dynactin subunit 3
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010984 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of dynactin subunit 3 vs. Ensembl Human
Match: DCTN3 (dynactin subunit 3 [Source:HGNC Symbol;Acc:HGNC:2713]) HSP 1 Score: 55.0694 bits (131), Expect = 6.508e-9 Identity = 32/130 (24.62%), Postives = 68/130 (52.31%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 +S R ++ + +++++ KY+DP + D I++ + K++ ILA+E+ I L+Q+ L +L S H+K + + L+ +I +++ E + LL+EY + +S + W++ L E Sbjct: 47 ISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
BLAST of dynactin subunit 3 vs. Ensembl Human
Match: DCTN3 (dynactin subunit 3 [Source:HGNC Symbol;Acc:HGNC:2713]) HSP 1 Score: 45.8246 bits (107), Expect = 7.544e-6 Identity = 21/71 (29.58%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLK 406 +S R ++ + +++++ KY+DP + D I++ + K++ ILA+E+ I L+Q+ L +L S H+K Sbjct: 47 ISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIK 117
BLAST of dynactin subunit 3 vs. Ensembl Human
Match: DCTN3 (dynactin subunit 3 [Source:HGNC Symbol;Acc:HGNC:2713]) HSP 1 Score: 46.2098 bits (108), Expect = 8.545e-6 Identity = 21/71 (29.58%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLK 406 +S R ++ + +++++ KY+DP + D I++ + K++ ILA+E+ I L+Q+ L +L S H+K Sbjct: 47 ISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIK 117
BLAST of dynactin subunit 3 vs. Ensembl Human
Match: DCTN3 (dynactin subunit 3 [Source:HGNC Symbol;Acc:HGNC:2713]) HSP 1 Score: 46.2098 bits (108), Expect = 8.968e-6 Identity = 21/71 (29.58%), Postives = 43/71 (60.56%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLK 406 +S R ++ + +++++ KY+DP + D I++ + K++ ILA+E+ I L+Q+ L +L S H+K Sbjct: 47 ISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIK 117
BLAST of dynactin subunit 3 vs. Ensembl Zebrafish
Match: dctn3 (dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]) HSP 1 Score: 71.2478 bits (173), Expect = 6.557e-15 Identity = 40/140 (28.57%), Postives = 79/140 (56.43%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKL 571 C L +S + + R ++ + +++++ KY+DP F D I++ ++ K+E ILA+EE +R A L+Q+ ++ +L S H+K L K + LS +I ++++E + V+ L +EY ++M +S W++ L Sbjct: 35 CAESLTRISAALANTANKRERVKILHKKIEDLLKYLDPQFTDFIAVPDSVKLEFILAEEEFLRSQAALLEQVQNMQPLLDSNHIKAVPELTTKVQRLSQIHIQQQDQNEDLSAEVKRLFEEYNKMMFLLSKQFSQWDETL 174
BLAST of dynactin subunit 3 vs. Ensembl Zebrafish
Match: dctn3 (dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]) HSP 1 Score: 66.6254 bits (161), Expect = 2.898e-13 Identity = 36/126 (28.57%), Postives = 72/126 (57.14%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELM 529 C L +S + + R ++ + +++++ KY+DP F D I++ ++ K+E ILA+EE +R A L+Q+ ++ +L S H+K L K + LS +I ++++E + V+ L +EY ++ Sbjct: 35 CAESLTRISAALANTANKRERVKILHKKIEDLLKYLDPQFTDFIAVPDSVKLEFILAEEEFLRSQAALLEQVQNMQPLLDSNHIKAVPELTTKVQRLSQIHIQQQDQNEDLSAEVKRLFEEYNKMF 160
BLAST of dynactin subunit 3 vs. Ensembl Mouse
Match: Dctn3 (dynactin 3 [Source:MGI Symbol;Acc:MGI:1859251]) HSP 1 Score: 49.2914 bits (116), Expect = 4.932e-7 Identity = 29/130 (22.31%), Postives = 65/130 (50.00%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 ++ R ++ + +++++ KY+DP + D I++ K++ ILA+E+ I L+Q+ L +L S +K + + L+ +I +++ E + LL+ Y + +S + W++ L E Sbjct: 47 IASKRERVKILYKKIEDLIKYLDPEYIDRIAIPEASKLQFILAEEQFILSQVALLEQVNALVPVLDSASIKAVPEHAARLQRLAQIHIQQQDQCVAITEESKALLEGYNKTTMLLSKQFVQWDELLCQLE 176
BLAST of dynactin subunit 3 vs. UniProt/SwissProt
Match: sp|Q0P5A1|DCTN3_BOVIN (Dynactin subunit 3 OS=Bos taurus OX=9913 GN=DCTN3 PE=2 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 2.802e-8 Identity = 32/130 (24.62%), Postives = 68/130 (52.31%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 ++ R ++ + +++++ KY+DP + D I+L + K++ ILA+E+ I L+Q+ L +L S H+K + + L+ +I +++ E + LL+EY + +S + W++ L E Sbjct: 47 IASKRERVKVLYKKIEDLIKYLDPEYIDRIALPDASKLQFILAEEQFILSQVALLEQVEALVPMLDSTHIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
BLAST of dynactin subunit 3 vs. UniProt/SwissProt
Match: sp|O75935|DCTN3_HUMAN (Dynactin subunit 3 OS=Homo sapiens OX=9606 GN=DCTN3 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 3.125e-8 Identity = 32/130 (24.62%), Postives = 68/130 (52.31%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 +S R ++ + +++++ KY+DP + D I++ + K++ ILA+E+ I L+Q+ L +L S H+K + + L+ +I +++ E + LL+EY + +S + W++ L E Sbjct: 47 ISSKRERVKILYKKIEDLIKYLDPEYIDRIAIPDASKLQFILAEEQFILSQVALLEQVNALVPMLDSAHIKAVPEHAARLQRLAQIHIQQQDQCVEITEESKALLEEYNKTTMLLSKQFVQWDELLCQLE 176
BLAST of dynactin subunit 3 vs. UniProt/SwissProt
Match: sp|Q9Z0Y1|DCTN3_MOUSE (Dynactin subunit 3 OS=Mus musculus OX=10090 GN=Dctn3 PE=1 SV=2) HSP 1 Score: 49.2914 bits (116), Expect = 3.450e-6 Identity = 29/130 (22.31%), Postives = 65/130 (50.00%), Query Frame = 2 Query: 194 VSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 ++ R ++ + +++++ KY+DP + D I++ K++ ILA+E+ I L+Q+ L +L S +K + + L+ +I +++ E + LL+ Y + +S + W++ L E Sbjct: 47 IASKRERVKILYKKIEDLIKYLDPEYIDRIAIPEASKLQFILAEEQFILSQVALLEQVNALVPVLDSASIKAVPEHAARLQRLAQIHIQQQDQCVAITEESKALLEGYNKTTMLLSKQFVQWDELLCQLE 176
BLAST of dynactin subunit 3 vs. TrEMBL
Match: A0A075AHA6 (UBIQUITIN_CONJUGAT_2 domain-containing protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_13346 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.321e-18 Identity = 48/130 (36.92%), Postives = 78/130 (60.00%), Query Frame = 2 Query: 200 ENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKEKE 589 E RP I K+ SR+ E++KY DP F DD S+S K+E+IL ++E + +A L+++ +L +L+ +D L++K EL+ +Y++ K SE Q LL Y +L+ S L++ WNQK++S E Sbjct: 322 ERRPMISKMFSRLTELQKYADPHFVDDDSMSTKAKVEIILLEKEKLENMAVALEKIRQLSNVLNHPSFRDLASLRRKLNELNLTYVNQKQRSEQLITASQTLLANYYDLILATSKLLIQWNQKVVSTADE 451
BLAST of dynactin subunit 3 vs. TrEMBL
Match: A0A1S8X6L8 (Ubiquitin--protein ligase OS=Opisthorchis viverrini OX=6198 GN=X801_01710 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.739e-18 Identity = 48/130 (36.92%), Postives = 78/130 (60.00%), Query Frame = 2 Query: 200 ENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKEKE 589 E RP I K+ SR+ E++KY DP F DD S+S K+E+IL ++E + +A L+++ +L +L+ +D L++K EL+ +Y++ K SE Q LL Y +L+ S L++ WNQK++S E Sbjct: 325 ERRPMISKMFSRLTELQKYADPHFVDDDSMSTKAKVEIILLEKEKLENMAVALEKIRQLSNVLNHPSFRDLASLRRKLNELNLTYVNQKQRSEQLITASQTLLANYYDLILATSKLLIQWNQKVVSTADE 454
BLAST of dynactin subunit 3 vs. TrEMBL
Match: R7UQ88 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_189188 PE=4 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.254e-17 Identity = 42/137 (30.66%), Postives = 84/137 (61.31%), Query Frame = 2 Query: 119 GDSVIPESFEPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELM 529 GD+ + ++ L ++KK E RPKI ++ R+ ++E +DP + + LS + K ++ILA+E+ IRQ A NL ++ +++IL S+H+K LQ+K +LS+ ++ ++ + +E+V++LL++Y ++ Sbjct: 21 GDADKEADYPKIVDTLGKFDSQMKKAVEGRPKINTVIKRLDQLESLLDPAQMESLMLSQDAKADIILAEEQLIRQQAENLQKIQGMQDILGSEHIKAVPDLQEKLHQLSSVHLKQQDSTVALSEDVKDLLRQYNSIV 157
BLAST of dynactin subunit 3 vs. TrEMBL
Match: A0A267G2M7 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009512g2 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.441e-16 Identity = 46/148 (31.08%), Postives = 87/148 (58.78%), Query Frame = 2 Query: 146 EPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLK--DSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 E C L V+K+ + + R K+ +I++R EI+KYMD F ++ +LS K+ +IL++E+ IR+ A L+++++LK +L S+HL+ D +L+ +F EL ++ +++ + LL Y M+ +S + WN+K+ + E Sbjct: 25 ESCAETLQTVNKKYEASTAKRDKVQRILARFNEIDKYMDSRFCEETALSTEAKIRVILSEEQQIRETAAALERISELKSVLDSEHLRAADQKLLE-RFAELRQKQLEQTEDAQKLEQQTYELLNVYFSFMDLVSKQFIAWNKKVRAAE 171
BLAST of dynactin subunit 3 vs. TrEMBL
Match: A0A267ELX8 (Uncharacterized protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig009512g1 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.521e-16 Identity = 46/148 (31.08%), Postives = 87/148 (58.78%), Query Frame = 2 Query: 146 EPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLK--DSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 E C L V+K+ + + R K+ +I++R EI+KYMD F ++ +LS K+ +IL++E+ IR+ A L+++++LK +L S+HL+ D +L+ +F EL ++ +++ + LL Y M+ +S + WN+K+ + E Sbjct: 26 ESCAETLQTVNKKYEASTAKRDKVQRILARFNEIDKYMDSRFCEETALSTEAKIRVILSEEQQIRETAAALERISELKSVLDSEHLRAADQKLLE-RFAELRQKQLEQTEDAQKLEQQTYELLNVYFSFMDLVSKQFIAWNKKVRAAE 172
BLAST of dynactin subunit 3 vs. Ensembl Cavefish
Match: dctn3 (dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]) HSP 1 Score: 60.4622 bits (145), Expect = 4.619e-11 Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKL 571 C L ++ + + R ++ KI+ + +++ KY+DP F I++ + K+E ILA+E+ + A L+Q+ L+ +L S H+K L K + LS +I +SE + V+ L++EY ++M +S W++ L Sbjct: 33 CAESLARINTALANTANKRERV-KILHKKEDLLKYLDPQFTAHIAVPDAMKLEFILAEEDFLCSQAALLEQVNNLQPLLDSNHIKVPE-LTTKVQRLSQIHIKQNGQSEELSAEVRRLIEEYNKMMFLLSKQFTQWDETL 170
BLAST of dynactin subunit 3 vs. Ensembl Cavefish
Match: dctn3 (dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]) HSP 1 Score: 53.5286 bits (127), Expect = 1.239e-8 Identity = 35/140 (25.00%), Postives = 72/140 (51.43%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKL 571 C L ++ + + R ++ + +++++ KY+DP F I++ + K+E ILA+E+ + A L+Q+ L+ +L S H+K + FR + + E+ E V+ L++EY ++M +S W++ L Sbjct: 37 CAESLARINTALANTANKRERVKILHKKIEDLLKYLDPQFTAHIAVPDAMKLEFILAEEDFLCSQAALLEQVNNLQPLLDSNHIKGKMMGFSNFRCSRPAGVHICRLEELSAE-VRRLIEEYNKMMFLLSKQFTQWDETL 175
BLAST of dynactin subunit 3 vs. Ensembl Nematostella
Match: EDO44294 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWD0]) HSP 1 Score: 64.3142 bits (155), Expect = 7.920e-13 Identity = 36/142 (25.35%), Postives = 73/142 (51.41%), Query Frame = 2 Query: 146 EPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKL 571 E C++ + V + +K++S ++ + +VKE+E ++ P F + +LS++ K ++I+ E + L ++ L +I++++HLKD V K L I + NE + NLL Y ++ +S ++W+ L Sbjct: 36 ESCLSTVAHVQQELKRLSSKYSRVAEAWKKVKELETFLSPEFVEGATLSDDVKADIIITGENKLISCTEKLSEIEDLNKIVNTEHLKDLPVWCAKMEPLIQVQIKQQEHVGEMNERLTNLLSCYNNIITTLSKQFIEWDALL 177
BLAST of dynactin subunit 3 vs. Ensembl Medaka
Match: dctn3 (dynactin subunit 3 [Source:NCBI gene;Acc:101164183]) HSP 1 Score: 69.707 bits (169), Expect = 4.536e-14 Identity = 38/144 (26.39%), Postives = 80/144 (55.56%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 C L + + + R ++ + +++++ KY+DP F D I++ + K+E ILA+E+S+ A L+Q++ L+ +L S +++D K LS +I ++++E ++ V+ L +EY ++M +S W++ L + E Sbjct: 90 CAESLARIQSALTNTANKRERVKILHKKIEDLMKYLDPQFTDHITVPDTIKLEFILAEEDSLLSQAALLEQVSSLQPLLDSTYIRDVPEHATKLHRLSQIHIKEQDQTEAQSQEVKKLFEEYNKMMFLLSKQFTQWDESLRTME 233
BLAST of dynactin subunit 3 vs. Ensembl Medaka
Match: dctn3 (dynactin subunit 3 [Source:NCBI gene;Acc:101164183]) HSP 1 Score: 69.707 bits (169), Expect = 4.536e-14 Identity = 38/144 (26.39%), Postives = 80/144 (55.56%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 C L + + + R ++ + +++++ KY+DP F D I++ + K+E ILA+E+S+ A L+Q++ L+ +L S +++D K LS +I ++++E ++ V+ L +EY ++M +S W++ L + E Sbjct: 90 CAESLARIQSALTNTANKRERVKILHKKIEDLMKYLDPQFTDHITVPDTIKLEFILAEEDSLLSQAALLEQVSSLQPLLDSTYIRDVPEHATKLHRLSQIHIKEQDQTEAQSQEVKKLFEEYNKMMFLLSKQFTQWDESLRTME 233
BLAST of dynactin subunit 3 vs. Ensembl Medaka
Match: dctn3 (dynactin subunit 3 [Source:NCBI gene;Acc:101164183]) HSP 1 Score: 69.707 bits (169), Expect = 4.536e-14 Identity = 38/144 (26.39%), Postives = 80/144 (55.56%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKE 583 C L + + + R ++ + +++++ KY+DP F D I++ + K+E ILA+E+S+ A L+Q++ L+ +L S +++D K LS +I ++++E ++ V+ L +EY ++M +S W++ L + E Sbjct: 90 CAESLARIQSALTNTANKRERVKILHKKIEDLMKYLDPQFTDHITVPDTIKLEFILAEEDSLLSQAALLEQVSSLQPLLDSTYIRDVPEHATKLHRLSQIHIKEQDQTEAQSQEVKKLFEEYNKMMFLLSKQFTQWDESLRTME 233
BLAST of dynactin subunit 3 vs. Ensembl Medaka
Match: dctn3 (dynactin subunit 3 [Source:NCBI gene;Acc:101164183]) HSP 1 Score: 53.9138 bits (128), Expect = 1.390e-8 Identity = 28/102 (27.45%), Postives = 56/102 (54.90%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYI 457 C L + + + R ++ + +++++ KY+DP F D I++ + K+E ILA+E+S+ A L+Q++ L+ +L S +++D K LS +I Sbjct: 90 CAESLARIQSALTNTANKRERVKILHKKIEDLMKYLDPQFTDHITVPDTIKLEFILAEEDSLLSQAALLEQVSSLQPLLDSTYIRDVPEHATKLHRLSQIHI 191
BLAST of dynactin subunit 3 vs. Ensembl Medaka
Match: dctn3 (dynactin subunit 3 [Source:NCBI gene;Acc:101164183]) HSP 1 Score: 53.9138 bits (128), Expect = 1.390e-8 Identity = 28/102 (27.45%), Postives = 56/102 (54.90%), Query Frame = 2 Query: 152 CINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYI 457 C L + + + R ++ + +++++ KY+DP F D I++ + K+E ILA+E+S+ A L+Q++ L+ +L S +++D K LS +I Sbjct: 90 CAESLARIQSALTNTANKRERVKILHKKIEDLMKYLDPQFTDHITVPDTIKLEFILAEEDSLLSQAALLEQVSSLQPLLDSTYIRDVPEHATKLHRLSQIHI 191
BLAST of dynactin subunit 3 vs. Planmine SMEST
Match: SMESG000010771.1 (SMESG000010771.1) HSP 1 Score: 316.235 bits (809), Expect = 4.847e-111 Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 2 Query: 119 GDSVIPESFEPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKEKENS 595 GDSVIPESFEPCINQL+AVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKEKENS Sbjct: 21 GDSVIPESFEPCINQLNAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANNLDQLTKLKEILSSQHLKDSGVLQKKFRELSASYIDTKNESEVFNENVQNLLKEYTELMENMSLLVLDWNQKLISKEKENS 179
BLAST of dynactin subunit 3 vs. Planmine SMEST
Match: SMESG000066339.1 (SMESG000066339.1) HSP 1 Score: 93.2041 bits (230), Expect = 1.815e-24 Identity = 48/79 (60.76%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 119 GDSVIPESFEPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIANN 355 G S I ES EPCI QLD V +RVK+VSEN P++ IV+ V E K +DPTFFDDI L NND E+IL DE+SIRQ N Sbjct: 21 GSSEILESLEPCIKQLDVVFERVKRVSENCPRVENIVNGVGETGKCIDPTFFDDIDLLNNDTFEIILVDEKSIRQRTKN 99
BLAST of dynactin subunit 3 vs. Planmine SMEST
Match: SMESG000046803.1 (SMESG000046803.1) HSP 1 Score: 93.9745 bits (232), Expect = 6.740e-23 Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 2 Query: 119 GDSVIPESFEPCINQLDAVSKRVKKVSENRPKIGKIVSRVKEIEKYMDPTFFDDISLSNNDKMEMILADEESIRQIA 349 G+SVI FE CI+QLD V +RV +VSENRP++ I S V EIEK M+ TFF+ I LSNNDK++MI DEESI Q+ Sbjct: 191 GNSVIRVRFESCISQLDVVFERVNRVSENRPRVRNIASGVGEIEKCMELTFFNGIGLSNNDKLKMIFVDEESICQMT 267 The following BLAST results are available for this feature:
BLAST of dynactin subunit 3 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 4
BLAST of dynactin subunit 3 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of dynactin subunit 3 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of dynactin subunit 3 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of dynactin subunit 3 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of dynactin subunit 3 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of dynactin subunit 3 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 3
BLAST of dynactin subunit 3 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of dynactin subunit 3 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of dynactin subunit 3 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of dynactin subunit 3 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of dynactin subunit 3 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of dynactin subunit 3 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of dynactin subunit 3 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010984 ID=SMED30010984|Name=dynactin subunit 3|organism=Schmidtea mediterranea sexual|type=transcript|length=675bpback to top protein sequence of SMED30010984-orf-1 >SMED30010984-orf-1 ID=SMED30010984-orf-1|Name=SMED30010984-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=180bp MDSTLIYLESRLEEIERILIGDSVIPESFEPCINQLDAVSKRVKKVSENRback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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