SMED30011056

Overview
NameSMED30011056
Smed IDSMED30011056
Length (bp)732
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30011056 (SMED30011056) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30011056 (SMED30011056) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30011056 (SMED30011056) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30011056 (SMED30011056) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30011056

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
neoblastSMED30011056SMESG000009090.1 dd_Smed_v4_2432_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30011056SMESG000009090.1 dd_Smed_v4_2432_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30011056 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003075:47974..48973 -3641
Homology
[Close]
BLAST of SMED30011056 vs. TrEMBL
Match: A0A368FHD9 (Uncharacterized protein (Fragment) OS=Ancylostoma caninum OX=29170 GN=ANCCAN_22634 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.899e-12
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 3 
Query:  240 QSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIR 617
            Q++  V  + ++  NA++Q  RRQNE   +   R+  N+++Q  RR NE   + S R+  NA+RQ +RRQ+E  E+ + R   NAERQ  RRLNE  E+   RR  +A+RQ RRRQNE++E+ + R
Sbjct:   65 QNENDVQISARRAANAEQQRHRRQNENDVQVSARRAANAEQQRHRRQNENDVQISARRAANAQRQQIRRQSEDVEQRSARLLTNAERQRRRRLNEDNEQRTARRVAHADRQQRRRQNESAEQRSAR 190

HSP 2 Score: 71.2478 bits (173), Expect = 1.545e-10
Identity = 55/152 (36.18%), Postives = 92/152 (60.53%), Query Frame = 3 
Query:  186 SNNSDELQINFDGNQQFN--QSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            +N+++ L+ + +  QQ +  Q++  V  + ++  NA++Q  RRQNE   +   R+  N+++Q  RR NE   + S R+  NAE+Q  RRQNE   + + R+  NA+RQ +RR +E  E+ + R   NAERQ RRR NE +E+   R+ ++A+
Sbjct:   22 ANSAERLRSHPNAEQQRHRRQNENDVQISARRAANAEQQRHRRQNENDVQISARRAANAEQQRHRRQNENDVQVSARRAANAEQQRHRRQNENDVQISARRAANAQRQQIRRQSEDVEQRSARLLTNAERQRRRRLNEDNEQRTARRVAHAD 173

HSP 3 Score: 63.5438 bits (153), Expect = 6.115e-8
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = 3 
Query:  240 QSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNA 632
            Q++  V  + ++  NA RQ  RRQ+E  E+   R   N++RQ  RRLNE  E+ + R+  +A+RQ  RRQNE+ E+ + R   N ER+  RR +E  E+ ++R   NAERQ R+RQNE+ E+ + R+  NA
Sbjct:  111 QNENDVQISARRAANAQRQQIRRQSEDVEQRSARLLTNAERQRRRRLNEDNEQRTARRVAHADRQQRRRQNESAEQRSARLLGNVERERRRRQSEDTEQRSVRLLANAERQQRQRQNESVEQRSARRPMNA 241

HSP 4 Score: 62.3882 bits (150), Expect = 1.629e-7
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 3 
Query:  240 QSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            Q++  V  + ++  NA++Q  RRQNE   +   R+  N+QRQ  RR +E  E+ S R   NAERQ  RR NE  E+   R+  +A+RQ  RR NE+ E+ + R   N ER+ RRRQ+E +E+ ++R  +NAE
Sbjct:   88 QNENDVQVSARRAANAEQQRHRRQNENDVQISARRAANAQRQQIRRQSEDVEQRSARLLTNAERQRRRRLNEDNEQRTARRVAHADRQQRRRQNESAEQRSARLLGNVERERRRRQSEDTEQRSVRLLANAE 219

HSP 5 Score: 57.3806 bits (137), Expect = 9.464e-6
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 3 
Query:  270 KKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRS 626
            +++ +ADRQ +RRQNE++E+   R   N +R+  RR +E  E+ SVR   NAERQ  +RQNE+ E+ + R+ +NA RQ  RR NE   +   R R +A R +RRR N+ ++   +  RS
Sbjct:  167 RRVAHADRQQRRRQNESAEQRSARLLGNVERERRRRQSEDTEQRSVRLLANAERQQRQRQNESVEQRSARRPMNAARQQRRRQNEGVAQRNERLRNDAVRHYRRR-NDAADTTGLALRS 284
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BLAST of SMED30011056 vs. TrEMBL
Match: A0A0L7LHT3 (RING-type domain-containing protein OS=Operophtera brumata OX=104452 GN=OBRU01_06817 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 9.862e-11
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 3 
Query:  270 KKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNA 632
            ++ LNA+R   +R +ET+EE  VR++  +      R +E  EEA+ R++ NAER   +  +ET EE A+R++  A      R +E PEE A RR+ NAER   +R +ET+EE A+R++  A
Sbjct:  193 RRQLNAERMDSQRASETAEETTVRRQQLAACMASHRASEVTEEAASRRQENAERMASQGASETAEETAVRRQQVAACMASHRASEVPEEVASRRQENAERMASQRASETAEETAVRRQQVA 313

HSP 2 Score: 70.0922 bits (170), Expect = 4.745e-10
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 3 
Query:  240 QSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            Q + SV    +++  A+RQ+  R  ETS + + R++LN++R   +R +ET EE +VR++  A      R +E  EEAA R++ NAER   +  +ET EETA+RR+  A      R +E  EE A R++ NAE
Sbjct:  160 QQESSVHAEQRRIEQAERQANVRAAETSTQADARRQLNAERMDSQRASETAEETTVRRQQLAACMASHRASEVTEEAASRRQENAERMASQGASETAEETAVRRQQVAACMASHRASEVPEEVASRRQENAE 291

HSP 3 Score: 59.3066 bits (142), Expect = 1.770e-6
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:  282 NADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQ 587
            NA+R + +  +ET+EE  VR++  +      R +E PEE + R++ NAER   +R +ET EE A+R++  A     +R +ET EE   RR   AERQ  RRQ
Sbjct:  243 NAERMASQGASETAEETAVRRQQVAACMASHRASEVPEEVASRRQENAERMASQRASETAEETAVRRQQVAACMASQRASETFEEADTRRHAVAERQAERRQ 344
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BLAST of SMED30011056 vs. TrEMBL
Match: A0A2G9UDE8 (Uncharacterized protein OS=Teladorsagia circumcincta OX=45464 GN=TELCIR_09942 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.192e-10
Identity = 57/113 (50.44%), Postives = 66/113 (58.41%), Query Frame = 3 
Query:  276 MLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAI 614
            M +A RQ  RR  ET EE   R   N+ RQ  RR  ET EE +VR   +A RQ  RR  ETPEE  IR   NA RQ  RRL ETPEE ++R   +A RQ +RR  ETSEE  +
Sbjct:    1 MKDALRQRSRRLEETLEEQTARLEKNAARQRQRRSAETAEERAVRLAEDAARQRKRRLLETPEERCIRLAGNAARQRWRRLLETPEEQSVRLAESAVRQRQRRGPETSEEEPV 113
[Close]
BLAST of SMED30011056 vs. TrEMBL
Match: A0A0C2GQ68 (Helitron_like_N domain-containing protein OS=Ancylostoma duodenale OX=51022 GN=ANCDUO_08493 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.393e-10
Identity = 55/121 (45.45%), Postives = 74/121 (61.16%), Query Frame = 3 
Query:  270 KKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNA 632
            +++ NA+RQ +RRQNE  EE   R   N++RQ  RR N   EE S R   NAERQ   RQ+E  ++ + R R NAERQ  RR NE  ++   RR  N ERQ R RQNE ++  ++R++ NA
Sbjct:   92 RRLANAERQQRRRQNENIEERSARLAANAERQQRRRQNGDFEERSARLAANAERQQRLRQSEDVQQRSERLRANAERQRERRQNEDADQRIARRPANVERQQRLRQNEDADSISMRRQVNA 212

HSP 2 Score: 70.8626 bits (172), Expect = 2.494e-10
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 3 
Query:  282 NADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            +A R  + R+ ET++E  VR   N+++Q  RRL E+ E+AS R+  NAERQ  RRQNE  EE + R   NAERQ  RR N   EE + R   NAERQ R RQ+E  ++ + R R+NAE
Sbjct:   50 DAQRVRRHRERETAQERNVRVNSNAEQQRRRRLGESTEQASARRLANAERQQRRRQNENIEERSARLAANAERQQRRRQNGDFEERSARLAANAERQQRLRQSEDVQQRSERLRANAE 167

HSP 3 Score: 68.1662 bits (165), Expect = 2.135e-9
Identity = 53/118 (44.92%), Postives = 72/118 (61.02%), Query Frame = 3 
Query:  282 NADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            NA++Q +RR  E++E+   R+  N++RQ  RR NE  EE S R   NAERQ  RRQN   EE + R   NAERQ   R +E  ++ + R R NAERQ  RRQNE +++   R+ +N E
Sbjct:   73 NAEQQRRRRLGESTEQASARRLANAERQQRRRQNENIEERSARLAANAERQQRRRQNGDFEERSARLAANAERQQRLRQSEDVQQRSERLRANAERQRERRQNEDADQRIARRPANVE 190

HSP 4 Score: 62.7734 bits (151), Expect = 1.626e-7
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 3 
Query:  282 NADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            NA+RQ +RRQN   EE   R   N++RQ   R +E  ++ S R + NAERQ  RRQNE  ++   R+  N ERQ   R NE  +  ++RR++NA RQ   RQNE  ++ A R R++AE
Sbjct:  119 NAERQQRRRQNGDFEERSARLAANAERQQRLRQSEDVQQRSERLRANAERQRERRQNEDADQRIARRPANVERQQRLRQNEDADSISMRRQVNAARQRLLRQNEEDDQRAQRLRNDAE 236
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BLAST of SMED30011056 vs. TrEMBL
Match: B0WPV7 (Uncharacterized protein OS=Culex quinquefasciatus OX=7176 GN=6041490 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.083e-10
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 3 
Query:  180 DISNNSDELQINFDGNQQFNQSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAE 635
            D +N+S    +     +   +S+ + A+ + K  NA+R  ++R NET EE ++R   N++    RR NET  E ++R   NA RQ LRR  ETPE+ AIRK   A+R    R NETPE+  +R    A R   +   ETSEE A R R  AE
Sbjct:   69 DATNDSSGTSLTKAQRRLLGESEAARAKRLAK--NAERMRQKRSNETYEEYKIRLAKNAEANRRRRANETEAERALRHMRNAMRQRLRRAMETPEQKAIRKARLAQRMREIRANETPEQRKVRLEKGAARARHKFLTETSEERAERNRKKAE 218
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BLAST of SMED30011056 vs. Planmine SMEST
Match: SMESG000009090.1 (SMESG000009090.1)

HSP 1 Score: 355.14 bits (910), Expect = 6.906e-126
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 3 
Query:  114 MNNYAGQSFSSDLDNCLKTGSNDISNNSDELQINFDGNQQFNQSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAEXXXXXXXXXXXXXXKCSVPQP 698
            MNNYAGQSFSSDLDNCLKTGSNDISNNSDELQINFDGNQQFNQSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAERQLLRRQSQNSRNLKCSVPQP
Sbjct:    1 MNNYAGQSFSSDLDNCLKTGSNDISNNSDELQINFDGNQQFNQSDKSVAQAIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRKKLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNAERQFRRRQNETSEEAAIRKRSNAERQLLRRQSQNSRNLKCSVPQP 195
The following BLAST results are available for this feature:
BLAST of SMED30011056 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A368FHD91.899e-1242.06Uncharacterized protein (Fragment) OS=Ancylostoma ... [more]
A0A0L7LHT39.862e-1139.67RING-type domain-containing protein OS=Operophtera... [more]
A0A2G9UDE81.192e-1050.44Uncharacterized protein OS=Teladorsagia circumcinc... [more]
A0A0C2GQ681.393e-1045.45Helitron_like_N domain-containing protein OS=Ancyl... [more]
B0WPV74.083e-1039.47Uncharacterized protein OS=Culex quinquefasciatus ... [more]
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BLAST of SMED30011056 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30011056 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000009090.16.906e-126100.00SMESG000009090.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30011056 ID=SMED30011056|Name=SMED30011056|organism=Schmidtea mediterranea sexual|type=transcript|length=732bp
ATTAAATTATTTTCATTTGAAATTTATAATTTTAAATAAAAATTTTTCTA
GGAGTTCAAGTTTTATATGCTGTTAGATTTGTTCAAATTCTAAGGATTTT
ATTCGATTTAATAATGAACAATTATGCTGGGCAATCATTCTCCAGTGACC
TAGATAATTGCTTGAAAACTGGTTCCAATGATATTTCCAATAATTCTGAT
GAATTACAAATAAATTTTGATGGTAATCAGCAATTTAATCAAAGTGACAA
ATCGGTTGCTCAGGCAATTAAAAAAATGTTAAATGCTGATAGGCAATCTA
AAAGAAGACAGAATGAAACATCAGAGGAATGCGAAGTTAGAAAGCGCTTA
AACTCACAGCGACAATATTTTAGAAGACTCAATGAAACTCCCGAAGAAGC
TTCAGTGCGTAAAAAGCTTAACGCCGAAAGGCAATGGTTAAGACGACAAA
ATGAAACTCCCGAAGAAGCGGCAATTAGGAAACGATTAAATGCAGAGCGG
CAATATTTAAGGAGACTAAATGAAACTCCCGAAGAAACAGCAATTAGGCG
TCGGCTGAATGCGGAAAGACAATTTAGAAGAAGACAGAATGAAACCTCAG
AGGAAGCGGCAATCAGGAAAAGGTCAAATGCCGAGCGACAATTGCTTAGG
AGGCAAAGTCAGAATTCGCGAAATCTGAAATGCAGTGTTCCTCAGCCGTA
ATATTGGATATATAATGAATTGCTTTTTATGT
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protein sequence of SMED30011056-orf-1

>SMED30011056-orf-1 ID=SMED30011056-orf-1|Name=SMED30011056-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=196bp
MNNYAGQSFSSDLDNCLKTGSNDISNNSDELQINFDGNQQFNQSDKSVAQ
AIKKMLNADRQSKRRQNETSEECEVRKRLNSQRQYFRRLNETPEEASVRK
KLNAERQWLRRQNETPEEAAIRKRLNAERQYLRRLNETPEETAIRRRLNA
ERQFRRRQNETSEEAAIRKRSNAERQLLRRQSQNSRNLKCSVPQP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0044212transcription regulatory region DNA binding
Vocabulary: biological process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..195
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..76