SMED30010448

Overview
NameSMED30010448
Smed IDSMED30010448
Length (bp)775
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30010448 (SMED30010448) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30010448 (SMED30010448) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30010448 (SMED30010448) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30010448 (SMED30010448) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010448

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30010448 dd_Smed_v4_15956_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30010448 vs. TrEMBL
Match: A0A401T1F0 (HTH CENPB-type domain-containing protein OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0014986 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 8.462e-20
Identity = 37/117 (31.62%), Postives = 65/117 (55.56%), Query Frame = -1 
Query:   44 LAISGGIEGVVEDDIHTLLKSYGEPLTNEELQEIDCHTPLENDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAKQGDLDSFIQ 394
            LA + G + V E D+  LL+S+GE L+NE+L +++     E D  E  P + L+ K + +A  +  + +E+  E+D +  R   V R  N  ++ Y++I R K+++  Q  LD F +
Sbjct:  759 LARAVGFDEVDETDVVELLESHGEELSNEDLMQLESQRAEEEDRIEIPPPQILSTKRLSRAFQIMEEAMEIFTEDDPNRERSAKVNRAINDGINCYKEIYRQKKKKTVQHSLDKFFK 875

HSP 2 Score: 60.077 bits (144), Expect = 8.462e-20
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = -2 
Query:  436 KKLHQLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGE 603
            +   QLI ET G    ++R +W+ +NI++ I NI  +WNEVT SC+  VW++L+ E
Sbjct:  682 RTFSQLIYETDGENAPSVREFWRGYNILEGINNIADSWNEVTSSCLNSVWRKLWPE 737
[Close]
BLAST of SMED30010448 vs. TrEMBL
Match: K7G0J5 (HTH CENPB-type domain-containing protein OS=Pelodiscus sinensis OX=13735 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.384e-18
Identity = 36/110 (32.73%), Postives = 63/110 (57.27%), Query Frame = -1 
Query:   77 LAISGGIEGVVEDDIHTLLKSYGEPLTNEELQEIDCHTPLENDESEPIPV----RNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRRE 394
            LA   G + V EDD+  LL+S+GE LTNEEL +++    +E  + E + V    +NLT K + +A  +    +++L ++D D  R + V +    L+  Y++I + K+R+
Sbjct:  440 LAKKAGFDEVEEDDVTQLLQSHGEELTNEELMQLEAMRAMEEKDQE-VKVETTHQNLTAKRLSEAFQMIEAGLQILNDDDPDRERSSKVIKGVGHLMTCYKEIYQEKKRK 548

HSP 2 Score: 58.151 bits (139), Expect = 1.384e-18
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = -2 
Query:  436 QLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGE 591
            QLI  T G GK  +R +W  +NI+K I NI KAW +VT++CM GVW +L+ E
Sbjct:  367 QLIRGTEGEGKPTIRQFWHDYNILKCINNIGKAWADVTQACMNGVWAKLWPE 418

HSP 3 Score: 25.409 bits (54), Expect = 1.384e-18
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = -1 
Query:  602 PKDQGTISALKVY*LK 649
            P DQG ISA K Y L+
Sbjct:  347 PMDQGAISAFKAYYLR 362
[Close]
BLAST of SMED30010448 vs. TrEMBL
Match: A0A4X2L2R9 (HTH CENPB-type domain-containing protein OS=Vombatus ursinus OX=29139 GN=LOC114040919 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.374e-16
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = -1 
Query:   71 GGIEGVVEDDIHTLLKSYGEPLTNEELQEIDCHTPLENDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAK 382
            GG+EGVVE+D+  LL+S GE L+ E L      T  +N  + P     L+ + + +ALS  +Q +++L +ND +  R   V R  N+++  YR++ + K+R AK
Sbjct:  430 GGLEGVVEEDVVHLLQSQGEDLSGEGLGMSSPGTGQDNTLATP---PELSTRHLAEALSHFDQGLQILSDNDPNRERSLKVCRGVNSVISCYRELYKEKKRAAK 530

HSP 2 Score: 54.299 bits (129), Expect = 3.374e-16
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = -2 
Query:  409 KKLHQLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGEITEIHSYYE 603
            + L QLI ET G  +  +R +W+ +NIM  + NI +AW E+  S M  VWK+++ E     S  E
Sbjct:  357 RTLCQLIQETDGEERPTIREFWRSYNIMTAVDNIAEAWQELKPSTMNAVWKKIWPECVRASSEAE 421
[Close]
BLAST of SMED30010448 vs. TrEMBL
Match: A0A5S6QVR2 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.262e-15
Identity = 41/129 (31.78%), Postives = 57/129 (44.19%), Query Frame = -1 
Query:   32 RLAISGGIEGVVEDDIHTLLKSYGEPLTNEELQEIDCHTPLE-------NDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAKQGDLDSFIQRRAK 397
            +LA   G EGV   DI  +L    + LT EELQE+      E       N E  P P R +T   +   L    Q ++ LE+ND +  R     R   A L+ Y+Q+L  +   AKQ  L+ +     K
Sbjct:  378 QLANRLGFEGVEYQDIEDILSCQPDELTTEELQELSVAGEAEGREEDDENQEVPPPPPRQMTTAELSDTLETIEQRLQWLEDNDCNAERSGKTTRGIRACLEPYKQLLYERSTRAKQKKLEFYFTAMKK 506

HSP 2 Score: 48.1358 bits (113), Expect = 1.262e-15
Identity = 19/57 (33.33%), Postives = 34/57 (59.65%), Query Frame = -2 
Query:  433 KKLHQLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGEI 603
            +    LI+ T G   + +  +WK +N+   I NI +AWN+V+K C+  VW++L  ++
Sbjct:  300 RTFKMLIDATDGENCETVMEFWKNYNLRMAINNIVEAWNDVSKRCLHRVWRKLIPDL 356

HSP 3 Score: 25.7942 bits (55), Expect = 1.262e-15
Identity = 13/34 (38.24%), Postives = 19/34 (55.88%), Query Frame = -1 
Query:  596 IQFTYIQLTSLALDQVPKDQGTISALKVY*LKET 697
            + F ++   + +L Q P DQG I A K Y L+ T
Sbjct:  269 VHFVFLPARTTSLLQ-PLDQGVIGAFKAYYLRRT 301
[Close]
BLAST of SMED30010448 vs. TrEMBL
Match: A0A5S6Q6E1 (Uncharacterized protein OS=Trichuris muris OX=70415 PE=4 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.343e-15
Identity = 40/126 (31.75%), Postives = 60/126 (47.62%), Query Frame = -1 
Query:   32 RLAISGGIEGVVEDDIHTLLKSYGEPLTNEELQEIDCHTPLE----NDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAKQGDLDSFIQRRAK 397
            +LA   G EGV   DI  +L    + LT EELQE+      E    +DE++ +P R +T   +   L    Q ++ LE+ND +  R     R   A L+ Y+Q+L  +   AKQ  L+ +     K
Sbjct:  206 QLANKLGFEGVEYQDIEDILSCQPDELTTEELQELSVAGEAEGREEDDENQEVPPRQMTTAELSDTLETIEQRLQWLEDNDCNAERSGKTTRGIRACLEPYKQLLYERSTRAKQKKLEFYFTAMKK 331

HSP 2 Score: 45.8246 bits (107), Expect = 3.343e-15
Identity = 19/52 (36.54%), Postives = 33/52 (63.46%), Query Frame = -2 
Query:  433 LINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGEI 588
            LI+ T G   + +  +WK +N+   I NI +AWN+V+K C+  VW++L  ++
Sbjct:  133 LIDATDGENCETVMEFWKNYNLRMAINNIVEAWNDVSKRCLHCVWRKLIPDL 184

HSP 3 Score: 28.1054 bits (61), Expect = 3.343e-15
Identity = 13/34 (38.24%), Postives = 20/34 (58.82%), Query Frame = -1 
Query:  596 IQFTYIQLTSLALDQVPKDQGTISALKVY*LKET 697
            + F ++   + +L Q P DQG I+A K Y L+ T
Sbjct:   97 VHFVFLPARTTSLLQ-PLDQGVIAAFKAYYLRRT 129
[Close]
BLAST of SMED30010448 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003106.1 (pep scaffold:Pmarinus_7.0:GL476998:37517:41189:1 gene:ENSPMAG00000002845.1 transcript:ENSPMAT00000003106.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.6766 bits (117), Expect = 2.633e-15
Identity = 29/109 (26.61%), Postives = 56/109 (51.38%), Query Frame = -1 
Query:   41 VVEDDIHTLLKSYGEPLTNEELQEIDCHTPLENDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAKQGDLDSFIQR 367
            V  +D+  LL S+   L+NE+L +++     E  +++  P  +L+ K + +A       + LLE+ND ++ R +       +    YR+I R +++ A Q  LD F ++
Sbjct:  374 VAPEDVGELLASHAHELSNEDLLQLEQQRLEEETQTQETPHPSLSTKVLSEAFQHFETGMALLEKNDPNFERSSKASEIIRSGYTCYREIYREQKKAAVQTSLDLFFKK 482

HSP 2 Score: 40.817 bits (94), Expect = 2.633e-15
Identity = 18/53 (33.96%), Postives = 31/53 (58.49%), Query Frame = -2 
Query:  433 QLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGEI 591
            Q I+ T   G   +  +WK F+I+  ++NI  +W E+ +S + GVW++L  E 
Sbjct:  293 QAISATDKEGGPTLTEFWKGFSILDAVKNIAASWKEMKQSNLNGVWRKLCPEF 345

HSP 3 Score: 26.9498 bits (58), Expect = 2.633e-15
Identity = 13/34 (38.24%), Postives = 21/34 (61.76%), Query Frame = -1 
Query:  596 IQFTYIQLTSLALDQVPKDQGTISALKVY*LKET 697
            I+  ++   + AL Q P DQG +S+ K Y L++T
Sbjct:  258 IKVVFLTPNTTALLQ-PMDQGVMSSFKAYYLRQT 290
[Close]
BLAST of SMED30010448 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006798.1 (pep scaffold:Pmarinus_7.0:GL478691:31611:33359:1 gene:ENSPMAG00000006139.1 transcript:ENSPMAT00000006798.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 40.0466 bits (92), Expect = 3.267e-9
Identity = 19/56 (33.93%), Postives = 30/56 (53.57%), Query Frame = -2 
Query:  436 KKLHQLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGE 603
            + + QL+  T G  K  +R  WK +NI   I NI  +W++V +S M   W  ++ E
Sbjct:  285 RTISQLLEGTDGPDKPTVRDCWKAYNIRDAINNIKSSWDDVKQSTMNCAWNAIWKE 340

HSP 2 Score: 36.965 bits (84), Expect = 3.267e-9
Identity = 31/114 (27.19%), Postives = 55/114 (48.25%), Query Frame = -1 
Query:   38 GIEGVVEDDIHTLLKSYGEPLTNEELQEIDCHTPLENDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAKQGDLDSFIQRR 379
            G   + EDD+  LL SY E LT ++L  I        ++   + V+++T K +   LS  +   +   + D    R    KR  N+++  Y+++   K+R AKQ  +  F++ R
Sbjct:  369 GFSDMREDDVLELLDSYNEELTVDDLMSIAAAD-EAEEQEVVLNVKDMTSKKLTYFLSQADALAQTAMDMDPSLERSLQFKRALNSIIAPYKEVHAQKQR-AKQCTMFQFLRLR 480
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BLAST of SMED30010448 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004972.1 (pep scaffold:Pmarinus_7.0:GL476545:74372:75575:-1 gene:ENSPMAG00000004517.1 transcript:ENSPMAT00000004972.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 53.1434 bits (126), Expect = 1.699e-8
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = -2 
Query:  442 LINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLF 588
            L++E     +  +R+ WK+ N++  IRNI +AW EVTK CM G+WK L 
Sbjct:  312 LLSEKHATEEKELRMIWKESNVLNAIRNIGRAWKEVTKECMNGIWKNLL 360
[Close]
BLAST of SMED30010448 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000003283.1 (pep scaffold:Pmarinus_7.0:GL479064:1419:3178:1 gene:ENSPMAG00000003000.1 transcript:ENSPMAT00000003283.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 39.6614 bits (91), Expect = 2.847e-8
Identity = 25/83 (30.12%), Postives = 40/83 (48.19%), Query Frame = -2 
Query:  340 LINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGEITEIHSYYENNIVV*PFPEASKVLLKMIFILC 588
            LI  T G    A  + W+ FNI + I  I +AW ++T+ C+ GV ++L   + +  ++           EA +  LK I I C
Sbjct:  325 LIEATDGENSQAS-VTWRSFNIKQAIDIIVEAWTDITQPCLNGVCRKLPHVVRDFRAF-----------EAQQEQLKKIQIQC 395

HSP 2 Score: 34.2686 bits (77), Expect = 2.847e-8
Identity = 29/102 (28.43%), Postives = 48/102 (47.06%), Query Frame = -1 
Query:   47 SYGEPLTNEELQEIDCHT------PLENDESEPIPVRNLTVKTIEKALSLHNQCVELLEENDEDY*RVNAVKRDCNALLDGYRQILRNKRREAKQGDLDSFI 334
            S+ E L+ EELQ++            ++ + E  P R LT   +  AL    + ++ LE+ND +  R   +     A L  Y ++L  KR+  KQ  +D F+
Sbjct:  413 SHREELSTEELQKLTAEVVAAIEEDDDDGDPEEAPPRELTAAILSSALQDFERGMQKLEDNDCNAKRSAKILPAIKAQLAPYVELLEEKRKATKQRKIDQFL 514
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BLAST of SMED30010448 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005921.1 (pep scaffold:Pmarinus_7.0:GL487978:976:2666:1 gene:ENSPMAG00000005352.1 transcript:ENSPMAT00000005921.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.7506 bits (112), Expect = 1.164e-6
Identity = 17/57 (29.82%), Postives = 36/57 (63.16%), Query Frame = -2 
Query:  433 KKLHQLINETGGGGKDAMRLWWKQFNIMKDIRNIDKAWNEVTKSCMKGVWKRLFGEI 603
            + L Q +  T G     +R +W+ +++ + ++NI KAW EVT++C+ G W+++  ++
Sbjct:  296 RTLAQALEATEGDTGKTVREFWEAYDVYQAVQNIAKAWAEVTQTCLNGAWEKMCPQL 352
The following BLAST results are available for this feature:
BLAST of SMED30010448 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A401T1F08.462e-2031.62HTH CENPB-type domain-containing protein OS=Chilos... [more]
K7G0J51.384e-1832.73HTH CENPB-type domain-containing protein OS=Pelodi... [more]
A0A4X2L2R93.374e-1635.58HTH CENPB-type domain-containing protein OS=Vombat... [more]
A0A5S6QVR21.262e-1531.78Uncharacterized protein OS=Trichuris muris OX=7041... [more]
A0A5S6Q6E13.343e-1531.75Uncharacterized protein OS=Trichuris muris OX=7041... [more]
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BLAST of SMED30010448 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000003106.12.633e-1526.61pep scaffold:Pmarinus_7.0:GL476998:37517:41189:1 g... [more]
ENSPMAT00000006798.13.267e-933.93pep scaffold:Pmarinus_7.0:GL478691:31611:33359:1 g... [more]
ENSPMAT00000004972.11.699e-844.90pep scaffold:Pmarinus_7.0:GL476545:74372:75575:-1 ... [more]
ENSPMAT00000003283.12.847e-830.12pep scaffold:Pmarinus_7.0:GL479064:1419:3178:1 gen... [more]
ENSPMAT00000005921.11.164e-629.82pep scaffold:Pmarinus_7.0:GL487978:976:2666:1 gene... [more]
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BLAST of SMED30010448 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010448 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010448 ID=SMED30010448|Name=SMED30010448|organism=Schmidtea mediterranea sexual|type=transcript|length=775bp
AAATACAATGAATAAATTAATAATTTATTCATTTTGCTCGACGTTGTATA
AAGGAATCTAGATCCCCTTGTTTGGCTTCTCTACGTTTATTGCGCAAAAT
TTGCCGATAACCATCAAGCAATGCATTACAGTCACGTTTAACAGCATTTA
CTCGCTAGTAATCTTCATCGTTCTCTTCTAACAACTCCACACATTGATTG
TGAAGAGAAAGGGCCTTTTCGATAGTTTTTACAGTCAAATTTCTGACTGG
AATAGGTTCGGATTCGTCATTTTCTAGGGGTGTATGACAGTCAATTTCCT
GTAGCTCTTCATTAGTCAAGGGTTCACCGTATGATTTTAACAAAGTATGA
ATATCATCTTCAACAACACCTTCGATGCCTCCGGAAATGGCTAGACGACA
ATATTATTTTCATAATAGCTGTGAATTTCAGTAATTTCACCGAACAATCG
TTTCCAAACACCCTTCATACACGACTTGGTGACTTCATTCCACGCTTTGT
CGATGTTTCTGATGTCTTTCATAATATTAAATTGTTTCCACCAAAGCCGC
ATGGCATCTTTACCACCTCCACCAGTTTCATTAATGAGTTGATGCAGTTT
CTTTTAATTAATAAACTTTCAATGCTGATATTGTGCCTTGATCCTTAGGC
ACTTGATCCAAAGCTAAACTAGTCAACTGTATGTATGTAAATTGTATCTA
CTAAGAGCCACGTAGAGACATTATTTTATCTCACTCACTCTCATGACTTA
CTACACCAGCTGTCACTGAGATAAA
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protein sequence of SMED30010448-orf-1

>SMED30010448-orf-1 ID=SMED30010448-orf-1|Name=SMED30010448-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=106bp
MILTKYEYHLQQHLRCLRKWLDDNIIFIIAVNFSNFTEQSFPNTLHTRLG
DFIPRFVDVSDVFHNIKLFPPKPHGIFTTSTSFINELMQFLLINKLSMLI
LCLDP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0003116parenchymal cell