SMED30010654
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010654 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13
Alignments
SMED30010654 aligns in the following genomic locations:
Homology
BLAST of SMED30010654 vs. Ensembl Zebrafish
Match: FO834800.1 (E3 ubiquitin-protein ligase RNF31 [Source:NCBI gene;Acc:100334178]) HSP 1 Score: 50.8322 bits (120), Expect = 8.485e-6 Identity = 33/132 (25.00%), Postives = 49/132 (37.12%), Query Frame = 3 Query: 1332 WSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C+ C+ N C TC DR R + + + WQC C+ +N S++ CE C R P P +S D+ W C C+YVN ++VC++C Sbjct: 298 WQCSYCTTVNSMLQVLCETC---DRPRLSSAAPSLQEESSQPSTISEWQCKSCTVVNAGSSILCEVCERPRLATR------------------PPAVPPRATPSSSALMDSQWICQFCTYVNRTPSTVCDMC 408
BLAST of SMED30010654 vs. Ensembl Xenopus
Match: rnf31 (ring finger protein 31 [Source:NCBI gene;Acc:100036616]) HSP 1 Score: 56.225 bits (134), Expect = 2.426e-7 Identity = 44/162 (27.16%), Postives = 65/162 (40.12%), Query Frame = 3 Query: 1332 WSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETC-----------------GDTARNKRKANELQANKISEMKTLF----------EPGENAPVPNNASR---IDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C C F+NK + CV C +R RG + + L DSW+C C+ N SAV C C R+ ++ N+ +SE LF EP P+ ++ + I WQC+ C++ N ++ VCEIC Sbjct: 211 WRCYSCHFENKGGSVLCVVC---ERPRGCTSSLSNLSLGSTLQ-RDSWECQACTLQNSASAVLCAVCDRPRLASKPAQDGYDSVALLLRDIQRDNKSITCPVSEKNGLFAMKNHQESMHEPESIGPLIDHTRQEEEIAKSEGWQCSHCTFFNTRNGRVCEIC 368
BLAST of SMED30010654 vs. Ensembl Xenopus
Match: rnf31 (ring finger protein 31 [Source:NCBI gene;Acc:100036616]) HSP 1 Score: 56.225 bits (134), Expect = 2.534e-7 Identity = 44/162 (27.16%), Postives = 65/162 (40.12%), Query Frame = 3 Query: 1332 WSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETC-----------------GDTARNKRKANELQANKISEMKTLF----------EPGENAPVPNNASR---IDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C C F+NK + CV C +R RG + + L DSW+C C+ N SAV C C R+ ++ N+ +SE LF EP P+ ++ + I WQC+ C++ N ++ VCEIC Sbjct: 212 WRCYSCHFENKGGSVLCVVC---ERPRGCTSSLSNLSLGSTLQ-RDSWECQACTLQNSASAVLCAVCDRPRLASKPAQDGYDSVALLLRDIQRDNKSITCPVSEKNGLFAMKNHQESMHEPESIGPLIDHTRQEEEIAKSEGWQCSHCTFFNTRNGRVCEIC 369
BLAST of SMED30010654 vs. Ensembl Xenopus
Match: rnf31 (ring finger protein 31 [Source:NCBI gene;Acc:100036616]) HSP 1 Score: 56.225 bits (134), Expect = 2.655e-7 Identity = 44/162 (27.16%), Postives = 65/162 (40.12%), Query Frame = 3 Query: 1332 WSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETC-----------------GDTARNKRKANELQANKISEMKTLF----------EPGENAPVPNNASR---IDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C C F+NK + CV C +R RG + + L DSW+C C+ N SAV C C R+ ++ N+ +SE LF EP P+ ++ + I WQC+ C++ N ++ VCEIC Sbjct: 231 WRCYSCHFENKGGSVLCVVC---ERPRGCTSSLSNLSLGSTLQ-RDSWECQACTLQNSASAVLCAVCDRPRLASKPAQDGYDSVALLLRDIQRDNKSITCPVSEKNGLFAMKNHQESMHEPESIGPLIDHTRQEEEIAKSEGWQCSHCTFFNTRNGRVCEIC 388
BLAST of SMED30010654 vs. Ensembl Xenopus
Match: rnf31 (ring finger protein 31 [Source:NCBI gene;Acc:100036616]) HSP 1 Score: 56.225 bits (134), Expect = 2.660e-7 Identity = 44/162 (27.16%), Postives = 65/162 (40.12%), Query Frame = 3 Query: 1332 WSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETC-----------------GDTARNKRKANELQANKISEMKTLF----------EPGENAPVPNNASR---IDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C C F+NK + CV C +R RG + + L DSW+C C+ N SAV C C R+ ++ N+ +SE LF EP P+ ++ + I WQC+ C++ N ++ VCEIC Sbjct: 211 WRCYSCHFENKGGSVLCVVC---ERPRGCTSSLSNLSLGSTLQ-RDSWECQACTLQNSASAVLCAVCDRPRLASKPAQDGYDSVALLLRDIQRDNKSITCPVSEKNGLFAMKNHQESMHEPESIGPLIDHTRQEEEIAKSEGWQCSHCTFFNTRNGRVCEIC 368
BLAST of SMED30010654 vs. Ensembl Xenopus
Match: rnf31 (ring finger protein 31 [Source:NCBI gene;Acc:100036616]) HSP 1 Score: 56.225 bits (134), Expect = 2.692e-7 Identity = 44/162 (27.16%), Postives = 65/162 (40.12%), Query Frame = 3 Query: 1332 WSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETC-----------------GDTARNKRKANELQANKISEMKTLF----------EPGENAPVPNNASR---IDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C C F+NK + CV C +R RG + + L DSW+C C+ N SAV C C R+ ++ N+ +SE LF EP P+ ++ + I WQC+ C++ N ++ VCEIC Sbjct: 205 WRCYSCHFENKGGSVLCVVC---ERPRGCTSSLSNLSLGSTLQ-RDSWECQACTLQNSASAVLCAVCDRPRLASKPAQDGYDSVALLLRDIQRDNKSITCPVSEKNGLFAMKNHQESMHEPESIGPLIDHTRQEEEIAKSEGWQCSHCTFFNTRNGRVCEIC 362
BLAST of SMED30010654 vs. Ensembl Mouse
Match: Ranbp2 (RAN binding protein 2 [Source:MGI Symbol;Acc:MGI:894323]) HSP 1 Score: 52.373 bits (124), Expect = 4.088e-6 Identity = 80/344 (23.26%), Postives = 120/344 (34.88%), Query Frame = 3 Query: 1044 SNKTISAKTVI----ASNTNLSTLANTKSIVCDNK---WACSKCSYENETSDVKCVTCSHTDSNGGKETES---RSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGD-TARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKE-------AEGIPEETWRCNKCGNNNSFDVYKCQKCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRLIKCRKCRKGFVNAPNNQNNDICGA 2021 SNK + ++ A T L + + + NK W CS C NE + +C+ C +T S S LP+S S + ++G W C+ C +N++S CV C N GK+ K W C+ CS N+ A+ C C + + A SEM F G + W C+ C NE S + C C + P K+ + ET R K G F + + W C CS N+ S +C C+ P K + F +Q+N+ G+ Sbjct: 1376 SNKELLGPPLVENGFAPKTGLENAQDRFATMTANKEGHWDCSVCLVRNEPTVSRCIACQNTKSASSFVQTSFKFGQGDLPKSVD--------SDFRSVFSKKEGQ-WECSVCLVRNERSAKKCVAC----ENPGKQFKE--------------WHCSLCSVKNEAHAIKCVACNNPVTPSLSTAPPSFKFGTSEMSKPFRIG------FEGMFAKKEGQWDCSLCFVRNEASATHCIAC----QYPNKQNQPTSCVSAPASSETSRSPKSGFEGLFPKKEGE-----------WECAVCSVQNESSSLKCVACEASKPTH-KPHEAPSAFTVGSKSQSNESAGS 1670
BLAST of SMED30010654 vs. TrEMBL
Match: A0A1X7UH10 (Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.739e-10 Identity = 61/240 (25.42%), Postives = 102/240 (42.50%), Query Frame = 3 Query: 1137 WACSKCSYENETSDVKCVTC----SHTDSNGGKETESRSNKLPESQ---SITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGY---IDRNRGKENKSRSD----------------------KLLEMQN--FVDSWQCAKCSYINKTSAVTCETCGDTARNKRKA---------NELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C+ C+YEN+ C C S DS+ K + R+ K E + +TV +S + R++ ++WSC C++KN ++ C CG+ ID + K+++ +D KL E + V W C KC+++N + CE CG T R + E+ + ++ L EN+P+ N ++ + W C C+Y N K C +C Sbjct: 7 WTCTSCTYENQLKSQYCSMCNEERSFKDSDPMKRRQKRTKKEDEEEIGPEVTVMDRLSSFSRSLFRLK-SSHWSCPGCTYKNNEADTQCAVCGHDKPIDVKQSKDDRQSNDTNTGSITSSISNGISSGFKKLKKLFEPEPEVTVTGWTCRKCTFVNHPDLLECEQCGSTGRRHPLSLDHILPTDDGEVLFGDPAVLRELINKLENSPL--NEYSLEETDKWVCPACTYHN-KGGERCGVC 242
BLAST of SMED30010654 vs. TrEMBL
Match: A0A1A8H6N3 (RANBP2-like and GRIP domain containing 2 (Fragment) OS=Nothobranchius korthausae OX=1143690 GN=RGPD2 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 9.036e-10 Identity = 73/340 (21.47%), Postives = 109/340 (32.06%), Query Frame = 3 Query: 1128 DNKWACSKCSYENETSDVKCVTCSHTDSNGGKETESRSN----------------------------------KLPESQSI-TVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCG----------YIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDND--------NTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAE-----GIPEETWRCNKCGNNNSFDVYKCQKCREIAE-------FADK---WVCGQCSFYNDKLSPRCGVCDMDNP 1943 + W CS C N+ +DV+C+ C H + + E + + +P S + T + ++A+T + G+ W C +CS KN+ S C++C + + + + W C KCS N+ SA C +C A + L S M E + + D+ W C C NE S C C + NP + W CN C N +C CR E FA K W C C ND + +C C NP Sbjct: 1288 EGDWECSVCCVRNKPTDVRCLACQHANPQSSSKPEIQPSGETKGTQFTFKFGTDASNPSSSGSTFSGFGAFGASIPSSFTFGTNSSKSANTKPSAFTFGFGSQWDCKKCSTKNEASVESCISCKAPKIVAPTSVMVQTTPAVDADVKDSGFAQFSKESGQWDCNKCSSKNEVSAECCVSC--KAPKTAALHMLSHAITSAMAQTTPAAEAPAAQPSVAVSDSGFAQFSKKPGQWDCALCEVRNEASADKCAACQS--PNPAATSALGSDFAKKNGQWHCNACLVRNEASATECVSCRTPHENPSLATIFARKEGEWDCDTCLVRNDASTSKCQACQAPNP 1623
BLAST of SMED30010654 vs. TrEMBL
Match: A0A1A8ETE8 (RANBP2-like and GRIP domain containing 2 (Fragment) OS=Nothobranchius korthausae OX=1143690 GN=RGPD2 PE=4 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.294e-9 Identity = 73/340 (21.47%), Postives = 109/340 (32.06%), Query Frame = 3 Query: 1128 DNKWACSKCSYENETSDVKCVTCSHTDSNGGKETESRSN----------------------------------KLPESQSI-TVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCG----------YIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDND--------NTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAE-----GIPEETWRCNKCGNNNSFDVYKCQKCREIAE-------FADK---WVCGQCSFYNDKLSPRCGVCDMDNP 1943 + W CS C N+ +DV+C+ C H + + E + + +P S + T + ++A+T + G+ W C +CS KN+ S C++C + + + + W C KCS N+ SA C +C A + L S M E + + D+ W C C NE S C C + NP + W CN C N +C CR E FA K W C C ND + +C C NP Sbjct: 1173 EGDWECSVCCVRNKPTDVRCLACQHANPQSSSKPEIQPSGETKGTQFTFKFGTDASNPSSSGSTFSGFGAFGASIPSSFTFGTNSSKSANTKPSAFTFGFGSQWDCKKCSTKNEASVESCISCKAPKIVAPTSVMVQTTPAVDADVKDSGFAQFSKESGQWDCNKCSSKNEVSAECCVSC--KAPKTAALHMLSHAITSAMAQTTPAAEAPAAQPSVAVSDSGFAQFSKKPGQWDCALCEVRNEASADKCAACQS--PNPAATSALGSDFAKKNGQWHCNACLVRNEASATECVSCRTPHENPSLATIFARKEGEWDCDTCLVRNDASTSKCQACQAPNP 1508
BLAST of SMED30010654 vs. TrEMBL
Match: A0A1X7SKP5 (Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.604e-9 Identity = 60/240 (25.00%), Postives = 102/240 (42.50%), Query Frame = 3 Query: 1137 WACSKCSYENETSDVKCVTC----SHTDSNGGKETESRSNKLPESQ---SITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGY---IDRNRGKENKSRSD----------------KLLEMQNF--------VDSWQCAKCSYINKTSAVTCETCGDTARNKRKA---------NELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEIC 1727 W C+ C+YEN+ C C S DS+ K + R+ K E + +TV +S + R++ ++WSC +C++KN ++ C CG ID + K++K +D +++ F V W C KC+++N + CE CG T R + E+ + ++ L EN+P+ N ++ + W C C+Y N K C +C Sbjct: 7 WTCASCTYENQLKSQYCSMCNKERSIKDSDPMKRRQKRTKKEDEEEIGPEVTVMDRLSSFSRSLFRLK-SSHWSCPECTYKNNEADTQCGMCGQDKPIDIKQFKDDKQSNDTNTGSITSSISSGISSGFKKLKKFFEPDPEVAVTGWTCRKCTFVNHPDLLECEQCGSTQRRHPLSLDHILPTDDGEVLFGDPAVLRELINKLENSPL--NEYSLEETDRWVCPACTYHN-KGGERCGVC 242
BLAST of SMED30010654 vs. TrEMBL
Match: A0A0N0P2D5 (Uncharacterized protein OS=Leptomonas seymouri OX=5684 GN=ABL78_8162 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.268e-8 Identity = 66/275 (24.00%), Postives = 103/275 (37.45%), Query Frame = 3 Query: 1137 WACSKCSYENETSDVKCVTCSHTDSNGGKETESRSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDK------LLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCQKCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNP 1943 W C+ C++ N+ VKC C T G + S+ P + +AS L+ +R W C C N S C C Y R+ G ++ S ++ F W+C+ C +N S+ C+ C RN +E A S G + P+P W C+ C++ N S +VC C + G+ + + + K +N K + E A +W C C+F N RC +C P Sbjct: 206 WGCAVCTFRNKLGVVKCEMCGSTRP--GYTAPATSSPSPPVAATPSAQPSASALSPPSRA-GVTAWQCGMCLAPNDASAERCKVC-YAYRSSGTPVQTTSSAGGGGMGVVSNTPFTTRWKCSVCGEVNAPSSANCKICHGFQRNGTPVSEESAPNSSSNHG----GGDPPLP---------TAWACSVCTFENPTSAAVCTACES-----GQRPRHLAPKRDKEKKHASNKHHGGEKKKAEEEGA--VRQWPCPTCTFLNPVGRKRCDMCGAKRP 456
BLAST of SMED30010654 vs. Ensembl Medaka
Match: si:ch1073-55a19.2 (RANBP2-like and GRIP domain-containing protein 8 [Source:NCBI gene;Acc:101160447]) HSP 1 Score: 58.5362 bits (140), Expect = 3.664e-8 Identity = 94/452 (20.80%), Postives = 151/452 (33.41%), Query Frame = 3 Query: 741 YSTKKNISFEKPDKKKEKSQNLQTYN-FESKQTIEEIDWENMDKITKSNVKENKRNGKASKAYNIKYTGEMKRDQPSVKTTDYYSLNETTCEDQRA-DGFGNKSNKTISAKTVIASNTNLSTLANTKSIV---CDNK----WACSKCSYENETSDVKCVTCSHTDSNGGKETESRSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKEN--------------KSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEE------------------TWRCNKCGNNNSFDVYKCQKCRE----------IAEFADKWVCGQCSFYNDKLSPRCGVCDMDNP 1943 + K ++ P+K+ EK + + + ++ ++E DWE D N + R KA + N E++ + S T + + + GFG + S+ T ++ L A TK+I D+K W C KCS +NETS C++C + + K +S + + A L+ + G W C C +N+ + CV C + + + D + W C C N ++A C C A K+ A + T+ +P AP A W C C NE + C C + + KE P W C C N KC C + +W C C N+ + +C C NP Sbjct: 1297 FEEAKKVALASPEKQPEKKSSSKDSDSLAARFALKEGDWE-CDVCCVVNKPSDLR-CKACQTANPSSKAEVQAPKASAFTFKFGTDSSKQSSSGSTFAGFGGFGSSVPSSFTFGMGSSKLPDAA-TKAISFGSLDDKRSAQWNCEKCSTKNETSADVCLSCKTSKTATKKTVQSSPTAAVQPSAF------APDLSAQFGKKPGQ-WDCNVCEVRNESAAERCVACKTAAKKTVQSSPAAAVQPAAAVQPAAFAPDLRAQFGKKPGQWDCNVCEVRNDSAAERCVACKTAA--KKTVQSSPAAAVQPAATV-QPAAFAP-DLRAQFGKKPGQWDCNVCEVRNESAAERCVAC---NTSKAKETATAPVAPSLPPAPEITADSSKVGGQWDCKSCLVRNEASATKCVCCSAPNDTLSLEAIFGKNQGEWDCDACLVRNEASASKCVACQAANP 1731
BLAST of SMED30010654 vs. Ensembl Medaka
Match: si:ch1073-55a19.2 (RANBP2-like and GRIP domain-containing protein 8 [Source:NCBI gene;Acc:101160447]) HSP 1 Score: 58.5362 bits (140), Expect = 3.693e-8 Identity = 94/452 (20.80%), Postives = 151/452 (33.41%), Query Frame = 3 Query: 741 YSTKKNISFEKPDKKKEKSQNLQTYN-FESKQTIEEIDWENMDKITKSNVKENKRNGKASKAYNIKYTGEMKRDQPSVKTTDYYSLNETTCEDQRA-DGFGNKSNKTISAKTVIASNTNLSTLANTKSIV---CDNK----WACSKCSYENETSDVKCVTCSHTDSNGGKETESRSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKEN--------------KSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEE------------------TWRCNKCGNNNSFDVYKCQKCRE----------IAEFADKWVCGQCSFYNDKLSPRCGVCDMDNP 1943 + K ++ P+K+ EK + + + ++ ++E DWE D N + R KA + N E++ + S T + + + GFG + S+ T ++ L A TK+I D+K W C KCS +NETS C++C + + K +S + + A L+ + G W C C +N+ + CV C + + + D + W C C N ++A C C A K+ A + T+ +P AP A W C C NE + C C + + KE P W C C N KC C + +W C C N+ + +C C NP Sbjct: 1297 FEEAKKVALASPEKQPEKKSSSKDSDSLAARFALKEGDWE-CDVCCVVNKPSDLR-CKACQTANPSSKAEVQAPKASAFTFKFGTDSSKQSSSGSTFAGFGGFGSSVPSSFTFGMGSSKLPDAA-TKAISFGSLDDKRSAQWNCEKCSTKNETSADVCLSCKTSKTATKKTVQSSPTAAVQPSAF------APDLSAQFGKKPGQ-WDCNVCEVRNESAAERCVACKTAAKKTVQSSPAAAVQPAAAVQPAAFAPDLRAQFGKKPGQWDCNVCEVRNDSAAERCVACKTAA--KKTVQSSPAAAVQPAATV-QPAAFAP-DLRAQFGKKPGQWDCNVCEVRNESAAERCVAC---NTSKAKETATAPVAPSLPPAPEITADSSKVGGQWDCKSCLVRNEASATKCVCCSAPNDTLSLEAIFGKNQGEWDCDACLVRNEASASKCVACQAANP 1731
BLAST of SMED30010654 vs. Ensembl Medaka
Match: zranb1a (zinc finger RANBP2-type containing 1 [Source:NCBI gene;Acc:101175114]) HSP 1 Score: 50.447 bits (119), Expect = 8.997e-6 Identity = 52/205 (25.37%), Postives = 81/205 (39.51%), Query Frame = 3 Query: 1131 NKWACSKCSYENETSDVKCVTCSHTDSNGGKETESRSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVP-----NNASRID-NDNTWQCTQCSYVNEKSTSVCEIC 1727 KWAC C+YEN S KC CS G TE P+ + S + R + G+ S C + R R K + M + W C C+Y+N AV C C + R ++ ++ + S + PG ++PV N+ +R++ + W CT C+Y N +T+ C +C Sbjct: 11 GKWACEYCTYENWPSANKCTMCSAPRMRGPIITEEPYKTGPDL--------DPSPEWDPPRTDRGS--SLLICPDSSA-------------RPRVKPSS--------MAEIANKWSCHMCTYLNWPRAVRCTQC--LCQRPRTSSPTESPQTSGCR----PGVHSPVDTCEEYNDRNRLNTHQQHWTCTVCTYQNWPTTTACVVC 178
BLAST of SMED30010654 vs. Planmine SMEST
Match: SMESG000022828.1 (SMESG000022828.1) HSP 1 Score: 1433.7 bits (3710), Expect = 0.000e+0 Identity = 734/839 (87.49%), Postives = 746/839 (88.92%), Query Frame = 3 Query: 231 MNGQNFESLVECIETDENTEPLKEKIRQKISCVNQIDYFPVEVQFKLSKDQRYQNFDMDDLYKYLMNTKRIAQLYLNVYNKNNSLYFKKCLANEVKMNMPFDKYMEKIPKMNDSYIDESQLVEIIAIYVIIYSLLLNQEKILDKDDNMVCIYCDNLLGDGICEVCDDTRDYSTKKNISFEKPDKKKEKSQNLQTYNFESKQTIEEIDWENMDKITKSNVKENKRNGKASKAYNIKYTGEMKRDQPSVKTTDYYSLNETTCEDQRAD---------------------------------------------------GFGNKSNKTISAKTVIASNTNLSTLANTKSIVCDNKWACSKCSYENETSDVKCVTCSHTDSNGGKETESRSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCQKCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRLIKCRKCRKGFVNAPNNQNNDICGACKVSQKTVYNSLPSNNAIKSSPKPGSGDXXXXXXXXXXXXXLSLQNANVTQLAPSSGSGDTKRKSCKNCRKEFQPNSNNNWCITCEQMKWFCLNESCDSVNFKVEFCKKCQVKKGSDLSNYKAFPISLQGKEVLSYQCGYCYQIIRSTINSCNSCKNPRYLSNLVQCKCGWNYKKIENDCGKCKEKFSEKL 2594 MNGQNFESLVECIETDENTEPLKEKIRQKISC+NQIDYFPVEVQFKLSKDQRYQNFDMDDLYKYLMNTKRIAQLYLNVYNKNNSLYFKKCLANEVKMNMPFDKYMEKIPKMNDSYIDESQLVEIIAIYVIIYSLLLNQEKILDKDDNMVCIYCDNLLGDGICEVCDDTRDYSTKKNISFEKPDKKKEKSQNLQTYNFESKQTIEEIDWENMDKITKSNVKENKRNGKASKAYNIKYTGEMKRDQPSVKTTDYYSLNETTCEDQRAD GFGNKSNKTISAKTVIASNTNLSTLANTKSIVCDNKWACSKCSYENETSDVKCVTCSHTD NGGKETES SNKLPESQSITVTHENA TLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGY DRNRGKE KSRSDKLLEMQN VDSW+CAKCSYINK SAVTCETCGDTARNKRKANELQANKISEMKTLFEP ENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCQKCR IAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRLIKCRKCRKGFVNAPNNQNNDICGAC++SQKT Y SLP AIK SP PGSG AKKNIN+ K GNNLSLQNANVTQ A S GSGDTKRKSCK+CRKE QPNSNNNWCITCE+MKWFCLNE+CDSVNFKVEFCKKCQVKK GKEVLSYQCGYCYQIIRS +NSCNSCKNP+Y+SNLVQCKCGWNYKK EN+CGKC EKF EKL Sbjct: 1 MNGQNFESLVECIETDENTEPLKEKIRQKISCINQIDYFPVEVQFKLSKDQRYQNFDMDDLYKYLMNTKRIAQLYLNVYNKNNSLYFKKCLANEVKMNMPFDKYMEKIPKMNDSYIDESQLVEIIAIYVIIYSLLLNQEKILDKDDNMVCIYCDNLLGDGICEVCDDTRDYSTKKNISFEKPDKKKEKSQNLQTYNFESKQTIEEIDWENMDKITKSNVKENKRNGKASKAYNIKYTGEMKRDQPSVKTTDYYSLNETTCEDQRADRFGKESKTNNIKYKDEKKKHKINNDNSDQPSVKTPDCYSLYERTCEDQRADGFGNKSNKTISAKTVIASNTNLSTLANTKSIVCDNKWACSKCSYENETSDVKCVTCSHTDRNGGKETESGSNKLPESQSITVTHENAPTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYTDRNRGKETKSRSDKLLEMQNSVDSWECAKCSYINKISAVTCETCGDTARNKRKANELQANKISEMKTLFEPAENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCQKCRGIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRLIKCRKCRKGFVNAPNNQNNDICGACEISQKTDYYSLPIRIAIKPSPSPGSGGAKKNINDRKTGNNLSLQNANVTQPALSPGSGDTKRKSCKHCRKELQPNSNNNWCITCEKMKWFCLNEACDSVNFKVEFCKKCQVKK---------------GKEVLSYQCGYCYQIIRSILNSCNSCKNPKYISNLVQCKCGWNYKKTENNCGKCNEKFCEKL 824
BLAST of SMED30010654 vs. Planmine SMEST
Match: SMESG000022832.1 (SMESG000022832.1) HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0 Identity = 407/450 (90.44%), Postives = 414/450 (92.00%), Query Frame = 3 Query: 1245 KLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCQKCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRLIKCRKCRKGFVNAPNNQNNDICGACKVSQKTVYNSLPSNNAIKSSPKPGSGDXXXXXXXXXXXXXLSLQNANVTQLAPSSGSGDTKRKSCKNCRKEFQPNSNNNWCITCEQMKWFCLNESCDSVNFKVEFCKKCQVKKGSDLSNYKAFPISLQGKEVLSYQCGYCYQIIRSTINSCNSCKNPRYLSNLVQCKCGWNYKKIENDCGKCKEKFSEKL 2594 KLPESQSITVTHENA TLNNTNRIEDGNYWSCTQCSFKNK STFGCVTCGYIDRN+ KENKSRSDKLL+MQN VD WQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDN NTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKC KCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNP LIKCRKCRKGFVNAPNNQNNDICGACKVSQKT Y SLPSNNAIK SP PGSG AKKNIN+ K GNNLSLQNANVTQ A SSGSGDTKRKSCKNCRKE QPNSNNNWCITCE+MKWFCLNE+CDSVNF +FCKKCQVKK GKEVLSYQCGYCYQIIRSTINSCNSCKNPRY+ NLVQCKCGWNYKKIENDCGKCKEKFSEKL Sbjct: 215 KLPESQSITVTHENAPTLNNTNRIEDGNYWSCTQCSFKNKNSTFGCVTCGYIDRNKVKENKSRSDKLLKMQNSVDFWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEPGENAPVPNNASRIDNYNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCHKCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPHLIKCRKCRKGFVNAPNNQNNDICGACKVSQKTDYYSLPSNNAIKPSPSPGSGGAKKNINDRKTGNNLSLQNANVTQPALSSGSGDTKRKSCKNCRKELQPNSNNNWCITCEKMKWFCLNEACDSVNFNKKFCKKCQVKK---------------GKEVLSYQCGYCYQIIRSTINSCNSCKNPRYIVNLVQCKCGWNYKKIENDCGKCKEKFSEKL 649
BLAST of SMED30010654 vs. Planmine SMEST
Match: SMESG000022833.1 (SMESG000022833.1) HSP 1 Score: 125.561 bits (314), Expect = 1.494e-29 Identity = 98/321 (30.53%), Postives = 149/321 (46.42%), Query Frame = 3 Query: 1473 WQCAKCSY-INKTSAVTCETCGDTARNKRKANELQANKIS--EMKTLFEPGENAPVPNNASRIDNDNTWQCTQCSYVNEKSTSVCEICFNIDRNPGKEAEGIPEETWRCNKCGNNNSFDVYKCQKCREIAEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRLIKCRKCRKGFVNAPNNQNNDICGACKVSQKTVYNSLPSNNAIKSSPKPGSGDXXXXXXXXXXXXXLSLQNANVTQLAPSSGSGDTKRKSCKNCRKEFQPNSNNNWCITCEQMKWFCLNESCDSVNFKV-EFCKKCQVKKGSDLSNYKAFPISLQG-KEV 2420 W+C CS+ NK C C +++ + +KIS E K L E EN + N+ + W C QCS+ N+K+ +C +C+ NP + E+TW C+KC N FD Y+C +C +A F DKWVC +CSF+N+KL C VCD+ N LIKC+KC K N Q+N+ C +C ++ Y +P P + + + + S + + + D+K K Q W+C+N+ C ++NF + ++C KC VK SN +F I L+ KEV Sbjct: 311 WECKSCSFNKNKEHMQFCSVCLFDKQSQIDSENKNMDKISVTEDKILIEK-ENFNIEGNSDK------WSCNQCSFKNDKTDLLCSLCYA--NNPYENISHDVEDTWNCSKCKMKNPFDRYRCHQCDGLAGFFDKWVCEKCSFFNEKLDRNCYVCDLVNSNLIKCKKCEK---NDVIEQDNEFCTSC--IKENDYRGY-------GTPTPVNDISSNKSSRNEQDGKYSKNRIPIEEASNKITGKDSKLK----------------------QFHWYCINKKCSAINFSMAKYCSKCFVKNECASSN--SFFIVLKNDKEV 586 HSP 2 Score: 73.1738 bits (178), Expect = 4.909e-13 Identity = 120/512 (23.44%), Postives = 208/512 (40.62%), Query Frame = 3 Query: 294 LKEKIRQKISCVNQIDYFPVEVQFKLSKDQRYQNFDMDDLYKYLMNTKRIAQLYLNVYNKNNSLYFKKCLANEVKMNMPFDKYMEKIP------KMNDSYID---------ESQLVEIIAIYVIIYSLLLNQEKILDKDDNMV---CIYCDNLLGDGICEVCDDTRDYSTKKN---ISFEKP----DKKKEKSQNLQTYNFESKQTIEEIDWENMDKI-TKSNVKENKRNGKASKAYNIKYTGEMKRDQPSVKTTDYYSLNETTCEDQRADGFGNKSNKTISAKTV--IASNTNLSTLANTKSIVCDNK------WACSKCSYENETSDVKCVTCSHTDSNGGKETESRS-NKLPESQS-ITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTC----GYIDRNRGKEN--------------KSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLF---------EPGENAPVPNN 1640 LK+ ++ IS +N +D F + D + LY L +K I+QL N Y +NN LY K C N +Y+EKI + +Y+D E+ L+E+++ Y+II+ +L +E DN++ CIYCD ++ IC VC+ K+ ++F+ P + K+Q+L + + +E + D I TK N + N + I ++ + S ++ N T+ D FG +K ++K + S+ N+S L+ + + + W C CS+ ++ + D ++E+++ +K+ ++ I + EN + N+++ WSC QCSFKN K+ C C Y + + E+ + R + + F D W C KCS+ N+ C C N K + + N + E F G P P N Sbjct: 19 LKDVLKSSISKINNVDEFIKFFFKDFKCTDELKKLDEEVLYVNLAASKAISQLAWNAY-QNNGLY-KDCHINA--------QYLEKIYFIMGNCNLYTNYLDKFKLGTEFLENVLIEMLSRYIIIHCILYYKEI-----DNLMFKSCIYCDCVVIGDICSVCEGNSFVLKDKSGDPMTFDFPFITDNVTDLKNQDLSSSSSNPTDCLESVS----DSIKTKDNDELNSTINISDYTEKIVSDSAIELNHKSRNQEVFHGSNLTS----FNDSFGLPEDKNQASKEYKDLNSSENISKLSPDFDLATEIEQTKETFWECKSCSFNKNKEHMQFCSVCLFDKQSQIDSENKNMDKISVTEDKILIEKENFNIEGNSDK------WSCNQCSFKNDKTDLLCSLCYANNPYENISHDVEDTWNCSKCKMKNPFDRYRCHQCDGLAGFFDKWVCEKCSFFNEKLDRNCYVCDLVNSNLIKCKKCEKNDVIEQDNEFCTSCIKENDYRGYGTPTPVN 501
BLAST of SMED30010654 vs. Planmine SMEST
Match: SMESG000022823.1 (SMESG000022823.1) HSP 1 Score: 59.3066 bits (142), Expect = 1.065e-8 Identity = 124/550 (22.55%), Postives = 218/550 (39.64%), Query Frame = 3 Query: 363 FKLSKDQRYQNFDMDDLYKYLMNTKRIAQLYLNVYNKNNSLYFKKCLANEVKMNM------PFDKYMEKIPKMNDSYIDESQLVEIIAIYVIIYSLLLNQEKILDKDDNM-------VCIYCDNLL--GDGICEVCDDTRD---------YSTKKNISFEKPDKKKEKSQNL--------------QTYNFESKQTIEEIDWENMDKI---------TKSNVKENKRN-GKASKAYNIKYTGEMKRDQPSVKTTDYY---SLNETTCEDQRADGFGNKSN--KTISAKTVIASNT-------NLSTLANTKSIVCDNKWACSKCSYENETSDVKCVTCSHTDSNGGKETESRSNKLPESQSITVTHENASTLNNTNRIEDGNYWSCTQCSFKNKKSTFGCVTCGYIDRNRGKENKSRSDKLLEMQNFVDSWQCAKCSYINKTSAVTCETCGDTARNKRKANELQANKISEMKTLFEP-GENAPVPNNASRIDNDNTWQC--TQCSYVNEKSTSVCEIC-FNIDRNPGKEAEGIPEETWRCNKCGNNNSFD 1820 ++S D+ Y N+ D+LY L N ++ AQ+ LN+Y+ ++KC ++ ++ PF +E + ++N I E+ + E + + +IY L E LDK+ + +C +C+ L G C VC+ +D Y T + ++P K QN+ Y+++ E+ +EN+++I + N+K N+ N K SK + E K + + D + LNE +Q+ +G + N K+ + +V NT N+S++ + K ++C N+ C+ C N E+ L E+ + +AST N + + W C +C N Y D N+ R+ KL W+C +C +N C +CG T N + + ++ KI+ + + NAP W C +CSY+N+ + C IC F + + I W C KC N ++ Sbjct: 4 LQISIDE-YNNYSTDNLYLELRNCRKKAQILLNLYHCPKE--YEKCKLLDIGSHLNNTNNKPFG--IENVQEINSDIIVEA-IGEFVKYHHVIYERELQVE--LDKNKEITDLLIGSICCFCEMRLDRGQSYCNVCEALKDDMTKYATNHYETLMLVKTQQPKKTSFIYQNVDKVPNFDPITHLNGANYDYKITYKPEKNSYENINEIQNAANRKEKSTENLKINEENIVKTSKDF-----SEWKCSKCGLLNYDEFCMACLNEKVITNQK---YGQEINLEKSGAKNSVEKRNTTSTYRYENVSSIESEKCVICRNETNCN---------------CKSNTKNSAITNENHKETLVENWE----NNDASTTN-----INSDQWKCDKCGMLN-----------YDDFCSACLNERRTIKL---------WKCERCKKLNDFFIEKCFSCGKTNENIQLCKQCKSIKIAADRRFCDTCYNNAP------------HWSCWNEKCSYLNDPFNNYCAICKFQRHKKDIFSIKDISGMFWLCKKCSAINDYE 481
BLAST of SMED30010654 vs. Planmine SMEST
Match: SMESG000022826.1 (SMESG000022826.1) HSP 1 Score: 58.151 bits (139), Expect = 2.238e-8 Identity = 59/253 (23.32%), Postives = 89/253 (35.18%), Query Frame = 3 Query: 1851 AEFADKWVCGQCSFYNDKLSPRCGVCDMDNPRL-------------------IKCRKCRKGFVNAPNNQNND-ICGACKVSQK-------TVYNSLPSNNAIKSSPKPGSGD---------XXXXXXXXXXXXXLSLQNANVTQLAPSSGSGDTKRKSCKNCRKEFQPNSNNNWCITCEQMKWFCLNESCDSVN-FKVEFCKKCQVKKGSDLSNYKAFPISLQGKEVLSYQCGYCYQIIRSTINSCNSCKNPR 2498 A+ D W+C QCSF ND CG C + N L I + FV A N +C C K T S+ N I S P S + + K+ +Q+ N + S ++C C+ N C+ C ++ C NE+C ++ +C KC+V+K SD+ N F + +QC +C++ C C N R Sbjct: 249 AQSRDSWICNQCSFVNDSDLKNCGTCFLSNDLLKENSSSLTSPSDKSENENEIGLENSTENFVEAAKTVYNYWVCPNCTFKNKSDCLNCETCLKSIDINTQIISEYLPDSIENPIENLPKLFQNENLYEKSIKIPDVQDLNTPIEKKTGNSSKGSLRNCLKCKTLIDKNQQEFLCVDCSKLYLVCCNEACTQLSKADKSYCSKCKVRKNSDMKNGNLFDVKSMFSYEKKWQCSFCFRFNDKFQKKCRKCHNSR 501 The following BLAST results are available for this feature:
BLAST of SMED30010654 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30010654 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30010654 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of SMED30010654 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30010654 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30010654 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30010654 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of SMED30010654 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010654 ID=SMED30010654|Name=SMED30010654|organism=Schmidtea mediterranea sexual|type=transcript|length=2801bpback to top protein sequence of SMED30010654-orf-1 >SMED30010654-orf-1 ID=SMED30010654-orf-1|Name=SMED30010654-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=789bp MNGQNFESLVECIETDENTEPLKEKIRQKISCVNQIDYFPVEVQFKLSKDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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