DNA primase
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010424 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of DNA primase vs. Ensembl Human
Match: PRIM1 (DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]) HSP 1 Score: 354.369 bits (908), Expect = 2.989e-119 Identity = 189/405 (46.67%), Postives = 251/405 (61.98%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSL-VCQLEYENSTKVID-------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS--------------------TQDIHSTSFGKYLDIFERFINDL 1188 EL+K++Y+ +FP S + RWL+YG F +REFSFTLKDDIY+RY SF ++++ +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK ++K +HP I +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S L +W L Y+N+ K EI +++ +PRLD+NVS G+NHLLKSPFSVHP TGRI VPID+ VD+FDPF VPT+ EL + T+D TS Y+ +FE F+ +L Sbjct: 11 ELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEK-----IHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETI---HDELQQSFQKSHNS-----LQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENL 402
BLAST of DNA primase vs. Ensembl Human
Match: PRIM1 (DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]) HSP 1 Score: 335.88 bits (860), Expect = 1.537e-111 Identity = 189/444 (42.57%), Postives = 251/444 (56.53%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSL-VCQLEYENSTKVID-------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPS---------------------------------------TGRICVPIDIGSVDEFDPFNVPTLEQTISELRS--------------------TQDIHSTSFGKYLDIFERFINDL 1188 EL+K++Y+ +FP S + RWL+YG F +REFSFTLKDDIY+RY SF ++++ +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK ++K +HP I +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S L +W L Y+N+ K EI +++ +PRLD+NVS G+NHLLKSPFSVHP TGRI VPID+ VD+FDPF VPT+ EL + T+D TS Y+ +FE F+ +L Sbjct: 11 ELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEK-----IHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETI---HDELQQSFQKSHNS-----LQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTESHSVTQAGVQWRDLGSLQPLPSRFKQFSASPSQVAGITGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENL 441
BLAST of DNA primase vs. Ensembl Human
Match: PRIM1 (DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]) HSP 1 Score: 304.679 bits (779), Expect = 3.736e-101 Identity = 160/330 (48.48%), Postives = 214/330 (64.85%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGNDEA-----FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSL-VCQLEYENSTKVID-------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVH 1014 EL+K++Y+ +FP S + RWL+YG + F +REFSFTLKDDIY+RY SF ++++ +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK ++K +HP I +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S L +W L Y+N+ K EI +++ +PRLD+NVS G+NHLLKSPFSVH Sbjct: 11 ELLKLYYRRLFPYSQYYRWLNYGGGDGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEK-----IHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETI---HDELQQSFQKSHNS-----LQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVH 327
BLAST of DNA primase vs. Ensembl Human
Match: PRIM1 (DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]) HSP 1 Score: 170.629 bits (431), Expect = 6.287e-51 Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALR 468 EL+K++Y+ +FP S + RWL+YG F +REFSFTLKDDIY+RY SF ++++ +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI++IDRAL+ Sbjct: 11 ELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALK 147
BLAST of DNA primase vs. Ensembl Human
Match: PRIM1 (DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]) HSP 1 Score: 105.531 bits (262), Expect = 1.188e-26 Identity = 57/154 (37.01%), Postives = 89/154 (57.79%), Query Frame = 1 Query: 682 ESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECC----------EYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL 1113 +SI IIK +FE+Y Q+ L ++ +++L+++P++ E+ + ++ N+ ++D ++W EI +++ +PRLD+NVS G+NHLLKSPFSVHP TGRI VPID+ VD+FDPF VPT+ EL Sbjct: 2 KSINIIKKYFEEYALVNQDILENKESWDKILALVPEKSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEW-----------------EIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICREL 138
BLAST of DNA primase vs. Ensembl Celegans
Match: pri-1 (DNA primase small subunit [Source:UniProtKB/Swiss-Prot;Acc:P34471]) HSP 1 Score: 237.269 bits (604), Expect = 2.778e-74 Identity = 144/377 (38.20%), Postives = 204/377 (54.11%), Query Frame = 1 Query: 37 MSEISVHHDELIKIFYKTIFPSSLFCRWLSYG--NDEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPH--FEK------------YLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS 1119 MS S+ + + I+YK FP F +WL YG N + F REF+F L DD+++RY S+ DE+ F + L NP K+DIGAVYN EP N+K+ + V +ELVFDID+TDYD VR CC+ A +C KCW M +A+K++D L + F F+ +WV+SGRRGVHCWV DK AR L RSAI L K K + + + + + P + ++ + FEK ++T Y+ E G + L S+ ++ L DD D + L L+ + ++ YPRLDVNVSTG NHLLKSPF +HP TG + VP+++G ++EFD P ++ + EL S Sbjct: 1 MSYNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDEHAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVE--RELVFDIDLTDYDPVRNCCKDATVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAIATRLNLFK---KNGQCEVTEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWLDKEDFITEYK--FMSEVGRDDLRSLSETYKTPQERWNMIRGLFDD--DYRKSLSPKDGLLDFKMQGRDRNYLLYFVLQRCYPRLDVNVSTGTNHLLKSPFCIHPKTGNVAVPLNVGKIEEFDVSKCPRIDHVVEELSS 368
BLAST of DNA primase vs. Ensembl Celegans
Match: T24C4.5 (DNA primase [Source:UniProtKB/TrEMBL;Acc:Q9TZ34]) HSP 1 Score: 184.496 bits (467), Expect = 5.692e-55 Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 1 Query: 37 MSEISVHHDELIKIFYKTIFPSSLFCRWLSYGND--EAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNK 618 MS S+ + + I+YK FP F +WL YG + + F REF+F L DD+++RY S+ DE+ F++ L NP K+DIGAVYN EP N+K+ + V +ELVFDID+TDYD VR CC+ A +C KCW M +A++++D L E F F+ +WV+SGRRGVHCWV DK AR L + RSAI L K + Sbjct: 1 MSYNSIRLPQDLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDEHSFVKALSSTNPEKLDIGAVYNHEPINNKRYTDYQAVE--RELVFDIDLTDYDPVRNCCKDATVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAIATRLNLFKKNGQ 194
BLAST of DNA primase vs. Ensembl Celegans
Match: T24C4.5 (DNA primase [Source:UniProtKB/TrEMBL;Acc:Q9TZ34]) HSP 1 Score: 184.496 bits (467), Expect = 5.692e-55 Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 1 Query: 37 MSEISVHHDELIKIFYKTIFPSSLFCRWLSYGND--EAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNK 618 MS S+ + + I+YK FP F +WL YG + + F REF+F L DD+++RY S+ DE+ F++ L NP K+DIGAVYN EP N+K+ + V +ELVFDID+TDYD VR CC+ A +C KCW M +A++++D L E F F+ +WV+SGRRGVHCWV DK AR L + RSAI L K + Sbjct: 1 MSYNSIRLPQDLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDEHSFVKALSSTNPEKLDIGAVYNHEPINNKRYTDYQAVE--RELVFDIDLTDYDPVRNCCKDATVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAIATRLNLFKKNGQ 194
BLAST of DNA primase vs. Ensembl Celegans
Match: pri-1 (DNA primase small subunit [Source:UniProtKB/Swiss-Prot;Acc:P34471]) HSP 1 Score: 80.1073 bits (196), Expect = 3.701e-18 Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 Query: 946 YPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS 1119 YPRLDVNVSTG NHLLKSPF +HP TG + VP+++G ++EFD P ++ + EL S Sbjct: 18 YPRLDVNVSTGTNHLLKSPFCIHPKTGNVAVPLNVGKIEEFDVSKCPRIDHVVEELSS 75
BLAST of DNA primase vs. Ensembl Celegans
Match: pri-1 (DNA primase small subunit [Source:UniProtKB/Swiss-Prot;Acc:P34471]) HSP 1 Score: 80.1073 bits (196), Expect = 3.701e-18 Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 Query: 946 YPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS 1119 YPRLDVNVSTG NHLLKSPF +HP TG + VP+++G ++EFD P ++ + EL S Sbjct: 18 YPRLDVNVSTGTNHLLKSPFCIHPKTGNVAVPLNVGKIEEFDVSKCPRIDHVVEELSS 75
BLAST of DNA primase vs. Ensembl Fly
Match: DNApol-alpha50 (gene:FBgn0011762 transcript:FBtr0076603) HSP 1 Score: 307.375 bits (786), Expect = 4.885e-101 Identity = 161/412 (39.08%), Postives = 237/412 (57.52%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYV-----KGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTK-------------VIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS-----------------TQDIHSTSFGKYLDIFERFINDL 1188 +++ ++Y+ +FP F RWLSYG+ D F NRE SFTL+DDIY+RYL F + E +E+ +NP KIDIG V + +PKNH+ G P +ELVFDIDMTDYD+VR CC A +C KCW M +A +V+D ALREDFGFE I+W++SGRRG+HCWVCD AR L R A+ YL + GGN + D+ H + +++I++P FE+ + QN KG+ +LL+++ D+ R ++ ++ + D + W S + +Y NS + ++ EI + +YPRLD+NV+ G NHLLK+PF +HP+TG++CVP + +V +FDP VPT+ Q + E+ + +D TS K + +FE F+ L Sbjct: 30 DMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKPKNHR-SIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFAGGNSPR--CSMGDRP-----HHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVTKLLNMVHDDAA--RGELE-SYMQKNLEDGAHSRLVWESFI---KYANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPEDKSRIKDHKKTSMFKGVVVFEEFLRKL 427
BLAST of DNA primase vs. Ensembl Zebrafish
Match: prim1 (DNA primase subunit 1 [Source:ZFIN;Acc:ZDB-GENE-990603-6]) HSP 1 Score: 358.992 bits (920), Expect = 2.989e-121 Identity = 184/408 (45.10%), Postives = 253/408 (62.01%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYG--NDEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTK------VIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTL-------------------------EQTISELRSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP S + RWLSYG + F NREFSFTLKDDIYVRY SF +NE +E+ + PYKIDIGAVY+ P H +G F KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI+++DRALREDFGF +LWVYSGRRGVHCWVCD AR L ARSA+ YL+ VKGG + + + +D +HP I +S+ +++ +F +Y Q+ L ++ ++++L+++P++ K L + + + + +W L ++++ S+ EI +++ YPRLDVNVS GVNHLLKSPFSVHP TGRI VPID+ +D FDPF VPT+ EQ +E R +D TS KY+ + +RF++ + Sbjct: 13 DLLPLYYRRLFPFSQYFRWLSYGGVSKNYFQNREFSFTLKDDIYVRYQSFSSQNELEKEMQKMVPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRRCCSAADICSKCWTLMTIAIRILDRALREDFGFHHLLWVYSGRRGVHCWVCDDAARKLSVAARSAVAEYLSLVKGGEETLRKVVLSDP-----IHPFISQSLSVVEHYFPQYAIVDQDILGNKESVDKVLALLPEDI--------KKDLIEYYQNHKEPMKRWDRLRQLVDHKKSSSKKGGQYYDKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDLKELDTFDPFEVPTISLICRELEKPRADEAEDEDVKDKENEQEAAERRRIRDYKRTSLAKYVKVLDRFLDSM 407
BLAST of DNA primase vs. Ensembl Xenopus
Match: rhagl (Rh associated glycoprotein like [Source:Xenbase;Acc:XB-GENE-5797751]) HSP 1 Score: 340.502 bits (872), Expect = 3.583e-114 Identity = 181/399 (45.36%), Postives = 253/399 (63.41%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKK-KKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL---------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP + RWL+YG F +REFSFTLKDD+YVRY SF +++E +E+ + PYKIDIGAVY+ +P H +G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A++++DRAL EDFGF+ LWVYSGRRGVHCWVCD AR L RSA+ YL+ VKGG + KKV L + +HP I +S+++++ +FEKY Q+ L ++ +++++++P++ + L +L + +V+ C L++ + EI ++F YPRLDVNVS G+NHLLKSPFSVHP TGRI VPID +D+FDPF+VPT+ SEL + T+D TS Y+ +FE+F++ L Sbjct: 13 DLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDVYVRYQSFNNQSELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERSAVAEYLSVVKGGEETIKKVQLSD------PIHPFIGKSLKMVERYFEKYALVDQDILENKQCWDKVVALVPED-------ILLDFLQ-------RLMVQVEIWSCLLDF----NIPKEIMLQFCYPRLDVNVSKGLNHLLKSPFSVHPKTGRISVPIDTKKLDQFDPFSVPTISLICSELDNVCKKEDDQDSSGEGEPEAKKRTRDYKRTSLAPYIKVFEQFLDKL 387
BLAST of DNA primase vs. Ensembl Xenopus
Match: rhagl (Rh associated glycoprotein like [Source:Xenbase;Acc:XB-GENE-5797751]) HSP 1 Score: 340.502 bits (872), Expect = 3.993e-114 Identity = 181/399 (45.36%), Postives = 253/399 (63.41%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKK-KKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL---------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP + RWL+YG F +REFSFTLKDD+YVRY SF +++E +E+ + PYKIDIGAVY+ +P H +G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A++++DRAL EDFGF+ LWVYSGRRGVHCWVCD AR L RSA+ YL+ VKGG + KKV L + +HP I +S+++++ +FEKY Q+ L ++ +++++++P++ + L +L + +V+ C L++ + EI ++F YPRLDVNVS G+NHLLKSPFSVHP TGRI VPID +D+FDPF+VPT+ SEL + T+D TS Y+ +FE+F++ L Sbjct: 14 DLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDVYVRYQSFNNQSELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERSAVAEYLSVVKGGEETIKKVQLSD------PIHPFIGKSLKMVERYFEKYALVDQDILENKQCWDKVVALVPED-------ILLDFLQ-------RLMVQVEIWSCLLDF----NIPKEIMLQFCYPRLDVNVSKGLNHLLKSPFSVHPKTGRISVPIDTKKLDQFDPFSVPTISLICSELDNVCKKEDDQDSSGEGEPEAKKRTRDYKRTSLAPYIKVFEQFLDKL 388
BLAST of DNA primase vs. Ensembl Xenopus
Match: rhagl (Rh associated glycoprotein like [Source:Xenbase;Acc:XB-GENE-5797751]) HSP 1 Score: 335.495 bits (859), Expect = 2.712e-112 Identity = 177/392 (45.15%), Postives = 246/392 (62.76%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRST---------------QDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP + RWL+YG F +REFSFTLKDD+YVRY SF +++E +E+ + PYKIDIGAVY+ +P H +G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A++++DRAL EDFGF+ LWVYSGRRGVHCWVCD AR L RSA+ YL+ VKGG + K +D +HP I +S+++++ +FEKY Q+ L ++ +++++++P++ + L +L + +V + C + EI ++F YPRLDVNVS G+NHLLKSPFSVHP TGRI VPID +D+FDPF+VPT+ SEL + D TS Y+ +FE+F++ L Sbjct: 13 DLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDVYVRYQSFNNQSELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERSAVAEYLSVVKGGEETIKKVQLSDP-----IHPFIGKSLKMVERYFEKYALVDQDILENKQCWDKVVALVPED-------ILLDFLQ-------RLMVIFSVRNCNIP--------KEIMLQFCYPRLDVNVSKGLNHLLKSPFSVHPKTGRISVPIDTKKLDQFDPFSVPTISLICSELDNVCKKEDDQDSSGLCCFSDYKRTSLAPYIKVFEQFLDKL 377
BLAST of DNA primase vs. Ensembl Xenopus
Match: rhagl (Rh associated glycoprotein like [Source:Xenbase;Acc:XB-GENE-5797751]) HSP 1 Score: 333.954 bits (855), Expect = 3.177e-111 Identity = 172/357 (48.18%), Postives = 233/357 (65.27%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLE-----YENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL 1113 +L+ ++Y+ +FP + RWL+YG F +REFSFTLKDD+YVRY SF +++E +E+ + PYKIDIGAVY+ +P H +G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A++++DRAL EDFGF+ LWVYSGRRGVHCWVCD AR L RSA+ YL+ VKGG + K +D +HP I +S+++++ +FEKY Q+ L ++ +++++++P+ E L + S + +W L LE + + EI ++F YPRLDVNVS G+NHLLKSPFSVHP TGRI VPID +D+FDPF+VPT+ SEL Sbjct: 13 DLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDVYVRYQSFNNQSELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERSAVAEYLSVVKGGEETIKKVQLSDP-----IHPFIGKSLKMVERYFEKYALVDQDILENKQCWDKVVALVPEVAREN--------LLREFSKARSSVERWDKLSSCLEATVKDLRRHSNIPKEIMLQFCYPRLDVNVSKGLNHLLKSPFSVHPKTGRISVPIDTKKLDQFDPFSVPTISLICSEL 356
BLAST of DNA primase vs. Ensembl Xenopus
Match: rhagl (Rh associated glycoprotein like [Source:Xenbase;Acc:XB-GENE-5797751]) HSP 1 Score: 331.643 bits (849), Expect = 4.949e-111 Identity = 170/357 (47.62%), Postives = 233/357 (65.27%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLE-----YENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL 1113 +L+ ++Y+ +FP + RWL+YG F +REFSFTLKDD+YVRY SF +++E +E+ + PYKIDIGAVY+ +P H +G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A++++DRAL EDFGF+ LWVYSGRRGVHCWVCD AR L RSA+ YL+ VKGG + K +D +HP I +S+++++ +FEKY Q+ L ++ +++++++P+ E L + S + +W L LE + + EI ++F YPRLDVNVS G+NHLLKSPFSVHP TGRI VPID +D+FDPF+VPT+ ++L Sbjct: 13 DLLPLYYRRLFPFYQYFRWLNYGGVVKNYFHHREFSFTLKDDVYVRYQSFNNQSELEKEMQKMCPYKIDIGAVYSHKPSLHNTVKSGTFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTIAVRILDRALAEDFGFQHRLWVYSGRRGVHCWVCDDSARKLSQAERSAVAEYLSVVKGGEETIKKVQLSDP-----IHPFIGKSLKMVERYFEKYALVDQDILENKQCWDKVVALVPEVAREN--------LLREFSKARSSVERWDKLSSCLEATVKDLRRHSNIPKEIMLQFCYPRLDVNVSKGLNHLLKSPFSVHPKTGRISVPIDTKKLDQFDPFSVPTIRFATNKL 356
BLAST of DNA primase vs. Ensembl Mouse
Match: Prim1 (DNA primase, p49 subunit [Source:MGI Symbol;Acc:MGI:97757]) HSP 1 Score: 349.747 bits (896), Expect = 1.262e-117 Identity = 186/405 (45.93%), Postives = 249/405 (61.48%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVID----------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 EL+K++Y+ +FP + + RWL+YG F +REFSFTLKDDIY+RY SF +++E +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A+++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK N+K +HP + +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S P +W L + NS++ + E+ +++ +PRLDVNVS GVNHLLKSPFSVHP TGRI VPID VD+FDPF VPT+ EL + TS Y+ +FE+F+ +L Sbjct: 11 ELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLNEK-----VHPFVRKSINIIKKYFEEYALVGQDILENKENWDKILALVPETI---HDELQ-RGFQKFHSSPQ----RWEHL---RKVANSSQNMKNDKCGPWLEWEVMLQYCFPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDFHKVDQFDPFTVPTISAICRELDMVSTHEKEKEENEADSKHRVRGYKKTSLAPYVKVFEQFLENL 399
BLAST of DNA primase vs. Ensembl Mouse
Match: Prim1 (DNA primase, p49 subunit [Source:MGI Symbol;Acc:MGI:97757]) HSP 1 Score: 348.977 bits (894), Expect = 1.947e-117 Identity = 186/405 (45.93%), Postives = 249/405 (61.48%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVID----------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 EL+K++Y+ +FP + + RWL+YG F +REFSFTLKDDIY+RY SF +++E +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A+++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK N+K +HP + +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S P +W L + NS++ + E+ +++ +PRLDVNVS GVNHLLKSPFSVHP TGRI VPID VD+FDPF VPT+ EL + TS Y+ +FE+F+ +L Sbjct: 11 ELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLNEK-----VHPFVRKSINIIKKYFEEYALVGQDILENKENWDKILALVPE--TPIHDELQ-RGFQKFHSSPQ----RWEHL---RKVANSSQNMKNDKCGPWLEWEVMLQYCFPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDFHKVDQFDPFTVPTISAICRELDMVSTHEKEKEENEADSKHRVRGYKKTSLAPYVKVFEQFLENL 400
BLAST of DNA primase vs. UniProt/SwissProt
Match: sp|P49642|PRI1_HUMAN (DNA primase small subunit OS=Homo sapiens OX=9606 GN=PRIM1 PE=1 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 1.435e-118 Identity = 189/405 (46.67%), Postives = 251/405 (61.98%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSL-VCQLEYENSTKVID-------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS--------------------TQDIHSTSFGKYLDIFERFINDL 1188 EL+K++Y+ +FP S + RWL+YG F +REFSFTLKDDIY+RY SF ++++ +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK ++K +HP I +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S L +W L Y+N+ K EI +++ +PRLD+NVS G+NHLLKSPFSVHP TGRI VPID+ VD+FDPF VPT+ EL + T+D TS Y+ +FE F+ +L Sbjct: 11 ELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEK-----IHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETI---HDELQQSFQKSHNS-----LQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENL 402
BLAST of DNA primase vs. UniProt/SwissProt
Match: sp|P20664|PRI1_MOUSE (DNA primase small subunit OS=Mus musculus OX=10090 GN=Prim1 PE=1 SV=1) HSP 1 Score: 349.747 bits (896), Expect = 8.825e-117 Identity = 186/405 (45.93%), Postives = 249/405 (61.48%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVID----------EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 EL+K++Y+ +FP + + RWL+YG F +REFSFTLKDDIY+RY SF +++E +E+ + NPYKIDIGAVY+ P H G F + KELVFDIDMTDYDDVR CC ADIC KCW LMT+A+++IDRAL+EDFGF+ LWVYSGRRGVHCWVCD+ R L RS IV YL+ VKGG KK N+K +HP + +SI IIK +FE+Y Q+ L ++ +++L+++P+ D ++ + S P +W L + NS++ + E+ +++ +PRLDVNVS GVNHLLKSPFSVHP TGRI VPID VD+FDPF VPT+ EL + TS Y+ +FE+F+ +L Sbjct: 11 ELLKLYYRRLFPYAQYYRWLNYGGVTKNYFQHREFSFTLKDDIYIRYQSFNNQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLNEK-----VHPFVRKSINIIKKYFEEYALVGQDILENKENWDKILALVPETI---HDELQ-RGFQKFHSSPQ----RWEHL---RKVANSSQNMKNDKCGPWLEWEVMLQYCFPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDFHKVDQFDPFTVPTISAICRELDMVSTHEKEKEENEADSKHRVRGYKKTSLAPYVKVFEQFLENL 399
BLAST of DNA primase vs. UniProt/SwissProt
Match: sp|Q24317|PRI1_DROME (DNA primase small subunit OS=Drosophila melanogaster OX=7227 GN=DNApol-alpha50 PE=1 SV=2) HSP 1 Score: 307.375 bits (786), Expect = 4.897e-100 Identity = 161/412 (39.08%), Postives = 237/412 (57.52%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYV-----KGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTK-------------VIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRS-----------------TQDIHSTSFGKYLDIFERFINDL 1188 +++ ++Y+ +FP F RWLSYG+ D F NRE SFTL+DDIY+RYL F + E +E+ +NP KIDIG V + +PKNH+ G P +ELVFDIDMTDYD+VR CC A +C KCW M +A +V+D ALREDFGFE I+W++SGRRG+HCWVCD AR L R A+ YL + GGN + D+ H + +++I++P FE+ + QN KG+ +LL+++ D+ R ++ ++ + D + W S + +Y NS + ++ EI + +YPRLD+NV+ G NHLLK+PF +HP+TG++CVP + +V +FDP VPT+ Q + E+ + +D TS K + +FE F+ L Sbjct: 30 DMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQAELEKEICSRNPIKIDIGPVMHSKPKNHR-SIPGGLTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAEYLNIITYASFAGGNSPR--CSMGDRP-----HHSLKRALKIVEPMFEEIVLEDQNLFGTPKGVTKLLNMVHDDAA--RGELE-SYMQKNLEDGAHSRLVWESFI---KYANSMRTSTTSAWSRKLKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVCVPFSVSAVAKFDPTTVPTITQLLHEINAFDDKSKSYMEAPEDKSRIKDHKKTSMFKGVVVFEEFLRKL 427
BLAST of DNA primase vs. UniProt/SwissProt
Match: sp|O14215|PRI1_SCHPO (DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pri1 PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 8.469e-86 Identity = 154/362 (42.54%), Postives = 213/362 (58.84%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYG----NDEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYEN----STKVI----DEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL 1113 E + +Y+ +FP +WL++G ND F +REF+FTL +D Y+RYLSF + E +E + P + ++G VY+ P++ K F P KELVFDIDMTDYDDVR CC K +IC+KCWP +T+A++V+D EDFGF+ ILWVYSGRRG+H W+CD+ A L +R I YL V GN + V L N+ K R LHPH+ S+ I+K F K + Q+ ++G LL ++ + A++ KW D + KW + L + S VI +I + ++YPRLDV VS +NHLLKSPF VHP T R+CVPIDI +D F+P VPT+ + EL Sbjct: 33 ETMIQYYRHLFPWKYLFQWLNHGPVVTND--FAHREFAFTLPNDAYIRYLSFSNWEELKKEALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYLQVVV-GNPQGGVRLINNLK--RPLHPHLTRSLNILKSAFVKIVLEDQDPWASKEGAENLLKLL--PDKDLASALRKKWEVDPERSSKN---KWSDIDTVLASGSIASISPSVIAIAKQDIVLTYLYPRLDVEVSRHLNHLLKSPFCVHPGTSRVCVPIDIERMDSFNPLKVPTVNDLLQEL 384
BLAST of DNA primase vs. UniProt/SwissProt
Match: sp|Q25998|PRI1_PLAFK (DNA primase small subunit OS=Plasmodium falciparum (isolate K1 / Thailand) OX=5839 PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.454e-82 Identity = 158/417 (37.89%), Postives = 229/417 (54.92%), Query Frame = 1 Query: 52 VHHDELIKIFYKTIFPSSLFCRWLSYGND-----------EAFCNREFSFTLK------DDIYVRYLSFKDENEFIEELIRK-NPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGN-KKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRD---AMKL----KWLNDDQSDPTQCLVKWRSLVCQLEYENSTK------------VIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRSTQDIH-----STSFGKYLDIFER 1173 V+ ++LI +Y+++ P + WL+Y ND F REFSFT K ++IY+R+LSF + EF +L+ P K DIGA+YN P + K F+P KEL+FDIDM DYDD+R CC +CK CW +TVAI ++D ALREDF FE ILWVYSGRRG+HCWV D+ R DAR+A+ YL + G + KKKKV++ W ++ +P + +I +F+ + + +L+ +P + D AMKL +++N++ + + K+ S+ L N K + EI F YPRLD+NVS +NHLLKSPF +H STGR+CVP+DI +++ F+P +VPTL+ + ++ H TS Y+D F R Sbjct: 14 VNENDLI-FYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSFTCKKSDQGKEEIYIRWLSFSNPEEFKNKLLSDLVPIKFDIGAIYNF-PVSQKDQKGDIFLPVQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSGRRGIHCWVADESCRYYTTDARAALADYLNILSGSDTKKKKVSI-----WGKDKYPMFERAFDICYKYFDVLMEEQDFFKKGSPHVQKLIDYLPYASGKVTDPLKAMKLNELKEYINNNNFNSREIFEKFSSIYNFLTPSNYFKRKNVSGNINMPSFVKEIVFHFTYPRLDINVSKEINHLLKSPFCIHNSTGRVCVPLDIKNINNFNPQSVPTLKLLREQFDDPKNSHIEAENRTSLKPYIDYFRR 423
BLAST of DNA primase vs. TrEMBL
Match: A0A210Q007 (DNA primase OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT24397 PE=3 SV=1) HSP 1 Score: 372.089 bits (954), Expect = 3.369e-123 Identity = 189/392 (48.21%), Postives = 258/392 (65.82%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGNDEA--FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKK-KKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVC--QLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRST------------QDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP + RWL+YG F NREFSFTLKDD+Y+RY SF D+ E +E+ ++ PYKIDIGAV++ PK+HK F + KELVFDIDMTDYDDVR CC ADIC CWPLM +AIK+IDRALR+DFGF+ +LWVYSGRRGVHCWVCD+ AR L R+AI YL+ VKGG ++ KKVTL + +HP I +SI+I++ HF Y Q+ L E+ ++L+++PD+ R ++ + S +++ R C + ++ S +++EI +++ YPRLDVNVS GVNHLLKSPF +HP TGR+CVPIDI V++FDP VPT+ Q + EL T +D TS G+YL IF++F+ L Sbjct: 16 DLLPMYYRKLFPYGPYFRWLNYGGAPKSYFTNREFSFTLKDDVYIRYQSFSDKQEMEKEIQKRCPYKIDIGAVFSHRPKDHKTVKAAAFQAQEKELVFDIDMTDYDDVRSCCSGADICNLCWPLMQIAIKIIDRALRDDFGFKHMLWVYSGRRGVHCWVCDEVARKLSAQGRTAIAEYLSVVKGGEQQTKKVTLDD------PIHPSIRQSIDIVRQHFHDYSIKKQDFLGDEEKQKKVLALVPDDVL--RKTLEGDFEMGSNSGNWWAIIEKREKDCVSKGSFKASHHIVEEIMLQYCYPRLDVNVSKGVNHLLKSPFCIHPKTGRVCVPIDIEHVEDFDPMAVPTISQILDELNQTSAAAADDSGKKVKDYKKTSMGEYLRIFDKFLKGL 399
BLAST of DNA primase vs. TrEMBL
Match: A0A1S3HJ03 (DNA primase OS=Lingula unguis OX=7574 GN=LOC106155693 PE=3 SV=1) HSP 1 Score: 370.548 bits (950), Expect = 1.596e-122 Identity = 188/404 (46.53%), Postives = 260/404 (64.36%), Query Frame = 1 Query: 37 MSEISVHHD-----ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGG-NKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL------------RSTQDIHSTSFGKYLDIFERFINDL 1188 M+ H+D + + I+YK +FP L+ +WL+YG F NREFSFTLKDD+YVRY SF D+ + +E+ ++ PYKIDIGAV+ PK+HK F + KELVFDIDMTDYD+VR CC ADIC KCWPLM +A+K+ID ALREDFGFE +LWVYSGRRG+HCWVCD+ AR L +AR+AI YL+ VKGG N+ KK TLY+D ++HP + +I+I++ HF+ Y Q+ E+ ++L+++PD+ + K + + S ++K R + + + S V +EI +++ YPRLDVNVS G+NHLLKSPF VHP TGR+CV +D +D F+PF VPTL Q EL + +D TS +Y +IF++F++ L Sbjct: 1 MTNEQTHYDPACLPDFLPIYYKRLFPYGLYYQWLNYGGVPKTYFTNREFSFTLKDDVYVRYQSFADQQDMEKEIQKRCPYKIDIGAVFTHRPKDHKTVKAAAFQAQEKELVFDIDMTDYDEVRSCCSGADICPKCWPLMIIAVKIIDTALREDFGFEHLLWVYSGRRGIHCWVCDEQARKLSQNARTAIAEYLSVVKGGENQTKKCTLYDD-----SIHPSVRRAIDIVEDHFDDYAIRKQDFAGSEEKWGKVLALVPDDAVRSQVLEDCKEVKAESSRARWAILKKRQQDFKDKCKKSWCVTEEIMLQYCYPRLDVNVSKGINHLLKSPFCVHPKTGRVCVSMDPKKIDSFNPFKVPTLSQLCDELNQLENKSEDDPKKRVKDYKRTSLKEYAEIFDKFVHKL 399
BLAST of DNA primase vs. TrEMBL
Match: B3RZA4 (DNA primase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_26575 PE=3 SV=1) HSP 1 Score: 368.237 bits (944), Expect = 6.331e-122 Identity = 189/380 (49.74%), Postives = 248/380 (65.26%), Query Frame = 1 Query: 34 NMSEISVHHD-----ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIP------DECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYE-----NS--TKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL 1113 N S +SV +D +L+ ++YK +FP L+ +WLSYGN F NREFSFTLKDDIYVRYLSF D+NE +E+ +++PYKID+GAVY+ PK+ F PE KELVFDIDMTDYD++R CC A+IC KCWP MTVA+K++D ALREDFGF +LWVYSGRRG+HCWVCD AR L ARSAI YLT +KGG K + ++ + LHP I +++ I+ +FE L QN L E+ N++L++IP D+ Y ++ +W N S L KW L ++E + NS T + EI +++ YPRLD+NVS G+NHLLKSPF +HP TGR+CVPI +D FDPF+VP + SEL Sbjct: 7 NTSTLSVKYDLTDLPQLMAVYYKRLFPYQLYYKWLSYGNVSKNYFANREFSFTLKDDIYVRYLSFSDKNEMQKEIQKRSPYKIDLGAVYSFRPKDRNMIKNSSFQPEEKELVFDIDMTDYDEIRSCCSGAEICSKCWPFMTVAMKILDAALREDFGFHHLLWVYSGRRGIHCWVCDAAARKLSQSARSAIAEYLTIIKGGEGHVKRVHFKNQAY---LHPSIQRALKTIESYFEDLLLKKQNILESEESSNKVLALIPDKNILKDQIRFYFFSLSEEWNNSGLSS----LQKWSLLKQKIEKDIVSTKNSVLTHCVAEIQLQYTYPRLDINVSKGINHLLKSPFCIHPKTGRVCVPIPATDIDNFDPFSVPNICHLCSEL 379
BLAST of DNA primase vs. TrEMBL
Match: A0A3B4VJW6 (DNA primase OS=Seriola dumerili OX=41447 PE=3 SV=1) HSP 1 Score: 369.007 bits (946), Expect = 7.561e-122 Identity = 185/401 (46.13%), Postives = 254/401 (63.34%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGNDEA--FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTL------------------------EQTISELRSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP S + RWL+YG + F NREFSFTLKDDIYVRY SF +NE +E+ + NPYKIDIGA+Y+ P H +G F KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI ++DRALREDFGF+ +LWVYSGRRGVHCWVCD+ AR L ARSAI YL+ VKGG + K + D +HP I ES+ +++ +F +Y Q L +++ ++++L+++P++ R ++ + N+ + + LVK ++ Q + EI +++ YPRLDVNVS GVNHLLKSPFSVHP TGRI VP+D+ +D FDPF VPT+ E+ +E R +D TS KY+ F++F++ + Sbjct: 13 DLLPLYYRRLFPFSQYYRWLNYGGVQKNYFQNREFSFTLKDDIYVRYQSFTTQNELEKEMQKMNPYKIDIGAIYSHRPNQHNTVKSGTFQALEKELVFDIDMTDYDDVRSCCSAADICSKCWTLMTIAIHILDRALREDFGFQHLLWVYSGRRGVHCWVCDEAARKLSVAARSAIAEYLSLVKGGEETVKKVVLTDP-----IHPSIRESLSVVERYFSQYALHEQEILGRKESVDKVLALVPEDV---RKDLQQSFQNEKKPETRWKLVKDQATRKQATAKKGQHFEKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPMDLKELDTFDPFAVPTISMICEELDRPRTEEESEDTKEKENEKDAAEKRKIRDYKRTSLAKYVKYFDQFLDGM 405
BLAST of DNA primase vs. TrEMBL
Match: A0A556U2J1 (DNA primase OS=Bagarius yarrelli OX=175774 GN=Baya_7786 PE=3 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 2.440e-121 Identity = 190/407 (46.68%), Postives = 260/407 (63.88%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGNDEA--FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSL---VCQLEYENSTKVID----EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTL-----------------------EQTISELRSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP S + RWLSYG F NREFSFTLKDDIYVRY SF ++E +E+ + NPYKIDIGAVY+ P H +G F KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI+++DRALR+DFGF+ +LWVYSGRRGVHCWVCD+ AR L ARSA+ YL+ VKGG + K + +D +HP I +S+ +++ +F +Y Q+ L+ + ++++LS++PD+ Y+ ++K + LN Q++ + +W L Q + +S K EI +++ YPRLDVNVS GVNHLLKSPFSVHP TGRI VPID+ ++D+FDPF VPT+ E E R +D TS KY+ +F+ F++ + Sbjct: 13 DLLPLYYRRLFPYSQYFRWLSYGGASKNYFQNREFSFTLKDDIYVRYQSFSTQSELEKEMQKMNPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRSCCSAADICSKCWTLMTIAIRILDRALRDDFGFQHLLWVYSGRRGVHCWVCDEAARKLSVAARSAVAEYLSLVKGGEETVKKVVLSDP-----IHPFISQSLIVVEHYFPQYAVVEQDLLSSKASVDKVLSLVPDDILHYKISVK-ELLNIYQTEKNP-MKRWEQLCRYAVQQKRTSSKKGAQYFDKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDLKNLDKFDPFEVPTISLICEELDKPLTAEEEDVKDKESETESGERRKIRDYKHTSLAKYVKLFDHFLDAM 412
BLAST of DNA primase vs. Ensembl Cavefish
Match: prim1 (DNA primase subunit 1 [Source:NCBI gene;Acc:103027008]) HSP 1 Score: 367.081 bits (941), Expect = 1.703e-124 Identity = 189/405 (46.67%), Postives = 260/405 (64.20%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQ--LEYENSTKVID-EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL-------------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP S + RWLSYG F NREFSFTLKDDIYVRY SF +NE +E+ + NPYKIDIGAVY+ P H +G F KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI+++DRALREDFGF+ +LWVYSGRRGVHCWVCD+ AR L ARSA+ YL+ VKGG + K + +D +HP I +S+ +++ +F +Y Q L+ ++G++++L+++P++ R + L + + +PT+ + ++LV Q + + D EI +++ YPRLDVNVS GVNHLLKSPFSVHP TGRI VPID+ ++D+FDPF VPT+ EL R +D TS KY+ +F++F++ + Sbjct: 13 DLLPLYYRRLFPFSQYYRWLSYGGVTKNYFQNREFSFTLKDDIYVRYQSFSTQNELEKEMQKMNPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRSCCSAADICSKCWTLMTIAIRILDRALREDFGFQHLLWVYSGRRGVHCWVCDEAARKLSVAARSAVAEYLSLVKGGEETVKKVVLSDP-----IHPFISQSLSVVEHYFLQYAIVGQELLSSKEGVDKVLNLLPEDV---RKDLLLHY--QSEKNPTKRWERLKTLVHQKRATSKKGGQYFDKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDLRNLDKFDPFEVPTISLICEELDKPRPDEEEEDDTKDKENEIEAGERRKIRDFKRTSLAKYIKLFDQFLDSV 407
BLAST of DNA primase vs. Ensembl Cavefish
Match: prim1 (DNA primase subunit 1 [Source:NCBI gene;Acc:103027008]) HSP 1 Score: 347.821 bits (891), Expect = 1.933e-117 Identity = 178/376 (47.34%), Postives = 242/376 (64.36%), Query Frame = 1 Query: 145 FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQ--LEYENSTKVID-EIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL-------------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 F NREFSFTLKDDIYVRY SF +NE +E+ + NPYKIDIGAVY+ P H +G F KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI+++DRALREDFGF+ +LWVYSGRRGVHCWVCD+ AR L ARSA+ YL+ VKGG + K + +D +HP I +S+ +++ +F +Y Q L+ ++G++++L+++P++ R + L + + +PT+ + ++LV Q + + D EI +++ YPRLDVNVS GVNHLLKSPFSVHP TGRI VPID+ ++D+FDPF VPT+ EL R +D TS KY+ +F++F++ + Sbjct: 11 FQNREFSFTLKDDIYVRYQSFSTQNELEKEMQKMNPYKIDIGAVYSHRPSQHNTVKSGTFQALEKELVFDIDMTDYDDVRSCCSAADICSKCWTLMTIAIRILDRALREDFGFQHLLWVYSGRRGVHCWVCDEAARKLSVAARSAVAEYLSLVKGGEETVKKVVLSDP-----IHPFISQSLSVVEHYFLQYAIVGQELLSSKEGVDKVLNLLPEDV---RKDLLLHY--QSEKNPTKRWERLKTLVHQKRATSKKGGQYFDKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDLRNLDKFDPFEVPTISLICEELDKPRPDEEEEDDTKDKENEIEAGERRKIRDFKRTSLAKYIKLFDQFLDSV 376
BLAST of DNA primase vs. Ensembl Sea Lamprey
Match: prim1 (DNA primase subunit 1 [Source:ZFIN;Acc:ZDB-GENE-990603-6]) HSP 1 Score: 362.844 bits (930), Expect = 2.056e-123 Identity = 194/423 (45.86%), Postives = 253/423 (59.81%), Query Frame = 1 Query: 31 YNMSEISVHHDELIKIFYKTIFPSSLFCRWLSYGNDEA--FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKK-KKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYEN----STKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL------------------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 Y+ SE+ +L+ ++Y+ +FP + RWL+YG E F NREFSFTLKDDIYVRY SF+++ + +E+ + PYKIDIGAV++ +P H G F KELVFDIDMTDYDDVR CC ADIC CWPLMT+AIKVIDRAL EDFGF+ LWVYSGRRGVHCWVCD AR L ARSAI YLT VKGG KKV L + +LHP I ++++++ +FE+Y T Q+ L EK ++L+++PD E L D +++W + + + + E+ ++F YPRLDVNVS G+NHLLKSPFS+HP TGR+CVPID+ VDEFDPF VPT+ Q EL + +D TS + +FERF++ L Sbjct: 6 YDSSELP----DLLAVYYRRLFPYGPYYRWLNYGGVEKNYFVNREFSFTLKDDIYVRYQSFQNQADMEKEIQKCVPYKIDIGAVFSHKPNQHNSVKMGSFQALEKELVFDIDMTDYDDVRSCCSSADICPNCWPLMTIAIKVIDRALSEDFGFDHRLWVYSGRRGVHCWVCDIAARKLSQPARSAIAEYLTLVKGGEGMIKKVNLGENN----SLHPSISAAVQVVERYFEEYALTKQDILGTEKAWEKVLALLPDSIREE--------LRKDLLIQPNSVIRWEVIKQKFSKGGGNITARHYVSEVMLQFCYPRLDVNVSKGINHLLKSPFSIHPKTGRVCVPIDVARVDEFDPFTVPTISQICRELDRAVEPVTSPGQSKLDVERAKDGGTGELAAKRRRDYKRTSMAASVRVFERFVDKL 412
BLAST of DNA primase vs. Ensembl Yeast
Match: PRI1 (Subunit of DNA primase; DNA primase is required for DNA synthesis and double-strand break repair [Source:SGD;Acc:S000001447]) HSP 1 Score: 229.565 bits (584), Expect = 6.116e-72 Identity = 124/384 (32.29%), Postives = 203/384 (52.86%), Query Frame = 1 Query: 70 IKIFYKTIFPSSLFCRWLSYGNDEA--FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNAL-NQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQL--EYENSTKVI------DEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRSTQDIHSTSFGKYLDIFERFINDL 1188 ++ +YK+++P WL++ + NREF+ + Y RY SF +F ++ + NP + +IGA+YN P+ KELVFDIDM DYD R CC A +C KCW +++A+K+ + ALREDFG++ +WV+SGRRG HCWV DK AR L R ++ Y+ ++ N K++ L R HPH+ S+E +KP F + QN + + I LL + D+ + D++K WL++ + + + L + + +I +++ + +YP+LDV V+ HLLK+PF +HP+TG +CVPID + F P P L +E+ D+ T+ +++ F+ +++ L Sbjct: 15 MEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALK------RPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDK--QLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPID----ESFAPEKAPKLIDLQTEMEKNNDVSLTALQPFINQFQAYVSSL 386
BLAST of DNA primase vs. Ensembl Nematostella
Match: EDO37404 (DNA primase [Source:UniProtKB/TrEMBL;Acc:A7SFT3]) HSP 1 Score: 329.331 bits (843), Expect = 2.734e-110 Identity = 173/397 (43.58%), Postives = 244/397 (61.46%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGN--DEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGG-NKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL-------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 EL++ +YK +FP L+ +WLSYG+ F NREFSFTLKDD+Y+RY SF + E +E+ ++NP+KIDIGAV++ +PK+HK F KELVFDIDMTDYD++R CC+ A+IC KCW M +AIKV+D AL+EDFGF+ LWVYSGRRGVHCWVCD+ AR L RSA+ YLT +KGG N+ KKV + HP I S+ ++K +F + Q L+ ++ + LL+++ + + +W + V S +++ S +VIDEI +++ YPRLDVNV+ G+NHLLKSPF +HP TGR+CVPI++ + D FDPF VPT+ Q ++++ R + TS L +F +F+ L Sbjct: 21 ELLQQYYKWLFPYKLYHQWLSYGDVPKTYFPNREFSFTLKDDVYLRYQSFASQEEMEKEIQKRNPHKIDIGAVFSHKPKDHKMVKAASFQALEKELVFDIDMTDYDEIRTCCKGAEICLKCWKFMVIAIKVLDLALKEDFGFKHRLWVYSGRRGVHCWVCDETARKLSQSGRSAVAEYLTIIKGGENQAKKVNIREP------YHPFIKRSLSLVKKYFNDIVLDGQEILSSKETWDPLLALLNKSWSSCKKSSSERW--------EELTVMCTSFFQKMQ---SMEVIDEIMLQYTYPRLDVNVTKGLNHLLKSPFCIHPKTGRVCVPIEVATADLFDPFAVPTISQLLNQIDEYDKKHPNDNSDEDIAGKRKIRAFQKTSLMAGLSVFHKFLKLL 400
BLAST of DNA primase vs. Ensembl Medaka
Match: prim1 (DNA primase subunit 1 [Source:NCBI gene;Acc:101156974]) HSP 1 Score: 360.147 bits (923), Expect = 1.090e-121 Identity = 184/402 (45.77%), Postives = 250/402 (62.19%), Query Frame = 1 Query: 64 ELIKIFYKTIFPSSLFCRWLSYGNDEA--FCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISEL-------------------------RSTQDIHSTSFGKYLDIFERFINDL 1188 +L+ ++Y+ +FP S + RWL+YG + F NREFSFTLKDDIYVRY SF +NE +E+ + NPYKIDIGAVY+ P H +G F KELVFDIDMTDYDDVR CC ADIC KCW LMT+AI ++DRALR+DFGF+ +LWVYSGRRGVHCWVCD+ AR L RSA+ YL+ VKGG + K + D +HP I S+E+++ +F +Y Q+ L +++ ++++L+++P++ R+ ++ K Q + ++K + Q + EI +++ YPRLDVNVS GVNHLLKSPFSVHP TGRI VPID+ VD FDPF VPT+ + EL R +D TS KY+ F+ F++ + Sbjct: 15 DLLPLYYRRLFPFSQYYRWLNYGGVQKNYFQNREFSFTLKDDIYVRYQSFSTQNELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKSGSFQALEKELVFDIDMTDYDDVRTCCSAADICSKCWTLMTIAIHILDRALRDDFGFQHLLWVYSGRRGVHCWVCDEAARKLSAAGRSAVAEYLSLVKGGEETVKKVVLTDP-----IHPFISASLEVVEKYFLEYAVQDQDILGRKECVDKVLALVPEDV---RNELQTKMKGVKQPEKLWKMIKNEAKNKQGTVKKGQHFEKEIMLQYCYPRLDVNVSKGVNHLLKSPFSVHPKTGRISVPIDLKEVDSFDPFVVPTISRICEELDRPRTEEEKSEESQDKENEKDAVETRKMRDYKRTSLAKYVKYFDSFLDGM 408
BLAST of DNA primase vs. Planmine SMEST
Match: SMESG000070103.1 (SMESG000070103.1) HSP 1 Score: 792.727 bits (2046), Expect = 0.000e+0 Identity = 383/384 (99.74%), Postives = 383/384 (99.74%), Query Frame = 1 Query: 37 MSEISVHHDELIKIFYKTIFPSSLFCRWLSYGNDEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKPHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRSTQDIHSTSFGKYLDIFERFINDL 1188 MSEISVHHDELIKIFYKTIFPSSLFCRWLSYGNDEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIK HFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRSTQDIHSTSFGKYLDIFERFINDL Sbjct: 1 MSEISVHHDELIKIFYKTIFPSSLFCRWLSYGNDEAFCNREFSFTLKDDIYVRYLSFKDENEFIEELIRKNPYKIDIGAVYNIEPKNHKKGSTGWFVPEWKELVFDIDMTDYDDVRFCCEKADICKKCWPLMTVAIKVIDRALREDFGFEKILWVYSGRRGVHCWVCDKGARDLVFDARSAIVGYLTYVKGGNKKKKVTLYNDKKWLRNLHPHIVESIEIIKSHFEKYLTTYQNALNQEKGINRLLSIIPDECCEYRDAMKLKWLNDDQSDPTQCLVKWRSLVCQLEYENSTKVIDEIYMEFMYPRLDVNVSTGVNHLLKSPFSVHPSTGRICVPIDIGSVDEFDPFNVPTLEQTISELRSTQDIHSTSFGKYLDIFERFINDL 384 The following BLAST results are available for this feature:
BLAST of DNA primase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA primase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of DNA primase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of DNA primase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of DNA primase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of DNA primase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of DNA primase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA primase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA primase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of DNA primase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of DNA primase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of DNA primase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of DNA primase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of DNA primase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010424 ID=SMED30010424|Name=DNA primase|organism=Schmidtea mediterranea sexual|type=transcript|length=1202bpback to top protein sequence of SMED30010424-orf-1 >SMED30010424-orf-1 ID=SMED30010424-orf-1|Name=SMED30010424-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=385bp MSEISVHHDELIKIFYKTIFPSSLFCRWLSYGNDEAFCNREFSFTLKDDIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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