pmp-10

Overview
Namepmp-10 (AIX99543.1)
Smed IDSMED30010415
Length (bp)1541
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of pmp-10 (SMED30010415) t-SNE clustered cells

Violin plots show distribution of expression levels for pmp-10 (SMED30010415) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of pmp-10 (SMED30010415) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for pmp-10 (SMED30010415) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30010415

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30010415h1SMcG0013407 Contig9294newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013407 Contig9294uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30010415h1SMcG0013407 dd_Smed_v4_343_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30010415h1SMcG0013407 dd_Smed_v4_343_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30010415h1SMcG0013407 dd_Smed_v4_343_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30010415h1SMcG0013407 dd_Smed_v4_343_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013406 Contig21199newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013406 Contig21199uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013407 Contig30443uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013407 Contig30443newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013407 Contig21199newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010415h1SMcG0013407 Contig21199uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
tail regionSMED30010415h1SMcG0013407 dd_Smed_v6_343_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Category 3 cellSMED30010415h1SMcG0013407 dd_Smed_v6_343_0dd_Smed_v6PMID:29674432
Plass et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 3 cellSMED30010415h1SMcG0013407 dd_Smed_v4_343_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of pmp-10 vs. TrEMBL
Match: A0A0A1CQX9 (Pmp-10 (Fragment) OS=Schmidtea mediterranea OX=79327 GN=pmp-10 PE=2 SV=1)

HSP 1 Score: 520.005 bits (1338), Expect = 0.000e+0
Identity = 260/262 (99.24%), Postives = 260/262 (99.24%), Query Frame = 1
Query:  298 NRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNDENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKKPTRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSN 1083
            NRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFN ENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKK TRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSN
Sbjct:    1 NRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNVENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKKTTRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSN 262          
BLAST of pmp-10 vs. Planmine SMEST
Match: SMESG000068428.1 (SMESG000068428.1)

HSP 1 Score: 630.943 bits (1626), Expect = 0.000e+0
Identity = 335/345 (97.10%), Postives = 340/345 (98.55%), Query Frame = 1
Query:  244 MKPEXXXXXXXXXYEIHQNRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNDENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKKPTRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSNXXXXXXXXXXXXXRGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNXXXXXXXXDFIQR 1278
            MKPE LLLFIFIFYEIHQNRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFN ENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKK TRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSNELDDGDEEEDILERGLT+RKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNEF+ E E+DF++R
Sbjct:    1 MKPEFLLLFIFIFYEIHQNRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNVENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKKTTRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSNELDDGDEEEDILERGLTQRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNEFDEEAEDDFMKR 345          

HSP 2 Score: 96.6709 bits (239), Expect = 1.028e-20
Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 1
Query:  883 KSLTNE---KDKMEYVQKRLQTKKPLKKPTRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSNXXXXXXXXXXXXXRGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISN 1239
            +S++NE   +D+  ++++ + +K P  K  R   +  KV T+KP   T K++ V+ TKS++KS +TP S+ELDDGDEEEDILERG TKRKSTTVKPATHTKK GTIKPIIPTKKVGKRSISN
Sbjct:  430 RSISNEFEAEDEDNFMKRAVTSKHPKTK-KRNKPVTSKVLTVKPTKYTPKTVTVKPTKSISKSTQTPRSDELDDGDEEEDILERGFTKRKSTTVKPATHTKKVGTIKPIIPTKKVGKRSISN 550          

HSP 3 Score: 96.6709 bits (239), Expect = 1.028e-20
Identity = 74/122 (60.66%), Postives = 94/122 (77.05%), Query Frame = 1
Query:  883 KSLTNE---KDKMEYVQKRLQTKKPLKKPTRKHSLIIKVSTMKPRTQTTKSIKVRSTKSVNKSEKTPSSNXXXXXXXXXXXXXRGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISN 1239
            +S++NE   +D+  ++++ + +K P  K  R   +  KV T+KP   T K++ V+ TKS++KS +TP S+ELDDGDEEEDILERG TKRKSTTVKPATHTKK GTIKPIIPTKKVGKRSISN
Sbjct:  852 RSISNEFEAEDEDNFMKRAVTSKHPKTK-KRNKPVTSKVLTVKPTKYTPKTVTVKPTKSISKSTQTPRSDELDDGDEEEDILERGFTKRKSTTVKPATHTKKVGTIKPIIPTKKVGKRSISN 972          

HSP 4 Score: 81.2629 bits (199), Expect = 6.844e-16
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1
Query: 1123 RGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNXXXXXXXXDFIQRM 1281
            R +TK+KSTTVKPATHTKK GTIKPIIPTKKVGKRSISNEFEA+EEEDF+QRM
Sbjct: 1087 RAVTKKKSTTVKPATHTKKVGTIKPIIPTKKVGKRSISNEFEAQEEEDFLQRM 1139          

HSP 5 Score: 74.3294 bits (181), Expect = 1.074e-13
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1
Query: 1123 RGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNXXXXXXXXDFIQR 1278
            R +TK+K+TTVKPATHTKK GTIKPIIPTKKVGKRSISNEF+ E E+DF++R
Sbjct:  665 RAVTKKKNTTVKPATHTKKVGTIKPIIPTKKVGKRSISNEFDEEAEDDFMKR 716          

HSP 6 Score: 74.3294 bits (181), Expect = 1.074e-13
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1
Query: 1123 RGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNXXXXXXXXDFIQR 1278
            R +TK+K+TTVKPATHTKK GTIKPIIPTKKVGKRSISNEF+ E E+DF++R
Sbjct:  716 RAVTKKKNTTVKPATHTKKVGTIKPIIPTKKVGKRSISNEFDEEAEDDFMKR 767          

HSP 7 Score: 73.9442 bits (180), Expect = 1.602e-13
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 1
Query: 1123 RGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNXXXXXXXXDFIQR 1278
            R +TK+KSTTVKPATHTKK GTIKPIIPTKKVGKRSISNEFEAE+E++F++R
Sbjct:  818 RAVTKKKSTTVKPATHTKKVGTIKPIIPTKKVGKRSISNEFEAEDEDNFMKR 869          

HSP 8 Score: 72.0182 bits (175), Expect = 5.403e-13
Identity = 42/52 (80.77%), Postives = 50/52 (96.15%), Query Frame = 1
Query: 1123 RGLTKRKSTTVKPATHTKKAGTIKPIIPTKKVGKRSISNXXXXXXXXDFIQR 1278
            R +TK+K+TTVKPATHTKK GTIKPIIPTKKVGKRSISNEFEAE+E++F++R
Sbjct:  396 RAVTKKKNTTVKPATHTKKVGTIKPIIPTKKVGKRSISNEFEAEDEDNFMKR 447          
BLAST of pmp-10 vs. Planmine SMEST
Match: SMESG000068743.1 (SMESG000068743.1)

HSP 1 Score: 261.151 bits (666), Expect = 7.016e-76
Identity = 122/205 (59.51%), Postives = 153/205 (74.63%), Query Frame = 1
Query:  289 IHQNRCEIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATSEGFFNDENKIQYLKSLTNEK 903
            I ++ C+IG+L+VK AK+LI+N+ QR QCN LIPE  SCD AY+T+D YC+ KA+ ID  C+  F KL E CN AEN IK  C  K GY+TA CGR F+RLD VCRI S+T SR CTK YRKMDN+C KKY KI +KCKRI+ RYKDFCE+ ++ NYWNE YK GEFKI+ K ++IE +KN+A  E FF++ N  +Y+K L NEK
Sbjct:   16 IQESDCKIGELAVKKAKSLILNKAQREQCNLLIPEADSCDQAYQTVDKYCDEKASSIDKECDISFKKLVEKCNTAENSIKERCQKKNGYVTAECGRLFERLDNVCRIVSSTQSRHCTKLYRKMDNECYKKYSKITLKCKRIFDRYKDFCESDMSPNYWNEAYKDGEFKINEKIIKIESVKNMAEEENFFDEINIKKYVK-LLNEK 219          
BLAST of pmp-10 vs. Planmine SMEST
Match: SMESG000043853.1 (SMESG000043853.1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.095e-23
Identity = 49/152 (32.24%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  307 EIGDLSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYW 762
            EIGDLS+  +++LI  ++    C +L+P   +CD A   +D+YC  +  +   FC  +F K    CNK E KI   C   +G++   CG  FD L  VC++ S   S  C +  ++ +  CN    KI   C+ +Y  Y +FC+  +++ Y+
Sbjct:   22 EIGDLSIHESQSLINFKSTHQTCGNLVPITKTCDKALSIVDDYCYSQLHQTIRFCEHQFQKGVYYCNKTEKKITKTCIRNIGFLNEKCGSFFDSLRIVCQLESDYQSVVCDRLLKQNEKNCNNFKNKILRNCRHVYQHYLNFCDFSISDTYY 173          
BLAST of pmp-10 vs. Planmine SMEST
Match: SMESG000053861.1 (SMESG000053861.1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.297e-18
Identity = 48/138 (34.78%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  370 QCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDR-------LDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGVANNYW 762
            +C DLIP    CD AY T DNYC+R A+ +D  C+  F KLT  CNK E           GYI  +CG++  R       LD  C  +   +S  C+ +Y  M +KC     ++  +C  IY +Y++ CE  +    W
Sbjct:   30 ECEDLIPFAEHCDRAYLTADNYCDRYASHLDKQCDIAFRKLTNGCNKHE-----------GYILQTCGKKGPRCKVMINFLDITCNQACVAISDYCSDEYDYMTDKCEFINNRLEKRCNGIYQQYEETCEKNLDPYNW 156          
BLAST of pmp-10 vs. Planmine SMEST
Match: SMESG000034829.1 (SMESG000034829.1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.432e-13
Identity = 42/143 (29.37%), Postives = 67/143 (46.85%), Query Frame = 1
Query:  319 LSVKIAKALIINRNQRLQCNDLIPEVISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNTKVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKINVKCKRIYYRYKDFCETGV 747
            + V I+ + I   N+  +C +L+ +VISCD  ++ +D YC  K    D  C R++  L   CN    K    CN +    T  C +  DR+D+ C      L   C   YRK+D  CN+   ++  +C  I+  Y   C+  +
Sbjct:    7 IFVWISISTISGNNE--ECQNLLKKVISCDGDWKALDKYCAIKFETHDKVCERRYFYLDTRCNTDYEKYDKVCNYRER--TGKCIKMLDRIDRYCVAKYAILDMNCDSDYRKLDKHCNQGSKELQHRCLAIFSNYHRVCKDEI 145          
The following BLAST results are available for this feature:
BLAST of pmp-10 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0A1CQX90.000e+099.24Pmp-10 (Fragment) OS=Schmidtea mediterranea OX=793... [more]
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BLAST of pmp-10 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of pmp-10 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000068428.11.028e-2097.10SMESG000068428.1[more]
SMESG000068743.17.016e-7659.51SMESG000068743.1[more]
SMESG000043853.15.095e-2332.24SMESG000043853.1[more]
SMESG000053861.15.297e-1834.78SMESG000053861.1[more]
SMESG000034829.14.432e-1329.37SMESG000034829.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30010415
GenBankAIX99543.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010415 ID=SMED30010415|Name=pmp-10|organism=Schmidtea mediterranea sexual|type=transcript|length=1541bp
GTTTTCAAGTTAATCATATTTTCAATTCAGCTCAAAAACAACAAGTTGAT
TTTGTTTATTAGAACCATATTTGTTGAAAATTTAGTCTAATGGAACTACG
CAGAACAAGTAATAAGCGAGGCGTATAATAACCTCCGATAACAACATATC
TATGTAACAAAAAACAATGCAGCATGGTCTAGCCATACAACTCAGAAACA
ATATTTAAACTGTTTGAAAAAAAATTGTTTCGAAAACAAAATTATGAAGC
CAGAATTATTACTATTGTTTATTTTCATATTTTATGAAATTCATCAAAAC
CGATGTGAAATTGGAGATCTCTCGGTAAAGATAGCCAAAGCATTGATCAT
TAATAGAAACCAAAGATTACAATGCAATGATCTAATTCCAGAAGTTATTA
GCTGCGACTCGGCCTATGAAACAATTGATAATTATTGTGAAAGAAAAGCA
ACAGAAATTGATTCTTTTTGCAATAGAAAATTTAGCAAATTAACAGAAAG
CTGTAATAAAGCAGAAAATAAGATAAAACTCGATTGCAATACCAAAGTAG
GCTATATTACAGCAAGCTGCGGAAGAAGGTTCGATAGATTGGACAAAGTG
TGCCGAATATCATCGACAACTCTTTCCAGAAAATGCACTAAAAAATATCG
AAAAATGGATAATAAGTGTAATAAAAAATATGGTAAAATAAATGTTAAGT
GTAAAAGGATATATTACCGATATAAAGATTTCTGTGAAACCGGAGTAGCA
AATAATTATTGGAACGAAAAATATAAGAAAGGAGAATTCAAAATAAGCAG
AAAAAATCTACAAATTGAACAATTAAAAAATATAGCGACATCAGAAGGAT
TTTTCAACGACGAGAATAAAATTCAGTATTTGAAGTCATTAACAAACGAA
AAAGACAAGATGGAATATGTTCAAAAACGATTACAAACTAAAAAACCACT
TAAAAAACCAACCAGAAAACATTCTCTGATTATTAAAGTTAGTACTATGA
AACCTAGAACCCAAACAACTAAATCCATCAAAGTCAGATCAACAAAGTCA
GTAAACAAAAGTGAGAAAACGCCAAGTTCAAATGAATTAGATGATGGTGA
TGAAGAGGAAGACATCTTGGAACGAGGTTTAACCAAAAGGAAGAGTACCA
CTGTTAAACCAGCAACTCATACGAAAAAAGCTGGCACTATTAAACCGATC
ATTCCGACAAAGAAAGTGGGAAAGCGATCGATTTCTAATGAATTTGAAGC
AGAAGAGGAAGAGGATTTCATTCAGAGGATGTAACGAAAAGCAAACCAGC
ATATTATACTAAAAATTTATTAAAAATTTTTGCTTATTTATGTATTAAAT
TTCCAAAGAACTTAGTGAAATTTTATGTTTAGTTTGAATATCAAAAATGT
TGATGTTTTTTTATATCCTTGAATTTTTTATGATGAATGTGCTTTACATG
ATAATTACTTTTGCTAATGGTATTTTTTCAAATGCAATTGGAATTTAAAA
TTTTATTGTATTTTATAATTTAATATATTTTTAAACTTTTG
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protein sequence of SMED30010415-orf-1

>SMED30010415-orf-1 ID=SMED30010415-orf-1|Name=SMED30010415-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=347bp
MKPELLLLFIFIFYEIHQNRCEIGDLSVKIAKALIINRNQRLQCNDLIPE
VISCDSAYETIDNYCERKATEIDSFCNRKFSKLTESCNKAENKIKLDCNT
KVGYITASCGRRFDRLDKVCRISSTTLSRKCTKKYRKMDNKCNKKYGKIN
VKCKRIYYRYKDFCETGVANNYWNEKYKKGEFKISRKNLQIEQLKNIATS
EGFFNDENKIQYLKSLTNEKDKMEYVQKRLQTKKPLKKPTRKHSLIIKVS
TMKPRTQTTKSIKVRSTKSVNKSEKTPSSNELDDGDEEEDILERGLTKRK
STTVKPATHTKKAGTIKPIIPTKKVGKRSISNEFEAEEEEDFIQRM*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000035Category 3 cell
PLANA:0000421tail
PLANA:0002032epidermal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 213..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..347
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.479