Short coiled-coil protein homolog
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010576 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of Short coiled-coil protein homolog vs. Ensembl Human
Match: SCOC (short coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:20335]) HSP 1 Score: 98.5969 bits (244), Expect = 2.468e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Human
Match: SCOC (short coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:20335]) HSP 1 Score: 98.5969 bits (244), Expect = 2.468e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Human
Match: SCOC (short coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:20335]) HSP 1 Score: 98.5969 bits (244), Expect = 2.468e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Human
Match: SCOC (short coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:20335]) HSP 1 Score: 98.5969 bits (244), Expect = 2.468e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Human
Match: SCOC (short coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:20335]) HSP 1 Score: 98.5969 bits (244), Expect = 2.468e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Celegans
Match: unc-69 (Short coiled-coil domain-containing protein UNC-69 splice variant T07A5.6b [Source:UniProtKB/TrEMBL;Acc:G5EDQ5]) HSP 1 Score: 67.781 bits (164), Expect = 1.265e-14 Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = 3 Query: 243 KQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLM 383 K ++I+Q++ELQ+TL+DLS RVE VKEE++KLRSENQ+L QY +NLM Sbjct: 46 KARMITQVLELQNTLDDLSQRVESVKEESLKLRSENQVLGQYIQNLM 92
BLAST of Short coiled-coil protein homolog vs. Ensembl Celegans
Match: unc-69 (Short coiled-coil domain-containing protein UNC-69 splice variant T07A5.6b [Source:UniProtKB/TrEMBL;Acc:G5EDQ5]) HSP 1 Score: 67.3958 bits (163), Expect = 2.016e-14 Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = 3 Query: 243 KQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLM 383 K ++I+Q++ELQ+TL+DLS RVE VKEE++KLRSENQ+L QY +NLM Sbjct: 46 KARMITQVLELQNTLDDLSQRVESVKEESLKLRSENQVLGQYIQNLM 92
BLAST of Short coiled-coil protein homolog vs. Ensembl Celegans
Match: unc-69 (Short coiled-coil domain-containing protein UNC-69 splice variant T07A5.6b [Source:UniProtKB/TrEMBL;Acc:G5EDQ5]) HSP 1 Score: 67.781 bits (164), Expect = 4.825e-14 Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = 3 Query: 243 KQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLM 383 K ++I+Q++ELQ+TL+DLS RVE VKEE++KLRSENQ+L QY +NLM Sbjct: 46 KARMITQVLELQNTLDDLSQRVESVKEESLKLRSENQVLGQYIQNLM 92
BLAST of Short coiled-coil protein homolog vs. Ensembl Fly
Match: CG5934 (gene:FBgn0039505 transcript:FBtr0085158) HSP 1 Score: 93.9745 bits (232), Expect = 3.107e-24 Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 3 Query: 192 ASTDNKNH-----MEIS-DSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +ST + +H ME++ D +EK +LI+Q++ELQ+TL+DLS RV+ VKEEN+KLRSENQ+L QY ENLMSASSVFQ+ SP ++ Sbjct: 49 SSTPDSSHNSLEAMEMAQDDREEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTSPSAAKK 134
BLAST of Short coiled-coil protein homolog vs. Ensembl Zebrafish
Match: scoca (short coiled-coil protein a [Source:NCBI gene;Acc:562638]) HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-25 Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 3 Query: 237 QEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 16 EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 80
BLAST of Short coiled-coil protein homolog vs. Ensembl Zebrafish
Match: scoca (short coiled-coil protein a [Source:NCBI gene;Acc:562638]) HSP 1 Score: 96.2857 bits (238), Expect = 1.175e-25 Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 3 Query: 237 QEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 15 EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 79
BLAST of Short coiled-coil protein homolog vs. Ensembl Zebrafish
Match: scoca (short coiled-coil protein a [Source:NCBI gene;Acc:562638]) HSP 1 Score: 97.0561 bits (240), Expect = 1.448e-25 Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 3 Query: 237 QEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 55 EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 119
BLAST of Short coiled-coil protein homolog vs. Ensembl Zebrafish
Match: scocb (short coiled-coil protein b [Source:NCBI gene;Acc:791709]) HSP 1 Score: 93.9745 bits (232), Expect = 8.531e-25 Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 234 IQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ++EK +LI+Q++ELQ+TLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 15 LEEKTRLINQVLELQNTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDSKSKRK 80
BLAST of Short coiled-coil protein homolog vs. Ensembl Xenopus
Match: SCOC (short coiled-coil protein [Source:NCBI gene;Acc:100494794]) HSP 1 Score: 96.6709 bits (239), Expect = 3.586e-25 Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 234 IQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 60 LEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 125
BLAST of Short coiled-coil protein homolog vs. Ensembl Xenopus
Match: SCOC (short coiled-coil protein [Source:NCBI gene;Acc:100494794]) HSP 1 Score: 96.6709 bits (239), Expect = 5.890e-25 Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 234 IQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 75 LEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 140
BLAST of Short coiled-coil protein homolog vs. Ensembl Mouse
Match: Scoc (short coiled-coil protein [Source:MGI Symbol;Acc:MGI:1927654]) HSP 1 Score: 98.5969 bits (244), Expect = 1.694e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Mouse
Match: Scoc (short coiled-coil protein [Source:MGI Symbol;Acc:MGI:1927654]) HSP 1 Score: 98.5969 bits (244), Expect = 1.694e-26 Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 8 AVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 82
BLAST of Short coiled-coil protein homolog vs. Ensembl Mouse
Match: Scoc (short coiled-coil protein [Source:MGI Symbol;Acc:MGI:1927654]) HSP 1 Score: 97.8265 bits (242), Expect = 2.977e-26 Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 3 Query: 183 LINAS--TDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ++NA D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 1 MMNADMDVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 81
BLAST of Short coiled-coil protein homolog vs. Ensembl Mouse
Match: Scoc (short coiled-coil protein [Source:MGI Symbol;Acc:MGI:1927654]) HSP 1 Score: 98.9821 bits (245), Expect = 3.584e-26 Identity = 50/87 (57.47%), Postives = 69/87 (79.31%), Query Frame = 3 Query: 180 QLINA---STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +++NA + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 43 KMMNADMDAVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 125
BLAST of Short coiled-coil protein homolog vs. UniProt/SwissProt
Match: sp|Q5RJZ6|SCOC_RAT (Short coiled-coil protein OS=Rattus norvegicus OX=10116 GN=Scoc PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.306e-25 Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 3 Query: 120 DYDKPKNEIKMGSLNFSPDNQLINA---STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 D D + G+ P +++NA + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 22 DTDHSLKSLHSGAERLFP--KMMNADMDAVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
BLAST of Short coiled-coil protein homolog vs. UniProt/SwissProt
Match: sp|Q78YZ6|SCOC_MOUSE (Short coiled-coil protein OS=Mus musculus OX=10090 GN=Scoc PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.507e-25 Identity = 50/87 (57.47%), Postives = 69/87 (79.31%), Query Frame = 3 Query: 180 QLINA---STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +++NA + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 43 KMMNADMDAVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 125
BLAST of Short coiled-coil protein homolog vs. UniProt/SwissProt
Match: sp|Q9UIL1|SCOC_HUMAN (Short coiled-coil protein OS=Homo sapiens OX=9606 GN=SCOC PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 7.101e-25 Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 3 Query: 123 YDKPKNEIKMGSLNFSPDNQLINA---STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 Y +PK+ + +++NA + D +N +E+ +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 68 YPRPKSLLP----------KMMNADMDAVDAENQVEL----EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
BLAST of Short coiled-coil protein homolog vs. UniProt/SwissProt
Match: sp|Q08BG7|SCOCA_DANRE (Short coiled-coil protein A OS=Danio rerio OX=7955 GN=scoca PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.093e-24 Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 3 Query: 237 QEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 55 EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 119
BLAST of Short coiled-coil protein homolog vs. UniProt/SwissProt
Match: sp|Q5XJK1|SCOCB_DANRE (Short coiled-coil protein B OS=Danio rerio OX=7955 GN=scocb PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.076e-24 Identity = 44/66 (66.67%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 234 IQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ++EK +LI+Q++ELQ+TLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 11 LEEKTRLINQVLELQNTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDSKSKRK 76
BLAST of Short coiled-coil protein homolog vs. TrEMBL
Match: A0A2D0QNE2 (short coiled-coil protein B-like isoform X1 OS=Ictalurus punctatus OX=7998 GN=LOC108263532 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.979e-26 Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 3 Query: 96 IPLSSDESDYDKPKNEIKMGSLNFSPDNQLINASTDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 I L+ D +D D +L P+ QL + D ME ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 15 ISLADDSADCDS-------AALRPKPEEQLSTMNCDMDGDMENQVEVEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 119
BLAST of Short coiled-coil protein homolog vs. TrEMBL
Match: A0A4W5NEB0 (Short coiled-coil protein OS=Hucho hucho OX=62062 GN=SCOC PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.270e-26 Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 3 Query: 195 STDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRRG 434 S+D ME ++EK +LI+Q++ELQHTLEDLSSRV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+G Sbjct: 2 SSDGDGDMENQAELEEKTRLINQVLELQHTLEDLSSRVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRKG 81
BLAST of Short coiled-coil protein homolog vs. TrEMBL
Match: A0A5N5PPB6 (Uncharacterized protein OS=Pangasianodon hypophthalmus OX=310915 GN=PHYPO_G00175620 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.646e-26 Identity = 53/93 (56.99%), Postives = 68/93 (73.12%), Query Frame = 3 Query: 153 GSLNFSPDNQLINASTDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +L PD QL + D ME ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 37 AALRPRPDEQLSTMNCDMDGDMENQVEVEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 129
BLAST of Short coiled-coil protein homolog vs. TrEMBL
Match: A0A3P8PIB7 (Short coiled-coil protein a OS=Astatotilapia calliptera OX=8154 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.593e-25 Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 3 Query: 153 GSLNFSPDNQLINASTDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +L +N+LI + D ME ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 27 AALYTKQENELITMNCDIDGDMENQVEVEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 119
BLAST of Short coiled-coil protein homolog vs. TrEMBL
Match: A0A3P9BZJ9 (Short coiled-coil protein a OS=Maylandia zebra OX=106582 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.593e-25 Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 3 Query: 153 GSLNFSPDNQLINASTDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +L +N+LI + D ME ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 27 AALYTKQENELITMNCDIDGDMENQVEVEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 119
BLAST of Short coiled-coil protein homolog vs. Ensembl Cavefish
Match: scoca (short coiled-coil protein B-like [Source:NCBI gene;Acc:103034491]) HSP 1 Score: 98.2117 bits (243), Expect = 5.285e-26 Identity = 45/66 (68.18%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 234 IQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 53 LEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 118
BLAST of Short coiled-coil protein homolog vs. Ensembl Cavefish
Match: scocb (short coiled-coil protein b [Source:NCBI gene;Acc:791709]) HSP 1 Score: 94.7449 bits (234), Expect = 3.431e-25 Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 3 Query: 198 TDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +D ME ++EK +LI+Q++ELQ+TLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 4 SDVDGDMENQVELEEKTRLINQVLELQNTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDSKSKRK 81
BLAST of Short coiled-coil protein homolog vs. Ensembl Cavefish
Match: scocb (short coiled-coil protein b [Source:NCBI gene;Acc:791709]) HSP 1 Score: 93.5893 bits (231), Expect = 8.293e-25 Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 3 Query: 216 MEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 ME ++EK +LI+Q++ELQ+TLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 5 MENQVELEEKTRLINQVLELQNTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDSKSKRK 76
BLAST of Short coiled-coil protein homolog vs. Ensembl Sea Lamprey
Match: scocb (short coiled-coil protein b [Source:NCBI gene;Acc:791709]) HSP 1 Score: 97.8265 bits (242), Expect = 4.014e-27 Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 3 Query: 228 DSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 + ++EK +LI+Q++ELQHTLEDLSSRV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 6 EEVEEKTRLINQVLELQHTLEDLSSRVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDSKSKRK 73
BLAST of Short coiled-coil protein homolog vs. Ensembl Nematostella
Match: EDO49602 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RFH2]) HSP 1 Score: 84.3445 bits (207), Expect = 1.266e-21 Identity = 39/65 (60.00%), Postives = 55/65 (84.62%), Query Frame = 3 Query: 237 QEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 +EK ++IS+++ELQ+TL+DLS RV+ VK+EN+KL+SENQ+L QY ENLMSASSVFQ + + +R Sbjct: 8 EEKARIISEVLELQNTLDDLSQRVDAVKDENLKLKSENQVLGQYIENLMSASSVFQPTNTGSKKR 72
BLAST of Short coiled-coil protein homolog vs. Ensembl Medaka
Match: scocb (short coiled-coil protein [Source:NCBI gene;Acc:101156868]) HSP 1 Score: 97.4413 bits (241), Expect = 3.364e-26 Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 3 Query: 198 TDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRR 431 D ME ++EK +LI+Q++ELQHTLEDLS+RV+ VKEEN+KL+SENQ+L QY ENLMSASSVFQT K+ R+ Sbjct: 3 CDIDGDMENQVEMEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 80
BLAST of Short coiled-coil protein homolog vs. Planmine SMEST
Match: SMESG000029570.1 (SMESG000029570.1) HSP 1 Score: 230.72 bits (587), Expect = 2.988e-78 Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 3 Query: 87 METIPLSSDESDYDKPKNEIKMGSLNFSPDNQLINASTDNKNHMEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRRG 434 METIPLSSDESDYDKPKNEIKMGSLNFSPDNQLINASTDNKNH+EISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRRG Sbjct: 1 METIPLSSDESDYDKPKNEIKMGSLNFSPDNQLINASTDNKNHVEISDSIQEKQKLISQIIELQHTLEDLSSRVEVVKEENMKLRSENQILSQYNENLMSASSVFQTNSPKTNRRG 116 The following BLAST results are available for this feature:
BLAST of Short coiled-coil protein homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Short coiled-coil protein homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of Short coiled-coil protein homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Short coiled-coil protein homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of Short coiled-coil protein homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Short coiled-coil protein homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of Short coiled-coil protein homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Short coiled-coil protein homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Short coiled-coil protein homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of Short coiled-coil protein homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Short coiled-coil protein homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Short coiled-coil protein homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Short coiled-coil protein homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Short coiled-coil protein homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010576 ID=SMED30010576|Name=Short coiled-coil protein homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=672bpback to top protein sequence of SMED30010576-orf-1 >SMED30010576-orf-1 ID=SMED30010576-orf-1|Name=SMED30010576-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=117bp METIPLSSDESDYDKPKNEIKMGSLNFSPDNQLINASTDNKNHMEISDSIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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