60S ribosomal protein L44

Overview


Name	60S ribosomal protein L44
Smed ID	SMED30011003
Length (bp)	454

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 60S ribosomal protein L44 (SMED30011003) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L44 (SMED30011003) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L44 (SMED30011003) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L44 (SMED30011003) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30011003

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Expressed In	Reference Transcript	Published Transcript	Transcriptome	Publication
X1 cell	SMED30011003	SmedASXL_003679	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
body wall musculature	SMED30011003	dd_Smed_v4_64_0_1	dd_Smed_v4	PMID:30471994 Scimone et al., 2018
neoblast	SMED30011003	dd_Smed_v6_64_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Human
Match: RPL36A (ribosomal protein L36a [Source:HGNC Symbol;Acc:HGNC:10359])

HSP 1 Score: 170.244 bits (430), Expect = 9.219e-55
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   37 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 142

[Close]

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   37 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 142

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Human
Match: RPL36A (ribosomal protein L36a [Source:HGNC Symbol;Acc:HGNC:10359])

HSP 1 Score: 168.318 bits (425), Expect = 1.669e-54
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Human
Match: RPL36AL (ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346])

HSP 1 Score: 167.933 bits (424), Expect = 2.918e-54
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQG+RRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Human
Match: RPL36A-HNRNPH2 (RPL36A-HNRNPH2 readthrough [Source:HGNC Symbol;Acc:HGNC:48349])

HSP 1 Score: 157.918 bits (398), Expect = 3.220e-50
Identity = 81/102 (79.41%), Postives = 90/102 (88.24%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKK 393
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+K
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 100

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Celegans
Match: rpl-36.A (Ribosomal protein rpl-36.A [Source:UniProtKB/Swiss-Prot;Acc:P48166])

HSP 1 Score: 170.244 bits (430), Expect = 1.289e-55
Identity = 83/106 (78.30%), Postives = 94/106 (88.68%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK R+TFC + KC++HT HKVTQYK GK S +AQG+RRYDRKQSG+GGQTKPIFRKKAKTTKKIVLRMEC  CKHKKQ+ IKRCKHFELGG KK +GQ+IQF
Sbjct:    1 MVNVPKARRTFC-DGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105

[Close]

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK R+TFC + KC++HT HKVTQYK GK S +AQG+RRYDRKQSG+GGQTKPIFRKKAKTTKKIVLRMEC  CKHKKQ+ IKRCKHFELGG KK +GQ+IQF
Sbjct:    1 MVNVPKARRTFC-DGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Fly
Match: RpL36A (gene:FBgn0031980 transcript:FBtr0079546)

HSP 1 Score: 160.999 bits (406), Expect = 5.794e-52
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK R+TFCK  KCK H +HKVTQYK  K    AQG+RRYDRKQ G+GGQTKPIFRKKAKTTKKIVLRMEC  CK++KQ  +KRCKHFELGGDKK+KGQMIQF
Sbjct:    1 MVNVPKQRRTFCK--KCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQMIQF 104

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Fly
Match: RpL36A (gene:FBgn0031980 transcript:FBtr0345332)

HSP 1 Score: 160.999 bits (406), Expect = 5.794e-52
Identity = 81/106 (76.42%), Postives = 90/106 (84.91%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK R+TFCK  KCK H +HKVTQYK  K    AQG+RRYDRKQ G+GGQTKPIFRKKAKTTKKIVLRMEC  CK++KQ  +KRCKHFELGGDKK+KGQMIQF
Sbjct:    1 MVNVPKQRRTFCK--KCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQMIQF 104

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
Match: rpl36a (ribosomal protein L36A [Source:NCBI gene;Acc:195819])

HSP 1 Score: 169.088 bits (427), Expect = 4.878e-55
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
Match: rpl36a (ribosomal protein L36A [Source:NCBI gene;Acc:195819])

HSP 1 Score: 168.318 bits (425), Expect = 2.076e-54
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 1

Query:   97 VNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            VN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   24 VNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 128

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
Match: rpl36a (ribosomal protein L36A [Source:NCBI gene;Acc:195819])

HSP 1 Score: 166.777 bits (421), Expect = 9.446e-54
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 1

Query:   97 VNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            VN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   29 VNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 133

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
Match: rpl36a (ribosomal protein L36A [Source:NCBI gene;Acc:195819])

HSP 1 Score: 166.007 bits (419), Expect = 6.402e-53
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 1

Query:   97 VNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            VN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   61 VNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 165

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
Match: rpl36a (ribosomal protein L36A [Source:NCBI gene;Acc:195819])

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-17
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1

Query:  277 AKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            AKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    9 AKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 55

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Xenopus
Match: rpl36a (ribosomal protein L36a [Source:NCBI gene;Acc:448673])

HSP 1 Score: 167.548 bits (423), Expect = 3.083e-54
Identity = 85/108 (78.70%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCGRHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVDSNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCGRHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVDSNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Mouse
Match: Rpl36al (ribosomal protein L36A-like [Source:MGI Symbol;Acc:MGI:1913733])

HSP 1 Score: 168.318 bits (425), Expect = 1.146e-54
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Mouse
Match: Rpl36a (ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789])

HSP 1 Score: 168.318 bits (425), Expect = 1.146e-54
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KC +H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Mouse
Match: Rpl36a-ps1 (ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585])

HSP 1 Score: 162.155 bits (409), Expect = 3.156e-52
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK R+TFCK  KC +H  HKVTQYK GK SLYAQGK+RYDRKQS YGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKIRRTFCK--KCGKHQPHKVTQYKKGKDSLYAQGKQRYDRKQSSYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
Match: sp|P48166|RL36A_CAEEL (Ribosomal protein rpl-36.A OS=Caenorhabditis elegans OX=6239 GN=rpl-36.A PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.640e-54
Identity = 83/106 (78.30%), Postives = 94/106 (88.68%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK R+TFC + KC++HT HKVTQYK GK S +AQG+RRYDRKQSG+GGQTKPIFRKKAKTTKKIVLRMEC  CKHKKQ+ IKRCKHFELGG KK +GQ+IQF
Sbjct:    1 MVNVPKARRTFC-DGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105

[Close]

BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
Match: sp|P61486|RL36A_TAKRU (60S ribosomal protein L36a OS=Takifugu rubripes OX=31033 GN=rpl36a PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.683e-54
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
Match: sp|P61487|RL36A_ICTPU (60S ribosomal protein L36a OS=Ictalurus punctatus OX=7998 GN=rpl36a PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.683e-54
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
Match: sp|P61485|RL36A_DANRE (60S ribosomal protein L36a OS=Danio rerio OX=7955 GN=rpl36a PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.683e-54
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
Match: sp|P90702|RL44_BRUMA (60S ribosomal protein L44 OS=Brugia malayi OX=6279 GN=rpl-44 PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 6.963e-54
Identity = 82/106 (77.36%), Postives = 93/106 (87.74%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFC + KC++HTMHKVTQYK GK S  AQG+RRYD KQ G+GGQTKPIFRKKAKTTKKIVLRMEC  CKH+KQ+ IKRCKHFELGG KK +GQ+IQF
Sbjct:    1 MVNVPKTRRTFC-DGKCRRHTMHKVTQYKKGKESRLAQGRRRYDSKQKGFGGQTKPIFRKKAKTTKKIVLRMECTECKHRKQLPIKRCKHFELGGQKKTRGQVIQF 105

[Close]

BLAST of 60S ribosomal protein L44 vs. TrEMBL
Match: A0A504YIE6 (Ribosomal protein L44 OS=Fasciola gigantica OX=46835 GN=FGIG_04833 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.650e-62
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVNIPK+R+TFC +SKCK+HT+HKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPI RKKAKTTKKIVLRMEC  CK+KKQ+AIKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MVNIPKSRRTFCASSKCKKHTLHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPILRKKAKTTKKIVLRMECSVCKYKKQLAIKRCKHFELGGDKKKKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. TrEMBL
Match: A0A2H1BRD0 (Ribosomal protein L44 OS=Fasciola hepatica OX=6192 GN=D915_011006 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.650e-62
Identity = 95/106 (89.62%), Postives = 102/106 (96.23%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVNIPK+R+TFC +SKCK+HT+HKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPI RKKAKTTKKIVLRMEC  CK+KKQ+AIKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MVNIPKSRRTFCASSKCKKHTLHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPILRKKAKTTKKIVLRMECSVCKYKKQLAIKRCKHFELGGDKKKKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. TrEMBL
Match: A0A0X3P0J0 (60S ribosomal protein L36a OS=Schistocephalus solidus OX=70667 GN=RL36A PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.246e-62
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVNIPKTRKTFCK+SKCK+HT+HKV+QYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC  CK+K+Q+ IKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MVNIPKTRKTFCKSSKCKKHTLHKVSQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECTECKYKQQLRIKRCKHFELGGDKKKKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. TrEMBL
Match: A0A3P7NA03 (Uncharacterized protein OS=Dibothriocephalus latus OX=60516 GN=DILT_LOCUS17163 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.598e-62
Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVNIPKTRKTFCK+SKCK+HT+HKV+QYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC  CK+K+Q+ IKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MVNIPKTRKTFCKSSKCKKHTLHKVSQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECTECKYKQQLKIKRCKHFELGGDKKKKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. TrEMBL
Match: A0A5J4N341 (Large subunit ribosomal protein L44e OS=Paragonimus westermani OX=34504 GN=DEA37_0010051 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.105e-61
Identity = 96/106 (90.57%), Postives = 102/106 (96.23%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVNIPK+R+TFC +SKCK+HT+HKVTQYKAGKASL+AQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC  CK KKQIAIKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MVNIPKSRRTFCASSKCKKHTIHKVTQYKAGKASLHAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECSQCKFKKQIAIKRCKHFELGGDKKKKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Cavefish
Match: rpl36a (60S ribosomal protein L36a [Source:NCBI gene;Acc:103023967])

HSP 1 Score: 169.088 bits (427), Expect = 4.134e-55
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:    1 MVNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Cavefish
Match: rpl36a (60S ribosomal protein L36a [Source:NCBI gene;Acc:103023967])

HSP 1 Score: 167.162 bits (422), Expect = 5.628e-54
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 1

Query:   97 VNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            VN+PKTR+T+CK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   22 VNVPKTRRTYCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 126

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Cavefish
Match: ENSAMXT00000030450.1 (pep primary_assembly:Astyanax_mexicanus-2.0:5:27685775:27689805:1 gene:ENSAMXG00000040813.1 transcript:ENSAMXT00000030450.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.0922 bits (170), Expect = 1.484e-16
Identity = 34/52 (65.38%), Postives = 45/52 (86.54%), Query Frame = 1

Query:  262 IFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            ++ KK+KTTKKIVL +EC   +C+ K+ +AIKRCKHFELGGDKK+KG++IQF
Sbjct:   19 LWVKKSKTTKKIVLWLECVQPNCRSKRILAIKRCKHFELGGDKKRKGKVIQF 70

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Yeast
Match: RPL42A (Ribosomal 60S subunit protein L42A; homologous to mammalian ribosomal protein L36A, no bacterial homolog; RPL42A has a paralog, RPL42B, that arose from the whole genome duplication [Source:SGD;Acc:S000005106])

HSP 1 Score: 153.295 bits (386), Expect = 9.610e-50
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTRKT+CK   C++HT HKVTQYKAGKASL+AQGKRRYDRKQSG+GGQTKP+F KKAKTTKK+VLR+EC  CK + Q+ +KRCKHFELGG+KK+KGQ +QF
Sbjct:    1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Yeast
Match: RPL42B (Ribosomal 60S subunit protein L42B; required for propagation of the killer toxin-encoding M1 double-stranded RNA satellite of the L-A double-stranded RNA virus; homologous to mammalian ribosomal protein L36A, no bacterial homolog; RPL42B has a paralog, RPL42A, that arose from the whole genome duplication [Source:SGD;Acc:S000001183])

HSP 1 Score: 153.295 bits (386), Expect = 9.610e-50
Identity = 80/106 (75.47%), Postives = 95/106 (89.62%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTRKT+CK   C++HT HKVTQYKAGKASL+AQGKRRYDRKQSG+GGQTKP+F KKAKTTKK+VLR+EC  CK + Q+ +KRCKHFELGG+KK+KGQ +QF
Sbjct:    1 MVNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGEKKQKGQALQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Nematostella
Match: EDO38414 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD22])

HSP 1 Score: 181.8 bits (460), Expect = 1.717e-60
Identity = 86/106 (81.13%), Postives = 98/106 (92.45%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PK RKTFCK  KC++HT+HKVTQYK GKASL+AQGKRRYDRKQSG+GGQTKP+F KKAKTTKKIVLRMEC  CK++KQ+ +KRCKHFELGGDKK+KGQMIQF
Sbjct:    1 MVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Nematostella
Match: EDO38415 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD23])

HSP 1 Score: 77.0258 bits (188), Expect = 7.322e-20
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1

Query:  277 AKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            AKTTKKIVLRMEC  CK++KQ+ +KRCKHFELGGDKK KGQMIQF
Sbjct:   15 AKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKCKGQMIQF 59

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Medaka
Match: RPL36A (60S ribosomal protein L36a [Source:NCBI gene;Acc:101168792])

HSP 1 Score: 171.014 bits (432), Expect = 3.427e-55
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   41 MVNVPKTRRTFCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 146

[Close]

BLAST of 60S ribosomal protein L44 vs. Ensembl Medaka
Match: RPL36A (60S ribosomal protein L36a [Source:NCBI gene;Acc:101168792])

HSP 1 Score: 171.4 bits (433), Expect = 4.409e-55
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMEC--QSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVN+PKTR+TFCK  KCK+H  HKVTQYK GK SLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLR+EC   +C+ K+ +AIKRCKHFELGGDKK+KGQ+IQF
Sbjct:   66 MVNVPKTRRTFCK--KCKKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 171

[Close]

BLAST of 60S ribosomal protein L44 vs. Planmine SMEST
Match: SMESG000026827.1 (SMESG000026827.1)

HSP 1 Score: 212.616 bits (540), Expect = 2.159e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1

Query:   94 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 106

[Close]

BLAST of 60S ribosomal protein L44 vs. Planmine SMEST
Match: SMESG000026827.1 (SMESG000026827.1)

HSP 1 Score: 169.474 bits (428), Expect = 1.442e-55
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1

Query:  157 MHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 411
            MHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF
Sbjct:    1 MHKVTQYKAGKASLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKKGQMIQF 85

The following BLAST results are available for this feature:

BLAST of 60S ribosomal protein L44 vs. Ensembl Human
BLAST of 60S ribosomal protein L44 vs. Ensembl Celegans
BLAST of 60S ribosomal protein L44 vs. Ensembl Fly
BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
BLAST of 60S ribosomal protein L44 vs. Ensembl Xenopus
BLAST of 60S ribosomal protein L44 vs. Ensembl Mouse
BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
BLAST of 60S ribosomal protein L44 vs. TrEMBL
BLAST of 60S ribosomal protein L44 vs. Ensembl Cavefish
BLAST of 60S ribosomal protein L44 vs. Ensembl Sea Lamprey
BLAST of 60S ribosomal protein L44 vs. Ensembl Yeast
BLAST of 60S ribosomal protein L44 vs. Ensembl Nematostella
BLAST of 60S ribosomal protein L44 vs. Ensembl Medaka
BLAST of 60S ribosomal protein L44 vs. Planmine SMEST

BLAST of 60S ribosomal protein L44 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPL36A	9.219e-55	79.63	ribosomal protein L36a [Source:HGNC Symbol;Acc:HGN...	[more]
RPL36A	9.219e-55	79.63	ribosomal protein L36a [Source:HGNC Symbol;Acc:HGN...	[more]
RPL36A	1.669e-54	79.63	ribosomal protein L36a [Source:HGNC Symbol;Acc:HGN...	[more]
RPL36AL	2.918e-54	78.70	ribosomal protein L36a like [Source:HGNC Symbol;Ac...	[more]
RPL36A-HNRNPH2	3.220e-50	79.41	RPL36A-HNRNPH2 readthrough [Source:HGNC Symbol;Acc...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rpl-36.A	1.289e-55	78.30	Ribosomal protein rpl-36.A [Source:UniProtKB/Swis...	[more]
rpl-36.A	1.289e-55	78.30	Ribosomal protein rpl-36.A [Source:UniProtKB/Swis...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
RpL36A	5.794e-52	76.42	gene:FBgn0031980 transcript:FBtr0079546	[more]
RpL36A	5.794e-52	76.42	gene:FBgn0031980 transcript:FBtr0345332	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl36a	4.878e-55	79.63	ribosomal protein L36A [Source:NCBI gene;Acc:19581...	[more]
rpl36a	2.076e-54	79.44	ribosomal protein L36A [Source:NCBI gene;Acc:19581...	[more]
rpl36a	9.446e-54	79.44	ribosomal protein L36A [Source:NCBI gene;Acc:19581...	[more]
rpl36a	6.402e-53	79.44	ribosomal protein L36A [Source:NCBI gene;Acc:19581...	[more]
rpl36a	1.706e-17	74.47	ribosomal protein L36A [Source:NCBI gene;Acc:19581...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rpl36a	3.083e-54	78.70	ribosomal protein L36a [Source:NCBI gene;Acc:44867...	[more]
rpl36a	3.083e-54	78.70	ribosomal protein L36a [Source:NCBI gene;Acc:44867...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rpl36al	1.146e-54	79.63	ribosomal protein L36A-like [Source:MGI Symbol;Acc...	[more]
Rpl36al	1.146e-54	79.63	ribosomal protein L36A-like [Source:MGI Symbol;Acc...	[more]
Rpl36al	1.146e-54	79.63	ribosomal protein L36A-like [Source:MGI Symbol;Acc...	[more]
Rpl36a	1.146e-54	79.63	ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:...	[more]
Rpl36a-ps1	3.156e-52	76.85	ribosomal protein L36A, pseudogene 1 [Source:MGI S...	[more]

BLAST of 60S ribosomal protein L44 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P48166\|RL36A_CAEEL	1.640e-54	78.30	Ribosomal protein rpl-36.A OS=Caenorhabditis elega...	[more]
sp\|P61486\|RL36A_TAKRU	3.683e-54	79.63	60S ribosomal protein L36a OS=Takifugu rubripes OX...	[more]
sp\|P61487\|RL36A_ICTPU	3.683e-54	79.63	60S ribosomal protein L36a OS=Ictalurus punctatus ...	[more]
sp\|P61485\|RL36A_DANRE	3.683e-54	79.63	60S ribosomal protein L36a OS=Danio rerio OX=7955 ...	[more]
sp\|P90702\|RL44_BRUMA	6.963e-54	77.36	60S ribosomal protein L44 OS=Brugia malayi OX=6279...	[more]

BLAST of 60S ribosomal protein L44 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A504YIE6	3.650e-62	89.62	Ribosomal protein L44 OS=Fasciola gigantica OX=468...	[more]
A0A2H1BRD0	3.650e-62	89.62	Ribosomal protein L44 OS=Fasciola hepatica OX=6192...	[more]
A0A0X3P0J0	6.246e-62	89.62	60S ribosomal protein L36a OS=Schistocephalus soli...	[more]
A0A3P7NA03	6.598e-62	89.62	Uncharacterized protein OS=Dibothriocephalus latus...	[more]
A0A5J4N341	1.105e-61	90.57	Large subunit ribosomal protein L44e OS=Paragonimu...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rpl36a	4.134e-55	79.63	60S ribosomal protein L36a [Source:NCBI gene;Acc:1...	[more]
rpl36a	5.628e-54	79.44	60S ribosomal protein L36a [Source:NCBI gene;Acc:1...	[more]
ENSAMXT00000030450.1	1.484e-16	65.38	pep primary_assembly:Astyanax_mexicanus-2.0:5:2768...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of 60S ribosomal protein L44 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPL42A	9.610e-50	75.47	Ribosomal 60S subunit protein L42A; homologous to ...	[more]
RPL42B	9.610e-50	75.47	Ribosomal 60S subunit protein L42B; required for p...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO38414	1.717e-60	81.13	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38415	7.322e-20	82.22	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 60S ribosomal protein L44 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2


Match Name	E-value	Identity	Description
RPL36A	3.427e-55	80.56	60S ribosomal protein L36a [Source:NCBI gene;Acc:1...	[more]
RPL36A	4.409e-55	80.56	60S ribosomal protein L36a [Source:NCBI gene;Acc:1...	[more]

BLAST of 60S ribosomal protein L44 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000026827.1	2.159e-72	100.00	SMESG000026827.1	[more]
SMESG000026827.1	1.442e-55	100.00	SMESG000026827.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30011003 ID=SMED30011003|Name=60S ribosomal protein L44|organism=Schmidtea mediterranea sexual|type=transcript|length=454bp
TTTTAACCAAATTCAAATACATTAATTAAATTATATATATATTTAAAATA
TTGTTTAAATTTCTAAATTGTTAAAATTTCGTAATTTTTAAAAATGGTTA
ATATTCCAAAAACCAGAAAAACTTTTTGTAAAAACTCAAAATGCAAACAA
CATACCATGCATAAGGTTACCCAATACAAAGCTGGCAAGGCCAGTTTGTA
TGCCCAAGGAAAAAGACGTTACGACCGAAAACAGTCTGGTTATGGTGGTC
AAACTAAACCTATCTTCAGAAAGAAGGCTAAGACTACGAAGAAAATTGTT
TTGAGAATGGAATGCCAATCATGCAAACACAAGAAGCAAATTGCTATTAA
AAGATGTAAGCACTTCGAATTGGGTGGTGACAAAAAGAAGAAAGGTCAAA
TGATCCAGTTTTAAATGTAATTTAAAATAAAATTTGGAATATATCAAAAA
AAAA

protein sequence of SMED30011003-orf-1

>SMED30011003-orf-1 ID=SMED30011003-orf-1|Name=SMED30011003-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp
MVNIPKTRKTFCKNSKCKQHTMHKVTQYKAGKASLYAQGKRRYDRKQSGY
GGQTKPIFRKKAKTTKKIVLRMECQSCKHKKQIAIKRCKHFELGGDKKKK
GQMIQF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000240	body wall musculature
PLANA:0000429	neoblast
PLANA:0002032	epidermal cell
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR000552	Ribosomal_L44e
IPR011332	Ribosomal_zn-bd

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **cellular component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0030529	intracellular ribonucleoprotein complex

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.80		coord: 1..106 e-value: 8.1E-55 score: 185.7
None	No IPR available	PANTHER	PTHR10369:SF34		coord: 1..102
None	No IPR available	PRODOM	PD002841		coord: 10..93 e-value: 1.0E-35 score: 369.0
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..94 e-value: 4.3E-36 score: 123.2
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 1..102
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 2..94

Main menu

60S ribosomal protein L44

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 13

Owlery

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