Ribosomal protein S2

Overview
NameRibosomal protein S2
Smed IDSMED30010466
Length (bp)871
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribosomal protein S2 (SMED30010466) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribosomal protein S2 (SMED30010466) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribosomal protein S2 (SMED30010466) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribosomal protein S2 (SMED30010466) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010466

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30010466h1SMcG0018348 SmedASXL_008176SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30010466h1SMcG0018348 Contig54333uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010466h1SMcG0018348 Contig54333newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neoblastSMED30010466h1SMcG0018348 dd_Smed_v4_3836_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior sideSMED30010466h1SMcG0018348 dd_Smed_v4_3836_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
posterior muscle cellSMED30010466h1SMcG0018348 dd_Smed_v4_3836_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Human
Match: MRPS2 (mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495])

HSP 1 Score: 214.927 bits (546), Expect = 5.280e-68
Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            +PL   D+F V+ L +V  LF  R HLGHK   R+ +M PY+FG+R   DI DL +T   L  ALNF AH++YR GIILFISR+ Q   L+E +A++CGEY+H R +  G  T+   ++G   RLPD +IFLH  N +F  H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS   + L+  LFQ AI R KEK+
Sbjct:   65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKR 264
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Human
Match: MRPS2 (mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495])

HSP 1 Score: 214.927 bits (546), Expect = 5.280e-68
Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            +PL   D+F V+ L +V  LF  R HLGHK   R+ +M PY+FG+R   DI DL +T   L  ALNF AH++YR GIILFISR+ Q   L+E +A++CGEY+H R +  G  T+   ++G   RLPD +IFLH  N +F  H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS   + L+  LFQ AI R KEK+
Sbjct:   65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKR 264
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Human
Match: MRPS2 (mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495])

HSP 1 Score: 203.371 bits (516), Expect = 5.953e-64
Identity = 100/192 (52.08%), Postives = 130/192 (67.71%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEA 701
            +PL   D+F V+ L +V  LF  R HLGHK   R+ +M PY+FG+R   DI DL +T   L  ALNF AH++YR GIILFISR+ Q   L+E +A++CGEY+H R +  G  T+   ++G   RLPD +IFLH  N +F  H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS   + L+  LFQ A
Sbjct:   79 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTA 270
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Celegans
Match: mrps-2 (Mitochondrial Ribosomal Protein, Small [Source:UniProtKB/TrEMBL;Acc:O17004])

HSP 1 Score: 177.178 bits (448), Expect = 3.731e-54
Identity = 85/194 (43.81%), Postives = 121/194 (62.37%), Query Frame = 3 
Query:  144 DYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            D F    + +++++F  R H GHK    N  M   L+G R G+ +FDL+ T K L  ALNFVAHVS RGG+ILF++ +  T+  VEK A E G+YSH R W SG  T+   + G   RLPD V FL    ++   H A+ +AAK+ IPT+ +VDSN DP  +TY +P NDD+  +    L +F+EA+R+G+E++
Sbjct:   64 DLFNFEKMVHIDEMFKARLHYGHKVGTVNNNMKWALYGERLGVCLFDLDITKKYLVRALNFVAHVSLRGGMILFVTSNRDTMFDVEKAADEVGQYSHVRKWQSGTLTNTRQLLGASVRLPDAVCFLSTLTSLGENHPAIVEAAKMAIPTIGVVDSNSDPAYLTYLVPANDDTPQSTEYLLRMFKEAVRKGQEER 257
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Celegans
Match: mrps-2 (Mitochondrial Ribosomal Protein, Small [Source:UniProtKB/TrEMBL;Acc:O17004])

HSP 1 Score: 177.178 bits (448), Expect = 3.731e-54
Identity = 85/194 (43.81%), Postives = 121/194 (62.37%), Query Frame = 3 
Query:  144 DYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            D F    + +++++F  R H GHK    N  M   L+G R G+ +FDL+ T K L  ALNFVAHVS RGG+ILF++ +  T+  VEK A E G+YSH R W SG  T+   + G   RLPD V FL    ++   H A+ +AAK+ IPT+ +VDSN DP  +TY +P NDD+  +    L +F+EA+R+G+E++
Sbjct:   64 DLFNFEKMVHIDEMFKARLHYGHKVGTVNNNMKWALYGERLGVCLFDLDITKKYLVRALNFVAHVSLRGGMILFVTSNRDTMFDVEKAADEVGQYSHVRKWQSGTLTNTRQLLGASVRLPDAVCFLSTLTSLGENHPAIVEAAKMAIPTIGVVDSNSDPAYLTYLVPANDDTPQSTEYLLRMFKEAVRKGQEER 257
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Fly
Match: mRpS2 (gene:FBgn0031639 transcript:FBtr0077408)

HSP 1 Score: 220.32 bits (560), Expect = 5.584e-71
Identity = 118/245 (48.16%), Postives = 151/245 (61.63%), Query Frame = 3 
Query:   21 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDP----------LSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            MLR+ F+NL  F Q  +      L S   +   + +P          L   DYF V NL  V DLF+ R H GHKE   +  M PYLFG+R G  IFDL+KT   L +ALNF AH+++R GIILF +R+     LVE+ A+E GE+SH R W  G FT+    +  VTRLPD  IFL+  N V  +H AVRDAAK+ IPT+ IVDSNC+P +ITYP+PGNDDS   + L+  LF+EAI RGK ++
Sbjct:    1 MLRKSFANLPRFGQ--MCGLPRRLQSTQPEQSVETEPEDIALVEQRILKHPDYFQVHNLFTVRDLFNARVHYGHKEGSLDDRMRPYLFGSRLGHLIFDLDKTASHLRDALNFAAHIAFRDGIILFFNRNAMNSHLVERKAQEAGEFSHTRFWRGGIFTNANVQFDAVTRLPDLCIFLNTQNNVMAQHTAVRDAAKMAIPTIGIVDSNCNPNLITYPVPGNDDSPAAVELYCNLFKEAILRGKRER 243
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Zebrafish
Match: mrps2 (mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992])

HSP 1 Score: 213.772 bits (543), Expect = 2.832e-68
Identity = 100/199 (50.25%), Postives = 134/199 (67.34%), Query Frame = 3 
Query:  129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            PL+  DYF +  L +++DLF  R HLGHK+  R+  M PYLFG R  +DI DL +T+  L  ALNF AHV++RGG++LF+SR  Q   LVE  A++CGEY+H R W  G  T+    Y    RLPD ++FL   N VF EH  +RDAAK+ IPTV IVDSNC+P +I+YP+PGNDD+   + L+  LF+  I+R K+K+
Sbjct:   57 PLTQPDYFHLSELFSMKDLFDARVHLGHKKGCRHALMEPYLFGCRLDMDIIDLEQTVDHLQRALNFTAHVAFRGGVVLFVSRRRQFAHLVETTARDCGEYAHTRYWKGGLLTNAPIQYNPGVRLPDLIVFLSTLNNVFQEHVGIRDAAKMNIPTVGIVDSNCNPSLISYPVPGNDDTPAAMELYCRLFKMTIKRAKDKR 255
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Mouse
Match: Mrps2 (mitochondrial ribosomal protein S2 [Source:MGI Symbol;Acc:MGI:2153089])

HSP 1 Score: 216.468 bits (550), Expect = 6.080e-69
Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 3 
Query:  129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            PL   D+F V+ L +V+ LF  R HLGHK   R+ +M PY+FGNR G DI DL++T   L  ALNF AHV+YR GIILF+SR+ Q   L+E  A+ CGEY+H R +  G  T+ + ++G   RLPD +IFLH  N VF  H AVRDAAK+ IPTV IVD+NC+P +ITYPIPGNDDS   I+L+  LF+  I R KEK+
Sbjct:   63 PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKR 261
[Close]
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|P82923|RT02_BOVIN (28S ribosomal protein S2, mitochondrial OS=Bos taurus OX=9913 GN=MRPS2 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.286e-68
Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            +PL   D+F V+ L +V  LF+ R HLGHK   R+ +M PY+FG+R G DI DL +T   L  ALNF AHV++RGGIILF+SR  Q   L+E  A+ CGEY+H R +  G  T+   + G   RLPD +IFLH  N VF  H AVRDAAK+ IPTV +VD+NC+P +ITYP+PGNDDS   ++L+  LFQ A+ R KEK+
Sbjct:   54 EPLKHSDFFNVKELFSVRSLFNARVHLGHKAGCRHRFMEPYIFGSRLGQDIIDLEQTATHLQLALNFTAHVAFRGGIILFVSRARQFSHLIESTARSCGEYAHTRYFKGGLLTNAPLLLGARVRLPDLIIFLHTLNNVFEPHVAVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPAVQLFCQLFQTAVTRAKEKR 253
[Close]
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|Q924T2|RT02_MOUSE (28S ribosomal protein S2, mitochondrial OS=Mus musculus OX=10090 GN=Mrps2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.253e-68
Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 3 
Query:  129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            PL   D+F V+ L +V+ LF  R HLGHK   R+ +M PY+FGNR G DI DL++T   L  ALNF AHV+YR GIILF+SR+ Q   L+E  A+ CGEY+H R +  G  T+ + ++G   RLPD +IFLH  N VF  H AVRDAAK+ IPTV IVD+NC+P +ITYPIPGNDDS   I+L+  LF+  I R KEK+
Sbjct:   63 PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKR 261
[Close]
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|Q9Y399|RT02_HUMAN (28S ribosomal protein S2, mitochondrial OS=Homo sapiens OX=9606 GN=MRPS2 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.536e-67
Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            +PL   D+F V+ L +V  LF  R HLGHK   R+ +M PY+FG+R   DI DL +T   L  ALNF AH++YR GIILFISR+ Q   L+E +A++CGEY+H R +  G  T+   ++G   RLPD +IFLH  N +F  H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS   + L+  LFQ AI R KEK+
Sbjct:   65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKR 264
[Close]
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|A8F0I9|RS2_RICM5 (30S ribosomal protein S2 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rpsB PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 4.462e-33
Identity = 71/237 (29.96%), Postives = 115/237 (48.52%), Query Frame = 3 
Query:  168 CNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRL--------------------------------------------PDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEK--QGSKVD 740
             N+++L     H GHK S  NP M  Y++G R  + I DL +++ L+  ALN +     + G ILF+S  +Q   ++ + A++CG+Y     W+ G  T+ + + G + +L                                            PD ++ +  +     EH A+ +A KL +P VA+VD+N +P  + YPIPGNDDSI +IRL+ +LF +A  +G E+  + S VD
Sbjct:    7 VNIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKKDGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLENEEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDTNK----EHIAINEAVKLNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQGLEESMKASGVD 239
[Close]
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|O67809|RS2_AQUAE (30S ribosomal protein S2 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.461e-33
Identity = 74/232 (31.90%), Postives = 112/232 (48.28%), Query Frame = 3 
Query:  165 LCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVV-------------------------------------------TRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGS 731
            + ++++L     H GH +S  NP M PY++G R GI I DLNKTI +L +A +FV+ V  +GG ILF+    Q   ++++ A+ CG +     W+ G  T+ + V   +                                            +LPD +  +        E  AV +A KL IP VAI DSNCDP +I Y IPGNDD+I +I+L  +   +A+  GK+++ S
Sbjct:    3 VVSMKELLEAGVHFGHSKSRWNPKMAPYIYGVRHGIHIIDLNKTIVMLEDAYHFVSDVIAQGGEILFVGTKKQAKDIIKEEAERCGAFYVNERWVGGLLTNFQTVRKSIMKLQTLERMEEDGIFDVLPKKEVRNLRRKMEKLRKLYNGIRDMKKLPDVIWIVDT----VREKIAVSEARKLGIPIVAIADSNCDPTVIDYTIPGNDDAIKSIKLLTSKIADAVLEGKQRRES 230
[Close]
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A0R3VVR2 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS1489 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 2.377e-90
Identity = 127/197 (64.47%), Postives = 153/197 (77.66%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGK 716
            DPL T DYFG+R++ +VE LF+ RA+LGH+  +RNPYM PYLFG RQGIDIFDL +T +LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK  GEYS+CRPW  G FTD  N YG  TRLPD +I L+  N++  EH AVRDAAK+LIPTV IVDSNCDPR++TYP+PGNDDS  TIR W +LF EAI   K
Sbjct:    3 DPLQTPDYFGLRDMVSVEQLFNVRAYLGHRSMLRNPYMTPYLFGTRQGIDIFDLEQTAQLLFDALNFTAHIAYRGGIILFMIQHRQMMHLVEKTAKMVGEYSYCRPWGGGVFTDSTNFYGATTRLPDLIIMLNTMNSLGFEHVAVRDAAKMLIPTVGIVDSNCDPRLVTYPVPGNDDSPVTIRHWCSLFAEAIMLAK 199
[Close]
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: R7TVE8 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_21914 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 7.906e-90
Identity = 128/209 (61.24%), Postives = 162/209 (77.51%), Query Frame = 3 
Query:   99 EVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            E TQ+   ++PL   DYF V+ L    DLF+ R HLGHK   RNPYM+PY+FGNR G+DI DL++T +L+ EALNF+AHV+YR GIILFISRHL TIPLVEK A+ECGEYSHCR W++G  T+    +G VTRLPD  IFL   +TVF +HAAV +AAK+ IP+VA+VDS CDPR+ITYPIPGNDD+ C + L+L LF+EAI +GK+++
Sbjct:   32 ESTQT--SINPLEHDDYFDVKRLTKKIDLFNNRVHLGHKVGTRNPYMLPYIFGNRLGVDILDLDQTHELMKEALNFIAHVAYRDGIILFISRHLHTIPLVEKAAEECGEYSHCRQWMTGTLTNSSVKFGAVTRLPDLCIFLSTQDTVFEQHAAVIEAAKMYIPSVAVVDSACDPRLITYPIPGNDDTPCAVELYLKLFKEAILKGKQQR 238
[Close]
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A0R3X6S3 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS9206 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.634e-89
Identity = 128/203 (63.05%), Postives = 154/203 (75.86%), Query Frame = 3 
Query:  108 QSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGK 716
             S   +DPL + DYFG+R++ +VE LF+ RAHLGH+  +RNPYM PYLFG+RQGIDIFDL +T +LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK  GEYS+CRPW  G FTD  N YG  TRLPD +I L+  N V  +H AVRDAAK+LIPTV IVDSNCDPR+ITYP+PGNDDS  TIR W  LF E+I   K
Sbjct:   26 SSPVMIDPLQSPDYFGLRDIVSVEQLFNARAHLGHRSLLRNPYMTPYLFGSRQGIDIFDLEQTAELLFDALNFTAHIAYRGGIILFMIQHRQMMHLVEKTAKAVGEYSYCRPWGGGVFTDSTNFYGATTRLPDLIIMLNTVNPVGFDHVAVRDAAKMLIPTVGIVDSNCDPRLITYPVPGNDDSPVTIRHWCGLFAESIAHAK 228
[Close]
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A0R3UFY4 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6077 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 9.152e-89
Identity = 125/204 (61.27%), Postives = 153/204 (75.00%), Query Frame = 3 
Query:  111 SCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEK 722
            S +  +PL + DYFG+R++ +VE LF  RAHLGH+  +RNPYM PYLFG RQGIDIFDL +T++LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK  GEYS+CRPW  G FTD  N +G  TRLPD +I L+    +   H AVRDAAK+LIPTV IVDSNCDPR+ITYP+PGNDDS  TIR W  LF EA+  GK +
Sbjct:   31 SAKMNNPLESPDYFGLRHVISVEQLFKVRAHLGHRSMLRNPYMTPYLFGTRQGIDIFDLEQTVELLFDALNFTAHIAYRGGIILFMIQHRQMMQLVEKTAKMVGEYSYCRPWGGGVFTDSSNFFGSTTRLPDLIIMLNTVTPIGSGHVAVRDAAKMLIPTVGIVDSNCDPRLITYPVPGNDDSPVTIRYWCGLFAEAVAHGKRR 234
[Close]
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A068WFJ0 (28S ribosomal protein S2 mitochondrial OS=Echinococcus granulosus OX=6210 GN=EgrG_000631300 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 1.090e-88
Identity = 131/221 (59.28%), Postives = 157/221 (71.04%), Query Frame = 3 
Query:   69 LKLFNADLHSEVTQSCEQV-----DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGK 716
            L L   +L S +  S         DPL + DYFG+R++ +VE LF  RAHLGH+  +RNPYM PYLFG RQGIDIFDL +T +LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK  GEYS+CRPW  G FTD  N +G  TRLPD +I L+  N V  +H AVRDAAK+LIPTV IVDSNCDPR++TYP+PGNDDS  TIR W  LF EAI   K
Sbjct:   12 LALLRRNLLSTIASSSSHTSPAMPDPLQSPDYFGLRDVVSVEQLFKVRAHLGHRSMLRNPYMTPYLFGTRQGIDIFDLEQTAELLFDALNFTAHIAYRGGIILFMIQHRQMMHLVEKTAKMIGEYSYCRPWGGGVFTDSTNFFGATTRLPDLIIMLNTVNPVGFDHVAVRDAAKMLIPTVGIVDSNCDPRLVTYPVPGNDDSPVTIRHWCGLFAEAIAHAK 232
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Cavefish
Match: mrps2 (28S ribosomal protein S2, mitochondrial-like [Source:NCBI gene;Acc:111188469])

HSP 1 Score: 214.927 bits (546), Expect = 9.194e-69
Identity = 100/199 (50.25%), Postives = 134/199 (67.34%), Query Frame = 3 
Query:  129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            PL+  D+F +  L  ++DLF  R HLGHK+  R+  M PYLFG+R  +DI DL++T+  L  ALNF AHV+YRGGI+LF+SR  Q   LVE+ A+ CGEY+H R W  G  T+    YG   RLPD +IFL   N VF  H  +RDAAK+ IPT+ +VDSNC+P ++TYP+PGNDD+  ++ L+  LF+  I R K K+
Sbjct:   60 PLTQPDFFNLSELFTMKDLFEARVHLGHKKGCRHRLMEPYLFGSRLDVDIIDLDQTMDHLQRALNFTAHVAYRGGIVLFVSRRRQFAHLVERTAQGCGEYAHTRYWQGGLLTNAPVQYGAGVRLPDLIIFLSTLNNVFQTHVGLRDAAKMNIPTIGVVDSNCNPSLVTYPVPGNDDTPISMELYCRLFKMTINRAKGKR 258
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Cavefish
Match: ENSAMXT00000055095.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:28897452:28901616:1 gene:ENSAMXG00000030887.1 transcript:ENSAMXT00000055095.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.0922 bits (170), Expect = 5.010e-14
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 3 
Query:  480 YGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSN-CDPRI-----ITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            YG   RLPD +IFL   N VF  H  +RDAAK+ IPT+ +VDS   +P +     + +  PGNDD+  ++ L+  LF+  I R K K+
Sbjct:  101 YGAGVRLPDLIIFLSTLNNVFQTHVGLRDAAKMNIPTIGVVDSQPANPSLSLRTRVFFWAPGNDDTPISMELYCRLFKMTINRAKGKR 188
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Sea Lamprey
Match: mrps2 (mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992])

HSP 1 Score: 206.453 bits (524), Expect = 1.218e-66
Identity = 102/203 (50.25%), Postives = 133/203 (65.52%), Query Frame = 3 
Query:  126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVY---GVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            +PL   D+F V  L ++ DLF+ R HLGHK   RN YM PY++G R G DI DL++T++ L  ALNF AHV+YRGG +LF++R  Q + LVE+ A+ CGE        +G   D        GV  RLPD ++FL   N  F +H AVRDAAKL +PTV IVDSNCDP I+T+P+PGNDDS   +RL+ ALF+  I R KE++
Sbjct:   10 EPLKHPDFFRVSELVSLRDLFTARVHLGHKRGCRNRYMTPYIYGCRLGQDIIDLDQTLEHLVSALNFTAHVAYRGGAVLFVTRARQHVHLVEETARACGELDG-----AGAGRDVRRAVARAGVGVRLPDLLVFLGTQNNAFEQHVAVRDAAKLSVPTVGIVDSNCDPSIVTFPVPGNDDSPSAVRLYCALFRATITRAKERR 207
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Yeast
Match: MRP4 (Mitochondrial ribosomal protein of the small subunit [Source:SGD;Acc:S000000996])

HSP 1 Score: 107.842 bits (268), Expect = 2.471e-27
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 3 
Query:  174 VEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFI-SRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRL-----------------------PDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRG 713
            VE L S   HLG   S+       Y++G  +GI I DLN+T+  L  A   V  VS  GGIILF+ +R  Q   L E   K  G Y   R WI G  T+   + G+  +                        PD ++ L+          A+ +A K  +PT+AI+D++ +P ++TYPIPGNDDS+ ++   L +   A +RG
Sbjct:  185 VESLMSAGVHLGQSTSLWRSSTQSYIYGEYKGIHIIDLNQTLSYLKRAAKVVEGVSESGGIILFLGTRQGQKRGLEEAAKKTHGYYVSTR-WIPGTLTNSTEISGIWEKQEIDSNDNPTERALSPNETSKQVKPDLLVVLNPTEN----RNALLEAIKSRVPTIAIIDTDSEPSLVTYPIPGNDDSLRSVNFLLGVLARAGQRG 383
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Nematostella
Match: EDO30794 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SZR8])

HSP 1 Score: 151.369 bits (381), Expect = 2.922e-45
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 3 
Query:  132 LSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVV-TR-LPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            L+  D+F V  L ++ DLF    H GH E   NP M PYL+G R+   I DLN+TIK    AL+ + H  YRGG +LFIS   Q   L + +A++ GEY   + W  G FT   N Y V+ TR LPD V+FLH   ++     AV++ A   IP++ IVDS+C+P +I YPIPGNDD    ++++  +F+ A+   KEK+
Sbjct:    1 LNQQDFFDVHQLVSLRDLFVAGVHYGHHEGCWNPLMKPYLYGTREHFHIIDLNQTIKHFRLALDVLCHTVYRGGKVLFISCKPQFEELTQSLARDSGEYFVTQRWRGGTFT---NSYMVLETRNLPDLVVFLHV-PSLGRNALAVKETAMCNIPSIGIVDSDCNPNLIMYPIPGNDDMPSAVQMYCRIFKSAVLTAKEKR 196
[Close]
BLAST of Ribosomal protein S2 vs. Ensembl Medaka
Match: mrps2 (mitochondrial ribosomal protein S2 [Source:NCBI gene;Acc:101160674])

HSP 1 Score: 214.542 bits (545), Expect = 1.288e-68
Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 3 
Query:  129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725
            PL   D+F V  L +++DLF  R HLGHK+  R+  M PYL+G R   DIFDL++T++ L  ALNF AH++YRGGIILF+SR  Q   LVE  AK+CGEY+H R W  G  T+    YG   RLPD +IFL   N VF +H  VRDAAK+ IPTV +VDSNC+P ++TYP+PGNDD+   + L+  LF+  I R K+K+
Sbjct:   54 PLEKPDFFRVAELFSLKDLFDARVHLGHKKGCRHRLMEPYLYGCRLDQDIFDLDQTVEHLQLALNFTAHIAYRGGIILFVSRRRQFGHLVESTAKDCGEYAHTRYWQGGLLTNANIQYGPGVRLPDLIIFLSTLNNVFQQHVGVRDAAKMNIPTVGVVDSNCNPCLVTYPVPGNDDTPVAMELYCRLFKMTINRAKDKR 252
[Close]
BLAST of Ribosomal protein S2 vs. Planmine SMEST
Match: SMESG000028845.1 (SMESG000028845.1)

HSP 1 Score: 500.745 bits (1288), Expect = 0.000e+0
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 3 
Query:   21 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD 740
            MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD
Sbjct:    1 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD 240
The following BLAST results are available for this feature:
BLAST of Ribosomal protein S2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
MRPS25.280e-6852.50mitochondrial ribosomal protein S2 [Source:HGNC Sy... [more]
MRPS25.280e-6852.50mitochondrial ribosomal protein S2 [Source:HGNC Sy... [more]
MRPS25.953e-6452.08mitochondrial ribosomal protein S2 [Source:HGNC Sy... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrps-23.731e-5443.81Mitochondrial Ribosomal Protein, Small [Source:Un... [more]
mrps-23.731e-5443.81Mitochondrial Ribosomal Protein, Small [Source:Un... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mRpS25.584e-7148.16gene:FBgn0031639 transcript:FBtr0077408[more]
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BLAST of Ribosomal protein S2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps22.832e-6850.25mitochondrial ribosomal protein S2 [Source:ZFIN;Ac... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Ribosomal protein S2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Mrps26.080e-6954.27mitochondrial ribosomal protein S2 [Source:MGI Sym... [more]
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BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P82923|RT02_BOVIN1.286e-6852.5028S ribosomal protein S2, mitochondrial OS=Bos tau... [more]
sp|Q924T2|RT02_MOUSE4.253e-6854.2728S ribosomal protein S2, mitochondrial OS=Mus mus... [more]
sp|Q9Y399|RT02_HUMAN2.536e-6752.5028S ribosomal protein S2, mitochondrial OS=Homo sa... [more]
sp|A8F0I9|RS2_RICM54.462e-3329.9630S ribosomal protein S2 OS=Rickettsia massiliae (... [more]
sp|O67809|RS2_AQUAE6.461e-3331.9030S ribosomal protein S2 OS=Aquifex aeolicus (stra... [more]
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BLAST of Ribosomal protein S2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R3VVR22.377e-9064.47Uncharacterized protein OS=Taenia asiatica OX=6051... [more]
R7TVE87.906e-9061.24Uncharacterized protein OS=Capitella teleta OX=283... [more]
A0A0R3X6S32.634e-8963.05Uncharacterized protein OS=Hydatigena taeniaeformi... [more]
A0A0R3UFY49.152e-8961.27Uncharacterized protein OS=Mesocestoides corti OX=... [more]
A0A068WFJ01.090e-8859.2828S ribosomal protein S2 mitochondrial OS=Echinoco... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrps29.194e-6950.2528S ribosomal protein S2, mitochondrial-like [Sour... [more]
ENSAMXT00000055095.15.010e-1442.05pep primary_assembly:Astyanax_mexicanus-2.0:14:288... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps21.218e-6650.25mitochondrial ribosomal protein S2 [Source:ZFIN;Ac... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
MRP42.471e-2732.84Mitochondrial ribosomal protein of the small subun... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO307942.922e-4542.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Ribosomal protein S2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps21.288e-6852.26mitochondrial ribosomal protein S2 [Source:NCBI ge... [more]
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BLAST of Ribosomal protein S2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000028845.10.000e+0100.00SMESG000028845.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010466 ID=SMED30010466|Name=Ribosomal protein S2|organism=Schmidtea mediterranea sexual|type=transcript|length=871bp
CTATATAAATCTTATATGTTATGCTGCGCCAGAAGTTTAGCAATTTATTT
TTTTTTAAACAAAATGTTCTAAAATTGTTTAATGCGGATTTACATTCTGA
GGTTACTCAATCTTGTGAGCAAGTTGATCCATTAAGTACTTATGATTACT
TTGGAGTGAGAAATTTATGCAATGTCGAGGATTTGTTTAGTTTTCGAGCT
CATCTTGGTCATAAAGAATCTGTGAGAAATCCTTATATGGTTCCTTATTT
ATTCGGAAATAGACAAGGAATTGATATTTTTGATTTAAATAAAACAATTA
AGTTATTAGGTGAAGCATTGAATTTTGTCGCCCATGTTTCATATCGTGGA
GGGATAATACTGTTTATATCTAGACATCTTCAAACTATTCCATTAGTTGA
GAAAGTTGCAAAAGAATGTGGCGAATATTCACATTGCAGACCTTGGATTA
GTGGTCATTTTACTGATCCAGAAAACGTGTATGGTGTCGTAACCAGATTA
CCGGATTGTGTTATTTTCCTTCACTGCCATAATACTGTATTCTTAGAACA
CGCAGCTGTCAGAGATGCTGCTAAATTGTTAATTCCTACAGTTGCGATTG
TCGATTCTAACTGCGACCCACGAATTATCACATATCCAATTCCAGGAAAT
GATGATAGCATATGCACAATTAGACTTTGGTTGGCACTTTTTCAAGAAGC
AATACGAAGGGGTAAAGAGAAACAAGGATCAAAAGTCGATTAGACCTTTT
CTGGCATGATATAAAAATGAATATAAAAATAATTTCGTCCGATTCATTTT
TGTAGAGAATTAATATTCCTACTGAAAAATTAATTTAAAAATATCATTTT
GTTAAGTAGCGTTCTATATTA
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protein sequence of SMED30010466-orf-1

>SMED30010466-orf-1 ID=SMED30010466-orf-1|Name=SMED30010466-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=241bp
MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLC
NVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEAL
NFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDP
ENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDP
RIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0000142posterior region of the whole animal
PLANA:0000429neoblast
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR005706Ribosomal_S2_bac/mit/plastid
IPR001865Ribosomal_S2
IPR023591Ribosomal_S2_flav_dom_sf
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0015935small ribosomal subunit
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 134..151
score: 23.16
coord: 183..194
score: 41.92
coord: 204..218
score: 43.28
coord: 84..93
score: 51.54
coord: 53..71
score: 25.83
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 57..160
e-value: 1.3E-21
score: 76.9
IPR001865Ribosomal protein S2CDDcd01425RPS2coord: 56..231
e-value: 1.52431E-60
score: 187.019
NoneNo IPR availableGENE3DG3DSA:3.40.50.10490coord: 46..235
e-value: 4.0E-60
score: 204.1
NoneNo IPR availablePANTHERPTHR12534:SF028S RIBOSOMAL PROTEIN S2, MITOCHONDRIALcoord: 29..237
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 29..237
IPR023591Ribosomal protein S2, flavodoxin-like domain superfamilySUPERFAMILYSSF52313Ribosomal protein S2coord: 53..235