Ribosomal protein S2
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010466 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of Ribosomal protein S2 vs. Ensembl Human
Match: MRPS2 (mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495]) HSP 1 Score: 214.927 bits (546), Expect = 5.280e-68 Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 +PL D+F V+ L +V LF R HLGHK R+ +M PY+FG+R DI DL +T L ALNF AH++YR GIILFISR+ Q L+E +A++CGEY+H R + G T+ ++G RLPD +IFLH N +F H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS + L+ LFQ AI R KEK+ Sbjct: 65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKR 264
BLAST of Ribosomal protein S2 vs. Ensembl Human
Match: MRPS2 (mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495]) HSP 1 Score: 214.927 bits (546), Expect = 5.280e-68 Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 +PL D+F V+ L +V LF R HLGHK R+ +M PY+FG+R DI DL +T L ALNF AH++YR GIILFISR+ Q L+E +A++CGEY+H R + G T+ ++G RLPD +IFLH N +F H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS + L+ LFQ AI R KEK+ Sbjct: 65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKR 264
BLAST of Ribosomal protein S2 vs. Ensembl Human
Match: MRPS2 (mitochondrial ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:14495]) HSP 1 Score: 203.371 bits (516), Expect = 5.953e-64 Identity = 100/192 (52.08%), Postives = 130/192 (67.71%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEA 701 +PL D+F V+ L +V LF R HLGHK R+ +M PY+FG+R DI DL +T L ALNF AH++YR GIILFISR+ Q L+E +A++CGEY+H R + G T+ ++G RLPD +IFLH N +F H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS + L+ LFQ A Sbjct: 79 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTA 270
BLAST of Ribosomal protein S2 vs. Ensembl Celegans
Match: mrps-2 (Mitochondrial Ribosomal Protein, Small [Source:UniProtKB/TrEMBL;Acc:O17004]) HSP 1 Score: 177.178 bits (448), Expect = 3.731e-54 Identity = 85/194 (43.81%), Postives = 121/194 (62.37%), Query Frame = 3 Query: 144 DYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 D F + +++++F R H GHK N M L+G R G+ +FDL+ T K L ALNFVAHVS RGG+ILF++ + T+ VEK A E G+YSH R W SG T+ + G RLPD V FL ++ H A+ +AAK+ IPT+ +VDSN DP +TY +P NDD+ + L +F+EA+R+G+E++ Sbjct: 64 DLFNFEKMVHIDEMFKARLHYGHKVGTVNNNMKWALYGERLGVCLFDLDITKKYLVRALNFVAHVSLRGGMILFVTSNRDTMFDVEKAADEVGQYSHVRKWQSGTLTNTRQLLGASVRLPDAVCFLSTLTSLGENHPAIVEAAKMAIPTIGVVDSNSDPAYLTYLVPANDDTPQSTEYLLRMFKEAVRKGQEER 257
BLAST of Ribosomal protein S2 vs. Ensembl Celegans
Match: mrps-2 (Mitochondrial Ribosomal Protein, Small [Source:UniProtKB/TrEMBL;Acc:O17004]) HSP 1 Score: 177.178 bits (448), Expect = 3.731e-54 Identity = 85/194 (43.81%), Postives = 121/194 (62.37%), Query Frame = 3 Query: 144 DYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 D F + +++++F R H GHK N M L+G R G+ +FDL+ T K L ALNFVAHVS RGG+ILF++ + T+ VEK A E G+YSH R W SG T+ + G RLPD V FL ++ H A+ +AAK+ IPT+ +VDSN DP +TY +P NDD+ + L +F+EA+R+G+E++ Sbjct: 64 DLFNFEKMVHIDEMFKARLHYGHKVGTVNNNMKWALYGERLGVCLFDLDITKKYLVRALNFVAHVSLRGGMILFVTSNRDTMFDVEKAADEVGQYSHVRKWQSGTLTNTRQLLGASVRLPDAVCFLSTLTSLGENHPAIVEAAKMAIPTIGVVDSNSDPAYLTYLVPANDDTPQSTEYLLRMFKEAVRKGQEER 257
BLAST of Ribosomal protein S2 vs. Ensembl Fly
Match: mRpS2 (gene:FBgn0031639 transcript:FBtr0077408) HSP 1 Score: 220.32 bits (560), Expect = 5.584e-71 Identity = 118/245 (48.16%), Postives = 151/245 (61.63%), Query Frame = 3 Query: 21 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDP----------LSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 MLR+ F+NL F Q + L S + + +P L DYF V NL V DLF+ R H GHKE + M PYLFG+R G IFDL+KT L +ALNF AH+++R GIILF +R+ LVE+ A+E GE+SH R W G FT+ + VTRLPD IFL+ N V +H AVRDAAK+ IPT+ IVDSNC+P +ITYP+PGNDDS + L+ LF+EAI RGK ++ Sbjct: 1 MLRKSFANLPRFGQ--MCGLPRRLQSTQPEQSVETEPEDIALVEQRILKHPDYFQVHNLFTVRDLFNARVHYGHKEGSLDDRMRPYLFGSRLGHLIFDLDKTASHLRDALNFAAHIAFRDGIILFFNRNAMNSHLVERKAQEAGEFSHTRFWRGGIFTNANVQFDAVTRLPDLCIFLNTQNNVMAQHTAVRDAAKMAIPTIGIVDSNCNPNLITYPVPGNDDSPAAVELYCNLFKEAILRGKRER 243
BLAST of Ribosomal protein S2 vs. Ensembl Zebrafish
Match: mrps2 (mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]) HSP 1 Score: 213.772 bits (543), Expect = 2.832e-68 Identity = 100/199 (50.25%), Postives = 134/199 (67.34%), Query Frame = 3 Query: 129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 PL+ DYF + L +++DLF R HLGHK+ R+ M PYLFG R +DI DL +T+ L ALNF AHV++RGG++LF+SR Q LVE A++CGEY+H R W G T+ Y RLPD ++FL N VF EH +RDAAK+ IPTV IVDSNC+P +I+YP+PGNDD+ + L+ LF+ I+R K+K+ Sbjct: 57 PLTQPDYFHLSELFSMKDLFDARVHLGHKKGCRHALMEPYLFGCRLDMDIIDLEQTVDHLQRALNFTAHVAFRGGVVLFVSRRRQFAHLVETTARDCGEYAHTRYWKGGLLTNAPIQYNPGVRLPDLIVFLSTLNNVFQEHVGIRDAAKMNIPTVGIVDSNCNPSLISYPVPGNDDTPAAMELYCRLFKMTIKRAKDKR 255
BLAST of Ribosomal protein S2 vs. Ensembl Mouse
Match: Mrps2 (mitochondrial ribosomal protein S2 [Source:MGI Symbol;Acc:MGI:2153089]) HSP 1 Score: 216.468 bits (550), Expect = 6.080e-69 Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 3 Query: 129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 PL D+F V+ L +V+ LF R HLGHK R+ +M PY+FGNR G DI DL++T L ALNF AHV+YR GIILF+SR+ Q L+E A+ CGEY+H R + G T+ + ++G RLPD +IFLH N VF H AVRDAAK+ IPTV IVD+NC+P +ITYPIPGNDDS I+L+ LF+ I R KEK+ Sbjct: 63 PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKR 261
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|P82923|RT02_BOVIN (28S ribosomal protein S2, mitochondrial OS=Bos taurus OX=9913 GN=MRPS2 PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 1.286e-68 Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 +PL D+F V+ L +V LF+ R HLGHK R+ +M PY+FG+R G DI DL +T L ALNF AHV++RGGIILF+SR Q L+E A+ CGEY+H R + G T+ + G RLPD +IFLH N VF H AVRDAAK+ IPTV +VD+NC+P +ITYP+PGNDDS ++L+ LFQ A+ R KEK+ Sbjct: 54 EPLKHSDFFNVKELFSVRSLFNARVHLGHKAGCRHRFMEPYIFGSRLGQDIIDLEQTATHLQLALNFTAHVAFRGGIILFVSRARQFSHLIESTARSCGEYAHTRYFKGGLLTNAPLLLGARVRLPDLIIFLHTLNNVFEPHVAVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPAVQLFCQLFQTAVTRAKEKR 253
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|Q924T2|RT02_MOUSE (28S ribosomal protein S2, mitochondrial OS=Mus musculus OX=10090 GN=Mrps2 PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 4.253e-68 Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 3 Query: 129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 PL D+F V+ L +V+ LF R HLGHK R+ +M PY+FGNR G DI DL++T L ALNF AHV+YR GIILF+SR+ Q L+E A+ CGEY+H R + G T+ + ++G RLPD +IFLH N VF H AVRDAAK+ IPTV IVD+NC+P +ITYPIPGNDDS I+L+ LF+ I R KEK+ Sbjct: 63 PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKR 261
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|Q9Y399|RT02_HUMAN (28S ribosomal protein S2, mitochondrial OS=Homo sapiens OX=9606 GN=MRPS2 PE=1 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 2.536e-67 Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 +PL D+F V+ L +V LF R HLGHK R+ +M PY+FG+R DI DL +T L ALNF AH++YR GIILFISR+ Q L+E +A++CGEY+H R + G T+ ++G RLPD +IFLH N +F H AVRDAAK+ IPTV IVD+NC+P +ITYP+PGNDDS + L+ LFQ AI R KEK+ Sbjct: 65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKR 264
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|A8F0I9|RS2_RICM5 (30S ribosomal protein S2 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rpsB PE=3 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 4.462e-33 Identity = 71/237 (29.96%), Postives = 115/237 (48.52%), Query Frame = 3 Query: 168 CNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRL--------------------------------------------PDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEK--QGSKVD 740 N+++L H GHK S NP M Y++G R + I DL +++ L+ ALN + + G ILF+S +Q ++ + A++CG+Y W+ G T+ + + G + +L PD ++ + + EH A+ +A KL +P VA+VD+N +P + YPIPGNDDSI +IRL+ +LF +A +G E+ + S VD Sbjct: 7 VNIKELLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKKDGKILFVSTKIQASDIIAEYAEKCGQYYVNHRWLGGMLTNWKTIAGSIEKLNKLDKTLENEEALMGYTKKEILDMSRKKDKLLLSLAGIRNLNSKPDLLVVIDTNK----EHIAINEAVKLNVPIVAVVDTNSNPDNVDYPIPGNDDSIRSIRLYCSLFADAALQGLEESMKASGVD 239
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Match: sp|O67809|RS2_AQUAE (30S ribosomal protein S2 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsB PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 6.461e-33 Identity = 74/232 (31.90%), Postives = 112/232 (48.28%), Query Frame = 3 Query: 165 LCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVV-------------------------------------------TRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGS 731 + ++++L H GH +S NP M PY++G R GI I DLNKTI +L +A +FV+ V +GG ILF+ Q ++++ A+ CG + W+ G T+ + V + +LPD + + E AV +A KL IP VAI DSNCDP +I Y IPGNDD+I +I+L + +A+ GK+++ S Sbjct: 3 VVSMKELLEAGVHFGHSKSRWNPKMAPYIYGVRHGIHIIDLNKTIVMLEDAYHFVSDVIAQGGEILFVGTKKQAKDIIKEEAERCGAFYVNERWVGGLLTNFQTVRKSIMKLQTLERMEEDGIFDVLPKKEVRNLRRKMEKLRKLYNGIRDMKKLPDVIWIVDT----VREKIAVSEARKLGIPIVAIADSNCDPTVIDYTIPGNDDAIKSIKLLTSKIADAVLEGKQRRES 230
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A0R3VVR2 (Uncharacterized protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS1489 PE=3 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 2.377e-90 Identity = 127/197 (64.47%), Postives = 153/197 (77.66%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGK 716 DPL T DYFG+R++ +VE LF+ RA+LGH+ +RNPYM PYLFG RQGIDIFDL +T +LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK GEYS+CRPW G FTD N YG TRLPD +I L+ N++ EH AVRDAAK+LIPTV IVDSNCDPR++TYP+PGNDDS TIR W +LF EAI K Sbjct: 3 DPLQTPDYFGLRDMVSVEQLFNVRAYLGHRSMLRNPYMTPYLFGTRQGIDIFDLEQTAQLLFDALNFTAHIAYRGGIILFMIQHRQMMHLVEKTAKMVGEYSYCRPWGGGVFTDSTNFYGATTRLPDLIIMLNTMNSLGFEHVAVRDAAKMLIPTVGIVDSNCDPRLVTYPVPGNDDSPVTIRHWCSLFAEAIMLAK 199
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: R7TVE8 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_21914 PE=3 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 7.906e-90 Identity = 128/209 (61.24%), Postives = 162/209 (77.51%), Query Frame = 3 Query: 99 EVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 E TQ+ ++PL DYF V+ L DLF+ R HLGHK RNPYM+PY+FGNR G+DI DL++T +L+ EALNF+AHV+YR GIILFISRHL TIPLVEK A+ECGEYSHCR W++G T+ +G VTRLPD IFL +TVF +HAAV +AAK+ IP+VA+VDS CDPR+ITYPIPGNDD+ C + L+L LF+EAI +GK+++ Sbjct: 32 ESTQT--SINPLEHDDYFDVKRLTKKIDLFNNRVHLGHKVGTRNPYMLPYIFGNRLGVDILDLDQTHELMKEALNFIAHVAYRDGIILFISRHLHTIPLVEKAAEECGEYSHCRQWMTGTLTNSSVKFGAVTRLPDLCIFLSTQDTVFEQHAAVIEAAKMYIPSVAVVDSACDPRLITYPIPGNDDTPCAVELYLKLFKEAILKGKQQR 238
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A0R3X6S3 (Uncharacterized protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS9206 PE=3 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 2.634e-89 Identity = 128/203 (63.05%), Postives = 154/203 (75.86%), Query Frame = 3 Query: 108 QSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGK 716 S +DPL + DYFG+R++ +VE LF+ RAHLGH+ +RNPYM PYLFG+RQGIDIFDL +T +LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK GEYS+CRPW G FTD N YG TRLPD +I L+ N V +H AVRDAAK+LIPTV IVDSNCDPR+ITYP+PGNDDS TIR W LF E+I K Sbjct: 26 SSPVMIDPLQSPDYFGLRDIVSVEQLFNARAHLGHRSLLRNPYMTPYLFGSRQGIDIFDLEQTAELLFDALNFTAHIAYRGGIILFMIQHRQMMHLVEKTAKAVGEYSYCRPWGGGVFTDSTNFYGATTRLPDLIIMLNTVNPVGFDHVAVRDAAKMLIPTVGIVDSNCDPRLITYPVPGNDDSPVTIRHWCGLFAESIAHAK 228
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A0R3UFY4 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS6077 PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 9.152e-89 Identity = 125/204 (61.27%), Postives = 153/204 (75.00%), Query Frame = 3 Query: 111 SCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEK 722 S + +PL + DYFG+R++ +VE LF RAHLGH+ +RNPYM PYLFG RQGIDIFDL +T++LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK GEYS+CRPW G FTD N +G TRLPD +I L+ + H AVRDAAK+LIPTV IVDSNCDPR+ITYP+PGNDDS TIR W LF EA+ GK + Sbjct: 31 SAKMNNPLESPDYFGLRHVISVEQLFKVRAHLGHRSMLRNPYMTPYLFGTRQGIDIFDLEQTVELLFDALNFTAHIAYRGGIILFMIQHRQMMQLVEKTAKMVGEYSYCRPWGGGVFTDSSNFFGSTTRLPDLIIMLNTVTPIGSGHVAVRDAAKMLIPTVGIVDSNCDPRLITYPVPGNDDSPVTIRYWCGLFAEAVAHGKRR 234
BLAST of Ribosomal protein S2 vs. TrEMBL
Match: A0A068WFJ0 (28S ribosomal protein S2 mitochondrial OS=Echinococcus granulosus OX=6210 GN=EgrG_000631300 PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 1.090e-88 Identity = 131/221 (59.28%), Postives = 157/221 (71.04%), Query Frame = 3 Query: 69 LKLFNADLHSEVTQSCEQV-----DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGK 716 L L +L S + S DPL + DYFG+R++ +VE LF RAHLGH+ +RNPYM PYLFG RQGIDIFDL +T +LL +ALNF AH++YRGGIILF+ +H Q + LVEK AK GEYS+CRPW G FTD N +G TRLPD +I L+ N V +H AVRDAAK+LIPTV IVDSNCDPR++TYP+PGNDDS TIR W LF EAI K Sbjct: 12 LALLRRNLLSTIASSSSHTSPAMPDPLQSPDYFGLRDVVSVEQLFKVRAHLGHRSMLRNPYMTPYLFGTRQGIDIFDLEQTAELLFDALNFTAHIAYRGGIILFMIQHRQMMHLVEKTAKMIGEYSYCRPWGGGVFTDSTNFFGATTRLPDLIIMLNTVNPVGFDHVAVRDAAKMLIPTVGIVDSNCDPRLVTYPVPGNDDSPVTIRHWCGLFAEAIAHAK 232
BLAST of Ribosomal protein S2 vs. Ensembl Cavefish
Match: mrps2 (28S ribosomal protein S2, mitochondrial-like [Source:NCBI gene;Acc:111188469]) HSP 1 Score: 214.927 bits (546), Expect = 9.194e-69 Identity = 100/199 (50.25%), Postives = 134/199 (67.34%), Query Frame = 3 Query: 129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 PL+ D+F + L ++DLF R HLGHK+ R+ M PYLFG+R +DI DL++T+ L ALNF AHV+YRGGI+LF+SR Q LVE+ A+ CGEY+H R W G T+ YG RLPD +IFL N VF H +RDAAK+ IPT+ +VDSNC+P ++TYP+PGNDD+ ++ L+ LF+ I R K K+ Sbjct: 60 PLTQPDFFNLSELFTMKDLFEARVHLGHKKGCRHRLMEPYLFGSRLDVDIIDLDQTMDHLQRALNFTAHVAYRGGIVLFVSRRRQFAHLVERTAQGCGEYAHTRYWQGGLLTNAPVQYGAGVRLPDLIIFLSTLNNVFQTHVGLRDAAKMNIPTIGVVDSNCNPSLVTYPVPGNDDTPISMELYCRLFKMTINRAKGKR 258
BLAST of Ribosomal protein S2 vs. Ensembl Cavefish
Match: ENSAMXT00000055095.1 (pep primary_assembly:Astyanax_mexicanus-2.0:14:28897452:28901616:1 gene:ENSAMXG00000030887.1 transcript:ENSAMXT00000055095.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.0922 bits (170), Expect = 5.010e-14 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 3 Query: 480 YGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSN-CDPRI-----ITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 YG RLPD +IFL N VF H +RDAAK+ IPT+ +VDS +P + + + PGNDD+ ++ L+ LF+ I R K K+ Sbjct: 101 YGAGVRLPDLIIFLSTLNNVFQTHVGLRDAAKMNIPTIGVVDSQPANPSLSLRTRVFFWAPGNDDTPISMELYCRLFKMTINRAKGKR 188
BLAST of Ribosomal protein S2 vs. Ensembl Sea Lamprey
Match: mrps2 (mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]) HSP 1 Score: 206.453 bits (524), Expect = 1.218e-66 Identity = 102/203 (50.25%), Postives = 133/203 (65.52%), Query Frame = 3 Query: 126 DPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVY---GVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 +PL D+F V L ++ DLF+ R HLGHK RN YM PY++G R G DI DL++T++ L ALNF AHV+YRGG +LF++R Q + LVE+ A+ CGE +G D GV RLPD ++FL N F +H AVRDAAKL +PTV IVDSNCDP I+T+P+PGNDDS +RL+ ALF+ I R KE++ Sbjct: 10 EPLKHPDFFRVSELVSLRDLFTARVHLGHKRGCRNRYMTPYIYGCRLGQDIIDLDQTLEHLVSALNFTAHVAYRGGAVLFVTRARQHVHLVEETARACGELDG-----AGAGRDVRRAVARAGVGVRLPDLLVFLGTQNNAFEQHVAVRDAAKLSVPTVGIVDSNCDPSIVTFPVPGNDDSPSAVRLYCALFRATITRAKERR 207
BLAST of Ribosomal protein S2 vs. Ensembl Yeast
Match: MRP4 (Mitochondrial ribosomal protein of the small subunit [Source:SGD;Acc:S000000996]) HSP 1 Score: 107.842 bits (268), Expect = 2.471e-27 Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 3 Query: 174 VEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFI-SRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRL-----------------------PDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRG 713 VE L S HLG S+ Y++G +GI I DLN+T+ L A V VS GGIILF+ +R Q L E K G Y R WI G T+ + G+ + PD ++ L+ A+ +A K +PT+AI+D++ +P ++TYPIPGNDDS+ ++ L + A +RG Sbjct: 185 VESLMSAGVHLGQSTSLWRSSTQSYIYGEYKGIHIIDLNQTLSYLKRAAKVVEGVSESGGIILFLGTRQGQKRGLEEAAKKTHGYYVSTR-WIPGTLTNSTEISGIWEKQEIDSNDNPTERALSPNETSKQVKPDLLVVLNPTEN----RNALLEAIKSRVPTIAIIDTDSEPSLVTYPIPGNDDSLRSVNFLLGVLARAGQRG 383
BLAST of Ribosomal protein S2 vs. Ensembl Nematostella
Match: EDO30794 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SZR8]) HSP 1 Score: 151.369 bits (381), Expect = 2.922e-45 Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 3 Query: 132 LSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVV-TR-LPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 L+ D+F V L ++ DLF H GH E NP M PYL+G R+ I DLN+TIK AL+ + H YRGG +LFIS Q L + +A++ GEY + W G FT N Y V+ TR LPD V+FLH ++ AV++ A IP++ IVDS+C+P +I YPIPGNDD ++++ +F+ A+ KEK+ Sbjct: 1 LNQQDFFDVHQLVSLRDLFVAGVHYGHHEGCWNPLMKPYLYGTREHFHIIDLNQTIKHFRLALDVLCHTVYRGGKVLFISCKPQFEELTQSLARDSGEYFVTQRWRGGTFT---NSYMVLETRNLPDLVVFLHV-PSLGRNALAVKETAMCNIPSIGIVDSDCNPNLIMYPIPGNDDMPSAVQMYCRIFKSAVLTAKEKR 196
BLAST of Ribosomal protein S2 vs. Ensembl Medaka
Match: mrps2 (mitochondrial ribosomal protein S2 [Source:NCBI gene;Acc:101160674]) HSP 1 Score: 214.542 bits (545), Expect = 1.288e-68 Identity = 104/199 (52.26%), Postives = 135/199 (67.84%), Query Frame = 3 Query: 129 PLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQ 725 PL D+F V L +++DLF R HLGHK+ R+ M PYL+G R DIFDL++T++ L ALNF AH++YRGGIILF+SR Q LVE AK+CGEY+H R W G T+ YG RLPD +IFL N VF +H VRDAAK+ IPTV +VDSNC+P ++TYP+PGNDD+ + L+ LF+ I R K+K+ Sbjct: 54 PLEKPDFFRVAELFSLKDLFDARVHLGHKKGCRHRLMEPYLYGCRLDQDIFDLDQTVEHLQLALNFTAHIAYRGGIILFVSRRRQFGHLVESTAKDCGEYAHTRYWQGGLLTNANIQYGPGVRLPDLIIFLSTLNNVFQQHVGVRDAAKMNIPTVGVVDSNCNPCLVTYPVPGNDDTPVAMELYCRLFKMTINRAKDKR 252
BLAST of Ribosomal protein S2 vs. Planmine SMEST
Match: SMESG000028845.1 (SMESG000028845.1) HSP 1 Score: 500.745 bits (1288), Expect = 0.000e+0 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 3 Query: 21 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD 740 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD Sbjct: 1 MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCNVEDLFSFRAHLGHKESVRNPYMVPYLFGNRQGIDIFDLNKTIKLLGEALNFVAHVSYRGGIILFISRHLQTIPLVEKVAKECGEYSHCRPWISGHFTDPENVYGVVTRLPDCVIFLHCHNTVFLEHAAVRDAAKLLIPTVAIVDSNCDPRIITYPIPGNDDSICTIRLWLALFQEAIRRGKEKQGSKVD 240 The following BLAST results are available for this feature:
BLAST of Ribosomal protein S2 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of Ribosomal protein S2 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Ribosomal protein S2 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Ribosomal protein S2 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of Ribosomal protein S2 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Ribosomal protein S2 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of Ribosomal protein S2 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Ribosomal protein S2 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Ribosomal protein S2 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of Ribosomal protein S2 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of Ribosomal protein S2 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Ribosomal protein S2 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Ribosomal protein S2 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of Ribosomal protein S2 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010466 ID=SMED30010466|Name=Ribosomal protein S2|organism=Schmidtea mediterranea sexual|type=transcript|length=871bpback to top protein sequence of SMED30010466-orf-1 >SMED30010466-orf-1 ID=SMED30010466-orf-1|Name=SMED30010466-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=241bp MLRQKFSNLFFFKQNVLKLFNADLHSEVTQSCEQVDPLSTYDYFGVRNLCback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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