SMED30010591

Overview
NameSMED30010591
Smed IDSMED30010591
Length (bp)1107
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010591

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
reproductive organSMED30010591SMESG000075750.1 Contig26774newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30010591SMESG000075750.1 Contig26774uc_Smed_v2PMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30010591 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.011698:7539..8645 -5535
Homology
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BLAST of SMED30010591 vs. UniProt/SwissProt
Match: sp|Q9M022|AIRP2_ARATH (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.367e-6
Identity = 48/185 (25.95%), Postives = 74/185 (40.00%), Query Frame = 1 
Query:  448 IRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRP------------DCPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCI-ENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHEGNKRID-----------ENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPF 930
            +R S ++ L +  A I+F   + S +P + +  ++   + Y P            DC ++  + L RI I            L E KT I E Y +   + L    GIT    R  K+I +  +    R D           E +C ICL++ NK     L  C H +C  C  ++     SCPF
Sbjct:    1 MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFAGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNK---VVLPTCNHSMCINCYRNWRARSQSCPF 182
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BLAST of SMED30010591 vs. Planmine SMEST
Match: SMESG000075750.1 (SMESG000075750.1)

HSP 1 Score: 714.531 bits (1843), Expect = 0.000e+0
Identity = 353/355 (99.44%), Postives = 353/355 (99.44%), Query Frame = 1 
Query:   22 MDFDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDRQPIFSVFTLNESRTLLWCQNQAFSNEELKIQDELECYWKSYVSVIIQSLHFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPDCPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHEGNKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFENDRSIESEFQSTFNTAFFNGNNRGMSKLIQDFLEIDHFLD 1086
            MDFDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDRQPIFSVFTLNESRTLLWCQNQAFSNEELKIQDELE YWKSYVSVIIQSLHFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPDCPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHE NKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFENDRSIESEFQSTFNTAFFNGNNRGMSKLIQDFLEIDHFLD
Sbjct:    1 MDFDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDRQPIFSVFTLNESRTLLWCQNQAFSNEELKIQDELESYWKSYVSVIIQSLHFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPDCPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHEVNKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFENDRSIESEFQSTFNTAFFNGNNRGMSKLIQDFLEIDHFLD 355
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BLAST of SMED30010591 vs. Planmine SMEST
Match: SMESG000030485.1 (SMESG000030485.1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.633e-23
Identity = 81/329 (24.62%), Postives = 154/329 (46.81%), Query Frame = 1 
Query:   46 CSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDRQPIFSVFT-----------LNESRTLLWCQNQAFSNEELKIQDELECYWKSYVSVIIQSLHFYIDTLEKVDLMLDT-------WISHAIPFDFYQINEFYNFINENLALIRNSL-EEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNII--FYRPDCPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHEGNKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFEN 969
            CS+CYDS+ + +  +   C H+ C  C + +VF++   C  D + I +V             + + ++L   +N+  S E   I +++   W        +++HF    L+K  ++L+        W++     D   +++F   I   +    +SL + D+     K ++ ++  +  P +  +PF+ NI+   Y  +    LI+ +F   ID       +QN L +    I  +     N   +L   T+S+  +N+++YE + + +++ID + CLICL  I     AKLS CQHKIC  C++ F + + SCPF    ++   +  +
Sbjct:   11 CSICYDSLKNCDSVVLPDCLHRFCRNCANEIVFKRVAKCQLDNRRINAVINCIIDTNGKNQLIIKVKSLKQYRNKILSMEPQSITEDIMNTWAE------RTMHFSC-VLDKTSVILNLLKNKFTLWMAEKTAIDSETVSQFNYAITHKMVNELDSLYKADIFKLTDKERYYRKYANRHPTKCISPFLINILNSVYIYE-TIDLIMPVFCCLID---SGIVKQNYLLKCVKAIGKHFEHLRNISNYLISFTLSFLNNNREVYEKLQKCHRQIDIDNCLICLCQIYFYPHAKLSNCQHKICHSCIDQFLITYASCPFHDATITQLTLVTD 328
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BLAST of SMED30010591 vs. Planmine SMEST
Match: SMESG000067204.1 (SMESG000067204.1)

HSP 1 Score: 100.523 bits (249), Expect = 6.556e-23
Identity = 103/385 (26.75%), Postives = 173/385 (44.94%), Query Frame = 1 
Query:   28 FDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDRQPIFSVFTLNESR---------TLLWCQNQAFSNEELKIQDELECYWKSYVSVIIQSLHFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPD---CPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHEGNKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFENDRSIESEFQSTFNTAFFNG----------------NNRGMSKLIQ--DF--LEIDHFLD 1086
            FD E  C +CYD    NN   F+ C H+IC  C   +VF+ + ICPFDRQ I   + ++E+          ++ + Q++A  ++   I + +E  W S++S +  SL   I+ +E + L L   I  A   D      F   + EN   + +   + L    A   + K + S    + +   IN +  ++      P  L  +L  +  ++ N    ++N+ +     IE  +I  S   L      I + + N  I++ I  G+ +   + CLIC+  I K K++K + C HKIC  C   F + HG CPFD  +LS   +F   ++ + + +S   + F                   NNR +  LI+  DF  L I++F+D
Sbjct:    4 FDNEKICLICYDE-GKNNFVSFKSCNHRICKNCSFEVVFQNQPICPFDRQEI--SYVIDETNLDIKNSQPLSIEYYQSRAVKSDPEIIINIIEATWSSFLSQLNDSLKTLIEIIESM-LKLHKEILKAKLIDLNNKLTF-ELLMENFNDVLDIFNQTLNCTKATEIYCKSLESDSYSELSLTQINIVNAHKVLINLSPLELNYHL--VLANMTNLGSIEKNIETMETDLIELKEISLSEKCLL-----IMFVKSNGQIFKSIFPGSDQHPIDSCLICVQPIKKLKYSKFNNCAHKICLACCYKFMISHGRCPFDGTELSELNVFVRMKNSDFDLKSKKTSVFILNRIEDLCFQLFKNIIEFNNRKIKTLIEKNDFFVLLINYFID 376
[Close]
BLAST of SMED30010591 vs. Planmine SMEST
Match: SMESG000067204.1 (SMESG000067204.1)

HSP 1 Score: 100.523 bits (249), Expect = 6.896e-23
Identity = 103/385 (26.75%), Postives = 173/385 (44.94%), Query Frame = 1 
Query:   28 FDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDRQPIFSVFTLNESR---------TLLWCQNQAFSNEELKIQDELECYWKSYVSVIIQSLHFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPD---CPWSLIVYLFRISIDLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYEGIHEGNKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFENDRSIESEFQSTFNTAF----------------FNGNNRGMSKLIQ--DF--LEIDHFLD 1086
            FD E  C +CYD    NN   F+ C H+IC  C   +VF+ + ICPFDRQ I   + ++E+          ++ + Q++A  ++   I + +E  W S++S +  SL   I+ +E + L L   I  A   D      F   + EN   + +   + L    A   + K + S    + +   IN +  ++      P  L  +L  +  ++ N    ++N+ +     IE  +I  S   L      I + + N  I++ I  G+ +   + CLIC+  I K K++K + C HKIC  C   F + HG CPFD  +LS   +F   ++ + + +S   + F                   NNR +  LI+  DF  L I++F+D
Sbjct:    2 FDNEKICLICYDE-GKNNFVSFKSCNHRICKNCSFEVVFQNQPICPFDRQEI--SYVIDETNLDIKNSQPLSIEYYQSRAVKSDPEIIINIIEATWSSFLSQLNDSLKTLIEIIESM-LKLHKEILKAKLIDLNNKLTF-ELLMENFNDVLDIFNQTLNCTKATEIYCKSLESDSYSELSLTQINIVNAHKVLINLSPLELNYHL--VLANMTNLGSIEKNIETMETDLIELKEISLSEKCLL-----IMFVKSNGQIFKSIFPGSDQHPIDSCLICVQPIKKLKYSKFNNCAHKICLACCYKFMISHGRCPFDGTELSELNVFVRMKNSDFDLKSKKTSVFILNRIEDLCFQLFKNIIEFNNRKIKTLIEKNDFFVLLINYFID 374
[Close]
BLAST of SMED30010591 vs. Planmine SMEST
Match: SMESG000067182.1 (SMESG000067182.1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.781e-22
Identity = 98/376 (26.06%), Postives = 159/376 (42.29%), Query Frame = 1 
Query:   22 MDFDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFDR---QPIFSVFTLNES-------------RTLLWCQNQAFSNEELKIQDELECYWKSYVSVIIQSLHFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEEDLPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPDCPWSLIVYLFRISIDLKNKKE----TQQNLLSEAKTCIENYKIKSSNFLLF------LTGITISYFRDNKDIYEGIHEGNKRIDENQCLICLDLIN-KNKFAKLSECQHKICEKCVNDFGVLHGSCPFDSDQLSNFIIFENDRSIESEFQSTFNTAFFNGNNRGMSKLIQDFLE 1068
            MD++F+T C +CYD+++ +N+    +C H  C  C+  L+F +   CP DR   Q +   F L ++              TL   +   F  +  +I  E       Y+    Q+L+  I+ ++ V      W   +I     ++NE        L LI     E   S   K+ F K+  S F R     ++  +   +    +  ++ L ++ I L+N          N + +++  I+  ++       F         + ISY   N+D+Y  I    K  D N+CLIC   I  K K++K ++C HKIC  C  +F + H SCPFDSD L    I +   +     Q      + N  N+  SK IQD  E
Sbjct:    1 MDYEFDTTCVICYDNLETSNVVTLNKCPHVFCRSCVKELIFSEDPRCPLDRIEIQVVHDPFLLKQNLDFTEFKPISKYIETLFIFEADYFLTDIREIISE-------YLLKFNQNLNQIIEAMKDVQTFYRKW---SINRQTLKLNEIRTL----LTLIEIIRSEITKSDNIKLFFCKKS-SFFLR-----YLKGLTEEKIRLEYINLLNLDKLKIKLRNSTSHCICLTNNTIQQSEVLIKYMEVIDEELTEFQQISNYAKCLIISYVPKNRDLYSKIKPNIKENDTNKCLICETEIKLKGKYSKFNQCDHKICILCTENFMITHASCPFDSDDLIGLEICDQSENTLINSQEYLLRNYLNIGNKLFSK-IQDLNE 355
The following BLAST results are available for this feature:
BLAST of SMED30010591 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9M022|AIRP2_ARATH2.367e-625.95E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis t... [more]
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BLAST of SMED30010591 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010591 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000075750.10.000e+099.44SMESG000075750.1[more]
SMESG000030485.14.633e-2324.62SMESG000030485.1[more]
SMESG000067204.16.556e-2326.75SMESG000067204.1[more]
SMESG000067204.16.896e-2326.75SMESG000067204.1[more]
SMESG000067182.17.781e-2226.06SMESG000067182.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010591 ID=SMED30010591|Name=SMED30010591|organism=Schmidtea mediterranea sexual|type=transcript|length=1107bp
TTTTAAAGTTTTTTAACAAAAATGGATTTCGACTTCGAAACTTGCTGCTC
TGTGTGCTATGATTCGATGGATGACAATAATATCGCAATTTTCCAACAGT
GTCGGCACAAAATTTGTATAATTTGTCTTCACCATTTGGTCTTTGAAAAG
AAATTCATTTGTCCATTTGATAGACAACCAATCTTTAGCGTTTTTACTTT
GAATGAATCACGAACGCTTTTGTGGTGTCAAAATCAAGCTTTTAGCAACG
AAGAATTAAAAATACAGGACGAATTGGAATGTTACTGGAAATCCTACGTC
TCCGTAATTATTCAATCTCTACATTTCTACATTGACACGTTGGAAAAAGT
CGATCTTATGTTAGATACGTGGATAAGTCACGCCATTCCATTTGATTTTT
ATCAAATTAATGAATTTTATAATTTTATAAATGAAAACTTAGCTTTAATT
CGTAATTCATTGGAGGAGGACCTTCCAAGCAAACCCGCAAAGATCAAATT
TATCAAGGAAGTTTTATCTCATTTTCCTCGGCAAAACAACACCCCGTTTA
TTAACAATATCATTTTTTACAGACCAGATTGTCCATGGTCACTGATAGTT
TACCTTTTTAGGATTTCAATTGATCTGAAAAATAAAAAAGAAACTCAACA
GAATTTATTGTCCGAAGCTAAAACTTGCATAGAAAATTATAAAATAAAAT
CAAGCAACTTTTTACTGTTTTTAACTGGAATTACCATCTCTTATTTTCGG
GACAACAAGGACATTTATGAGGGAATACATGAAGGAAATAAAAGGATTGA
TGAAAACCAATGCCTAATCTGTCTAGATTTAATAAATAAAAATAAATTCG
CAAAATTATCCGAATGTCAGCACAAAATCTGCGAAAAATGCGTCAACGAT
TTTGGCGTACTTCATGGAAGTTGCCCGTTTGACTCAGATCAATTGTCGAA
TTTTATCATTTTTGAAAATGATCGCTCCATTGAATCGGAATTTCAATCTA
CGTTTAATACAGCATTTTTCAATGGAAACAATCGAGGAATGTCTAAATTA
ATTCAAGACTTTTTGGAAATCGATCACTTTTTAGATTAAAATGTATTAAT
ACTTGCT
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protein sequence of SMED30010591-orf-1

>SMED30010591-orf-1 ID=SMED30010591-orf-1|Name=SMED30010591-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=356bp
MDFDFETCCSVCYDSMDDNNIAIFQQCRHKICIICLHHLVFEKKFICPFD
RQPIFSVFTLNESRTLLWCQNQAFSNEELKIQDELECYWKSYVSVIIQSL
HFYIDTLEKVDLMLDTWISHAIPFDFYQINEFYNFINENLALIRNSLEED
LPSKPAKIKFIKEVLSHFPRQNNTPFINNIIFYRPDCPWSLIVYLFRISI
DLKNKKETQQNLLSEAKTCIENYKIKSSNFLLFLTGITISYFRDNKDIYE
GIHEGNKRIDENQCLICLDLINKNKFAKLSECQHKICEKCVNDFGVLHGS
CPFDSDQLSNFIIFENDRSIESEFQSTFNTAFFNGNNRGMSKLIQDFLEI
DHFLD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 9..50
e-value: 0.021
score: 24.0
coord: 264..304
e-value: 1.8E-4
score: 30.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 9..51
score: 10.63
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 264..305
score: 10.247
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 243..332
e-value: 2.7E-7
score: 31.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 3..64
e-value: 6.4E-7
score: 30.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 282..291
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 27..36
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 257..308
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 7..55