Tigger transposable element-derived protein 6

Overview
NameTigger transposable element-derived protein 6
Smed IDSMED30010907
Length (bp)3207
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Tigger transposable element-derived protein 6 (SMED30010907) t-SNE clustered cells

Violin plots show distribution of expression levels for Tigger transposable element-derived protein 6 (SMED30010907) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010907

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30010907SMESG000056864.1 dd_Smed_v4_6187_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Xenopus
Match: RBSN (rabenosyn, RAB effector [Source:NCBI gene;Acc:100496168])

HSP 1 Score: 38.5058 bits (88), Expect = 5.400e-6
Identity = 28/96 (29.17%), Postives = 42/96 (43.75%), Query Frame = -2 
Query:  111 IEKYLVKSNNDDSGWAPTIPSNCGYHNEGH--NRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYD 392
            + K ++ +     GW PT          GH  NR  ++P                  L  Q+EN+  YI  A  A +V EV+ML++N+  L+ EYD
Sbjct:  425 LTKVVIHAIRKVEGWLPT---------SGHPRNREMSDP------------------LLQQIENITSYIRQAKDAGRVDEVQMLEDNLRQLQEEYD 493

HSP 2 Score: 33.4982 bits (75), Expect = 5.400e-6
Identity = 24/88 (27.27%), Postives = 40/88 (45.45%), Query Frame = -1 
Query:  448 SFSLGETEYSYQRANELRSEIVQFCQKIDAIGNKFKS---RTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQR 702
            S + GET Y+    N LR E+ ++ + IDA+  K  +           +   L K +  +  LF+Q     L  LP ++  EE+  +R
Sbjct:  303 SINAGETTYNLDHTNNLRVELQKYYELIDALSKKILTLGMNEEPKPHPKTQQLQKMVRYSATLFVQEKLLGLMSLPTKEIYEELKQKR 390
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Xenopus
Match: RBSN (rabenosyn, RAB effector [Source:NCBI gene;Acc:100496168])

HSP 1 Score: 38.1206 bits (87), Expect = 8.575e-6
Identity = 27/83 (32.53%), Postives = 37/83 (44.58%), Query Frame = -2 
Query:  111 GWAPTIPSNCGYHNEGH--NRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYD 353
            GW PT          GH  NR  ++P                  L  Q+EN+  YI  A  A +V EV+ML++N+  L+ EYD
Sbjct:  436 GWLPT---------SGHPRNREMSDP------------------LLQQIENITSYIRQAKDAGRVDEVQMLEDNLRQLQEEYD 491

HSP 2 Score: 33.113 bits (74), Expect = 8.575e-6
Identity = 26/95 (27.37%), Postives = 44/95 (46.32%), Query Frame = -1 
Query:  427 SFSLGETEYSYQRANELRSEIVQFCQKIDAIGNKFKS---RTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKK 702
            S + GET Y+    N LR E+ ++ + IDA+  K  +           +   L K +  +  LF+Q     L  LP ++  EE+  +R  E ++K
Sbjct:  303 SINAGETTYNLDHTNNLRVELQKYYELIDALSKKILTLGMNEEPKPHPKTQQLQKMVRYSATLFVQEKLLGLMSLPTKEIYEELKQKRRQENEQK 397
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. TrEMBL
Match: A0A2L2YFM5 (HTH CENPB-type domain-containing protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.483e-11
Identity = 58/214 (27.10%), Postives = 93/214 (43.46%), Query Frame = 1 
Query: 1984 CKNAKQKTAVLCCNVSGSIKLPITAIGK-------RQIRS-PISRHG*KLSFS--------IHSYSISVKGCILSLVKNMSTEFSIIQHPIKLNKPTNVGLTYLPPNVTSSMQLLDAGFIYTFKSYYCQ--LSRLGAAFIDLGKTWRNMRQLTAR----QSVELMVKGWEIVSTKTIADCAAHIGLLEKEDSALMDDVNTENSTVL---IDMNS 2550
            CK +K++  VLCC      K  +  IGK       + +++ P+     K ++         +  +   +K  IL L+ N +       H + ++    + + +LPPN TS +Q  D G I T K+YY +   SR+     D      N   L  +     ++ L+   W  VS KTI +C +H G  + ED+   D V  E   VL    DMN+
Sbjct:  194 CKTSKERLTVLCCASMTGTKEKLLVIGKSKKPRCFKGVKNLPVDYFANKTTWMTTTIFNEWLLKWDKRLKRNILLLIDNCTA------HDVTVS-LKKINIVFLPPNTTSLIQPCDQGIIRTLKAYYRKEMRSRILENMEDQDAEDLNANALAKKTNVLDAIHLLTMSWNNVSEKTIRNCFSHGGFCQPEDNN--DAVMKEMEDVLHPPPDMNA 398

HSP 2 Score: 42.3578 bits (98), Expect = 5.483e-11
Identity = 17/53 (32.08%), Postives = 32/53 (60.38%), Query Frame = 2 
Query: 1724 RENIKSRYLDGEGQINDTASAEEWLEKVWPTIRGKFPMDRIFNMDETVIYLKA 1882
            R+NI  R   GE +  D  +A++W+++ WP +   +  + ++N DET +Y +A
Sbjct:  126 RQNILFRRTHGEQKDADNVAADQWIKEEWPKLIAVYSHEDVYNADETGLYFRA 178
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. TrEMBL
Match: A0A2L2YFN1 (HTH CENPB-type domain-containing protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.619e-11
Identity = 58/214 (27.10%), Postives = 93/214 (43.46%), Query Frame = 1 
Query: 1984 CKNAKQKTAVLCCNVSGSIKLPITAIGK-------RQIRS-PISRHG*KLSFS--------IHSYSISVKGCILSLVKNMSTEFSIIQHPIKLNKPTNVGLTYLPPNVTSSMQLLDAGFIYTFKSYYCQ--LSRLGAAFIDLGKTWRNMRQLTAR----QSVELMVKGWEIVSTKTIADCAAHIGLLEKEDSALMDDVNTENSTVL---IDMNS 2550
            CK +K++  VLCC      K  +  IGK       + +++ P+     K ++         +  +   +K  IL L+ N +       H + ++    + + +LPPN TS +Q  D G I T K+YY +   SR+     D      N   L  +     ++ L+   W  VS KTI +C +H G  + ED+   D V  E   VL    DMN+
Sbjct:  194 CKTSKERLTVLCCASMTGTKEKLLVIGKSKKPRCFKGVKNLPVDYFANKTAWMTTTIFNEWLLKWDKRLKRNILLLIDNCTA------HDVTVS-LKKINIVFLPPNTTSLIQPCDQGIIRTLKAYYRKEMRSRILENMEDQDAEDLNANALAKKTNVLDAIHLLTMSWNNVSEKTIRNCFSHGGFCQPEDNN--DAVMKEMEDVLHPPPDMNA 398

HSP 2 Score: 42.3578 bits (98), Expect = 5.619e-11
Identity = 17/53 (32.08%), Postives = 32/53 (60.38%), Query Frame = 2 
Query: 1724 RENIKSRYLDGEGQINDTASAEEWLEKVWPTIRGKFPMDRIFNMDETVIYLKA 1882
            R+NI  R   GE +  D  +A++W+++ WP +   +  + ++N DET +Y +A
Sbjct:  126 RQNILFRRTHGEQKDADNVAADQWIKEEWPKLIAVYSHEDVYNADETGLYFRA 178
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. TrEMBL
Match: A0A2J7PTM7 (DDE-1 domain-containing protein OS=Cryptotermes secundus OX=105785 GN=B7P43_G16061 PE=4 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.378e-9
Identity = 43/172 (25.00%), Postives = 75/172 (43.60%), Query Frame = 1 
Query: 2005 TAVLCCNVSGSIKLPITAIGK-RQIRSPISRHG*KLSFSIHSYSISVKGCILSLVKNMSTEFSIIQ------------HPIKLNKPTNVGLTYLPPNVTSSMQLLDAGFIYTFKSYYCQLSRLG-AAFIDLGKTWRNMRQLTARQSVELMVKGWEIVSTKTIADCAAHIGLL 2478
            TA++C N +GS K  +  IGK +  R   +     + +S +  S        + +++   E    +            HP+ L     + L ++P N TS +Q +D G I   K +Y +L  L     I+  + +     +T   ++  + K W  V+TKTI +C  H G+L
Sbjct:  352 TALVCANATGSEKRKLLVIGKSKNPRCFKNVENLPVRYSANKKSWMTSSLFEAELRSWDRELQTRKRKIILLVDNCPAHPV-LQNLEKIKLVFIPANTTSVLQPMDQGVIRNLKCHYRKLILLRIVESIEKKQDY----TVTLLDAIRFIEKAWRRVTTKTIQNCFRHAGIL 518

HSP 2 Score: 43.8986 bits (102), Expect = 1.378e-9
Identity = 23/70 (32.86%), Postives = 35/70 (50.00%), Query Frame = 2 
Query: 1685 LFQQIVFVSRVLNRENIKSRYLDGEGQINDTASAEEWLEKVWPTIRGKFPMDRIFNMDETVIYLKAQQSR 1894
            +F +IV +     R NI    + GE +  +T +  EWL  VWP+I   +    +FN DET I+ +    R
Sbjct:  263 VFGKIVDMGVFKLRHNITFGKVSGEARGVNTETTTEWLTAVWPSIHKGYADKDVFNADETGIFFRLTPDR 332
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. TrEMBL
Match: A0A2H5RME8 (CENP-b protein 1 OS=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) OX=747089 GN=RIR_0687800 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.689e-9
Identity = 55/209 (26.32%), Postives = 98/209 (46.89%), Query Frame = 1 
Query: 1987 KNAKQKTAV-LCCNVSGSIKLPITAIGKRQIRSPISRHG*KLSFSIHSYSISVKGCILSLV-KNMSTEFSIIQHPIKLNKP-------------------TNVGLTYLPPNVTSSMQLLDAGFIYTFKSYYCQLS-RLGAAFIDLGKTWRNMRQLTARQSVELMVKGWEIVSTKTIADCAAHIGLLEKEDSALMDDVNTENSTVLIDMN 2547
            K +K++ +V LC N  GS KLP   IGK    +P       +     SY  + K  +L+ + +    EF   Q  IK +K                     NV + +LP N TS +Q +D+G I +FK +Y     R     ++ G+  +N++ +   Q+++ +++GW  V+  TI +C  H+ +L   D+   D+   ++S +  ++N
Sbjct:  195 KKSKERLSVALCANADGSHKLPPLIIGK--YANPRCFKNVNIGNLPMSYRNNAKAWMLATIFQEWLQEFDY-QVGIKHDKQRVLLLLDNCTSHKINNLVLENVEVYFLPSNTTSKLQPMDSGIIMSFKKHYRHHHIRWILEQVEAGQLIQNLK-MNVLQAIQYIIQGWNEVTADTIKNCWNHVKIL--SDAIPRDNDEDDDSNIDSELN 397

HSP 2 Score: 32.7278 bits (73), Expect = 2.689e-9
Identity = 20/62 (32.26%), Postives = 34/62 (54.84%), Query Frame = 2 
Query: 1724 RENIKSRYLDGEGQINDTASAEEWLEKVWPTIRGK---FPMDRIFNMDETVIYLKAQQSRCT 1900
            R  I+   L GE    D+A+ E  + +  P ++ K   +P DRI+NMDET  +++  ++  T
Sbjct:  131 RNGIRQVKLHGEA---DSAN-ENAIAEALPLLQSKCAEYPPDRIYNMDETGFFIEPDRTLAT 188
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. TrEMBL
Match: J9JTD9 (HTH CENPB-type domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2)

HSP 1 Score: 46.595 bits (109), Expect = 6.625e-9
Identity = 46/191 (24.08%), Postives = 83/191 (43.46%), Query Frame = 1 
Query: 1984 CKNAKQKTAVLCCNVSGSIKLPITAIGK----RQIRS----PISRHG*KLSFSIHSYSISVKGCILSLVKNMSTEFSII-----QHPIKLNKPTNVGLTYLPPNVTSSMQLLDAGFIYTFKSYYCQLSRLGAAFIDLGKTWRNMRQLTARQ---------SVELMVKGWEIVSTKTIADCAAHIGLLEKED 2490
            CK +K+   VLCC      K  +  IGK    R  +S    P+  +    + +    S+     ++   K ++ +  ++      H + ++   ++ +T LP N TS +Q  D G   T KSYY    ++    ID  +   + ++L+A +         ++ L+   W+ V+ KTI +C  H G  E  D
Sbjct:  217 CKKSKEHITVLCCASMSGKKQKLLVIGKNKNPRCFKSVKCLPVDYYA---NTNAWMTSVIFNEWLIKWDKQLNNKIVLLIDNCPAHVVNVS-LKHIRITLLPANTTSLIQPCDQGITKTLKSYY--RKQMWTRIIDNIENTNDQQKLSANELAKQTNLLDALHLITMAWDQVTDKTIRNCFKHGGFAESID 401

HSP 2 Score: 45.4394 bits (106), Expect = 6.625e-9
Identity = 21/53 (39.62%), Postives = 32/53 (60.38%), Query Frame = 2 
Query: 1724 RENIKSRYLDGEGQINDTASAEEWLEKVWPTIRGKFPMDRIFNMDETVIYLKA 1882
            RENI  +   GE +  D ++AE W++  WP I  ++  D +FN DET +Y +A
Sbjct:  149 RENIVYKRTYGEQKDADFSTAENWIKTEWPKIISEYTPDNVFNADETGLYYRA 201
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. Planmine SMEST
Match: SMESG000056864.1 (SMESG000056864.1)

HSP 1 Score: 244.202 bits (622), Expect = 5.956e-113
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = -2 
Query:   87 KLRKKAATMQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYDALRKKLKI 440
            +++KKAATMQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYDALRKKLKI
Sbjct:  430 EIKKKAATMQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYDALRKKLKI 547

HSP 2 Score: 185.267 bits (469), Expect = 5.956e-113
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = -1 
Query:  421 SFSLGETEYSYQRANELRSEIVQFCQKIDAIGNKFKSRTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKKSS 702
            S  LGETEYSYQRANELRSEIVQFCQKIDAIGNKFKSRTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKK++
Sbjct:  343 SLCLGETEYSYQRANELRSEIVQFCQKIDAIGNKFKSRTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKKAA 436
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. Planmine SMEST
Match: SMESG000056864.1 (SMESG000056864.1)

HSP 1 Score: 244.202 bits (622), Expect = 6.526e-113
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = -2 
Query:   87 KLRKKAATMQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYDALRKKLKI 440
            +++KKAATMQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYDALRKKLKI
Sbjct:  442 EIKKKAATMQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDSTDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLEYDALRKKLKI 559

HSP 2 Score: 184.882 bits (468), Expect = 6.526e-113
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = -1 
Query:  421 SFSLGETEYSYQRANELRSEIVQFCQKIDAIGNKFKSRTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKKSS 702
            S  LGETEYSYQRANELRSEIVQFCQKIDAIGNKFKSRTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKK++
Sbjct:  355 SLCLGETEYSYQRANELRSEIVQFCQKIDAIGNKFKSRTTTNGSEREATLVKSIYRNTFLFLQNNFATLKQLPQEDKLEEIVNQRLIEIKKKAA 448
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. Planmine SMEST
Match: SMESG000013528.1 (SMESG000013528.1)

HSP 1 Score: 114.775 bits (286), Expect = 6.058e-26
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1 
Query: 2335 GAAFIDLGKTWRN-MRQLTARQSVELMVKGWEIVSTKTIADCAAHIGLLEKEDSALMDDVNTENSTVLIDMNSL 2553
            GA+FIDLGK W   +RQLTA QSVELM+K WE+VSTK IA+C AHIGLLE EDS+LMDDVNTE+S +LIDMNS+
Sbjct:  537 GASFIDLGKIWEECVRQLTASQSVELMMKCWEMVSTKIIANCGAHIGLLETEDSSLMDDVNTESSIILIDMNSI 610
[Close]
BLAST of Tigger transposable element-derived protein 6 vs. Planmine SMEST
Match: SMESG000013528.1 (SMESG000013528.1)

HSP 1 Score: 114.775 bits (286), Expect = 6.422e-26
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1 
Query: 2335 GAAFIDLGKTWRN-MRQLTARQSVELMVKGWEIVSTKTIADCAAHIGLLEKEDSALMDDVNTENSTVLIDMNSL 2553
            GA+FIDLGK W   +RQLTA QSVELM+K WE+VSTK IA+C AHIGLLE EDS+LMDDVNTE+S +LIDMNS+
Sbjct:  538 GASFIDLGKIWEECVRQLTASQSVELMMKCWEMVSTKIIANCGAHIGLLETEDSSLMDDVNTESSIILIDMNSI 611
The following BLAST results are available for this feature:
BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
RBSN5.400e-629.17rabenosyn, RAB effector [Source:NCBI gene;Acc:1004... [more]
RBSN8.575e-632.53rabenosyn, RAB effector [Source:NCBI gene;Acc:1004... [more]
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2L2YFM55.483e-1127.10HTH CENPB-type domain-containing protein (Fragment... [more]
A0A2L2YFN15.619e-1127.10HTH CENPB-type domain-containing protein (Fragment... [more]
A0A2J7PTM71.378e-925.00DDE-1 domain-containing protein OS=Cryptotermes se... [more]
A0A2H5RME82.689e-926.32CENP-b protein 1 OS=Rhizophagus irregularis (strai... [more]
J9JTD96.625e-924.08HTH CENPB-type domain-containing protein OS=Acyrth... [more]
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Tigger transposable element-derived protein 6 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000056864.15.956e-11397.46SMESG000056864.1[more]
SMESG000056864.16.526e-11397.46SMESG000056864.1[more]
SMESG000013528.16.058e-2674.32SMESG000013528.1[more]
SMESG000013528.16.422e-2674.32SMESG000013528.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010907 ID=SMED30010907|Name=Tigger transposable element-derived protein 6|organism=Schmidtea mediterranea sexual|type=transcript|length=3207bp
TTTTTTTTTAATATTTTAACTTTATATTTCAAATAAAAATATAATACAAA
ATCTTAAAATAAATTAATCTCAAACACAGTGATTTAAATTTTCAACTTTT
TCCGCAACGCATCGTATTCTAATTTCAAATCTAGCATATTGTTCTGTAGC
ATCTTCACTTCTTGAACCTTTTTAGCTTGGTGGGCAAGTTCAATATATTG
CCGGACATTTTCCATTTGCAATGCCAGAGCAGTTAAGCGAGTATTTTCTT
CGGTATTCGAATCGGTACTGTCACATTCGAACGGATTATTAGTATTCCGG
TTGTGGCCCTCGTTATGATAACCACAGTTACTGGGGATGGTTGGAGCCCA
GCCTGAATCATCATTATTACTTTTCACTAAATACTTCTCAATTTCAGGAG
ATCGGTTTTTTTGCATTGTTGCTGCTTTTTTTCTTAATTTCTATTAATCG
TTGGTTTACTATTTCTTCTAATTTATCTTCTTGAGGTAGCTGTTTAAGAG
TAGCAAAATTATTTTGTAAAAACAAGAAAGTATTTCTATAAATTGATTTG
ACTAGAGTAGCTTCCCGTTCACTTCCGTTAGTGGTAGTTCTTGATTTAAA
TTTATTTCCTATGGCGTCTATTTTTTGGCAAAATTGAACTATTTCTGATC
GAAGTTCATTAGCTCTCTGATAACTGTATTCGGTTTCTCCTAAACTGAAC
GAAATAATTTACTTAGTCATAAAGATGTCAATTGTGATATTGTTATTATT
ATGATGATAAATTAATTTAGTTAGTTTTTTGTTAAATTTCCAAATGTTTA
GAAAAATAAATTATTAATCAAATATTTTGTATTACACCATCCGCCGCTTT
ATATGTCACCTCTTATTATTAACTTCCGTTTTTTGTATTTACCCTGATTT
TGTAATTTAACTGAGTCTCAGTCATTTTCAATAGTATCAATTTCCTTTAT
TACTGACTCGCTTAATAATGACTTTCGTCTTATATTAACATTATTTTTAG
GTGGTTTCAAATCGCTACATATAACTTTCGCTTATAAAATACCCCCACGC
GCAAGCTTATATAATTCACCATCTTAAGTCGCGCCACACGCTCACACCAC
CATAGAGATAAATACAGTACAGCACAGGAAGAAACAGGTGACAGTACAAT
CTCTTTCTATTGTGCATTTTATCACTTTACGTATTCACGTGCCCATCTGC
AATGCATCCTTCTTTTACTTTCTCAGTACATGAAAGAATTGACTTCTTCC
TCACACTTACCTATCACAGCCCGATAAGCGTGTATGTGCATGTTTAAGAG
TATTTACTGTCCTTTTCTCACCATTTTTATTGCAGTTTACATGTGCAATC
ATGAAGAGAATAAGGAGATAGTTGGATGTTACAAAGAAGATGGAGATTGA
TGAAATGGCATCGAAAACAACAATATAGGAAGTCATAAATAAATTTTGAG
TATCTAAACCAACAGTTATCTCTTGTAAAAAAACGAATTGGAGAACAAGG
CGGATATATTGAGCGGTAAAAATCCTAAAGTGAAGAGAAGAACTGAAAAG
GCACCCATAATAGATGCAGCCCTGATTGACTTCACTAAAAAAGGACGAAC
ATGCGATTTCTCTTTTCAAAGGAAGATGTTAATGGATAAAGCTTCAGATA
TTGCGATGGAAATGAGTAAAGATGTTGAGAAGTTTTGTTTCAACAGATAG
TTTTTGTTTCTAGAGTGCTAAATCGTGAAAATATCAAGTCTAGGTATTTG
GATGGGGAAGGTCAAATTAATGACACAGCGAGTGCAGAAGAATGGTTGGA
AAAGGTATGGCCGACAATTAGAGGAAAATTTCCAATGGATCGAATATTTA
ACATGGATGAGACTGTCATTTATTTGAAAGCGCAGCAATCACGATGCACC
TTTAATATTTTTAGTTTTCTTTAAAAACATTTTCTGCATCTGCTATTTGT
CTGTTCAGAGCATTTGTGCTTCCAGACGACTGTTGTAAAAATGCAAAGCA
AAAGACTGCAGTTTTGTGTTGTAATGTGAGTGGTTCAATAAAACTGCCCA
TCACTGCTATTGGAAAACGTCAAATACGTTCGCCAATAAGTCGGCATGGA
TGAAAACTGAGTTTTTCAATACATAGTTACAGTATTTCAGTAAAAGGATG
TATTCTTTCTTTGGTGAAGAATATGTCTACTGAATTCTCGATAATTCAAC
ATCCAATAAAGTTAAACAAGCCTACGAATGTTGGGTTAACTTATCTTCCA
CCAAATGTGACTTCTAGCATGCAATTACTTGATGCAGGGTTTATCTACAC
ATTTAAAAGTTATTATTGTCAACTTTCTCGGCTAGGTGCTGCTTTTATCG
ATCTTGGAAAAACTTGGAGAAATATGAGACAACTTACTGCTCGTCAATCA
GTGGAGTTGATGGTGAAAGGATGGGAAATTGTTTCTACAAAAACAATTGC
TGATTGTGCTGCTCATATTGGTTTACTTGAAAAAGAAGATAGTGCATTAA
TGGATGATGTAAACACTGAAAATTCCACCGTCCTCATTGACATGAACAGC
CTTTAGTAACACGATGAAGGAAATGAGTCAAATTATTTTAGTGCTGGTTA
TTGTAAATAGTGTACTCATGTGTAATGTACTTTATATCCATTAAGGCGGA
GGAAGATGAAGATGATGAATCTATAACGGTTCCAACCACGTCAGAAGCTT
TATGCAGTCTATAAAATGTACGTCTTTGGGCAGAGGCAAATGACTGTTGC
GTTACATATAGCATGGGTATTATTCGAACAGTGAAGGCACACAAGCAGAA
TGCATCAAAACAGTCTTTAATAACTGAATACTTTCTTCCAAAGCATTAAT
AACCATTCTCGCAAGTTTTAATTTATTTTGATACATTGTTTGTATGTCTA
TGTGCACATTATTACAACACCGCCATTTATTATTAACTTTCGCATATTAT
TTACCACCAAAATGTGAAATGGTAGGAGTTAATATAAAGCGGTGGACACT
GTATTTGTAATTGTGAATGGCCTTGTAATTTTCAACTTAATTCTCATTCA
GTAAAACAAACGCTTTGGTTCATGTTTTCTGATTTTTAATAATTTTTGGA
AAATGTTTATTTTATAGAATATTTAAATTGAGAATGTTAAATTTAAATAT
CACTGTATATAATGTCTAAATAATTTCAAAATCATTTATTATTTTGTTCA
CCTGTGA
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protein sequence of SMED30010907-orf-1

>SMED30010907-orf-1 ID=SMED30010907-orf-1|Name=SMED30010907-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=128bp
MSTEFSIIQHPIKLNKPTNVGLTYLPPNVTSSMQLLDAGFIYTFKSYYCQ
LSRLGAAFIDLGKTWRNMRQLTARQSVELMVKGWEIVSTKTIADCAAHIG
LLEKEDSALMDDVNTENSTVLIDMNSL*
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protein sequence of SMED30010907-orf-2

>SMED30010907-orf-2 ID=SMED30010907-orf-2|Name=SMED30010907-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=111bp
MQKNRSPEIEKYLVKSNNDDSGWAPTIPSNCGYHNEGHNRNTNNPFECDS
TDSNTEENTRLTALALQMENVRQYIELAHQAKKVQEVKMLQNNMLDLKLE
YDALRKKLKI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR036531Rbsn_Rab-bd_sf
IPR004875DDE_SF_endonuclease_dom
IPR021565Rbsn_Rab_binding_dom
Vocabulary: molecular function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..107
NoneNo IPR availableGENE3DG3DSA:4.10.860.20coord: 63..107
e-value: 1.6E-9
score: 39.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..55
IPR021565Rabenosyn, Rab binding domainPFAMPF11464Rbsncoord: 66..103
e-value: 2.5E-8
score: 33.5
IPR036531Rabenosyn, Rab binding domain superfamilySUPERFAMILYSSF140125Rabenosyn-5 Rab-binding domain-likecoord: 51..104