SJCHGC04139 protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010380 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: G4V7U7 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_054810 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.809e-36 Identity = 87/232 (37.50%), Postives = 129/232 (55.60%), Query Frame = 2 Query: 314 LYVNIRKEQSKEKDSESLYVSDDDRRRNTRSIDRLPNRDRVD----YQSRLTTLKS-NGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994 +Y NI K +K+ D +Y+S + + S N R YQ L KS GT+ + H SRSL A +A+ + ++++Q E+HD+ VQ + +G+A+K IA +++F+L GL+I L ++Y NI+ SLD+GE IGP L+ACSF+F G G+KF YDA+++ +ER+ I YKA V V T D EKLVSG ++ NAL+R P Sbjct: 76 VYQNIMKS-TKQMD-PCVYMSSNMQTVENGSTVLTSNNSRTGSISGYQPSLLLAKSAQGTRSLYAPS--HFRMSRSLKASKASLVTYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELIGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAVTTVDQRVTDGEEKLVSGQTSKNALSRAP 303
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A095AMK0 (Uncharacterized protein OS=Schistosoma haematobium OX=6185 GN=MS3_03646 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.243e-35 Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 2 Query: 506 HIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994 H SRSL A +A+ + ++++Q E+HD+ VQ + +G+A+K IA +++F+L GL+I L ++Y NI+ SLD+GE GP L+ACSF+F G G+KF YDA+++ +ER+ I YKA V V T D +EKLVSG ++ NAL+R P Sbjct: 134 HFRMSRSLKASKASLATYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELTGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAVTTVDQRVTDGDEKLVSGQTSKNALSRAP 296
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A183PD19 (Uncharacterized protein OS=Schistosoma mattheei OX=31246 GN=SMTD_LOCUS12255 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.860e-35 Identity = 68/163 (41.72%), Postives = 101/163 (61.96%), Query Frame = 2 Query: 506 HIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994 H SRSL A +A+ + ++++Q E+HD+ VQ + +G+A+K IA +++F+L GL+I L ++Y NI+ SLD+GE GP L+ACSF+F G G+KF YDA+++ +ER+ I YKA V V T D EKLVSG ++ NAL+R P Sbjct: 141 HFRMSRSLKASKASLATYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELTGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAVTTVDQRVTDGEEKLVSGQTSKNALSRAP 303
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A183L9P3 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS518 PE=4 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 2.992e-35 Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 2 Query: 506 HIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994 H SRSL A +A+ + ++++Q E+HD+ VQ + +G+A+K IA +++F+L GL+I L ++Y NI+ SLD+GE GP L+ACSF+F G G+KF YDA+++ +ER+ I YKA V + T D A EKLVSG ++ NAL+R P Sbjct: 187 HFRMSRSLKASKASLATYKSGRTTIQAEHHDRKVQREINSVKFGRAKKLYWIAVGFYIMFLLVLFIGLLITCLRHVYMNIILSLDIGELTGPLLIACSFLFFGAGMKFYYDAYRLGSEERKLIKYKAASPSTVAITTVDQRVTDAEEKLVSGQTSKNALSRAP 349
BLAST of SJCHGC04139 protein vs. TrEMBL
Match: A0A5J4NNJ4 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0015244 PE=4 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.587e-31 Identity = 72/159 (45.28%), Postives = 102/159 (64.15%), Query Frame = 2 Query: 518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLP 994 SRSL A +A+ + ++++Q E+HD+ VQ + +G+ RK I+ A F++F+L GL+I L ++Y N++ SLDVGE +GP L+A SF F G+GIKF YDA+KI +ERRRI YKA V V T + +EKLVSG ++ NALTR P Sbjct: 136 SRSLKASKASIATYKSGRTTIQAEHHDRKVQRELNSVKFGRGRKLYWISVASFIMFLLVLFVGLLITCLRFIYMNLILSLDVGEMVGPLLIATSFFFFGLGIKFYYDAYKIGCEERRRIKYKAASPSTVAVTTVNERVTDTDEKLVSGQTSQNALTRAP 294
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000022419.1 (SMESG000022419.1) HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0 Identity = 324/325 (99.69%), Postives = 324/325 (99.69%), Query Frame = 2 Query: 113 MNSHKERLKTIAGKDSTLNKQXXXXXXXXXXXXXXXXXTDNAAKIHRSKSENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLYVSDDDRRRNTRSIDRLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTLSMEDRTLARSTQSKMNTRTEKSSDV 1087 MNSHKERLKTIAGKDSTLNKQNNRNSSLNHSRRSNSRLTDNAAKIHRSKSENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLY SDDDRRRNTRSIDRLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTLSMEDRTLARSTQSKMNTRTEKSSDV Sbjct: 1 MNSHKERLKTIAGKDSTLNKQNNRNSSLNHSRRSNSRLTDNAAKIHRSKSENTVSDEDVESNDRRSPLYVNIRKEQSKEKDSESLYFSDDDRRRNTRSIDRLPNRDRVDYQSRLTTLKSNGTKPYLTMNGGHIYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTRLPNRVNTLSMEDRTLARSTQSKMNTRTEKSSDV 325
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1) HSP 1 Score: 119.783 bits (299), Expect = 7.170e-31 Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 2 Query: 518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTR 988 SRSL A +A+ S +KS++QQEYHD VQ+ +G ARKP +A F L VLF GL I+ L + NI SLDVGE IGP +A S I+L +GIKFI DA+ I+ ERR+I ++ + + V T + EKLV+G++T A++R Sbjct: 108 SRSLGASKASIAS---QKSTIQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRG-FGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINV-TKGEITKRPQEKLVTGTNTKEAISR 259
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1) HSP 1 Score: 119.783 bits (299), Expect = 8.279e-31 Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 2 Query: 518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTR 988 SRSL A +A+ S +KS++QQEYHD VQ+ +G ARKP +A F L VLF GL I+ L + NI SLDVGE IGP +A S I+L +GIKFI DA+ I+ ERR+I ++ + + V T + EKLV+G++T A++R Sbjct: 114 SRSLGASKASIAS---QKSTIQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRG-FGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINV-TKGEITKRPQEKLVTGTNTKEAISR 265
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000035447.1 (SMESG000035447.1) HSP 1 Score: 119.783 bits (299), Expect = 8.491e-31 Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 2 Query: 518 SRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTNDHNPMKANEKLVSGSSTNNALTR 988 SRSL A +A+ S +KS++QQEYHD VQ+ +G ARKP +A F L VLF GL I+ L + NI SLDVGE IGP +A S I+L +GIKFI DA+ I+ ERR+I ++ + + V T + EKLV+G++T A++R Sbjct: 125 SRSLGASKASIAS---QKSTIQQEYHDIKVQKKLTSPWFGAARKPFMLAMIFFSLAVLFLGIGLTILFLRG-FGNIFLSLDVGEIIGPIFIALSIIWLALGIKFIIDAYNIAEMERRKIKFRGDNATMINV-TKGEITKRPQEKLVTGTNTKEAISR 276
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Match: SMESG000078527.1 (SMESG000078527.1) HSP 1 Score: 108.997 bits (271), Expect = 7.861e-27 Identity = 62/163 (38.04%), Postives = 95/163 (58.28%), Query Frame = 2 Query: 509 IYKSRSLNAIEATKPSDVLKKSSVQQEYHDKAVQEYFKGITYGKARKPCRIATAMFVLFVLFFITGLVIIGLTYLYQNIMPSLDVGEAIGPCLLACSFIFLGVGIKFIYDAHKISRKERRRIGYKAYDRRYVGVRTN-DHNPM-KANEKLVSGSSTNNALTRL 991 I SRSL +A+ S KSS+QQE+HD VQ+ + YG A++P R + FV+ +FF+ GL +I + LY + S+D GE IGP + I L VGIKF+ DA++ + ER+R+G++A V ++T +HN AN + SGS+ A+ ++ Sbjct: 111 ISASRSLGGSKASLASAKSYKSSIQQEFHDIKVQKKINSLAYGHAKRPFRYSIICFVIGGVFFLIGLTVI-MFRLYGQLFLSMDKGEIIGPIFIVSGVILLSVGIKFMVDAYRYGQLERKRLGFRAAGPNMVVLKTTPNHNVTPTANNYVQSGSAGAQAINKV 272 The following BLAST results are available for this feature:
BLAST of SJCHGC04139 protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SJCHGC04139 protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SJCHGC04139 protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SJCHGC04139 protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SJCHGC04139 protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010380 ID=SMED30010380|Name=SJCHGC04139 protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1234bpback to top protein sequence of SMED30010380-orf-1 >SMED30010380-orf-1 ID=SMED30010380-orf-1|Name=SMED30010380-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=326bp MNSHKERLKTIAGKDSTLNKQNNRNSSLNHSRRSNSRLTDNAAKIHRSKSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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