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFL-WNLPRICDSY----------EKLDQVFREEGRFV------VNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEF 1599 E + PP + I Q Y SD N+ D F+LK ++ N G++SL + FK++ +L+ D + A C S ++++ + +RRR P+P+W I L L WN I S E+L Q F E + + R +R + +PA+L++ K LG+ C V+E+ Sbjct: 102 EAWTPPPSELKLKIAAQLEHYLSDENLEGDAFLLKHIQRNKMGYVSLKLMTSFKKIRELTR-DWRTTLAAACTSHHLEVNEAGTKVRRRTPVPEWLLCIPTTKLLLAWNFQDIISSTEVENSGSSGAEQLQQDFMETAMSIFGSHGTITSLRILRPGKEIPAELKRYTKKHTELGRKLCAVVEY 284
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000042251.1 (la-related protein 6-like [Source:NCBI gene;Acc:103023834]) HSP 1 Score: 77.411 bits (189), Expect = 1.546e-14 Identity = 51/192 (26.56%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 1105 FLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWD-PSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVS-----------RYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHL 1644 ++PP ++I +V Q Y SD N+ KD F+LK ++ N G++++ + FK++ L+ D YA+ +S +++++ + + +RR+ P+PD + + L +WN I DS D + ++ R R R +P +++K D+ P L K ++EF E SA + HL Sbjct: 25 WVPPNAALIKKMVSQIEHYLSDENLAKDAFLLKHVRRNKMGYVNIKLLTSFKKMKHLTK-DWRVTAYALHHSSKLEVNEEGNKVRRKDPVPDSVLAQVPSKLLLVWN---ITDSPAAEDTSVPHRSTMEMAIAMLEPFGSITTVRVNRPGRELPPEIQKYGDRYPELLKEESVLVEFEDLEGAGSA--YHHL 210
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Cavefish
Match: ENSAMXT00000047848.1 (la-related protein 6-like [Source:NCBI gene;Acc:103023834]) HSP 1 Score: 76.2554 bits (186), Expect = 4.106e-14 Identity = 51/192 (26.56%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 1105 FLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWD-PSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVS-----------RYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHL 1644 ++PP ++I +V Q Y SD N+ KD F+LK ++ N G++++ + FK++ L+ D YA+ +S +++++ + + +RR+ P+PD + + L +WN I DS D + ++ R R R +P +++K D+ P L K ++EF E SA + HL Sbjct: 53 WVPPNAALIKKMVSQIEHYLSDENLAKDAFLLKHVRRNKMGYVNIKLLTSFKKMKHLTK-DWRVTAYALHHSSKLEVNEEGNKVRRKDPVPDSVLAQVPSKLLLVWN---ITDSPAAEDTSVPHRSTMEMAIAMLEPFGSITTVRVNRPGRELPPEIQKYGDRYPELLKEESVLVEFEDLEGAGSA--YHHL 238
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Cavefish
Match: larp6a (La ribonucleoprotein 6, translational regulator [Source:NCBI gene;Acc:103040761]) HSP 1 Score: 71.633 bits (174), Expect = 2.104e-12 Identity = 51/203 (25.12%), Postives = 94/203 (46.31%), Query Frame = 1 Query: 1096 KEGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDW-DPSIYIRSLFLWNLPR----------------------ICDSYEKLDQVFREEGRFVVNVS-RYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGE 1632 +E + PP + +V Q +Y SD N+ D F+LK ++ N G++S+ + FK++ L+ D YA+ S+ ++++ + +RRR +P + S+ R L L L R + ++ + + G + S R ++ +++PADL+KL + LG C ++EF EA + A E Sbjct: 233 EESWQPPDPELTQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTR-DWRTTAYALRQSNLLELNDEGRKVRRRTSVPVFASESLPSRMLLLSELQRWPELGMALAGGGGAGDGSPGGGVAQQERLMELLLKAFGVYGPIASVRVLKPGKDLPADLKKLSGRYSQLGSEECAIVEFEEVEAAVRAHE 434
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Sea Lamprey
Match: larp7 (La ribonucleoprotein 7, transcriptional regulator [Source:NCBI gene;Acc:334956]) HSP 1 Score: 56.9954 bits (136), Expect = 1.133e-8 Identity = 36/128 (28.12%), Postives = 71/128 (55.47%), Query Frame = 1 Query: 1126 MIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFV-VNVSRY 1506 ++ I +Q F+F D N+ KD F+ + + ++P G++ L+ + F ++ LS DI+ + A+ S Q+++S D +RR P+ R++++ LP ++E L +VF GR + V++ R+ Sbjct: 46 ILSEIRRQIEFWFGDTNLHKDKFLRQVVDASPDGFVPLSVLMSFNRMKTLST-DINIIRRAVSTSTQLEVSSDGLKIRRSSPLGPKPEDEDERTVYVERLPHGV-THEWLSRVFSPCGRVLYVSLPRF 171
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Yeast
Match: LHP1 (RNA binding protein required for maturation of tRNA and U6 snRNA; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen [Source:SGD;Acc:S000002209]) HSP 1 Score: 54.299 bits (129), Expect = 2.417e-8 Identity = 27/86 (31.40%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 1117 TQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPI 1374 T ++D +KQ FYFS+ N D F+ + N GW+ ++T+A F ++ K +D V+ A+ S+ +++S D +++RR+P+ Sbjct: 26 TPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKYR--PVDKVIEALRSSEILEVSADGENVKRRVPL 108
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO33058 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7ST95]) HSP 1 Score: 72.4034 bits (176), Expect = 4.549e-13 Identity = 39/131 (29.77%), Postives = 87/131 (66.41%), Query Frame = 1 Query: 1117 TQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFV-VNVSRY 1506 T+ +++ + +Q +FYFSD+ +LKD F+ ++++++P G+++++T+A F ++ +++ DDI V AM S Q++++ D + +RR P+P ++ ++++ LP D ++ L +VF E G+ + V++ R+ Sbjct: 22 TKLLVNQLKEQIDFYFSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMT-DDIKLVKKAMKLSQQLELNEDGTMVRRMAPLPQ-PRNVDAETVYVEKLPFHAD-HDWLKKVFSEFGKVLYVSLPRF 149
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO45578 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RSK2]) HSP 1 Score: 65.4698 bits (158), Expect = 3.627e-11 Identity = 47/178 (26.40%), Postives = 86/178 (48.31%), Query Frame = 1 Query: 1105 FLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIP----DWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSA 1626 F PP + I Q FY SD N+ +D F+LK ++ N G+++L + FK++ L+ D V ++ S + ++ + + ++R P+ D +P + + + N S+E + ++F + G V + R IR + +P DL++ K P + VIEF + A A Sbjct: 73 FQPPNDELKARIKSQVEFYLSDDNLARDAFLLKHVRRNKEGYVNLKLITSFKKVKSLTK-DYRVVAESLKDSTMLSMNDENTKVKRNEPLRAELMDRNPGRTVVATNIEN-----PSFEHVSEMFSKCGEIV--LIRIIRGGKTIPPDLKEYESKFPENETF--AVIEFETMAAAARA 240
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Nematostella
Match: EDO45820 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RRT7]) HSP 1 Score: 52.373 bits (124), Expect = 4.211e-7 Identity = 34/125 (27.20%), Postives = 66/125 (52.80%), Query Frame = 1 Query: 1138 IVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAM--CYSDQVQISRDASSLRRRLPIPDWDPSIYIR------SLFLWNLPRICDSYEKLDQVFREEGRFV 1488 IVKQ FYF D N+ +D F+ +K + + GW++ +A F +L +S DD++ + M SD +++S D + +RR P + + R ++++ P+ + ++L + F +G+ V Sbjct: 23 IVKQIEFYFGDKNLPRDKFLRQKTEEDD-GWVTFECLATFNRLKSMS-DDVNFLAKTMKKSSSDLIEVSEDLTKVRRTKSKPVEELTTEARQKAKAKTVYVKGFPKEA-TLDELQEYFEGKGKIV 144
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Medaka
Match: larp6a (la-related protein 6-like [Source:NCBI gene;Acc:101166706]) HSP 1 Score: 83.1889 bits (204), Expect = 3.220e-16 Identity = 53/200 (26.50%), Postives = 102/200 (51.00%), Query Frame = 1 Query: 1096 KEGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDW-DPSIYIRSLFLWNLPRICD----------------SYEKLDQ-VFREEGRF-VVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFI 1638 +E + PP +I +V Q +Y SD N+ D F+LK ++ N G++S+ + FK++ L+ D YA+ +S ++++ + +RR+ +P + S+ R L L +L + D E+L + + +E G F ++ R ++ +++PADL++L + P LG C ++EF EA + A + + Sbjct: 85 EESWQPPDPELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTR-DWRTTAYALKHSKMLELNEEGRKVRRKSAVPVFASESLPSRMLLLSDLQKWPDLAVLTKENGSGEGGATQQEQLMKLLLKEFGTFGAISSVRVLKPGKDLPADLKRLSGRYPQLGADECAIVEFEEVEAAVKANDAV 283
BLAST of HTH La-type RNA-binding domain-containing protein vs. Planmine SMEST
Match: SMESG000000519.1 (SMESG000000519.1) HSP 1 Score: 1390.17 bits (3597), Expect = 0.000e+0 Identity = 711/741 (95.95%), Postives = 719/741 (97.03%), Query Frame = 1 Query: 76 MLSLKRNLEETIHKLSLNLSVIGVYCLPDSWKSISLISQDLKNLNVNFYTAFIVPTNSLVFKNSCHICQINXXXXXXXXXXXXXXIPNDEVSGVINKLNACYPEIKTLSICQVNLRKDLICPLMSEQQKERVEIVEKLVDVVENYFSDEEIHKNKDILVSMNSNGWVPLTVIENRLCELIIVNTREIVDKLRNSQTLQLDTTEKYVRRKQATLPVTTEHRQVVVLDIPDTIKSMRQLPTYLQLDGDSGVEYFDYSIHSAIVTLQSRQDAIRLVDEVQISGKMKAKLLVPSIVADDSSNVILSLSDVMDVDKVLASLALKHEPAEQIHVMRLAPEELIYTFKEGFLPPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFYLDAKEELPKPAVIVGKSSKSLPPPIPVSTFADNRVAALQAGTRIDPRFWQVARLLSAKKRNEMKIYTNDCDNGGVSRREIDTKLSKFNINNIREFPALGGSSSGTANKXXXXXXXXXXXXXXXXXXXXXXXXXNKSGRKMSPLKPINTNTEIDRSATAANEEEIGMRNRAAKSDSKGKKWRYRKNRSKSKPLAATNTENEGAVAAAVIG 2298 MLSLKRNLEETI KLSLNLSVIGVYCLPDSWKSISLISQDLKNLNVNFYTAFIVPTNSLVFKNSCHICQINYKS+YVYKYYLSLSIPNDEVSGVINKLNACYPEIKTLSICQVNLRKDLICPLMSEQQKERVEIVEKLVDVVENYFSDEEIHKNKDILVSMNSNGWVPLTVIEN+LCELIIVNTREIV+KLRNSQTLQLDTTEKYVRRKQATLPVT EHRQVVVLDIPDTIKSMRQLPTYLQLDGDSGVEYFDYSIHSAIVTLQSRQDAIRLVDEVQISGKMKAKLLVPSIVADDSSNVILSLSDVMDVDKVLASLALKHEP EQIHVMRLAPEELIYTFK GFL PTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTF+LDAKEELPKPAVIVGKSSKSLPPPIPVSTFADNRVAALQAGTRIDPRFWQVARLLSAKKRNEMKIYTNDCDNGGVSRREIDTKLSKFNINNIREFPALGGSSSGTANK + + RGT TRGSGTANRNKSGRKMSPLKPINTNTEIDRSATAA EEEIGMRNR +K DSK KKWRYR NRSKSKP+ ATNTENEGAVAAAVIG Sbjct: 1 MLSLKRNLEETIDKLSLNLSVIGVYCLPDSWKSISLISQDLKNLNVNFYTAFIVPTNSLVFKNSCHICQINYKSIYVYKYYLSLSIPNDEVSGVINKLNACYPEIKTLSICQVNLRKDLICPLMSEQQKERVEIVEKLVDVVENYFSDEEIHKNKDILVSMNSNGWVPLTVIENKLCELIIVNTREIVEKLRNSQTLQLDTTEKYVRRKQATLPVTAEHRQVVVLDIPDTIKSMRQLPTYLQLDGDSGVEYFDYSIHSAIVTLQSRQDAIRLVDEVQISGKMKAKLLVPSIVADDSSNVILSLSDVMDVDKVLASLALKHEPTEQIHVMRLAPEELIYTFKPGFLAPTQSMIDSIVKQCNFYFSDANVLKDLFILKKLKSNPGGWISLATVARFKQLVKLSNDDIDNVVYAMCYSDQVQISRDASSLRRRLPIPDWDPSIYIRSLFLWNLPRICDSYEKLDQVFREEGRFVVNVSRYIRADRNVPADLRKLVDKIPALGKYNCGVIEFNSREAMLSAGEFIHLKWAAVKTFFLDAKEELPKPAVIVGKSSKSLPPPIPVSTFADNRVAALQAGTRIDPRFWQVARLLSAKKRNEMKIYTNDCDNGGVSRREIDTKLSKFNINNIREFPALGGSSSGTANK----VSGSGKANRGTTTRGSGTANRNKSGRKMSPLKPINTNTEIDRSATAATEEEIGMRNRPSKFDSKRKKWRYRNNRSKSKPIVATNTENEGAVAAAVIG 737 The following BLAST results are available for this feature:
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 4
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of HTH La-type RNA-binding domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of HTH La-type RNA-binding domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of HTH La-type RNA-binding domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of HTH La-type RNA-binding domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30011104 ID=SMED30011104|Name=HTH La-type RNA-binding domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2389bpback to top protein sequence of SMED30011104-orf-1 >SMED30011104-orf-1 ID=SMED30011104-orf-1|Name=SMED30011104-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=742bp MLSLKRNLEETIHKLSLNLSVIGVYCLPDSWKSISLISQDLKNLNVNFYTback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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