60S ribosomal protein L6
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010969 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 16
Homology
BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: RPL6 (ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]) HSP 1 Score: 170.629 bits (431), Expect = 9.873e-48 Identity = 99/209 (47.37%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +K K K+RK YP + +K+ + KKPFS H ++LR I PG +LI+L+G HRGKRV+FLKQL+SGLLLVTGP LN P+RR HQK VIATSTK+DI ++IP HL D YF R+P+ E IF K+ Y + E+RK DQK +DSQIL IK YL++ F+L++ YPHK+ F Sbjct: 89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE------GEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQ---LQGYLRSVFALTNGIYPHKLVF 288
BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: RPL6 (ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]) HSP 1 Score: 170.629 bits (431), Expect = 9.873e-48 Identity = 99/209 (47.37%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +K K K+RK YP + +K+ + KKPFS H ++LR I PG +LI+L+G HRGKRV+FLKQL+SGLLLVTGP LN P+RR HQK VIATSTK+DI ++IP HL D YF R+P+ E IF K+ Y + E+RK DQK +DSQIL IK YL++ F+L++ YPHK+ F Sbjct: 89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE------GEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQ---LQGYLRSVFALTNGIYPHKLVF 288
BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: RPL6 (ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]) HSP 1 Score: 70.0922 bits (170), Expect = 1.609e-14 Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2 Query: 221 KSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLL 400 + YP + +K+ + KKPFS H ++LR I PG +LI+L+G HRGKRV+FLKQL+SGLLL Sbjct: 3 RYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 63
BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: PSMD9 (proteasome 26S subunit, non-ATPase 9 [Source:HGNC Symbol;Acc:HGNC:9567]) HSP 1 Score: 41.5874 bits (96), Expect = 1.360e-7 Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = -1 Query: 1690 NYFNCQV*QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1812 NY + +G+G+ PL+D EG+P ++VDL+ +R AR HN Sbjct: 40 NYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTAR--HN 78 HSP 2 Score: 34.6538 bits (78), Expect = 1.360e-7 Identity = 22/72 (30.56%), Postives = 37/72 (51.39%), Query Frame = -3 Query: 1430 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPP--FARVSRVDQASVA 1639 LQND +A+M +E LH++HA + +A + + E + + G S + PP FA+V+ + S A Sbjct: 82 LQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSES-----QGPPRAFAKVNSISPGSPA 148
BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: PSMD9 (proteasome 26S subunit, non-ATPase 9 [Source:HGNC Symbol;Acc:HGNC:9567]) HSP 1 Score: 41.5874 bits (96), Expect = 1.774e-7 Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = -1 Query: 1690 NYFNCQV*QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1812 NY + +G+G+ PL+D EG+P ++VDL+ +R AR HN Sbjct: 40 NYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTAR--HN 78 HSP 2 Score: 34.6538 bits (78), Expect = 1.774e-7 Identity = 22/72 (30.56%), Postives = 37/72 (51.39%), Query Frame = -3 Query: 1430 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPP--FARVSRVDQASVA 1639 LQND +A+M +E LH++HA + +A + + E + + G S + PP FA+V+ + S A Sbjct: 82 LQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSES-----QGPPRAFAKVNSISPGSPA 148
BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Match: rpl-6 (60S ribosomal protein L6 [Source:UniProtKB/Swiss-Prot;Acc:P47991]) HSP 1 Score: 158.688 bits (400), Expect = 9.358e-45 Identity = 84/173 (48.55%), Postives = 113/173 (65.32%), Query Frame = 2 Query: 248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ +N K H K LR+ + PG VLI+L+G H+GKRV+FLKQL SGLLLVTGP+K+NG P+RR+ Q VIATS K+++ ++IP+H+ D+YF R+ + NIFA K Y V E+RK+D K +D+ IL AIKK + YL T FSL + YPHKM+F Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Match: rpl-6 (60S ribosomal protein L6 [Source:UniProtKB/Swiss-Prot;Acc:P47991]) HSP 1 Score: 158.688 bits (400), Expect = 9.358e-45 Identity = 84/173 (48.55%), Postives = 113/173 (65.32%), Query Frame = 2 Query: 248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ +N K H K LR+ + PG VLI+L+G H+GKRV+FLKQL SGLLLVTGP+K+NG P+RR+ Q VIATS K+++ ++IP+H+ D+YF R+ + NIFA K Y V E+RK+D K +D+ IL AIKK + YL T FSL + YPHKM+F Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Match: rpl-6 (60S ribosomal protein L6 [Source:UniProtKB/Swiss-Prot;Acc:P47991]) HSP 1 Score: 158.688 bits (400), Expect = 9.358e-45 Identity = 84/173 (48.55%), Postives = 113/173 (65.32%), Query Frame = 2 Query: 248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ +N K H K LR+ + PG VLI+L+G H+GKRV+FLKQL SGLLLVTGP+K+NG P+RR+ Q VIATS K+++ ++IP+H+ D+YF R+ + NIFA K Y V E+RK+D K +D+ IL AIKK + YL T FSL + YPHKM+F Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Match: rpl-6 (60S ribosomal protein L6 [Source:UniProtKB/Swiss-Prot;Acc:P47991]) HSP 1 Score: 158.688 bits (400), Expect = 9.358e-45 Identity = 84/173 (48.55%), Postives = 113/173 (65.32%), Query Frame = 2 Query: 248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ +N K H K LR+ + PG VLI+L+G H+GKRV+FLKQL SGLLLVTGP+K+NG P+RR+ Q VIATS K+++ ++IP+H+ D+YF R+ + NIFA K Y V E+RK+D K +D+ IL AIKK + YL T FSL + YPHKM+F Sbjct: 49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
Match: RpL6 (gene:FBgn0039857 transcript:FBtr0085804) HSP 1 Score: 176.022 bits (445), Expect = 1.118e-50 Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 2 Query: 170 KTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K + V+K K + SYP ++ K + K FS HK+ R + PG VLILL+G H+GKRV+ LK L+SGLLLVTGP+ LN CP+RRV Q+ VI TS+K+D+G ++P+HL D YF R + +K + + +IFA K+ +V E+RK+DQK++D+ +LK IK + F+KYL+ F+L S YPH+M F Sbjct: 50 KKSPVVEKAKVPIKKSKASYPTKTFVK-KRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA-DIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMRF 243
BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
Match: RpL6 (gene:FBgn0039857 transcript:FBtr0085805) HSP 1 Score: 176.022 bits (445), Expect = 2.246e-50 Identity = 87/182 (47.80%), Postives = 124/182 (68.13%), Query Frame = 2 Query: 212 KIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K + SYP ++ K + K FS HK+ R + PG VLILL+G H+GKRV+ LK L+SGLLLVTGP+ LN CP+RRV Q+ VI TS+K+D+G ++P+HL D YF R + +K + + +IFA K+ +V E+RK+DQK++D+ +LK IK + F+KYL+ F+L S YPH+M F Sbjct: 83 KSKASYPTKTFVK-KRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA-DIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMRF 262
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: rpl6 (ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]) HSP 1 Score: 159.073 bits (401), Expect = 5.503e-44 Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 2 Query: 212 KIRKSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ + YP + ++K+ + K FS H+++LR+ I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP +N P+RR HQK IAT+TK+DI ++IP L D YF + ++ K IF K+ Y + E+RK DQK +DSQ+L IKK YL++ FSLS+ YPHK+ F Sbjct: 88 KMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHRGKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQ---LRGYLRSMFSLSNGVYPHKLVF 265
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: rpl6 (ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]) HSP 1 Score: 159.073 bits (401), Expect = 5.503e-44 Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 2 Query: 212 KIRKSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ + YP + ++K+ + K FS H+++LR+ I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP +N P+RR HQK IAT+TK+DI ++IP L D YF + ++ K IF K+ Y + E+RK DQK +DSQ+L IKK YL++ FSLS+ YPHK+ F Sbjct: 88 KMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHRGKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQ---LRGYLRSMFSLSNGVYPHKLVF 265
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: rpl6 (ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]) HSP 1 Score: 159.073 bits (401), Expect = 5.503e-44 Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 2 Query: 212 KIRKSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ + YP + ++K+ + K FS H+++LR+ I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP +N P+RR HQK IAT+TK+DI ++IP L D YF + ++ K IF K+ Y + E+RK DQK +DSQ+L IKK YL++ FSLS+ YPHK+ F Sbjct: 88 KMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHRGKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQ---LRGYLRSMFSLSNGVYPHKLVF 265
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: psmd9 (proteasome 26S subunit, non-ATPase 9 [Source:ZFIN;Acc:ZDB-GENE-030131-431]) HSP 1 Score: 44.2838 bits (103), Expect = 1.166e-9 Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = -1 Query: 1687 GVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1785 GVG+ GPL+D EGFP +VDL+ +R AR +C Sbjct: 32 GVGMDGPLVDVEGFPRADVDLYKVRTARHSISC 64 HSP 2 Score: 38.891 bits (89), Expect = 1.166e-9 Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = -3 Query: 1424 LQNDLRAIMLDIESKLHEIHALNIRT--EANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQ 1639 LQND +AIM++IE LH++HA T + + +++SG+ V T PPFA V V S A Q Sbjct: 65 LQNDHKAIMVEIEEALHKLHATAKVTHEQDDTQMESSGQTVETP-------------PPFALVDAVTHGSPAAQ 125
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: psmd9 (proteasome 26S subunit, non-ATPase 9 [Source:ZFIN;Acc:ZDB-GENE-030131-431]) HSP 1 Score: 44.2838 bits (103), Expect = 1.220e-9 Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = -1 Query: 1687 GVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1785 GVG+ GPL+D EGFP +VDL+ +R AR +C Sbjct: 45 GVGMDGPLVDVEGFPRADVDLYKVRTARHSISC 77 HSP 2 Score: 38.891 bits (89), Expect = 1.220e-9 Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = -3 Query: 1424 LQNDLRAIMLDIESKLHEIHALNIRT--EANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQ 1639 LQND +AIM++IE LH++HA T + + +++SG+ V T PPFA V V S A Q Sbjct: 78 LQNDHKAIMVEIEEALHKLHATAKVTHEQDDTQMESSGQTVETP-------------PPFALVDAVTHGSPAAQ 138
BLAST of 60S ribosomal protein L6 vs. Ensembl Xenopus
Match: mrrf (mitochondrial ribosome recycling factor [Source:Xenbase;Acc:XB-GENE-1008997]) HSP 1 Score: 132.109 bits (331), Expect = 2.548e-34 Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF 529 L T +KT K K+RK YP + +K+ + KKPFS HK++LR I PG VLILL+G HRGKRV+FLKQL +GLLLVTGP +N P+RR HQK IATSTK+DI ++IP HL D YF Sbjct: 60 LVTVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHKRKLRSSITPGTVLILLNGRHRGKRVVFLKQLQTGLLLVTGPLAINRVPLRRAHQKFAIATSTKIDISSVKIPKHLTDSYF 188
BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Rpl6 (ribosomal protein L6 [Source:MGI Symbol;Acc:MGI:108057]) HSP 1 Score: 174.481 bits (441), Expect = 3.114e-49 Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +KT K K+RK YP + +K+ + KKPFS H +RLR I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP +N P+RR HQK VIATSTK+DI +++IP HL D YF R+P+ E IF K+ Y + E+RK DQK +D QIL IK YL++ FSL++ YPHK+ F Sbjct: 97 LATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQE------GEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQ---LQGYLRSQFSLTNGMYPHKLVF 296
BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Rpl6 (ribosomal protein L6 [Source:MGI Symbol;Acc:MGI:108057]) HSP 1 Score: 70.0922 bits (170), Expect = 1.128e-14 Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2 Query: 272 PFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVT 406 PFS H +RLR I PG VLI+L+G HRGKRV+FLKQL SGLLLVT Sbjct: 1 PFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVT 45
BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Psmd9 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Source:MGI Symbol;Acc:MGI:1914401]) HSP 1 Score: 40.0466 bits (92), Expect = 3.233e-6 Identity = 18/41 (43.90%), Postives = 27/41 (65.85%), Query Frame = -1 Query: 1690 NYFNCQV*QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1812 NY + +G+G+ PL+D EG+P +VDL+ +R AR HN Sbjct: 40 NYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTAR--HN 78 HSP 2 Score: 31.187 bits (69), Expect = 3.233e-6 Identity = 20/72 (27.78%), Postives = 37/72 (51.39%), Query Frame = -3 Query: 1430 LGLQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVA 1645 + LQND +A+M +E LH++HA + +A + + E ++ ++ + A FARV+ + S A Sbjct: 80 ICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSPVLPQA----FARVNSISPGSPA 147
BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Psmd9 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Source:MGI Symbol;Acc:MGI:1914401]) HSP 1 Score: 39.6614 bits (91), Expect = 4.263e-6 Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = -1 Query: 1690 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1788 +G+G+ PL+D EG+P +VDL+ +R AR HN Sbjct: 2 KGIGMNEPLVDCEGYPRADVDLYQVRTAR--HN 32 HSP 2 Score: 31.187 bits (69), Expect = 4.263e-6 Identity = 20/72 (27.78%), Postives = 37/72 (51.39%), Query Frame = -3 Query: 1430 LGLQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVA 1645 + LQND +A+M +E LH++HA + +A + + E ++ ++ + A FARV+ + S A Sbjct: 34 ICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSPVLPQA----FARVNSISPGSPA 101
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|P21533|RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus OX=10116 GN=Rpl6 PE=1 SV=5) HSP 1 Score: 178.718 bits (452), Expect = 5.527e-50 Identity = 101/205 (49.27%), Postives = 129/205 (62.93%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +KT K K+RK YP + +K+ + KKPFS H +RLR I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP LN P+RR HQK VIATSTK+DI +++IP HL D YF ++P + + IF K+ Y + E+RK DQK +DSQIL IK YL++ FSL++ YPHK+ F Sbjct: 99 LATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQE--GEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQ---LQGYLRSQFSLTNGMYPHKLVF 298
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|Q2YGT9|RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3) HSP 1 Score: 174.866 bits (442), Expect = 8.714e-49 Identity = 101/209 (48.33%), Postives = 130/209 (62.20%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +K K K+RK YP + +K+ + KKPFS H ++LR I PG +LI+L+G HRGKRVIFLKQLSSGLLLVTGP LN P+RR HQK VIATSTK+DI ++IP+HL D YF R+P+ E IF K+ Y + E+RK DQK +DSQIL+ IK YL++ F+L++ YPHK+ F Sbjct: 85 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQE------GEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQ---LQGYLRSVFALTNGIYPHKLVF 284
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|P47911|RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus OX=10090 GN=Rpl6 PE=1 SV=3) HSP 1 Score: 174.481 bits (441), Expect = 2.178e-48 Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +KT K K+RK YP + +K+ + KKPFS H +RLR I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP +N P+RR HQK VIATSTK+DI +++IP HL D YF R+P+ E IF K+ Y + E+RK DQK +D QIL IK YL++ FSL++ YPHK+ F Sbjct: 97 LATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQE------GEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQ---LQGYLRSQFSLTNGMYPHKLVF 296
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|Q6QMZ4|RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera OX=34839 GN=RPL6 PE=2 SV=3) HSP 1 Score: 172.94 bits (437), Expect = 6.175e-48 Identity = 100/209 (47.85%), Postives = 128/209 (61.24%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +K K K+RK YP + +K+ + KKPFS H ++LR I PG VLI+L+G HRGKRV+FLKQL+SGLLLVTGP LN P+RR HQK VIATSTK+DI ++IP HL D YF R+P+ E IF K+ Y + E+RK DQK +DSQIL IK YL++ F+L++ YPHK+ F Sbjct: 89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE------GEIFDTEKERYQISEQRKVDQKAVDSQILPKIKAVPQ---LRGYLRSVFALTNGIYPHKLVF 288
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|Q58DQ3|RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus OX=9913 GN=RPL6 PE=2 SV=3) HSP 1 Score: 171.785 bits (434), Expect = 1.283e-47 Identity = 98/209 (46.89%), Postives = 129/209 (61.72%), Query Frame = 2 Query: 155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 LAT +K K K+RK YP + +K+ + KKPFS H ++LR I PG +LI+L+G HRGKRV+FLKQL SGLLLVTGP LN P+RR HQK VIATSTK+DI ++IP+HL D YF R+P+ E IF ++ Y + E+RK DQK +DSQIL+ IK YL++ F+L++ YPHK+ F Sbjct: 88 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQE------GEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQ---LQGYLRSVFALTNGIYPHKVVF 287
BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A2I9LPM6 (60S ribosomal protein L6 OS=Centruroides hentzi OX=88313 PE=3 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 3.744e-53 Identity = 99/183 (54.10%), Postives = 130/183 (71.04%), Query Frame = 2 Query: 212 KIRKSYPVQSQKKVSKNRKK-PFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K R+ YP + + K+ K+RK FS HK+ LR++I PG VLILL+G HRGKRV+FLKQL SGLLLVTGP+K+NGCP+RR++Q VIATSTKLDI E++IP HL D YF R+ + EK D IF + Y V EKRK+DQ ++D Q+++AIKK +K YL + F L + YPH+M+F Sbjct: 82 KQRRYYPTEDRPKLKKSRKMVSFSKHKRYLRKRITPGTVLILLAGRHRGKRVVFLKQLQSGLLLVTGPFKVNGCPLRRINQIYVIATSTKLDISEVKIPAHLNDKYFNRKHSKKEK--KDEGEIFELKSEEYTVNEKRKKDQIEVDRQLIEAIKKNPEKKMLFSYLASVFQLRNKMYPHRMKF 262
BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A0B6XXD3 (Uncharacterized protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF4434 PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.298e-52 Identity = 92/182 (50.55%), Postives = 127/182 (69.78%), Query Frame = 2 Query: 212 KIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 ++ + YP + + + +RKKPFS H++ LR IKPG VLILL+G H+GKRV+FLKQL +GLLLVTGPY LNGCP+RR++Q VIAT T++DI +++IP+ + DDYF R+ + K + +IF K+ Y V +RKEDQ +D QIL AI++ +K YL FSLS+H +PHKM F Sbjct: 35 RLSRFYPTEDKPRKLLSRKKPFSQHRRHLRSSIKPGTVLILLAGRHKGKRVVFLKQLKTGLLLVTGPYHLNGCPLRRINQIYVIATKTRIDIKDVKIPERVNDDYFRRQKLRKPKHAE--GDIFNTKKEVYAVSNERKEDQTAVDRQILDAIRQNPEKKLLFGYLGALFSLSNHQFPHKMVF 214
BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A1W7R9Q1 (60S ribosomal protein L6 OS=Hadrurus spadix OX=141984 PE=3 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.568e-52 Identity = 98/183 (53.55%), Postives = 129/183 (70.49%), Query Frame = 2 Query: 212 KIRKSYPVQSQKKVSKNRKK-PFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K R+ YP + + K+ K+RK PF+ HK+ LR++I PG VLILL+G HRGKRVIFLKQL SGLLLVTGP+K+NGCP+RR++Q VIATSTKLD+ ++ IP HL D YF R+ + EK D IF + Y V E+RK+DQ ++D QIL+ IKK +K YL + F L + YPH+M+F Sbjct: 78 KQRRYYPTEDRPKLKKSRKMIPFAKHKRYLRKRITPGTVLILLAGRHRGKRVIFLKQLPSGLLLVTGPFKINGCPLRRINQIYVIATSTKLDLTDINIPAHLNDRYFNRKHAKKEK---DEAEIFETKSEEYAVTEQRKKDQIEVDKQILETIKKHPEKKMMLAYLGSVFQLRNKMYPHRMKF 257
BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A1Z5LG56 (60S ribosomal protein L6 (Fragment) OS=Ornithodoros moubata OX=6938 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 2.861e-52 Identity = 95/183 (51.91%), Postives = 130/183 (71.04%), Query Frame = 2 Query: 212 KIRKSYPVQSQKKVSKNRK-KPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K R+SYP + + ++ K RK KP H LR++I PG VLILL+G+HRGKRV+FLKQL +GLLLVTGPY +NGCP+RRV+Q VIATSTK+DI +++P+HL D YF R+P+ +K D +IF + V E+RK+DQ ++D Q+L AIK +K YL ++FSL +H YPHK++F Sbjct: 97 KERRSYPTEDKPRLMKTRKMKPSCLHPISLRKRITPGTVLILLAGVHRGKRVVFLKQLKTGLLLVTGPYTVNGCPMRRVNQTYVIATSTKIDISAVKVPEHLNDKYF-RKPRH-KKQRKDDGDIFESKPEEPAVSEQRKKDQLEVDKQVLAAIKAHPEKGMMRHYLASTFSLRNHMYPHKLKF 277
BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A3S1BKF4 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_006356 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 2.896e-52 Identity = 90/182 (49.45%), Postives = 130/182 (71.43%), Query Frame = 2 Query: 212 KIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 ++ + YP + + + KN K F+ HK++LRE I PG +LIL++G H+GKRV+FLKQL++GLLLVTGPY LNGCP+RR++Q+ VIAT TKLDI +++PD + D+YF R Q+ +K +IF+ K+ Y V ++RKEDQ +D QIL I+K+ +K YL + FSLS++ +PHKM F Sbjct: 29 RMPRWYPTEDKPRKLKNHKIAFNQHKRKLRESITPGTILILVAGRHKGKRVVFLKQLNTGLLLVTGPYHLNGCPLRRINQRYVIATKTKLDIKGVKVPDRVNDEYFKR--QKSKKPKHTEGDIFSTEKEVYTVSDERKEDQANVDRQILDVIRKQKEKKLLFGYLGSMFSLSNNQFPHKMVF 208
BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
Match: rpl6 (ribosomal protein L6 [Source:NCBI gene;Acc:103032571]) HSP 1 Score: 160.229 bits (404), Expect = 1.369e-44 Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 2 Query: 212 KIRKSYPVQSQ-KKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K+ + YP ++ +K+ + KPFS H+++LR I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP +N P+RR HQK IATSTKLDI ++IP +L D YF + ++ K IF K+ Y + E+RKEDQK +D Q+L I+ + YL++ F LS+ YPHK+ F Sbjct: 83 KMPRYYPTENPPRKLRSHGIKPFSQHRRKLRSSISPGTVLIMLTGRHRGKRVVFLKQLGSGLLLVTGPLAINRVPLRRAHQKFCIATSTKLDISGVKIPKNLNDAYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKEDQKAVDKQLLPLIR---NFPHLKGYLRSQFFLSNGVYPHKLIF 260
BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
Match: psmd9 (proteasome 26S subunit, non-ATPase 9 [Source:NCBI gene;Acc:103022112]) HSP 1 Score: 41.9726 bits (97), Expect = 3.276e-9 Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = -1 Query: 1687 YFNCQV*QG-VGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1809 Y++ QG VG+ PL+D EG+P +VDLF IR AR +C Sbjct: 36 YYDVLEDQGDVGMDAPLVDVEGYPRADVDLFQIRTARHSISC 77 HSP 2 Score: 39.2762 bits (90), Expect = 3.276e-9 Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = -3 Query: 1424 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQ 1639 LQND +AIM++IE LH++HA R +A + D + TE ++ PPFARV V Q S A Q Sbjct: 78 LQNDHKAIMVEIEEALHKLHA---REKAKHDQDQAE--AQTERMEQEPSL----PPPFARVDAVTQGSPAYQ 140
BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
Match: RPL6A (Ribosomal 60S subunit protein L6A; N-terminally acetylated; binds 5.8S rRNA; homologous to mammalian ribosomal protein L6, no bacterial homolog; RPL6A has a paralog, RPL6B, that arose from the whole genome duplication [Source:SGD;Acc:S000004538]) HSP 1 Score: 119.013 bits (297), Expect = 1.519e-31 Identity = 72/185 (38.92%), Postives = 110/185 (59.46%), Query Frame = 2 Query: 203 SKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 S K K YP + + K RK +A ++LR + PG VLILL+G RGKRV++LK L LL++GP+K+NG P+RRV+ + VIATSTK+ + + + + +YFA+ ++ K N+F + ++N +K +R EDQK +D ++ IKK +YL SFSL + D PH ++F Sbjct: 2 SAQKAPKWYPSEDVAALKKTRK---AARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAK--EKLTKKEKKEANLFPE-QQNKEIKAERVEDQKVVDKALIAEIKK---TPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
Match: RPL6B (Ribosomal 60S subunit protein L6B; binds 5.8S rRNA; homologous to mammalian ribosomal protein L6, no bacterial homolog; RPL6B has a paralog, RPL6A, that arose from the whole genome duplication [Source:SGD;Acc:S000004440]) HSP 1 Score: 115.546 bits (288), Expect = 2.198e-30 Identity = 71/179 (39.66%), Postives = 104/179 (58.10%), Query Frame = 2 Query: 221 KSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 K YP + K RK + ++LR + PG VLILL+G RGKRV++LK L LLVTGP+K+NG P+RRV+ + VIATSTK+ + + + + +YFA+ ++ K N+F + + +K +R EDQK +D +L IKK +YL SFSL + D PH ++F Sbjct: 8 KWYPSEDVAAPKKTRK---AVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAK--EKLTKKEKKEANLFPEQQTKE-IKTERVEDQKVVDKALLAEIKK---TPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of 60S ribosomal protein L6 vs. Ensembl Nematostella
Match: EDO41373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4S4]) HSP 1 Score: 149.443 bits (376), Expect = 2.965e-41 Identity = 86/179 (48.04%), Postives = 114/179 (63.69%), Query Frame = 2 Query: 227 YPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDD--YFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 YP + ++ NRKKP A +LR I PG VLILL+G HRGKRV+FLKQL+SGLLLVTGP+K+NG P+RR+ Q VIATST +D+ ++++P+H D YF EP++ +K S D+ A+ KK E+R DQK +D QIL I + KYL + FSL +PH M F Sbjct: 76 YPTEDVRRRLANRKKPGMA---KLRSSITPGTVLILLAGAHRGKRVVFLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKK-KKRSEDMFEEAAEEKKP---SEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPHDMVF 244
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: rpl6 (ribosomal protein L6 [Source:NCBI gene;Acc:101172170]) HSP 1 Score: 167.933 bits (424), Expect = 2.127e-47 Identity = 100/208 (48.08%), Postives = 127/208 (61.06%), Query Frame = 2 Query: 158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 AT KT K K+RK YP + +K+ + KKPF HK++LR I PG VLILL+G HRGKRV+FLKQLSSGLLLVTGP LN P+RR HQK VIAT+TK+DI ++IP L D YF R P+ E IF K+ Y + E+RKE QK++DS++L IKK YL++SF L++ YPHK+ F Sbjct: 62 ATVVKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPFCQHKRKLRASITPGTVLILLTGRHRGKRVVFLKQLSSGLLLVTGPLALNRVPLRRAHQKFVIATNTKVDITGMKIPKTLNDAYFKKKKLRRPRHQE------GEIFDTEKEKYQLTEERKEIQKEVDSKLLPLIKKVPQ---LKGYLRSSFYLTNGVYPHKLVF 260
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000027450.1 (pep primary_assembly:ASM223467v1:10:1314901:1318310:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000027450.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 71.2478 bits (173), Expect = 1.642e-13 Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2 Query: 158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 AT KT K K+RK YP + +K+ + KKP HK++LR RV+FLKQLSS LL DI ++IP L D YF R P+Q E IF KK Y + E+RKE QK+++S++L IKK +YL++SF L++ YPHK+ F Sbjct: 59 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 211
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000027419.1 (pep primary_assembly:ASM223467v1:10:1314901:1317268:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000027419.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 71.2478 bits (173), Expect = 2.118e-13 Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2 Query: 158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 AT KT K K+RK YP + +K+ + KKP HK++LR RV+FLKQLSS LL DI ++IP L D YF R P+Q E IF KK Y + E+RKE QK+++S++L IKK +YL++SF L++ YPHK+ F Sbjct: 64 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 216
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000041303.1 (pep primary_assembly:ASM223467v1:10:1314901:1316465:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000041303.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.8626 bits (172), Expect = 2.713e-13 Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2 Query: 158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 AT KT K K+RK YP + +K+ + KKP HK++LR RV+FLKQLSS LL DI ++IP L D YF R P+Q E IF KK Y + E+RKE QK+++S++L IKK +YL++SF L++ YPHK+ F Sbjct: 63 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 215
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000045286.1 (pep primary_assembly:ASM223467v1:10:1314901:1319647:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000045286.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.8626 bits (172), Expect = 2.817e-13 Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2 Query: 158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 AT KT K K+RK YP + +K+ + KKP HK++LR RV+FLKQLSS LL DI ++IP L D YF R P+Q E IF KK Y + E+RKE QK+++S++L IKK +YL++SF L++ YPHK+ F Sbjct: 70 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 222
BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000019835.1 (SMESG000019835.1) HSP 1 Score: 417.157 bits (1071), Expect = 4.628e-143 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 2 Query: 134 EMIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 EMIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF Sbjct: 84 EMIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 291
BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000019834.1 (SMESG000019834.1) HSP 1 Score: 199.519 bits (506), Expect = 1.019e-66 Identity = 111/176 (63.07%), Postives = 117/176 (66.48%), Query Frame = -3 Query: 1121 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQCVSISIN*HG*IEMCSXXXXXXXXXXXX**RYQRNVYGSASNYGIVALSCQCKSTFFNWN*SLFIV---F*KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 1639 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC G ++ L K TF + + ++ KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI Sbjct: 55 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC------------------------------------GLRVGDELLQLDSVTKETFTDLPAIMELLRSRANKMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 194 HSP 2 Score: 74.3294 bits (181), Expect = 1.019e-66 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1 Query: 1687 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1788 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC Sbjct: 21 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 54 HSP 3 Score: 69.707 bits (169), Expect = 2.007e-13 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1 Query: 1270 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 1371 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN Sbjct: 128 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 161
BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000019834.1 (SMESG000019834.1) HSP 1 Score: 199.519 bits (506), Expect = 1.202e-66 Identity = 111/176 (63.07%), Postives = 117/176 (66.48%), Query Frame = -3 Query: 1121 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQCVSISIN*HG*IEMCSXXXXXXXXXXXX**RYQRNVYGSASNYGIVALSCQCKSTFFNWN*SLFIV---F*KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 1639 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC G ++ L K TF + + ++ KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI Sbjct: 65 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC------------------------------------GLRVGDELLQLDSVTKETFTDLPAIMELLRSRANKMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 204 HSP 2 Score: 74.3294 bits (181), Expect = 1.202e-66 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1 Query: 1687 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1788 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC Sbjct: 31 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 64 HSP 3 Score: 69.707 bits (169), Expect = 2.256e-13 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1 Query: 1270 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 1371 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN Sbjct: 138 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 171
BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000076172.1 (SMESG000076172.1) HSP 1 Score: 204.527 bits (519), Expect = 3.020e-62 Identity = 103/179 (57.54%), Postives = 129/179 (72.07%), Query Frame = 2 Query: 221 KSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757 +SYP+ + K NR K FS HK+RLR I PG VLILL+G +RG RV+FLKQLSSGLLLV GP+KLN P+RRVHQ VIAT TK+DI +EIP+ ++D YF Q+ EK + ++IFA K+ YV+ ++RK DQK IDS I+KAIK+R+DK KYL+T FSLS D PHKM F Sbjct: 13 RSYPLNAVMKKKANRTKLFSEHKRRLRSTITPGTVLILLTGRYRGTRVVFLKQLSSGLLLVNGPFKLNKVPMRRVHQNYVIATGTKIDISSIEIPERIEDAYF----QKAEKSKTKSDDIFAAKKQEYVLSDERKADQKLIDSAIVKAIKEREDKGVLVKYLRTPFSLSHGDKPHKMTF 187 The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of 60S ribosomal protein L6 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 1
BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 60S ribosomal protein L6 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of 60S ribosomal protein L6 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of 60S ribosomal protein L6 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010969 ID=SMED30010969|Name=60S ribosomal protein L6|organism=Schmidtea mediterranea sexual|type=transcript|length=1851bpback to top protein sequence of SMED30010969-orf-1 >SMED30010969-orf-1 ID=SMED30010969-orf-1|Name=SMED30010969-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=208bp MIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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