RRM domain-containing protein

Overview
NameRRM domain-containing protein
Smed IDSMED30010921
Length (bp)2166
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RRM domain-containing protein (SMED30010921) t-SNE clustered cells

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30010921) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RRM domain-containing protein (SMED30010921) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RRM domain-containing protein (SMED30010921) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010921

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30010921SMESG000001498.1 SmedASXL_010372SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30010921SMESG000001498.1 SmedASXL_010372SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Human
Match: CCDC134 (coiled-coil domain containing 134 [Source:HGNC Symbol;Acc:HGNC:26185])

HSP 1 Score: 56.9954 bits (136), Expect = 2.015e-8
Identity = 26/80 (32.50%), Postives = 46/80 (57.50%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            A+   +EN+AF  D+ LRFP +V  +    S+   +I+W I+F  ++ +     H  +  L +QE GI EK+ ++ NP++
Sbjct:  104 AFSHVVENTAFFGDVVLRFPRIVHYYFDHNSNWNLLIRWGISFCNQTGVFNQGPHSPILSLMAQELGISEKDSNFQNPFK 183
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: CCDC134 (si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-218])

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-12
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            AY   +EN+AF  D+ALRFP +V  +  + +D   +++W ++F   + +     H+ +  L SQE GI EK  D++NPYR
Sbjct:  101 AYSHVVENTAFFGDVALRFPRIVHHYYERNADWSVLLRWGLSFCNHTGVFSGGAHQHVLTLMSQELGITEKSADFVNPYR 180
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: si:dkey-167k11.5 (si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-218])

HSP 1 Score: 68.9366 bits (167), Expect = 1.071e-12
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            AY   +EN+AF  D+ALRFP +V  +  + +D   +++W ++F   + +     H+ +  L SQE GI EK  D++NPYR
Sbjct:  101 AYSHVVENTAFFGDVALRFPRIVHHYYERNADWSVLLRWGLSFCNHTGVFSGGAHQHVLTLMSQELGITEKSADFVNPYR 180
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Match: si:dkey-167k11.5 (si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-218])

HSP 1 Score: 68.9366 bits (167), Expect = 1.089e-12
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            AY   +EN+AF  D+ALRFP +V  +  + +D   +++W ++F   + +     H+ +  L SQE GI EK  D++NPYR
Sbjct:  101 AYSHVVENTAFFGDVALRFPRIVHHYYERNADWSVLLRWGLSFCNHTGVFSGGAHQHVLTLMSQELGITEKSADFVNPYR 180
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: ccdc134 (coiled-coil domain containing 134 [Source:NCBI gene;Acc:548843])

HSP 1 Score: 69.3218 bits (168), Expect = 1.447e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREH-RLFHLASQEFGIIEKEQDYINPYR-ENLE 2051
            AY  ++ENSAF  D+ LRFP +V  +  + S+   +I+W I F   S I  +  H +L  L SQE GI EK  DY NP++ +N+E
Sbjct:  104 AYSHTVENSAFFGDVVLRFPKIVHHYFDRNSNWNNLIRWGIGFCNLSGIFDDGPHTQLLGLMSQELGISEKSPDYKNPFKMDNME 188
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Match: ccdc134 (coiled-coil domain containing 134 [Source:NCBI gene;Acc:548843])

HSP 1 Score: 69.3218 bits (168), Expect = 1.581e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREH-RLFHLASQEFGIIEKEQDYINPYR-ENLE 2051
            AY  ++ENSAF  D+ LRFP +V  +  + S+   +I+W I F   S I  +  H +L  L SQE GI EK  DY NP++ +N+E
Sbjct:  110 AYSHTVENSAFFGDVVLRFPKIVHHYFDRNSNWNNLIRWGIGFCNLSGIFDDGPHTQLLGLMSQELGISEKSPDYKNPFKMDNME 194
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Mouse
Match: Ccdc134 (coiled-coil domain containing 134 [Source:MGI Symbol;Acc:MGI:1923707])

HSP 1 Score: 60.077 bits (144), Expect = 1.449e-9
Identity = 27/82 (32.93%), Postives = 47/82 (57.32%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYREN 2045
            A+   +EN+AF  D+ LRFP +V  +    S+   +I+W I+F  ++ +     H  +  L +QE GI EK+ D+ NP++ +
Sbjct:  104 AFSHVVENTAFFGDVVLRFPKIVHHYFDHNSNWNLLIRWGISFCNQTGVFDQGPHSPILSLMAQELGITEKDSDFRNPFKTD 185
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q28F39|CC134_XENTR (Coiled-coil domain-containing protein 134 OS=Xenopus tropicalis OX=8364 GN=ccdc134 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.663e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREH-RLFHLASQEFGIIEKEQDYINPYR-ENLE 2051
            AY  ++ENSAF  D+ LRFP +V  +  + S+   +I+W I F   S I  +  H +L  L SQE GI EK  DY NP++ +N+E
Sbjct:  104 AYSHTVENSAFFGDVVLRFPKIVHHYFDRNSNWNNLIRWGIGFCNLSGIFDDGPHTQLLGLMSQELGISEKSPDYKNPFKMDNME 188
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8C7V8|CC134_MOUSE (Coiled-coil domain-containing protein 134 OS=Mus musculus OX=10090 GN=Ccdc134 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.014e-8
Identity = 27/82 (32.93%), Postives = 47/82 (57.32%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYREN 2045
            A+   +EN+AF  D+ LRFP +V  +    S+   +I+W I+F  ++ +     H  +  L +QE GI EK+ D+ NP++ +
Sbjct:  104 AFSHVVENTAFFGDVVLRFPKIVHHYFDHNSNWNLLIRWGISFCNQTGVFDQGPHSPILSLMAQELGITEKDSDFRNPFKTD 185
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5M862|CC134_RAT (Coiled-coil domain-containing protein 134 OS=Rattus norvegicus OX=10116 GN=Ccdc134 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.856e-8
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPY 2036
            A+   +EN+AF  D+ LRFP +V  +    S+   +I+W I+F  ++ +     H  +  L +QE GI EK+ D+ NP+
Sbjct:  104 AFSHVVENTAFFGDVVLRFPKIVHHYFDHNSNWNLLIRWGISFCNQTGVFDQGPHSPVLSLMAQELGITEKDSDFQNPF 182
[Close]
BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q9H6E4|CC134_HUMAN (Coiled-coil domain-containing protein 134 OS=Homo sapiens OX=9606 GN=CCDC134 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 9.678e-8
Identity = 26/80 (32.50%), Postives = 46/80 (57.50%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            A+   +EN+AF  D+ LRFP +V  +    S+   +I+W I+F  ++ +     H  +  L +QE GI EK+ ++ NP++
Sbjct:  104 AFSHVVENTAFFGDVVLRFPRIVHYYFDHNSNWNLLIRWGISFCNQTGVFNQGPHSPILSLMAQELGISEKDSNFQNPFK 183
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: G3NWA7 (Si:ch1073-322p19.1 OS=Gasterosteus aculeatus OX=69293 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.295e-10
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            AY   +EN+AF  D+ALRFP +V  +  + SD   +++W + F  R+ +     H+ +  L SQE GI EK  D+INPYR
Sbjct:  103 AYSHVVENTAFFGDVALRFPRIVHHYYDRNSDWDGLLRWGLNFCNRTGVFTGGAHQHVLTLMSQELGITEKSPDFINPYR 182
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A1L8GH31 (Uncharacterized protein OS=Xenopus laevis OX=8355 GN=ccdc134 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.164e-10
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREH-RLFHLASQEFGIIEKEQDYINPYR-ENLE 2051
            AY  ++ENSAF  D+ LRFP +V  +  + S+   +I+W I F   S IL +  H +L  L SQE GI EK  DY NP++ EN+E
Sbjct:  104 AYSHTVENSAFFGDVVLRFPKIVHHYFDRNSNWNNLIRWGIGFCNLSGILDDGPHTQLLGLMSQELGISEKSPDYKNPFKAENME 188
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: Q6PH93 (LOC398726 protein (Fragment) OS=Xenopus laevis OX=8355 GN=LOC398726 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.970e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREH-RLFHLASQEFGIIEKEQDYINPYR-ENLE 2051
            AY  ++ENSAF  D+ LRFP +V  +  + S+   +I+W I F   S I  +  H +L  L SQE GI EK  DY NP++ EN+E
Sbjct:  104 AYSHTVENSAFFGDVVLRFPKIVHHYFDRNSNWNSLIRWGIGFCNLSGIFNDGPHTQLLGLMSQELGISEKSPDYKNPFKTENME 188
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A4Z2GY14 (Coiled-coil domain-containing protein 134 OS=Liparis tanakae OX=230148 GN=ccdc134 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.039e-10
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            AY   +EN+AF  D+ALRFP +V  +  + +D   +++W + F  ++ +     H+ +  L SQE GI+EK  D+INPYR
Sbjct:  101 AYSHVVENTAFFGDVALRFPRIVHHYYDRNTDWDGLLRWGLNFCNQTGVFTGGAHQHVLTLMSQELGIMEKSSDFINPYR 180
[Close]
BLAST of RRM domain-containing protein vs. TrEMBL
Match: A0A1L8GNP2 (Uncharacterized protein OS=Xenopus laevis OX=8355 GN=ccdc134 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.361e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREH-RLFHLASQEFGIIEKEQDYINPYR-ENLE 2051
            AY  ++ENSAF  D+ LRFP +V  +  + S+   +I+W I F   S I  +  H +L  L SQE GI EK  DY NP++ EN+E
Sbjct:  104 AYSHTVENSAFFGDVVLRFPKIVHHYFDRNSNWNSLIRWGIGFCNLSGIFNDGPHTQLLGLMSQELGISEKSPDYKNPFKTENME 188
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Match: si:dkey-167k11.5 (si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-218])

HSP 1 Score: 65.4698 bits (158), Expect = 1.468e-11
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYRENLEKKLSQ 2066
            AY   +EN+AF  D+ALRFP +V  +  +  +   +++W + F   + +     H+ +  L SQE GIIEK  D+INPYR   +   +Q
Sbjct:  106 AYSHVVENTAFFGDVALRFPRIVHHYYDRNVEWGGLLRWGLRFCNLTGVFTEGPHQHVLTLMSQELGIIEKSPDFINPYRTERDDVSTQ 194
[Close]
BLAST of RRM domain-containing protein vs. Ensembl Medaka
Match: si:dkey-167k11.5 (coiled-coil domain containing 134 [Source:NCBI gene;Acc:101155355])

HSP 1 Score: 68.5514 bits (166), Expect = 1.294e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHR-LFHLASQEFGIIEKEQDYINPYR 2039
            AY   +EN+AF  D+ALRFP +V  +  + +D   +++W + F  ++ +     H+ +  L SQE GI EK  D+INPYR
Sbjct:  104 AYSHIVENTAFFGDVALRFPRIVHHYYDRNADWGGLLRWGLNFCNQTGVFTGGAHQHVLTLMSQELGITEKAPDFINPYR 183
[Close]
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000001498.1 (SMESG000001498.1)

HSP 1 Score: 214.927 bits (546), Expect = 3.080e-66
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 3 
Query: 1773 MGNLKIFLFLAYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINPYRENLEKKLSQENIXXXXXXXXXXXXSPRMSKIDL 2138
            MGNLKIFLFLAYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINP+RENLEKKLSQENIKVHKKAKKKLPKSPRMSKIDL
Sbjct:    1 MGNLKIFLFLAYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINPHRENLEKKLSQENIKVHKKAKKKLPKSPRMSKIDL 122
[Close]
BLAST of RRM domain-containing protein vs. Planmine SMEST
Match: SMESG000001498.1 (SMESG000001498.1)

HSP 1 Score: 196.823 bits (499), Expect = 3.348e-58
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 3 
Query: 1803 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINPYRENLEKKLSQENIXXXXXXXXXXXXSPRMSKIDL 2138
            AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINP+RENLEKKLSQENIKVHKKAKKKLPKSPRMSKIDL
Sbjct:  101 AYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWSITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINPHRENLEKKLSQENIKVHKKAKKKLPKSPRMSKIDL 212

HSP 2 Score: 152.91 bits (385), Expect = 3.471e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:   52 GIFYLINLFDFAAQDDNSTDRRVYETKRVMHKQAIDSILKYESRIKQYDLVTXXXXXXXXXXXXNRDILVKNAILAGDYIPDNKELREG 318
            GIFYLINLFDFAAQDDNSTDRRVYETKRVMHKQAIDSILKYESRIKQYDLVTIMIKKIIQILKINRDILVKNAILAGDYIPDNKELRE 
Sbjct:   13 GIFYLINLFDFAAQDDNSTDRRVYETKRVMHKQAIDSILKYESRIKQYDLVTIMIKKIIQILKINRDILVKNAILAGDYIPDNKELREA 101
The following BLAST results are available for this feature:
BLAST of RRM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CCDC1342.015e-832.50coiled-coil domain containing 134 [Source:HGNC Sym... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CCDC1341.071e-1237.50si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-... [more]
si:dkey-167k11.51.071e-1237.50si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-... [more]
si:dkey-167k11.51.089e-1237.50si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
ccdc1341.447e-1242.35coiled-coil domain containing 134 [Source:NCBI gen... [more]
ccdc1341.581e-1242.35coiled-coil domain containing 134 [Source:NCBI gen... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Ccdc1341.449e-932.93coiled-coil domain containing 134 [Source:MGI Symb... [more]
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BLAST of RRM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 4
Match NameE-valueIdentityDescription
sp|Q28F39|CC134_XENTR7.663e-1242.35Coiled-coil domain-containing protein 134 OS=Xenop... [more]
sp|Q8C7V8|CC134_MOUSE1.014e-832.93Coiled-coil domain-containing protein 134 OS=Mus m... [more]
sp|Q5M862|CC134_RAT2.856e-834.18Coiled-coil domain-containing protein 134 OS=Rattu... [more]
sp|Q9H6E4|CC134_HUMAN9.678e-832.50Coiled-coil domain-containing protein 134 OS=Homo ... [more]
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BLAST of RRM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G3NWA72.295e-1041.25Si:ch1073-322p19.1 OS=Gasterosteus aculeatus OX=69... [more]
A0A1L8GH313.164e-1044.71Uncharacterized protein OS=Xenopus laevis OX=8355 ... [more]
Q6PH934.970e-1043.53LOC398726 protein (Fragment) OS=Xenopus laevis OX=... [more]
A0A4Z2GY146.039e-1038.75Coiled-coil domain-containing protein 134 OS=Lipar... [more]
A0A1L8GNP28.361e-1043.53Uncharacterized protein OS=Xenopus laevis OX=8355 ... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:dkey-167k11.51.468e-1135.96si:dkey-167k11.5 [Source:ZFIN;Acc:ZDB-GENE-091204-... [more]
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BLAST of RRM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RRM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
si:dkey-167k11.51.294e-1238.75coiled-coil domain containing 134 [Source:NCBI gen... [more]
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BLAST of RRM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000001498.13.080e-6699.18SMESG000001498.1[more]
SMESG000001498.13.348e-5899.11SMESG000001498.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010921 ID=SMED30010921|Name=RRM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2166bp
ATTAGTCATTCCAAAATGAAAATTTTAAACTTATTAAATCTTCATATTTT
AGGTATTTTTTATTTAATTAATTTGTTTGATTTCGCAGCTCAAGATGATA
ATTCAACAGATAGGAGAGTGTATGAAACTAAGCGCGTTATGCACAAACAA
GCCATTGATTCTATTTTAAAATACGAATCTAGAATTAAGCAATATGATTT
AGTTACAATAATGATTAAAAAAATAATACAAATTCTAAAGATCAATCGAG
ATATTCTTGTGAAAAATGCCATTCTTGCAGGTGATTATATTCCAGATAAT
AAAGAACTTCGTGAAGGTAACTATTGATATATATGTGTGTGTATCCTAAA
AAATTTAATCAATTTTCTAAAAATTTTCTCATTGATAGATCCTCCCACTT
AAATCGGATAATTTGTGATTTCCATATAAAATTGGTTTTCTATCTCATAA
GTACATCTGTCGCTATCATAATTTCTTAATAAAATCATAAGAAATATTAT
CATTGAAATCCGCAAAAACCATTTTCAACTTTCGGTGATTGATAAATGAC
ATACTTTTCTTTGGATATACCTTCCAAACTCGAGATTCTAATCTTTCAAT
CCTACCGTCTCAACGATATAAATCCGTGCCATAAATCAATAACATTATTT
TCTAAAGTCAAAAAATGTTTGTAAAGCAACTTTTGGAAGTATTTATTAAG
GACGTCCCAATGGTATAGGAAAGGGGCAGACCTTTATTAGTAAAACAAAT
ACAGAGATATCAGACATGTGACATCCTTTTCCGGAATGCGGTTGTAAGAA
GCCAGTAGGTCTTTCTGGATCCTTTGATGACACACTCAACTAATTATGCT
ATCTTGTCTTTATAGTCTTCTTATTATTTGATCTTGGGGAGTTGTTTATT
TTGTCTTATGTTCCGAGAGAGAACACCATAAAGATTGTATAAATGCGTCC
TTCGTACTAGTGATTATGGCTGGTTAGAGATTCTATTGATTCCACTGGTC
TTGTTTCGGTCTCAACGTTGAGTTCTTTCATTTTTAGAGTTCCACCAATG
CTTAGTGTCGCAAAATTTAATAAAATCTTCTCAATGTTTAGTTTTAATGT
CTCAATTCAGTTTTTACTGAATTTGAAGGCTGAATATTAACTCAAAGCCA
AATTTATTTTATTCTATAAATTTAAAAGACCTGCAAATATTGGAGTTAAT
AAAATGAGTTGTTTTCTGTTTTAATGAAGGGGTAACCGATAGGACAAAGG
GTGCGTTTGAATAAAAACCTTTGTAGAAATGTTCAAAAGTTCATGAGCTA
TTATTTTTTCCAGTAATTTCCTAATACCCAATCTAATAGATTTGCGGCTT
TTATTGGTCGGTTTTGGTAGTCCTTATATTATGATGAAAATTTTGAATAT
TTAGTTATACAGGGATATAACTGAAAAATAGATGCATTTTGCATGATATT
ATTGATTTCTCAAATCTGGTAGTAAGTGGATGCGAGCCCAACCGACCACT
ATGAGTTATCGCGCACATATACCCTCGTAAATATGACTTAGTTTTCGATT
TCATAAATGGAGTTTCCGCACGGTTAGATGACAAGTTATCGGGTATTATA
TTTTGTATGTGTTATTATTGATTTTTGAGTGCAATTAATATGGAAACAGA
CCACATTTTGTCGAGACACATCCCACAATAAAACGATATGTATTCCTTTT
TCACGAAAAATAAGATTATATACAAAAATCAAGAAAAAGAAATTTTTGTT
TATAATAAATCTTTTGGGAACCATGGGAAATCTGAAAATATTTCTTTTTC
TAGCGTATTTGCTAAGTCTGGAAAATAGTGCATTTATCAGTGATCTTGCT
CTTCGCTTTCCTGATCTCGTTCAGTTATTTCTATCAAAAACCTCTGATGC
ATTGCCAGTAATCAAATGGTCGATAACATTCGCCACTCGCTCTTCAATCC
TTCCTAATAGGGAACATAGATTATTTCATCTAGCTTCACAGGAATTTGGA
ATCATTGAAAAGGAGCAGGATTACATTAATCCTTATAGAGAAAATTTAGA
AAAGAAACTTTCTCAAGAAAATATTAAAGTTCACAAGAAAGCCAAAAAGA
AATTGCCCAAAAGTCCCAGAATGTCCAAAATCGATTTATGATGTTTTCTC
GTTATTTATAATTTTA
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protein sequence of SMED30010921-orf-1

>SMED30010921-orf-1 ID=SMED30010921-orf-1|Name=SMED30010921-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=109bp
ISHSKMKILNLLNLHILGIFYLINLFDFAAQDDNSTDRRVYETKRVMHKQ
AIDSILKYESRIKQYDLVTIMIKKIIQILKINRDILVKNAILAGDYIPDN
KELREGNY*
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protein sequence of SMED30010921-orf-2

>SMED30010921-orf-2 ID=SMED30010921-orf-2|Name=SMED30010921-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=123bp
MGNLKIFLFLAYLLSLENSAFISDLALRFPDLVQLFLSKTSDALPVIKWS
ITFATRSSILPNREHRLFHLASQEFGIIEKEQDYINPYRENLEKKLSQEN
IKVHKKAKKKLPKSPRMSKIDL*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR026321Coiled-coil_dom_con_pro_134
Vocabulary: cellular component
TermDefinition
GO:0005576extracellular region
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..122
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.67
IPR026321Coiled-coil domain-containing protein 134PFAMPF15002ERK-JNK_inhibcoord: 12..118
e-value: 1.3E-26
score: 93.5
IPR026321Coiled-coil domain-containing protein 134PANTHERPTHR14735UNCHARACTERIZEDcoord: 14..119