60S ribosomal protein L6

Overview


Name	60S ribosomal protein L6
Smed ID	SMED30010969
Length (bp)	1851

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of 60S ribosomal protein L6 (SMED30010969) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L6 (SMED30010969) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L6 (SMED30010969) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L6 (SMED30010969) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30010969

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 16

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30010969	SMESG000019835.1 SMESG000019834.1	SmedASXL_007005	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
pharynx	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
gut	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30010969	SMESG000019835.1	dd_Smed_v4_839_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30010969	SMESG000019835.1	Contig49518	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30010969	SMESG000019835.1	Contig49518	newmark_ests	PMID:29674431 Fincher et al., 2018
neoblast	SMED30010969	SMESG000019835.1	dd_Smed_v6_839_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
pharynx progenitor cell	SMED30010969	SMESG000019835.1	dd_Smed_v6_839_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018
muscle progenitor cell	SMED30010969	SMESG000019835.1	dd_Smed_v6_839_0	dd_Smed_v6	PMID:29674432 Plass et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: RPL6 (ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362])

HSP 1 Score: 170.629 bits (431), Expect = 9.873e-48
Identity = 99/209 (47.37%), Postives = 128/209 (61.24%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +K     K       K+RK    YP +   +K+  + KKPFS H ++LR  I PG +LI+L+G HRGKRV+FLKQL+SGLLLVTGP  LN  P+RR HQK VIATSTK+DI  ++IP HL D YF     R+P+  E        IF   K+ Y + E+RK DQK +DSQIL  IK          YL++ F+L++  YPHK+ F
Sbjct:   89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE------GEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQ---LQGYLRSVFALTNGIYPHKLVF 288

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Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +K     K       K+RK    YP +   +K+  + KKPFS H ++LR  I PG +LI+L+G HRGKRV+FLKQL+SGLLLVTGP  LN  P+RR HQK VIATSTK+DI  ++IP HL D YF     R+P+  E        IF   K+ Y + E+RK DQK +DSQIL  IK          YL++ F+L++  YPHK+ F
Sbjct:   89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE------GEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQ---LQGYLRSVFALTNGIYPHKLVF 288

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BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: RPL6 (ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362])

HSP 1 Score: 70.0922 bits (170), Expect = 1.609e-14
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2

Query:  221 KSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLL 400
            + YP +   +K+  + KKPFS H ++LR  I PG +LI+L+G HRGKRV+FLKQL+SGLLL
Sbjct:    3 RYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 63

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BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: PSMD9 (proteasome 26S subunit, non-ATPase 9 [Source:HGNC Symbol;Acc:HGNC:9567])

HSP 1 Score: 41.5874 bits (96), Expect = 1.360e-7
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = -1

Query: 1690 NYFNCQV*QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1812
            NY   +  +G+G+  PL+D EG+P ++VDL+ +R AR  HN
Sbjct:   40 NYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTAR--HN 78

HSP 2 Score: 34.6538 bits (78), Expect = 1.360e-7
Identity = 22/72 (30.56%), Postives = 37/72 (51.39%), Query Frame = -3

Query: 1430 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPP--FARVSRVDQASVA 1639
            LQND +A+M  +E  LH++HA +   +A +  +   E +  + G   S     + PP  FA+V+ +   S A
Sbjct:   82 LQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSES-----QGPPRAFAKVNSISPGSPA 148

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BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Match: PSMD9 (proteasome 26S subunit, non-ATPase 9 [Source:HGNC Symbol;Acc:HGNC:9567])

HSP 1 Score: 41.5874 bits (96), Expect = 1.774e-7
Identity = 18/41 (43.90%), Postives = 28/41 (68.29%), Query Frame = -1

Query: 1690 NYFNCQV*QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1812
            NY   +  +G+G+  PL+D EG+P ++VDL+ +R AR  HN
Sbjct:   40 NYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTAR--HN 78

HSP 2 Score: 34.6538 bits (78), Expect = 1.774e-7
Identity = 22/72 (30.56%), Postives = 37/72 (51.39%), Query Frame = -3

Query: 1430 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPP--FARVSRVDQASVA 1639
            LQND +A+M  +E  LH++HA +   +A +  +   E +  + G   S     + PP  FA+V+ +   S A
Sbjct:   82 LQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSES-----QGPPRAFAKVNSISPGSPA 148

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BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Match: rpl-6 (60S ribosomal protein L6 [Source:UniProtKB/Swiss-Prot;Acc:P47991])

HSP 1 Score: 158.688 bits (400), Expect = 9.358e-45
Identity = 84/173 (48.55%), Postives = 113/173 (65.32%), Query Frame = 2

Query:  248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ +N  K    H K   LR+ + PG VLI+L+G H+GKRV+FLKQL  SGLLLVTGP+K+NG P+RR+ Q  VIATS K+++  ++IP+H+ D+YF R+    +       NIFA  K  Y V E+RK+D K +D+ IL AIKK  +      YL T FSL  + YPHKM+F
Sbjct:   49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217

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Query:  248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ +N  K    H K   LR+ + PG VLI+L+G H+GKRV+FLKQL  SGLLLVTGP+K+NG P+RR+ Q  VIATS K+++  ++IP+H+ D+YF R+    +       NIFA  K  Y V E+RK+D K +D+ IL AIKK  +      YL T FSL  + YPHKM+F
Sbjct:   49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217

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Query:  248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ +N  K    H K   LR+ + PG VLI+L+G H+GKRV+FLKQL  SGLLLVTGP+K+NG P+RR+ Q  VIATS K+++  ++IP+H+ D+YF R+    +       NIFA  K  Y V E+RK+D K +D+ IL AIKK  +      YL T FSL  + YPHKM+F
Sbjct:   49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217

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Query:  248 KVSKNRKKPFSAHKKR--LREKIKPGVVLILLSGIHRGKRVIFLKQL-SSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ +N  K    H K   LR+ + PG VLI+L+G H+GKRV+FLKQL  SGLLLVTGP+K+NG P+RR+ Q  VIATS K+++  ++IP+H+ D+YF R+    +       NIFA  K  Y V E+RK+D K +D+ IL AIKK  +      YL T FSL  + YPHKM+F
Sbjct:   49 KLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK----TGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217

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BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
Match: RpL6 (gene:FBgn0039857 transcript:FBtr0085804)

HSP 1 Score: 176.022 bits (445), Expect = 1.118e-50
Identity = 90/196 (45.92%), Postives = 129/196 (65.82%), Query Frame = 2

Query:  170 KTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K +  V+K      K + SYP ++  K  +  K  FS HK+  R  + PG VLILL+G H+GKRV+ LK L+SGLLLVTGP+ LN CP+RRV Q+ VI TS+K+D+G  ++P+HL D YF R   + +K + +  +IFA  K+ +V  E+RK+DQK++D+ +LK IK   +   F+KYL+  F+L S  YPH+M F
Sbjct:   50 KKSPVVEKAKVPIKKSKASYPTKTFVK-KRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA-DIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMRF 243

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BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
Match: RpL6 (gene:FBgn0039857 transcript:FBtr0085805)

HSP 1 Score: 176.022 bits (445), Expect = 2.246e-50
Identity = 87/182 (47.80%), Postives = 124/182 (68.13%), Query Frame = 2

Query:  212 KIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K + SYP ++  K  +  K  FS HK+  R  + PG VLILL+G H+GKRV+ LK L+SGLLLVTGP+ LN CP+RRV Q+ VI TS+K+D+G  ++P+HL D YF R   + +K + +  +IFA  K+ +V  E+RK+DQK++D+ +LK IK   +   F+KYL+  F+L S  YPH+M F
Sbjct:   83 KSKASYPTKTFVK-KRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA-DIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHSSQYPHRMRF 262

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BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: rpl6 (ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671])

HSP 1 Score: 159.073 bits (401), Expect = 5.503e-44
Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 2

Query:  212 KIRKSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ + YP +  ++K+  +  K FS H+++LR+ I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  +N  P+RR HQK  IAT+TK+DI  ++IP  L D YF +  ++  K       IF   K+ Y + E+RK DQK +DSQ+L  IKK         YL++ FSLS+  YPHK+ F
Sbjct:   88 KMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHRGKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQ---LRGYLRSMFSLSNGVYPHKLVF 265

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Query:  212 KIRKSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ + YP +  ++K+  +  K FS H+++LR+ I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  +N  P+RR HQK  IAT+TK+DI  ++IP  L D YF +  ++  K       IF   K+ Y + E+RK DQK +DSQ+L  IKK         YL++ FSLS+  YPHK+ F
Sbjct:   88 KMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHRGKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQ---LRGYLRSMFSLSNGVYPHKLVF 265

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Query:  212 KIRKSYPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ + YP +  ++K+  +  K FS H+++LR+ I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  +N  P+RR HQK  IAT+TK+DI  ++IP  L D YF +  ++  K       IF   K+ Y + E+RK DQK +DSQ+L  IKK         YL++ FSLS+  YPHK+ F
Sbjct:   88 KMPRYYPTEDVRRKLRSHGIKAFSQHRRKLRKTITPGTVLIMLTGRHRGKRVVFLKQLDSGLLLVTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKADQKAVDSQLLPLIKKVPQ---LRGYLRSMFSLSNGVYPHKLVF 265

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BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: psmd9 (proteasome 26S subunit, non-ATPase 9 [Source:ZFIN;Acc:ZDB-GENE-030131-431])

HSP 1 Score: 44.2838 bits (103), Expect = 1.166e-9
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = -1

Query: 1687 GVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1785
            GVG+ GPL+D EGFP  +VDL+ +R AR   +C
Sbjct:   32 GVGMDGPLVDVEGFPRADVDLYKVRTARHSISC 64

HSP 2 Score: 38.891 bits (89), Expect = 1.166e-9
Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = -3

Query: 1424 LQNDLRAIMLDIESKLHEIHALNIRT--EANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQ 1639
            LQND +AIM++IE  LH++HA    T  + +  +++SG+ V T              PPFA V  V   S A Q
Sbjct:   65 LQNDHKAIMVEIEEALHKLHATAKVTHEQDDTQMESSGQTVETP-------------PPFALVDAVTHGSPAAQ 125

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Match: psmd9 (proteasome 26S subunit, non-ATPase 9 [Source:ZFIN;Acc:ZDB-GENE-030131-431])

HSP 1 Score: 44.2838 bits (103), Expect = 1.220e-9
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = -1

Query: 1687 GVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1785
            GVG+ GPL+D EGFP  +VDL+ +R AR   +C
Sbjct:   45 GVGMDGPLVDVEGFPRADVDLYKVRTARHSISC 77

HSP 2 Score: 38.891 bits (89), Expect = 1.220e-9
Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = -3

Query: 1424 LQNDLRAIMLDIESKLHEIHALNIRT--EANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQ 1639
            LQND +AIM++IE  LH++HA    T  + +  +++SG+ V T              PPFA V  V   S A Q
Sbjct:   78 LQNDHKAIMVEIEEALHKLHATAKVTHEQDDTQMESSGQTVETP-------------PPFALVDAVTHGSPAAQ 138

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BLAST of 60S ribosomal protein L6 vs. Ensembl Xenopus
Match: mrrf (mitochondrial ribosome recycling factor [Source:Xenbase;Acc:XB-GENE-1008997])

HSP 1 Score: 132.109 bits (331), Expect = 2.548e-34
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF 529
            L T +KT    K       K+RK    YP +   +K+  + KKPFS HK++LR  I PG VLILL+G HRGKRV+FLKQL +GLLLVTGP  +N  P+RR HQK  IATSTK+DI  ++IP HL D YF
Sbjct:   60 LVTVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHKRKLRSSITPGTVLILLNGRHRGKRVVFLKQLQTGLLLVTGPLAINRVPLRRAHQKFAIATSTKIDISSVKIPKHLTDSYF 188

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Rpl6 (ribosomal protein L6 [Source:MGI Symbol;Acc:MGI:108057])

HSP 1 Score: 174.481 bits (441), Expect = 3.114e-49
Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +KT    K       K+RK    YP +   +K+  + KKPFS H +RLR  I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  +N  P+RR HQK VIATSTK+DI +++IP HL D YF     R+P+  E        IF   K+ Y + E+RK DQK +D QIL  IK          YL++ FSL++  YPHK+ F
Sbjct:   97 LATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQE------GEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQ---LQGYLRSQFSLTNGMYPHKLVF 296

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Rpl6 (ribosomal protein L6 [Source:MGI Symbol;Acc:MGI:108057])

HSP 1 Score: 70.0922 bits (170), Expect = 1.128e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 2

Query:  272 PFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVT 406
            PFS H +RLR  I PG VLI+L+G HRGKRV+FLKQL SGLLLVT
Sbjct:    1 PFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVT 45

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Psmd9 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Source:MGI Symbol;Acc:MGI:1914401])

HSP 1 Score: 40.0466 bits (92), Expect = 3.233e-6
Identity = 18/41 (43.90%), Postives = 27/41 (65.85%), Query Frame = -1

Query: 1690 NYFNCQV*QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1812
            NY   +  +G+G+  PL+D EG+P  +VDL+ +R AR  HN
Sbjct:   40 NYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTAR--HN 78

HSP 2 Score: 31.187 bits (69), Expect = 3.233e-6
Identity = 20/72 (27.78%), Postives = 37/72 (51.39%), Query Frame = -3

Query: 1430 LGLQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVA 1645
            + LQND +A+M  +E  LH++HA +   +A +  +   E ++    ++   +  A    FARV+ +   S A
Sbjct:   80 ICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSPVLPQA----FARVNSISPGSPA 147

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Match: Psmd9 (proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Source:MGI Symbol;Acc:MGI:1914401])

HSP 1 Score: 39.6614 bits (91), Expect = 4.263e-6
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = -1

Query: 1690 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHN 1788
            +G+G+  PL+D EG+P  +VDL+ +R AR  HN
Sbjct:    2 KGIGMNEPLVDCEGYPRADVDLYQVRTAR--HN 32

HSP 2 Score: 31.187 bits (69), Expect = 4.263e-6
Identity = 20/72 (27.78%), Postives = 37/72 (51.39%), Query Frame = -3

Query: 1430 LGLQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVA 1645
            + LQND +A+M  +E  LH++HA +   +A +  +   E ++    ++   +  A    FARV+ +   S A
Sbjct:   34 ICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSPVLPQA----FARVNSISPGSPA 101

[Close]

BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|P21533|RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus OX=10116 GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 178.718 bits (452), Expect = 5.527e-50
Identity = 101/205 (49.27%), Postives = 129/205 (62.93%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +KT    K       K+RK    YP +   +K+  + KKPFS H +RLR  I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  LN  P+RR HQK VIATSTK+DI +++IP HL D YF ++P +  +       IF   K+ Y + E+RK DQK +DSQIL  IK          YL++ FSL++  YPHK+ F
Sbjct:   99 LATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQE--GEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQ---LQGYLRSQFSLTNGMYPHKLVF 298

[Close]

BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|Q2YGT9|RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 8.714e-49
Identity = 101/209 (48.33%), Postives = 130/209 (62.20%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +K     K       K+RK    YP +   +K+  + KKPFS H ++LR  I PG +LI+L+G HRGKRVIFLKQLSSGLLLVTGP  LN  P+RR HQK VIATSTK+DI  ++IP+HL D YF     R+P+  E        IF   K+ Y + E+RK DQK +DSQIL+ IK          YL++ F+L++  YPHK+ F
Sbjct:   85 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQE------GEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQ---LQGYLRSVFALTNGIYPHKLVF 284

[Close]

BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|P47911|RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus OX=10090 GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.178e-48
Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +KT    K       K+RK    YP +   +K+  + KKPFS H +RLR  I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  +N  P+RR HQK VIATSTK+DI +++IP HL D YF     R+P+  E        IF   K+ Y + E+RK DQK +D QIL  IK          YL++ FSL++  YPHK+ F
Sbjct:   97 LATVTKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQE------GEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQ---LQGYLRSQFSLTNGMYPHKLVF 296

[Close]

BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|Q6QMZ4|RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera OX=34839 GN=RPL6 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 6.175e-48
Identity = 100/209 (47.85%), Postives = 128/209 (61.24%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +K     K       K+RK    YP +   +K+  + KKPFS H ++LR  I PG VLI+L+G HRGKRV+FLKQL+SGLLLVTGP  LN  P+RR HQK VIATSTK+DI  ++IP HL D YF     R+P+  E        IF   K+ Y + E+RK DQK +DSQIL  IK          YL++ F+L++  YPHK+ F
Sbjct:   89 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE------GEIFDTEKERYQISEQRKVDQKAVDSQILPKIKAVPQ---LRGYLRSVFALTNGIYPHKLVF 288

[Close]

BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Match: sp|Q58DQ3|RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus OX=9913 GN=RPL6 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 1.283e-47
Identity = 98/209 (46.89%), Postives = 129/209 (61.72%), Query Frame = 2

Query:  155 LATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            LAT +K     K       K+RK    YP +   +K+  + KKPFS H ++LR  I PG +LI+L+G HRGKRV+FLKQL SGLLLVTGP  LN  P+RR HQK VIATSTK+DI  ++IP+HL D YF     R+P+  E        IF   ++ Y + E+RK DQK +DSQIL+ IK          YL++ F+L++  YPHK+ F
Sbjct:   88 LATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQE------GEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQ---LQGYLRSVFALTNGIYPHKVVF 287

[Close]

BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A2I9LPM6 (60S ribosomal protein L6 OS=Centruroides hentzi OX=88313 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.744e-53
Identity = 99/183 (54.10%), Postives = 130/183 (71.04%), Query Frame = 2

Query:  212 KIRKSYPVQSQKKVSKNRKK-PFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K R+ YP + + K+ K+RK   FS HK+ LR++I PG VLILL+G HRGKRV+FLKQL SGLLLVTGP+K+NGCP+RR++Q  VIATSTKLDI E++IP HL D YF R+  + EK   D   IF    + Y V EKRK+DQ ++D Q+++AIKK  +K     YL + F L +  YPH+M+F
Sbjct:   82 KQRRYYPTEDRPKLKKSRKMVSFSKHKRYLRKRITPGTVLILLAGRHRGKRVVFLKQLQSGLLLVTGPFKVNGCPLRRINQIYVIATSTKLDISEVKIPAHLNDKYFNRKHSKKEK--KDEGEIFELKSEEYTVNEKRKKDQIEVDRQLIEAIKKNPEKKMLFSYLASVFQLRNKMYPHRMKF 262

[Close]

BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A0B6XXD3 (Uncharacterized protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF4434 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.298e-52
Identity = 92/182 (50.55%), Postives = 127/182 (69.78%), Query Frame = 2

Query:  212 KIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            ++ + YP + + +   +RKKPFS H++ LR  IKPG VLILL+G H+GKRV+FLKQL +GLLLVTGPY LNGCP+RR++Q  VIAT T++DI +++IP+ + DDYF R+  +  K +    +IF   K+ Y V  +RKEDQ  +D QIL AI++  +K     YL   FSLS+H +PHKM F
Sbjct:   35 RLSRFYPTEDKPRKLLSRKKPFSQHRRHLRSSIKPGTVLILLAGRHKGKRVVFLKQLKTGLLLVTGPYHLNGCPLRRINQIYVIATKTRIDIKDVKIPERVNDDYFRRQKLRKPKHAE--GDIFNTKKEVYAVSNERKEDQTAVDRQILDAIRQNPEKKLLFGYLGALFSLSNHQFPHKMVF 214

[Close]

BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A1W7R9Q1 (60S ribosomal protein L6 OS=Hadrurus spadix OX=141984 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.568e-52
Identity = 98/183 (53.55%), Postives = 129/183 (70.49%), Query Frame = 2

Query:  212 KIRKSYPVQSQKKVSKNRKK-PFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K R+ YP + + K+ K+RK  PF+ HK+ LR++I PG VLILL+G HRGKRVIFLKQL SGLLLVTGP+K+NGCP+RR++Q  VIATSTKLD+ ++ IP HL D YF R+  + EK   D   IF    + Y V E+RK+DQ ++D QIL+ IKK  +K     YL + F L +  YPH+M+F
Sbjct:   78 KQRRYYPTEDRPKLKKSRKMIPFAKHKRYLRKRITPGTVLILLAGRHRGKRVIFLKQLPSGLLLVTGPFKINGCPLRRINQIYVIATSTKLDLTDINIPAHLNDRYFNRKHAKKEK---DEAEIFETKSEEYAVTEQRKKDQIEVDKQILETIKKHPEKKMMLAYLGSVFQLRNKMYPHRMKF 257

[Close]

BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A1Z5LG56 (60S ribosomal protein L6 (Fragment) OS=Ornithodoros moubata OX=6938 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.861e-52
Identity = 95/183 (51.91%), Postives = 130/183 (71.04%), Query Frame = 2

Query:  212 KIRKSYPVQSQKKVSKNRK-KPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K R+SYP + + ++ K RK KP   H   LR++I PG VLILL+G+HRGKRV+FLKQL +GLLLVTGPY +NGCP+RRV+Q  VIATSTK+DI  +++P+HL D YF R+P+  +K   D  +IF    +   V E+RK+DQ ++D Q+L AIK   +K     YL ++FSL +H YPHK++F
Sbjct:   97 KERRSYPTEDKPRLMKTRKMKPSCLHPISLRKRITPGTVLILLAGVHRGKRVVFLKQLKTGLLLVTGPYTVNGCPMRRVNQTYVIATSTKIDISAVKVPEHLNDKYF-RKPRH-KKQRKDDGDIFESKPEEPAVSEQRKKDQLEVDKQVLAAIKAHPEKGMMRHYLASTFSLRNHMYPHKLKF 277

[Close]

BLAST of 60S ribosomal protein L6 vs. TrEMBL
Match: A0A3S1BKF4 (Uncharacterized protein OS=Elysia chlorotica OX=188477 GN=EGW08_006356 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.896e-52
Identity = 90/182 (49.45%), Postives = 130/182 (71.43%), Query Frame = 2

Query:  212 KIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            ++ + YP + + +  KN K  F+ HK++LRE I PG +LIL++G H+GKRV+FLKQL++GLLLVTGPY LNGCP+RR++Q+ VIAT TKLDI  +++PD + D+YF R  Q+ +K      +IF+  K+ Y V ++RKEDQ  +D QIL  I+K+ +K     YL + FSLS++ +PHKM F
Sbjct:   29 RMPRWYPTEDKPRKLKNHKIAFNQHKRKLRESITPGTILILVAGRHKGKRVVFLKQLNTGLLLVTGPYHLNGCPLRRINQRYVIATKTKLDIKGVKVPDRVNDEYFKR--QKSKKPKHTEGDIFSTEKEVYTVSDERKEDQANVDRQILDVIRKQKEKKLLFGYLGSMFSLSNNQFPHKMVF 208

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
Match: rpl6 (ribosomal protein L6 [Source:NCBI gene;Acc:103032571])

HSP 1 Score: 160.229 bits (404), Expect = 1.369e-44
Identity = 87/183 (47.54%), Postives = 119/183 (65.03%), Query Frame = 2

Query:  212 KIRKSYPVQSQ-KKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K+ + YP ++  +K+  +  KPFS H+++LR  I PG VLI+L+G HRGKRV+FLKQL SGLLLVTGP  +N  P+RR HQK  IATSTKLDI  ++IP +L D YF +  ++  K       IF   K+ Y + E+RKEDQK +D Q+L  I+   +      YL++ F LS+  YPHK+ F
Sbjct:   83 KMPRYYPTENPPRKLRSHGIKPFSQHRRKLRSSISPGTVLIMLTGRHRGKRVVFLKQLGSGLLLVTGPLAINRVPLRRAHQKFCIATSTKLDISGVKIPKNLNDAYFKK--KKLRKPKHQEGEIFDTEKEKYQLTEQRKEDQKAVDKQLLPLIR---NFPHLKGYLRSQFFLSNGVYPHKLIF 260

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
Match: psmd9 (proteasome 26S subunit, non-ATPase 9 [Source:NCBI gene;Acc:103022112])

HSP 1 Score: 41.9726 bits (97), Expect = 3.276e-9
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = -1

Query: 1687 YFNCQV*QG-VGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1809
            Y++    QG VG+  PL+D EG+P  +VDLF IR AR   +C
Sbjct:   36 YYDVLEDQGDVGMDAPLVDVEGYPRADVDLFQIRTARHSISC 77

HSP 2 Score: 39.2762 bits (90), Expect = 3.276e-9
Identity = 29/72 (40.28%), Postives = 39/72 (54.17%), Query Frame = -3

Query: 1424 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQ 1639
            LQND +AIM++IE  LH++HA   R +A +  D +     TE      ++     PPFARV  V Q S A Q
Sbjct:   78 LQNDHKAIMVEIEEALHKLHA---REKAKHDQDQAE--AQTERMEQEPSL----PPPFARVDAVTQGSPAYQ 140

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
Match: RPL6A (Ribosomal 60S subunit protein L6A; N-terminally acetylated; binds 5.8S rRNA; homologous to mammalian ribosomal protein L6, no bacterial homolog; RPL6A has a paralog, RPL6B, that arose from the whole genome duplication [Source:SGD;Acc:S000004538])

HSP 1 Score: 119.013 bits (297), Expect = 1.519e-31
Identity = 72/185 (38.92%), Postives = 110/185 (59.46%), Query Frame = 2

Query:  203 SKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            S  K  K YP +    + K RK   +A  ++LR  + PG VLILL+G  RGKRV++LK L    LL++GP+K+NG P+RRV+ + VIATSTK+ +  + + +    +YFA+  ++  K      N+F + ++N  +K +R EDQK +D  ++  IKK        +YL  SFSL + D PH ++F
Sbjct:    2 SAQKAPKWYPSEDVAALKKTRK---AARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAK--EKLTKKEKKEANLFPE-QQNKEIKAERVEDQKVVDKALIAEIKK---TPLLKQYLSASFSLKNGDKPHMLKF 176

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
Match: RPL6B (Ribosomal 60S subunit protein L6B; binds 5.8S rRNA; homologous to mammalian ribosomal protein L6, no bacterial homolog; RPL6B has a paralog, RPL6A, that arose from the whole genome duplication [Source:SGD;Acc:S000004440])

HSP 1 Score: 115.546 bits (288), Expect = 2.198e-30
Identity = 71/179 (39.66%), Postives = 104/179 (58.10%), Query Frame = 2

Query:  221 KSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            K YP +      K RK   +   ++LR  + PG VLILL+G  RGKRV++LK L    LLVTGP+K+NG P+RRV+ + VIATSTK+ +  + + +    +YFA+  ++  K      N+F + +    +K +R EDQK +D  +L  IKK        +YL  SFSL + D PH ++F
Sbjct:    8 KWYPSEDVAAPKKTRK---AVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAK--EKLTKKEKKEANLFPEQQTKE-IKTERVEDQKVVDKALLAEIKK---TPLLKQYLSASFSLKNGDKPHLLKF 176

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Nematostella
Match: EDO41373 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4S4])

HSP 1 Score: 149.443 bits (376), Expect = 2.965e-41
Identity = 86/179 (48.04%), Postives = 114/179 (63.69%), Query Frame = 2

Query:  227 YPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDD--YFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            YP +  ++   NRKKP  A   +LR  I PG VLILL+G HRGKRV+FLKQL+SGLLLVTGP+K+NG P+RR+ Q  VIATST +D+ ++++P+H   D  YF  EP++ +K S D+    A+ KK     E+R  DQK +D QIL  I    +     KYL + FSL    +PH M F
Sbjct:   76 YPTEDVRRRLANRKKPGMA---KLRSSITPGTVLILLAGAHRGKRVVFLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKK-KKRSEDMFEEAAEEKKP---SEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPHDMVF 244

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: rpl6 (ribosomal protein L6 [Source:NCBI gene;Acc:101172170])

HSP 1 Score: 167.933 bits (424), Expect = 2.127e-47
Identity = 100/208 (48.08%), Postives = 127/208 (61.06%), Query Frame = 2

Query:  158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            AT  KT    K       K+RK    YP +   +K+  + KKPF  HK++LR  I PG VLILL+G HRGKRV+FLKQLSSGLLLVTGP  LN  P+RR HQK VIAT+TK+DI  ++IP  L D YF     R P+  E        IF   K+ Y + E+RKE QK++DS++L  IKK         YL++SF L++  YPHK+ F
Sbjct:   62 ATVVKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPFCQHKRKLRASITPGTVLILLTGRHRGKRVVFLKQLSSGLLLVTGPLALNRVPLRRAHQKFVIATNTKVDITGMKIPKTLNDAYFKKKKLRRPRHQE------GEIFDTEKEKYQLTEERKEIQKEVDSKLLPLIKKVPQ---LKGYLRSSFYLTNGVYPHKLVF 260

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000027450.1 (pep primary_assembly:ASM223467v1:10:1314901:1318310:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000027450.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.2478 bits (173), Expect = 1.642e-13
Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2

Query:  158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            AT  KT    K       K+RK    YP +   +K+  + KKP   HK++LR                   RV+FLKQLSS  LL                           DI  ++IP  L D YF     R P+Q E        IF   KK Y + E+RKE QK+++S++L  IKK        +YL++SF L++  YPHK+ F
Sbjct:   59 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 211

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000027419.1 (pep primary_assembly:ASM223467v1:10:1314901:1317268:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000027419.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.2478 bits (173), Expect = 2.118e-13
Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2

Query:  158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            AT  KT    K       K+RK    YP +   +K+  + KKP   HK++LR                   RV+FLKQLSS  LL                           DI  ++IP  L D YF     R P+Q E        IF   KK Y + E+RKE QK+++S++L  IKK        +YL++SF L++  YPHK+ F
Sbjct:   64 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 216

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000041303.1 (pep primary_assembly:ASM223467v1:10:1314901:1316465:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000041303.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.8626 bits (172), Expect = 2.713e-13
Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2

Query:  158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            AT  KT    K       K+RK    YP +   +K+  + KKP   HK++LR                   RV+FLKQLSS  LL                           DI  ++IP  L D YF     R P+Q E        IF   KK Y + E+RKE QK+++S++L  IKK        +YL++SF L++  YPHK+ F
Sbjct:   63 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 215

[Close]

BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Match: ENSORLT00000045286.1 (pep primary_assembly:ASM223467v1:10:1314901:1319647:-1 gene:ENSORLG00000020235.2 transcript:ENSORLT00000045286.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.8626 bits (172), Expect = 2.817e-13
Identity = 67/208 (32.21%), Postives = 91/208 (43.75%), Query Frame = 2

Query:  158 ATESKTTSAVKKTTESKGKIRKS---YPVQS-QKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYF----AREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            AT  KT    K       K+RK    YP +   +K+  + KKP   HK++LR                   RV+FLKQLSS  LL                           DI  ++IP  L D YF     R P+Q E        IF   KK Y + E+RKE QK+++S++L  IKK        +YL++SF L++  YPHK+ F
Sbjct:   70 ATVWKTVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLKSHGKKPVCQHKRKLR-------------------RVVFLKQLSSVPLL---------------------------DITGMKIPKTLNDAYFKKKKLRGPRQQE------GEIFHTEKKKYQLTEQRKEIQKEVNSKLLPLIKKVPQ---LKEYLRSSFYLTNGVYPHKLVF 222

[Close]

BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000019835.1 (SMESG000019835.1)

HSP 1 Score: 417.157 bits (1071), Expect = 4.628e-143
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 2

Query:  134 EMIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            EMIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF
Sbjct:   84 EMIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 291

[Close]

BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000019834.1 (SMESG000019834.1)

HSP 1 Score: 199.519 bits (506), Expect = 1.019e-66
Identity = 111/176 (63.07%), Postives = 117/176 (66.48%), Query Frame = -3

Query: 1121 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQCVSISIN*HG*IEMCSXXXXXXXXXXXX**RYQRNVYGSASNYGIVALSCQCKSTFFNWN*SLFIV---F*KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 1639
            LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC                                    G      ++ L    K TF +    + ++     KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI
Sbjct:   55 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC------------------------------------GLRVGDELLQLDSVTKETFTDLPAIMELLRSRANKMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 194

HSP 2 Score: 74.3294 bits (181), Expect = 1.019e-66
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1

Query: 1687 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1788
            QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC
Sbjct:   21 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 54

HSP 3 Score: 69.707 bits (169), Expect = 2.007e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1

Query: 1270 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 1371
            GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN
Sbjct:  128 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 161

[Close]

BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000019834.1 (SMESG000019834.1)

HSP 1 Score: 199.519 bits (506), Expect = 1.202e-66
Identity = 111/176 (63.07%), Postives = 117/176 (66.48%), Query Frame = -3

Query: 1121 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQCVSISIN*HG*IEMCSXXXXXXXXXXXX**RYQRNVYGSASNYGIVALSCQCKSTFFNWN*SLFIV---F*KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 1639
            LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC                                    G      ++ L    K TF +    + ++     KMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI
Sbjct:   65 LQNDLRAIMLDIESKLHEIHALNIRTEANNPIDNSGEIVHTETGNDGSAIFIARHPPFARVSRVDQASVADQC------------------------------------GLRVGDELLQLDSVTKETFTDLPAIMELLRSRANKMVLVCVKRCNKRVHLTIVPPLTGPIGCMLVPI 204

HSP 2 Score: 74.3294 bits (181), Expect = 1.202e-66
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1

Query: 1687 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 1788
            QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC
Sbjct:   31 QGVGVTGPLIDSEGFPLNNVDLFSIREARLKHNC 64

HSP 3 Score: 69.707 bits (169), Expect = 2.256e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -1

Query: 1270 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 1371
            GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN
Sbjct:  138 GLRVGDELLQLDSVTKETFTDLPAIMELLRSRAN 171

[Close]

BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Match: SMESG000076172.1 (SMESG000076172.1)

HSP 1 Score: 204.527 bits (519), Expect = 3.020e-62
Identity = 103/179 (57.54%), Postives = 129/179 (72.07%), Query Frame = 2

Query:  221 KSYPVQSQKKVSKNRKKPFSAHKKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPIRRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFAKSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHDYPHKMEF 757
            +SYP+ +  K   NR K FS HK+RLR  I PG VLILL+G +RG RV+FLKQLSSGLLLV GP+KLN  P+RRVHQ  VIAT TK+DI  +EIP+ ++D YF    Q+ EK  +  ++IFA  K+ YV+ ++RK DQK IDS I+KAIK+R+DK    KYL+T FSLS  D PHKM F
Sbjct:   13 RSYPLNAVMKKKANRTKLFSEHKRRLRSTITPGTVLILLTGRYRGTRVVFLKQLSSGLLLVNGPFKLNKVPMRRVHQNYVIATGTKIDISSIEIPERIEDAYF----QKAEKSKTKSDDIFAAKKQEYVLSDERKADQKLIDSAIVKAIKEREDKGVLVKYLRTPFSLSHGDKPHKMTF 187

The following BLAST results are available for this feature:

BLAST of 60S ribosomal protein L6 vs. Ensembl Human
BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
BLAST of 60S ribosomal protein L6 vs. Ensembl Xenopus
BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
BLAST of 60S ribosomal protein L6 vs. TrEMBL
BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
BLAST of 60S ribosomal protein L6 vs. Ensembl Sea Lamprey
BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
BLAST of 60S ribosomal protein L6 vs. Ensembl Nematostella
BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
BLAST of 60S ribosomal protein L6 vs. Planmine SMEST

BLAST of 60S ribosomal protein L6 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RPL6	9.873e-48	47.37	ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:...	[more]
RPL6	9.873e-48	47.37	ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:...	[more]
RPL6	1.609e-14	55.74	ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:...	[more]
PSMD9	1.360e-7	43.90	proteasome 26S subunit, non-ATPase 9 [Source:HGNC ...	[more]
PSMD9	1.774e-7	43.90	proteasome 26S subunit, non-ATPase 9 [Source:HGNC ...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rpl-6	9.358e-45	48.55	60S ribosomal protein L6 [Source:UniProtKB/Swiss-...	[more]
rpl-6	9.358e-45	48.55	60S ribosomal protein L6 [Source:UniProtKB/Swiss-...	[more]
rpl-6	9.358e-45	48.55	60S ribosomal protein L6 [Source:UniProtKB/Swiss-...	[more]
rpl-6	9.358e-45	48.55	60S ribosomal protein L6 [Source:UniProtKB/Swiss-...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
RpL6	1.118e-50	45.92	gene:FBgn0039857 transcript:FBtr0085804	[more]
RpL6	2.246e-50	47.80	gene:FBgn0039857 transcript:FBtr0085805	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl6	5.503e-44	47.54	ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
rpl6	5.503e-44	47.54	ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
rpl6	5.503e-44	47.54	ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030...	[more]
psmd9	1.166e-9	54.55	proteasome 26S subunit, non-ATPase 9 [Source:ZFIN;...	[more]
psmd9	1.220e-9	54.55	proteasome 26S subunit, non-ATPase 9 [Source:ZFIN;...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1


Match Name	E-value	Identity	Description
mrrf	2.548e-34	54.26	mitochondrial ribosome recycling factor [Source:Xe...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Rpl6	3.114e-49	48.33	ribosomal protein L6 [Source:MGI Symbol;Acc:MGI:10...	[more]
Rpl6	1.128e-14	73.33	ribosomal protein L6 [Source:MGI Symbol;Acc:MGI:10...	[more]
Psmd9	3.233e-6	43.90	proteasome (prosome, macropain) 26S subunit, non-A...	[more]
Psmd9	4.263e-6	48.48	proteasome (prosome, macropain) 26S subunit, non-A...	[more]

BLAST of 60S ribosomal protein L6 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P21533\|RL6_RAT	5.527e-50	49.27	60S ribosomal protein L6 OS=Rattus norvegicus OX=1...	[more]
sp\|Q2YGT9\|RL6_PIG	8.714e-49	48.33	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=...	[more]
sp\|P47911\|RL6_MOUSE	2.178e-48	48.33	60S ribosomal protein L6 OS=Mus musculus OX=10090 ...	[more]
sp\|Q6QMZ4\|RL6_CHILA	6.175e-48	47.85	60S ribosomal protein L6 OS=Chinchilla lanigera OX...	[more]
sp\|Q58DQ3\|RL6_BOVIN	1.283e-47	46.89	60S ribosomal protein L6 OS=Bos taurus OX=9913 GN=...	[more]

BLAST of 60S ribosomal protein L6 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A2I9LPM6	3.744e-53	54.10	60S ribosomal protein L6 OS=Centruroides hentzi OX...	[more]
A0A0B6XXD3	1.298e-52	50.55	Uncharacterized protein (Fragment) OS=Arion vulgar...	[more]
A0A1W7R9Q1	1.568e-52	53.55	60S ribosomal protein L6 OS=Hadrurus spadix OX=141...	[more]
A0A1Z5LG56	2.861e-52	51.91	60S ribosomal protein L6 (Fragment) OS=Ornithodoro...	[more]
A0A3S1BKF4	2.896e-52	49.45	Uncharacterized protein OS=Elysia chlorotica OX=18...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
rpl6	1.369e-44	47.54	ribosomal protein L6 [Source:NCBI gene;Acc:1030325...	[more]
psmd9	3.276e-9	47.62	proteasome 26S subunit, non-ATPase 9 [Source:NCBI ...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of 60S ribosomal protein L6 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2


Match Name	E-value	Identity	Description
RPL6A	1.519e-31	38.92	Ribosomal 60S subunit protein L6A; N-terminally ac...	[more]
RPL6B	2.198e-30	39.66	Ribosomal 60S subunit protein L6B; binds 5.8S rRNA...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO41373	2.965e-41	48.04	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of 60S ribosomal protein L6 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rpl6	2.127e-47	48.08	ribosomal protein L6 [Source:NCBI gene;Acc:1011721...	[more]
ENSORLT00000027450.1	1.642e-13	32.21	pep primary_assembly:ASM223467v1:10:1314901:131831...	[more]
ENSORLT00000027419.1	2.118e-13	32.21	pep primary_assembly:ASM223467v1:10:1314901:131726...	[more]
ENSORLT00000041303.1	2.713e-13	32.21	pep primary_assembly:ASM223467v1:10:1314901:131646...	[more]
ENSORLT00000045286.1	2.817e-13	32.21	pep primary_assembly:ASM223467v1:10:1314901:131964...	[more]

BLAST of 60S ribosomal protein L6 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4


Match Name	E-value	Identity	Description
SMESG000019835.1	4.628e-143	100.00	SMESG000019835.1	[more]
SMESG000019834.1	1.019e-66	63.07	SMESG000019834.1	[more]
SMESG000019834.1	1.202e-66	63.07	SMESG000019834.1	[more]
SMESG000076172.1	3.020e-62	57.54	SMESG000076172.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30010969 ID=SMED30010969|Name=60S ribosomal protein L6|organism=Schmidtea mediterranea sexual|type=transcript|length=1851bp
CTGCTGTAAAGGAAATTGATGAGTAATTTTAAATATTTTTTATAATCAAT
ATTTAATTTCTATTGAGTAATATCCATTTTGCATTTATAAAGTTGCATAA
TTATCATTATTTTGTTGATACTGTAAATTTAGGGAAATGATTGAACCCGT
GAAGCTTGCTACGGAAAGTAAGACAACTAGTGCTGTTAAAAAGACAACTG
AATCCAAAGGAAAGATTCGAAAATCATATCCTGTCCAAAGTCAAAAGAAG
GTGTCCAAAAATCGGAAAAAGCCATTTTCTGCGCATAAAAAACGGTTACG
AGAGAAAATTAAACCTGGAGTTGTATTGATTTTGCTATCGGGAATTCATC
GTGGCAAACGAGTCATCTTCCTTAAGCAGTTGTCATCCGGATTGCTGCTC
GTAACTGGACCATACAAACTGAATGGCTGTCCAATTCGTCGTGTCCACCA
AAAAATGGTCATTGCTACGTCGACTAAACTCGACATCGGTGAACTAGAAA
TTCCGGATCATTTGAAAGACGATTATTTCGCTCGAGAACCCCAACAAGAC
GAGAAGTTAAGTTCCGATGTAAATAACATTTTCGCAAAATCGAAAAAGAA
TTATGTTGTCAAGGAGAAGCGTAAAGAAGATCAGAAAAAGATTGATTCGC
AAATTCTCAAAGCGATCAAAAAGCGGGATGACAAAGCGACATTTAGTAAA
TATTTGAAAACGTCGTTCTCGCTGTCGTCTCATGATTATCCGCATAAAAT
GGAATTTTGATGTGCAATAAATGTTGGAGTGTTGTAAATGTTGTTTTTTT
TAAAAATAAATTATCATGGCTCTGCATGTTCTTTCAGCTGTTGCTTTATG
AATCTATGAAAAATGCAATGTCGCTATGGATATGGTTTTGGCGAATGAAT
CGTTTTTACTGATTGAAATTATTTGCGCGGTATCTGCTGTCTGACAAATC
AACGGAACATATAGACTAAGTGTATACGAGACATGTCACAACAGCTTATT
CTGTAATCGTTGCAGCTGCCAGAAACTCCTCAATAAAATATTTCAAACAA
TCAATAACGTTCCAAAATACAAATGAAGTCAAAGCAAAATTTATTCAAAA
TATTGATCCCATCAGTCCTAGATCGGCACGAGCATGCATCCGATGGGGCC
CGTCAAGGGTGGAACAATAGTCAAATGAACTCGCTTGTTGCACCGCTTGA
CACAGACAAGCACCATTTTCTAGAATACAATAAATAAACTTTAATTCCAA
TTGAAAAATGTCGACTTACATTGGCACGAGAGCGCAACAATTCCATAATT
GCTGGCAGATCCGTAAACGTTTCTTTGGTAACGCTATCAAGTTGTAGCAA
TTCGTCACCCACGCGCAGCCCCTGCGGAACACATTTCAATTTACCCATGT
CAATTGATTGATATACTCACGCATTGATCCGCCACTGAAGCTTGATCTAC
CCGACTCACTCTCGCAAATGGTGGGTGGCGAGCAATAAATATTGCTGATC
CGTCATTGCCAGTTTCTGTATGCACAATTTCTCCTGAATTGTCAATTGGA
TTATTGGCCTCCGTCCTAATATTCAATGCGTGAATTTCATGCAATTTGCT
TTCAATATCCAACATGATCGCTCTCAAATCATTTTGCAAGCCTAAACATC
ACAGTTTTATTAACCTCTACACTAAATATTTAAATTACAATTATGCTTCA
ATCTCGCTTCTCTAATAGAAAATAGATCAACATTATTAAGTGGAAAACCT
TCTGAGTCGATTAATGGCCCTGTTACACCAACTCCTTGCTAAACTTGACA
ATTAAAATAATTGAATTTAAATAAAAATTGAATTTACCGAAAAAAAAAGA
T

protein sequence of SMED30010969-orf-1

>SMED30010969-orf-1 ID=SMED30010969-orf-1|Name=SMED30010969-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=208bp
MIEPVKLATESKTTSAVKKTTESKGKIRKSYPVQSQKKVSKNRKKPFSAH
KKRLREKIKPGVVLILLSGIHRGKRVIFLKQLSSGLLLVTGPYKLNGCPI
RRVHQKMVIATSTKLDIGELEIPDHLKDDYFAREPQQDEKLSSDVNNIFA
KSKKNYVVKEKRKEDQKKIDSQILKAIKKRDDKATFSKYLKTSFSLSSHD
YPHKMEF*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000019	muscle progenitor cell
PLANA:0000020	protonephridia
PLANA:0000099	neuron
PLANA:0000101	muscle cell
PLANA:0000110	pharynx progenitor cell
PLANA:0000429	neoblast
PLANA:0002109	X1 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR041997	KOW_RPL6
IPR014722	Rib_L2_dom2
IPR000915	60S_ribosomal_L6E
IPR008991	Translation_prot_SH3-like_sf

Vocabulary: **biological process**
Term	Definition
GO:0006412	translation

Vocabulary: **molecular function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **cellular component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0030529	intracellular ribonucleoprotein complex

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 95..207 e-value: 2.8E-36 score: 124.4
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 11..207
IPR014722	Ribosomal protein L2, domain 2	GENE3D	G3DSA:2.30.30.30		coord: 56..134 e-value: 3.4E-9 score: 38.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	PANTHER	PTHR10715:SF0	60S RIBOSOMAL PROTEIN L6	coord: 11..207
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 50..207 e-value: 6.7246E-70 score: 208.171
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	coord: 56..132

Main menu

60S ribosomal protein L6

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 16

Owlery

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