FMRFamide-activated amiloride-sensitive sodium channel
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010573 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Match: delm-1 (DEgenerin Linked to Mechanosensation [Source:UniProtKB/TrEMBL;Acc:O45402]) HSP 1 Score: 55.4546 bits (132), Expect = 3.222e-9 Identity = 33/108 (30.56%), Postives = 56/108 (51.85%), Query Frame = 1 Query: 46 TIS-KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCY----QYLEYNVIHPPRIL-SDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDP 351 TIS K E FCE TT+ G RI K ++ + WL ++ +G + +I+ C+ YL ++ L ++ FPS+TVCN+ P++++ +E M + P Sbjct: 63 TISVKRETQHFCETTTMHGPKRIFKGKRIFTKLFWL----IMVLGSLGLLIYQCWILSASYLSKPIVSQVSFLIPEDGMEFPSVTVCNFTPIRKSYIEAMNRTGDVSP 166
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Match: delm-2 (DEgenerin Linked to Mechanosensation [Source:UniProtKB/TrEMBL;Acc:P91103]) HSP 1 Score: 46.9802 bits (110), Expect = 2.024e-6 Identity = 32/110 (29.09%), Postives = 52/110 (47.27%), Query Frame = 1 Query: 43 KTISKE-EFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLF----IGFMVC-IIFLCYQYLEYNVIHPPRILSDNKA-PFPSLTVCNYRPMKRNILEIMKKRNIKDP 351 +T+S E E FCE TT+ G RI + ++ W T F L+ IG ++ + L YL V+ L + + FP +T+CN+ P+++ + M K P Sbjct: 57 ETVSVERETQHFCETTTMHGPKRIFQGKR------WATLFWLIMVCTSIGLLITQVCILASNYLSKPVVSDVSFLINEEGIQFPQITICNFTPIRKTFVNEMNKTGQISP 160
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Match: unc-8 (Degenerin unc-8 [Source:UniProtKB/Swiss-Prot;Acc:Q21974]) HSP 1 Score: 45.8246 bits (107), Expect = 5.901e-6 Identity = 31/115 (26.96%), Postives = 54/115 (46.96%), Query Frame = 1 Query: 16 LDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREF 360 L S+ I T K + FC T+ G+P + S R++W F+ + + F++ + +YL+Y I + L A FP+ TVCN K + E+ + IK+ ++ Sbjct: 48 LRSQKIDYHTTTIKSLWFDFCARTSSHGIPYVATS-SFFGRYVWAALFMCMLMAFLLQTYWTMSEYLQYRTIIEMQ-LQFEAAAFPAATVCNLNAFKYS--ELTQYEEIKEGFDY 158
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Match: acd-1 (pep chromosome:WBcel235:I:4103713:4108045:1 gene:WBGene00016064.1 transcript:C24G7.2.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:acd-1) HSP 1 Score: 45.8246 bits (107), Expect = 5.974e-6 Identity = 30/106 (28.30%), Postives = 51/106 (48.11%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFI----GFMVCIIF-LCYQYLEYNVIHPPRIL-SDNKAPFPSLTVCNYRPMKRN-ILEIMKKRNIKDP 351 K E FCE TT+ G RI + ++ W T F L+ + G ++ +F L +YL + L +++ FP +T+CN P+++ + EI K + P Sbjct: 77 KRETQHFCETTTMHGPKRIFQGKR------WATLFWLIMVSCSLGLLITQVFILASEYLSKPTVSDVSFLINEDGMDFPLITICNLNPIRKTYVNEINKTGEVSPP 176
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Match: unc-8 (Degenerin unc-8 [Source:UniProtKB/Swiss-Prot;Acc:Q21974]) HSP 1 Score: 45.8246 bits (107), Expect = 6.413e-6 Identity = 31/115 (26.96%), Postives = 54/115 (46.96%), Query Frame = 1 Query: 16 LDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREF 360 L S+ I T K + FC T+ G+P + S R++W F+ + + F++ + +YL+Y I + L A FP+ TVCN K + E+ + IK+ ++ Sbjct: 88 LRSQKIDYHTTTIKSLWFDFCARTSSHGIPYVATS-SFFGRYVWAALFMCMLMAFLLQTYWTMSEYLQYRTIIEMQ-LQFEAAAFPAATVCNLNAFKYS--ELTQYEEIKEGFDY 198
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Match: cldn16 (claudin 16 [Source:Xenbase;Acc:XB-GENE-971823]) HSP 1 Score: 55.0694 bits (131), Expect = 1.051e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 19 DSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCY-QYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + E +I F + +E F FC NTT+ G R+V SR + ++ WL F+ F G M L + QY Y V + SD K PFP++TVC P + ++ Sbjct: 8 EKEPLIEFFSSYRELFEFFCSNTTIHGAIRLVCSRSNRMKTAFWLVLFLATF-GLMYWQFGLLFGQYFSYPVSINLNVNSD-KLPFPAVTVCTLNPYRYKAIQ 108
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Match: cldn16 (claudin 16 [Source:Xenbase;Acc:XB-GENE-971823]) HSP 1 Score: 52.7582 bits (125), Expect = 5.507e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 19 DSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCY-QYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + E +I F + +E F FC NTT+ G R+V SR + ++ WL F+ F G M L + QY Y V + SD K PFP++TVC P + ++ Sbjct: 12 EKEPLIEFFSSYRELFEFFCSNTTIHGAIRLVCSRSNRMKTAFWLVLFLATF-GLMYWQFGLLFGQYFSYPVSINLNVNSD-KLPFPAVTVCTLNPYRYKAIQ 112
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Match: cldn16 (claudin 16 [Source:Xenbase;Acc:XB-GENE-971823]) HSP 1 Score: 52.7582 bits (125), Expect = 5.899e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 19 DSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCY-QYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + E +I F + +E F FC NTT+ G R+V SR + ++ WL F+ F G M L + QY Y V + SD K PFP++TVC P + ++ Sbjct: 8 EKEPLIEFFSSYRELFEFFCSNTTIHGAIRLVCSRSNRMKTAFWLVLFLATF-GLMYWQFGLLFGQYFSYPVSINLNVNSD-KLPFPAVTVCTLNPYRYKAIQ 108
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Match: cldn16 (claudin 16 [Source:Xenbase;Acc:XB-GENE-971823]) HSP 1 Score: 52.373 bits (124), Expect = 6.765e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 19 DSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCY-QYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + E +I F + +E F FC NTT+ G R+V SR + ++ WL F+ F G M L + QY Y V + SD K PFP++TVC P + ++ Sbjct: 8 EKEPLIEFFSSYRELFEFFCSNTTIHGAIRLVCSRSNRMKTAFWLVLFLATF-GLMYWQFGLLFGQYFSYPVSINLNVNSD-KLPFPAVTVCTLNPYRYKAIQ 108
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Match: cldn16 (claudin 16 [Source:Xenbase;Acc:XB-GENE-971823]) HSP 1 Score: 52.373 bits (124), Expect = 6.842e-8 Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 19 DSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCY-QYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + E +I F + +E F FC NTT+ G R+V SR + ++ WL F+ F G M L + QY Y V + SD K PFP++TVC P + ++ Sbjct: 8 EKEPLIEFFSSYRELFEFFCSNTTIHGAIRLVCSRSNRMKTAFWLVLFLATF-GLMYWQFGLLFGQYFSYPVSINLNVNSD-KLPFPAVTVCTLNPYRYKAIQ 108
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Mouse
Match: Scnn1a (sodium channel, nonvoltage-gated 1 alpha [Source:MGI Symbol;Acc:MGI:101782]) HSP 1 Score: 45.8246 bits (107), Expect = 2.606e-6 Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 1 Query: 4 EPSELDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRH-----LWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMK 306 +P+E + E +I F +E F FC NTT+ G R+V S+ + ++ LWL F +++ F + L +Y Y V + SD K FP++TVC P + Sbjct: 24 QPTE-EEEALIEFHRSYRELFQFFCNNTTIHGAIRLVCSKHNRMKTAFWAVLWLCTFGMMYWQFAL----LFEEYFSYPVSLNINLNSD-KLVFPAVTVCTLNPYR 123
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. UniProt/SwissProt
Match: sp|P51167|SCNNA_XENLA (Amiloride-sensitive sodium channel subunit alpha OS=Xenopus laevis OX=8355 GN=scnn1a PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 3.663e-8 Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1 Query: 19 DSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCY-QYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + E +I F + +E F FC NTT+ G R+V SR++ ++ WL F++ F G M L + QY Y V + SD K PFP++TVC P + ++ Sbjct: 8 EKEALIEFFSSYRELFEFFCSNTTIHGAIRLVCSRRNRMKTAFWLVLFLVTF-GLMYWQFGLLFGQYFSYPVSINLNVNSD-KLPFPAVTVCTLNPYRYKAIQ 108
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. UniProt/SwissProt
Match: sp|O97741|SCNNA_RABIT (Amiloride-sensitive sodium channel subunit alpha OS=Oryctolagus cuniculus OX=9986 GN=SCNN1A PE=2 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 8.955e-6 Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = 1 Query: 4 EPSELDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRH-----LWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMK 306 +P+E D E +I F +E F FC NTT+ G R+V S+ + ++ LWL F +++ F + L +Y Y V + SD K FP++TVC P + Sbjct: 20 QPTE-DEEALIEFHRSYRELFQFFCNNTTIHGAIRLVCSKHNRMKTAFWAVLWLCTFGMMYWQFGL----LFGEYFSYPVNLNINLNSD-KLVFPAVTVCTLNPYR 119
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A448WUF1 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS13975 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.324e-44 Identity = 78/158 (49.37%), Postives = 108/158 (68.35%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYC 528 + E L+FC+NTT+RGVPRIVK+R ++ LW+ F +LLF G VC+ FL QYL Y+VIHPPR+L D+ +PFPS+T+CN RP+ +E + + +K PR FA +N A +YY +NL + YQ +S ++MG YLES+P + LGH D IIYC Sbjct: 15 RYELLQFCQNTTIRGVPRIVKARNKTLQTLWIVFEVLLFFGCFVCMFFLARQYLAYDVIHPPRVLRDSPSPFPSITICNLRPISSKGIENLSMQRLKVPRTFAEDVNAAAAYFYYHRNLKEKYQYVTSALSMGGYLESLPEGVASTLGHSLNDTIIYC 172
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A448WAD7 (Uncharacterized protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS383 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 9.963e-43 Identity = 78/167 (46.71%), Postives = 111/167 (66.47%), Query Frame = 1 Query: 31 IINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYCQ 531 ++ F + EF FCENTT+RGVPRI K++ I LWLTF +LLF+G VC+ FL QYLEY+VIHPPR+L D +PFP+LT CN RP+K +++ +DPR+F+ +N+YA + +K N +YQR S ++MG+YL S+ + + E+GH + II CQ Sbjct: 159 LLRFCARVRREFRVFCENTTIRGVPRIAKAKSKPILSLWLTFVLLLFVGLFVCMFFLARQYLEYDVIHPPRVLRDANSPFPALTFCNLRPLKPAAKTFIQRSGWRDPRQFSQRLNEYAGELLFKANRKPDYQRMSVAISMGSYLASLGEQYYQEMGHTLNESIIQCQ 325
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A0R3X1H7 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS7043 PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 4.155e-42 Identity = 75/158 (47.47%), Postives = 108/158 (68.35%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYC 528 K+EFLRFC+ TT+RGV RIV S IR LWLTF I L+IG C+I L QY +Y+VIHPPR+L D +PFPSLT+CN RP+ ++ +++ +DPR+FA ++N++A Y+ +N +Y+ SS ++MG YLES+P + LGH + + +I C Sbjct: 14 KQEFLRFCQTTTIRGVSRIVNSPNKGIRSLWLTFVISLYIGLFTCMIILASQYFDYDVIHPPRVLRDTPSPFPSLTLCNLRPLSPPGIKRIRQLQFRDPRDFAKNLNEFAAGLYFYRNRSHDYELVSSAISMGGYLESLPKGSSYSLGHLQNETVIQC 171
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: W6UN59 (FMRFamide-activated amiloride-sensitive sodium channel OS=Echinococcus granulosus OX=6210 GN=EGR_05521 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 7.601e-42 Identity = 76/158 (48.10%), Postives = 109/158 (68.99%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYC 528 K+EFLRFC+ TT+RGV RIV SR IR LWLTF I L+IG C+I L QY +Y+VIHPPR+L D +PFPSLT+CN RP+ ++ +++ +DPR+FA ++N++A Y+ +N +Y+ SS ++MG YLES+P + LGH + + +I C Sbjct: 14 KQEFLRFCQTTTIRGVSRIVNSRNKGIRSLWLTFVICLYIGLFTCMILLASQYFDYDVIHPPRVLRDTPSPFPSLTLCNLRPLSPPGMKRIRQLQFRDPRDFAKNLNEFAAGLYFYRNRSHDYELVSSAISMGGYLESLPKGSSYSLGHLQNETVIQC 171
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Match: A0A183VLR9 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS1425 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 9.003e-42 Identity = 74/158 (46.84%), Postives = 104/158 (65.82%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYC 528 K+E L FC+ TT+RGV R+V +R ++ LW+ IL F G VC+ L QYLEYNVIHPP++L D +PFPSLT+CN RP+ I++K +K PR+FA +N +A K YY N +YQ+ +S ++MG YLES+P +LGH+ D +I+C Sbjct: 21 KKELLYFCQTTTIRGVTRVVNARNQTLQSLWIGSVILFFGGLFVCMFILTRQYLEYNVIHPPQVLRDTLSPFPSLTLCNLRPLSSEAKSILEKYKLKSPRQFATDVNNFAAKAYYYNNEEHSYQQVTSAISMGGYLESLPKSVVPKLGHNLSDTVIHC 178
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Sea Lamprey
Match: SCNN1A (sodium channel epithelial 1 alpha subunit [Source:HGNC Symbol;Acc:HGNC:10599]) HSP 1 Score: 46.9802 bits (110), Expect = 7.473e-7 Identity = 26/98 (26.53%), Postives = 49/98 (50.00%), Query Frame = 1 Query: 31 IINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIR-HLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILE 321 + +F E F FC+NTT+ G R+V S+++ ++ W F + I F + QY Y V ++ ++ FP++TVC+ P + +++ Sbjct: 12 VTDFYDSYDEMFEFFCDNTTIHGTIRLVCSKRNKLKTAFWSLLFTVTVILFYYTSALVFLQYYSYTVAVTMGLMF-QQSTFPAITVCSLNPYRYEVVQ 108
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000044381.1 (SMESG000044381.1) HSP 1 Score: 325.094 bits (832), Expect = 1.494e-109 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 Query: 1 MEPSELDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYCQ 531 MEPSELDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSINKYAIKYYYKKNLGKNYQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYCQ Sbjct: 1 MEPSELDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSINKYAIKYYYKKNLGKNYQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYCQ 177
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000028687.1 (SMESG000028687.1) HSP 1 Score: 192.971 bits (489), Expect = 1.395e-58 Identity = 101/163 (61.96%), Postives = 128/163 (78.53%), Query Frame = 1 Query: 43 KTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYCQ 531 + + KEEFLRFCENTT+RGVP+I+KS+ +R++W+T FILL GF VC IFL QY Y+VIHPPRIL++++APFPS TVCN RP+ RNI I K +N+K PREFA ++N YAIKY+Y KN Y ASSIM MG YLESVPN+++ ELGH +QDLII+C+ Sbjct: 39 RQVIKEEFLRFCENTTIRGVPKIIKSKHKPLRYMWMTCFILLLSGFSVCFIFLLKQYFAYDVIHPPRILTNSQAPFPSFTVCNLRPLARNIDTIFKLKNLKTPREFAKNVNNYAIKYFYNKNNLTLYGHASSIMLMGGYLESVPNKSYVELGHKKQDLIIHCR 201
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000078360.1 (SMESG000078360.1) HSP 1 Score: 152.14 bits (383), Expect = 4.458e-43 Identity = 74/159 (46.54%), Postives = 113/159 (71.07%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXX-XXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYC 528 K E + FC+NTT+RG+PRI+K++ ++R LW+TF ++LFIG ++ ++FL QYLEYNVIHPP IL D + PFPS+++CN RP+ R LE +KK N ++PREF +++N Y YY ++ Y + ++ ++M YLESVP ++LGH +L+I+C Sbjct: 77 KHELIAFCQNTTMRGIPRIIKAQSRNLRILWITFVVILFIGLLLSMLFLTKQYLEYNVIHPPVILPDQEPPFPSISLCNLRPLSRFGLEFLKKNNWRNPREFGNNLNVYVANKWYYNQSTKHYYTQFTTAISMNGYLESVPFDVLDKLGHSLDELVIHC 235
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000069611.1 (SMESG000069611.1) HSP 1 Score: 151.369 bits (381), Expect = 4.970e-43 Identity = 77/176 (43.75%), Postives = 113/176 (64.20%), Query Frame = 1 Query: 10 SELDSEIIIN---FKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRTFNELGHDEQDLIIYC 528 +++ E I+N FK + K E L FC+NTT+RGVPRIV + + LW++FFI L G +C+ FL Q++EY+VIHPPR+L ++ +PFPS TVCN+RP+ NI +RN+++PREFA + N + KY + + +Y +S ++ YLES+P N LGHD D +I C Sbjct: 34 NQIQEEAILNSPTFKKLLKNELLHFCKNTTIRGVPRIVNTTNKSSKILWISFFIFLCAGLTICLTFLIRQFIEYSVIHPPRVLQNSPSPFPSFTVCNHRPLSYNISSFFNQRNMRNPREFAIAANYVSKKYLFDRGDKGHYSLITSSFSLSGYLESIPLEYHNMLGHDYYDFVIDC 209
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Match: SMESG000037525.1 (SMESG000037525.1) HSP 1 Score: 145.976 bits (367), Expect = 3.779e-41 Identity = 82/160 (51.25%), Postives = 116/160 (72.50%), Query Frame = 1 Query: 55 KEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLTFFILLFIGFMVCIIFLCYQYLEYNVIHPPRILSDNKAPFPSLTVCNYRPMKRNILEIMKKRNIKDPREFAHSXXXXXXXXXXXXXXXXXXQRASSIMNMGAYLESVPNRT-FNELGHDEQDLIIYCQ 531 K+EFL FC+NTT+RGV RIVKS I LWL FFI+L IG +VC+I L QYL+YNVIHPPR+LS+ ++PFPS T+CN RP+ ++ + +++PREFA +N+YA+ Y KKN +Y +++I +MG YLES+PN + F ELGH +++I+C+ Sbjct: 71 KKEFLLFCQNTTIRGVSRIVKSTDKKIFFLWLGFFIILCIGLLVCMILLLLQYLDYNVIHPPRVLSNKESPFPSFTICNLRPLSPDVRSFLANEKLRNPREFASRLNQYAVSRYLKKNDSFHYAASTAISSMGGYLESMPNTSYFKELGHGLDEMVIFCK 230 The following BLAST results are available for this feature:
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 2
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of FMRFamide-activated amiloride-sensitive sodium channel vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010573 ID=SMED30010573|Name=FMRFamide-activated amiloride-sensitive sodium channel|organism=Schmidtea mediterranea sexual|type=transcript|length=531bpback to top protein sequence of SMED30010573-orf-1 >SMED30010573-orf-1 ID=SMED30010573-orf-1|Name=SMED30010573-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=177bp MEPSELDSEIIINFKTISKEEFLRFCENTTLRGVPRIVKSRKSHIRHLWLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|