SJCHGC04139 protein

Overview
NameSJCHGC04139 protein
Smed IDSMED30010380
Length (bp)1234
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SJCHGC04139 protein (SMED30010380) t-SNE clustered cells

Violin plots show distribution of expression levels for SJCHGC04139 protein (SMED30010380) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SJCHGC04139 protein (SMED30010380) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SJCHGC04139 protein (SMED30010380) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30010380

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30010380SMESG000022419.1 Contig4327GPL15192PMID:23079596
Forsthoefel et al., 2012
FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30010380SMESG000022419.1 dd_Smed_v4_4617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30010380SMESG000022419.1 dd_Smed_v4_4617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30010380SMESG000022419.1 dd_Smed_v4_4617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30010380SMESG000022419.1 dd_Smed_v4_4617_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Category 4 cellSMED30010380SMESG000022419.1 dd_Smed_v4_4617_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30010380SMESG000022419.1 dd_Smed_v4_4617_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: G4V7U7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_054810 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.809e-36
Identity = 87/232 (37.50%), Postives = 129/232 (55.60%), Query Frame = 2
Query:  314 LYVNIRKEQSKEKDSESLYVSDDDRRRNTRSIDRLPNRDRVD----YQSRLTTLKS-NGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994
            +Y NI K  +K+ D   +Y+S + +     S     N  R      YQ  L   KS  GT+     +  H   SRSL A +A+  +    ++++Q E+HD+ VQ     + +G+A+K   IA   +++F+L    GL+I  L ++Y NI+ SLD+GE IGP L+ACSF+F G G+KF YDA+++  +ER+ I YKA     V V T D       EKLVSG ++ NAL+R P
Sbjct:   76 VYQNIMKS-TKQMD-PCVYMSSNMQTVENGSTVLTSNNSRTGSISGYQPSLLLAKSAQGTRSLYAPS--HFRMSRSLKASKASLVTYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELIGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAVTTVDQRVTDGEEKLVSGQTSKNALSRAP 303          
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A095AMK0 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_03646 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.243e-35
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  506 HIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994
            H   SRSL A +A+  +    ++++Q E+HD+ VQ     + +G+A+K   IA   +++F+L    GL+I  L ++Y NI+ SLD+GE  GP L+ACSF+F G G+KF YDA+++  +ER+ I YKA     V V T D      +EKLVSG ++ NAL+R P
Sbjct:  134 HFRMSRSLKASKASLATYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELTGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAVTTVDQRVTDGDEKLVSGQTSKNALSRAP 296          
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A183PD19 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS12255 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.860e-35
Identity = 68/163 (41.72%), Postives = 101/163 (61.96%), Query Frame = 2
Query:  506 HIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994
            H   SRSL A +A+  +    ++++Q E+HD+ VQ     + +G+A+K   IA   +++F+L    GL+I  L ++Y NI+ SLD+GE  GP L+ACSF+F G G+KF YDA+++  +ER+ I YKA     V V T D       EKLVSG ++ NAL+R P
Sbjct:  141 HFRMSRSLKASKASLATYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELTGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAVTTVDQRVTDGEEKLVSGQTSKNALSRAP 303          
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A183L9P3 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS518 PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.992e-35
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  506 HIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994
            H   SRSL A +A+  +    ++++Q E+HD+ VQ     + +G+A+K   IA   +++F+L    GL+I  L ++Y NI+ SLD+GE  GP L+ACSF+F G G+KF YDA+++  +ER+ I YKA     V + T D     A EKLVSG ++ NAL+R P
Sbjct:  187 HFRMSRSLKASKASLATYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELTGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAITTVDQRVTDAEEKLVSGQTSKNALSRAP 349          
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A5J4NNJ4 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0015244 PE=4 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.587e-31
Identity = 72/159 (45.28%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994
            SRSL A +A+  +    ++++Q E+HD+ VQ     + +G+ RK   I+ A F++F+L    GL+I  L ++Y N++ SLDVGE +GP L+A SF F G+GIKF YDA+KI  +ERRRI YKA     V V T +      +EKLVSG ++ NALTR P
Sbjct:  136 SRSLKASKASIATYKSGRTTIQAEHHDRKVQRELNSVKFGRGRKLYWISVASFIMFLLVLFVGLLITCLRFIYMNLILSLDVGEMVGPLLIATSFFFFGLGIKFYYDAYKIGCEERRRIKYKAASPSTVAVTTVNERVTDTDEKLVSGQTSQNALTRAP 294          
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000022419.1 (SMESG000022419.1)

HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0
Identity = 324/325 (99.69%), Postives = 324/325 (99.69%), Query Frame = 2
Query:  113 MNSHKERLKTIAGKDSTLNKQXXXXXXXXXXXXXXXXXTDNAAKIHRSKSENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLYVSDDDRRRNTRSIDRLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTLSMEDRTLARSTQSKMNTRTEKSSDV 1087
            MNSHKERLKTIAGKDSTLNKQNNRNSSLNHSRRSNSRLTDNAAKIHRSKSENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLY SDDDRRRNTRSIDRLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTLSMEDRTLARSTQSKMNTRTEKSSDV
Sbjct:    1 MNSHKERLKTIAGKDSTLNKQNNRNSSLNHSRRSNSRLTDNAAKIHRSKSENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLYFSDDDRRRNTRSIDRLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTLSMEDRTLARSTQSKMNTRTEKSSDV 325          
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1)

HSP 1 Score: 119.783 bits (299), Expect = 7.170e-31
Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTR 988
            SRSL A +A+  S   +KS++QQEYHD  VQ+      +G ARKP  +A   F L VLF   GL I+ L   + NI  SLDVGE IGP  +A S I+L +GIKFI DA+ I+  ERR+I ++  +   + V T      +  EKLV+G++T  A++R
Sbjct:  108 SRSLGASKASIAS---QKSTIQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRG-FGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINV-TKGEITKRPQEKLVTGTNTKEAISR 259          
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1)

HSP 1 Score: 119.783 bits (299), Expect = 8.279e-31
Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTR 988
            SRSL A +A+  S   +KS++QQEYHD  VQ+      +G ARKP  +A   F L VLF   GL I+ L   + NI  SLDVGE IGP  +A S I+L +GIKFI DA+ I+  ERR+I ++  +   + V T      +  EKLV+G++T  A++R
Sbjct:  114 SRSLGASKASIAS---QKSTIQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRG-FGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINV-TKGEITKRPQEKLVTGTNTKEAISR 265          
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1)

HSP 1 Score: 119.783 bits (299), Expect = 8.491e-31
Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTR 988
            SRSL A +A+  S   +KS++QQEYHD  VQ+      +G ARKP  +A   F L VLF   GL I+ L   + NI  SLDVGE IGP  +A S I+L +GIKFI DA+ I+  ERR+I ++  +   + V T      +  EKLV+G++T  A++R
Sbjct:  125 SRSLGASKASIAS---QKSTIQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRG-FGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINV-TKGEITKRPQEKLVTGTNTKEAISR 276          
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000078527.1 (SMESG000078527.1)

HSP 1 Score: 108.997 bits (271), Expect = 7.861e-27
Identity = 62/163 (38.04%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  509 IYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTN-DHNPM-KANEKLVSGSSTNNALTRL 991
            I  SRSL   +A+  S    KSS+QQE+HD  VQ+    + YG A++P R +   FV+  +FF+ GL +I +  LY  +  S+D GE IGP  +    I L VGIKF+ DA++  + ER+R+G++A     V ++T  +HN    AN  + SGS+   A+ ++
Sbjct:  111 ISASRSLGGSKASLASAKSYKSSIQQEFHDIKVQKKINSLAYGHAKRPFRYSIICFVIGGVFFLIGLTVI-MFRLYGQLFLSMDKGEIIGPIFIVSGVILLSVGIKFMVDAYRYGQLERKRLGFRAAGPNMVVLKTTPNHNVTPTANNYVQSGSAGAQAINKV 272          
The following BLAST results are available for this feature:
BLAST of SJCHGC04139 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G4V7U72.809e-3637.50Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A095AMK01.243e-3541.72Uncharacterized protein OS=Schistosoma haematobium... [more]
A0A183PD191.860e-3541.72Uncharacterized protein OS=Schistosoma mattheei OX... [more]
A0A183L9P32.992e-3541.72Uncharacterized protein OS=Schistosoma margrebowie... [more]
A0A5J4NNJ46.587e-3145.28Uncharacterized protein OS=Paragonimus westermani ... [more]
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BLAST of SJCHGC04139 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SJCHGC04139 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000022419.10.000e+099.69SMESG000022419.1[more]
SMESG000035447.17.170e-3143.95SMESG000035447.1[more]
SMESG000035447.18.279e-3143.95SMESG000035447.1[more]
SMESG000035447.18.491e-3143.95SMESG000035447.1[more]
SMESG000078527.17.861e-2738.04SMESG000078527.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010380 ID=SMED30010380|Name=SJCHGC04139 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1234bp
GAACAAATGTGTTTTTGTTATGATGCTTGAGTTAAAATAGTTTCTTTTTA
AATATACGGAAATTATTTAATTAAATAATCTGAATGAATTTTATGATTCA
CTAAGCAATTAAATGAATTCACACAAAGAAAGATTGAAGACAATTGCAGG
AAAAGATTCAACTTTGAATAAGCAAAATAATCGAAATTCAAGTTTAAATC
ACAGTCGTAGATCTAACTCTCGTCTCACTGACAACGCTGCAAAAATCCAT
CGGTCAAAATCAGAAAATACAGTTTCTGATGAAGATGTCGAATCCAACGA
TAGGCGAAGTCCACTTTATGTCAACATTCGTAAAGAACAGAGTAAAGAAA
AAGACTCCGAATCTCTATATGTTTCTGACGATGACCGAAGGCGAAACACG
AGATCTATAGATAGATTACCAAATCGAGATCGAGTTGATTACCAATCAAG
ACTGACGACATTAAAATCTAATGGAACTAAACCCTACCTTACCATGAATG
GCGGCCACATCTATAAATCTCGCAGTCTAAACGCAATCGAAGCTACAAAA
CCATCTGATGTATTAAAAAAAAGTTCAGTTCAACAAGAATATCACGATAA
AGCAGTCCAGGAATATTTCAAAGGAATAACCTATGGAAAAGCGCGCAAAC
CATGTCGAATAGCTACTGCTATGTTTGTGCTATTCGTGCTGTTTTTCATT
ACTGGATTGGTTATTATTGGTTTAACATATTTGTATCAAAATATTATGCC
GAGTCTCGATGTCGGCGAAGCCATTGGACCATGTCTTCTAGCGTGCTCGT
TTATTTTTCTAGGAGTGGGAATTAAATTCATTTACGATGCACATAAAATA
TCTCGCAAAGAACGTCGAAGAATTGGTTATAAGGCATATGATAGACGATA
TGTAGGAGTTAGAACAAATGACCATAATCCTATGAAAGCAAATGAAAAAT
TGGTCAGTGGGTCTTCAACAAATAATGCCCTGACTCGTTTACCGAACAGA
GTGAATACTCTCTCCATGGAAGACCGAACACTCGCTCGCTCGACACAATC
GAAAATGAATACACGAACAGAAAAGTCTTCAGATGTTTGATGATGGGAAA
TATTTGTTTTATCATTTTGTAATTTATCACCAACAGAACTTGAATTTTTC
TTTCAGAGTTTTTAGCATATCATTTTTAAAGAATGGCTGTGATTTTGTGT
TCGTTTTGATGTCTAACATAATATGTAATTTTTC
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protein sequence of SMED30010380-orf-1

>SMED30010380-orf-1 ID=SMED30010380-orf-1|Name=SMED30010380-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=326bp
MNSHKERLKTIAGKDSTLNKQNNRNSSLNHSRRSNSRLTDNAAKIHRSKS
ENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLYVSDDDRRRNTRSID
RLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDV
LKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLV
IIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKE
RRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTL
SMEDRTLARSTQSKMNTRTEKSSDV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000018Category 4 cell
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0002032epidermal cell
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..36
NoneNo IPR availableTMHMMTMhelixcoord: 219..241
NoneNo IPR availableTMHMMTMhelixcoord: 187..209