SMED30010364

Overview
NameSMED30010364
Smed IDSMED30010364
Length (bp)1348
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30010364 (SMED30010364) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30010364 (SMED30010364) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30010364 (SMED30010364) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30010364 (SMED30010364) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30010364

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 44

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30010364h1SMcG0007332 Contig139newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0007332 Contig139uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0012211 Contig139newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0012211 Contig139uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0012211 Contig3451uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0012211 Contig3451newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0017260 Contig3451uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010364h1SMcG0017260 Contig3451newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
pharynxSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
GABAergic neuronSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30010364h1SMcG0012205 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
GABAergic neuronSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30010364h1SMcG0012211 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
pharynxSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
intestinal phagocyteSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
GABAergic neuronSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
secretory systemSMED30010364h1SMcG0012210 dd_Smed_v6_1137_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30010364h1SMcG0012211 dd_Smed_v4_1137_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30010364h1SMcG0012211 dd_Smed_v4_10418_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
non-ciliated epidermisSMED30010364h1SMcG0012211 dd_Smed_v4_10418_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30010364 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001626:42756..44103 -6556
Homology
[Close]
BLAST of SMED30010364 vs. Planmine SMEST
Match: SMESG000044775.1 (SMESG000044775.1)

HSP 1 Score: 117.857 bits (294), Expect = 2.027e-29
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEI 210
            SADESNHL L  NDELTAN ICCFEPL+KLSKDI+VNSRVFC  LK GG C+W+GLINGK YVGI FDEI
Sbjct:  376 SADESNHLPLADNDELTANNICCFEPLDKLSKDIKVNSRVFCQQLKAGGKCKWMGLINGKGYVGIGFDEI 445

HSP 2 Score: 30.8018 bits (68), Expect = 2.027e-29
Identity = 14/27 (51.85%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:  258 HRRT-RSDQISEILQIDYRIQMIPIQC 335
            HRR  R +++S IL+ID RI++IP++C
Sbjct:  446 HRRAERFNKLSRILKIDDRIRIIPLEC 472

HSP 3 Score: 118.242 bits (295), Expect = 3.435e-28
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIV 213
            SADESNHL L  NDELTAN ICCFEPL+KLSKDI+VNSRVFC  LK GG C W+GLINGK YVGI FDEI+
Sbjct:  177 SADESNHLPLADNDELTANNICCFEPLDKLSKDIKVNSRVFCQQLKAGGKCNWMGLINGKGYVGIEFDEII 247
[Close]
BLAST of SMED30010364 vs. Planmine SMEST
Match: SMESG000007085.1 (SMESG000007085.1)

HSP 1 Score: 118.627 bits (296), Expect = 1.588e-28
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIVNY 219
            SADESNHL L  NDELTAN ICCFEPL+KLSKDI+VNSRVFC  LK GG C W+GLINGK YVGI FDEI  Y
Sbjct:  102 SADESNHLPLADNDELTANNICCFEPLDKLSKDIKVNSRVFCQQLKAGGKCNWMGLINGKGYVGIEFDEIPEY 174

HSP 2 Score: 104.76 bits (260), Expect = 6.292e-24
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGK----EYVGILFDEIVNYSIIYF 234
            SADESN L L  NDELTAN ICCFEPLEKLS DIEVNSRVFC  LK GG C+W+GLINGK      +  +FD+IV+   I++
Sbjct:  210 SADESNDLPLADNDELTANNICCFEPLEKLSNDIEVNSRVFCQQLKAGGKCKWMGLINGKGVENAKLHFIFDKIVDTGKIFY 291
[Close]
BLAST of SMED30010364 vs. Planmine SMEST
Match: SMESG000007085.1 (SMESG000007085.1)

HSP 1 Score: 118.242 bits (295), Expect = 1.823e-28
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIVNY 219
            SADESNHL L  NDELTAN ICCFEPL+KLSKDI+VNSRVFC  LK GG C W+GLINGK YVGI FDEI  Y
Sbjct:  102 SADESNHLPLADNDELTANNICCFEPLDKLSKDIKVNSRVFCQQLKAGGKCNWMGLINGKGYVGIEFDEIPEY 174

HSP 2 Score: 114.775 bits (286), Expect = 3.400e-27
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIV 213
            SADESN L L  NDELTAN ICCFEPLEKLS DIEVNSRVFC  LK GG C+W+GLINGK YVGI FDEI+
Sbjct:  210 SADESNDLPLADNDELTANNICCFEPLEKLSNDIEVNSRVFCQQLKAGGKCKWMGLINGKGYVGIEFDEIL 280
[Close]
BLAST of SMED30010364 vs. Planmine SMEST
Match: SMESG000007085.1 (SMESG000007085.1)

HSP 1 Score: 118.627 bits (296), Expect = 1.921e-28
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIVNY 219
            SADESNHL L  NDELTAN ICCFEPL+KLSKDI+VNSRVFC  LK GG C W+GLINGK YVGI FDEI  Y
Sbjct:  102 SADESNHLPLADNDELTANNICCFEPLDKLSKDIKVNSRVFCQQLKAGGKCNWMGLINGKGYVGIEFDEIPEY 174

HSP 2 Score: 114.39 bits (285), Expect = 4.684e-27
Identity = 56/70 (80.00%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEI 210
            SADESN L L  NDELTAN ICCFEPLEKLS DIEVNSRVFC  LK GG C+W+GLINGK YVGI FDEI
Sbjct:  210 SADESNDLPLADNDELTANNICCFEPLEKLSNDIEVNSRVFCQQLKAGGKCKWMGLINGKGYVGIEFDEI 279
[Close]
BLAST of SMED30010364 vs. Planmine SMEST
Match: SMESG000056845.1 (SMESG000056845.1)

HSP 1 Score: 119.013 bits (297), Expect = 2.353e-28
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIV 213
            SADESNHL L  NDELTAN ICCFEPL+KLSKDI+VNSRVFC  LK GG C W+GLINGK YVGI FDEI+
Sbjct:  328 SADESNHLPLADNDELTANNICCFEPLDKLSKDIKVNSRVFCQQLKAGGKCNWMGLINGKGYVGIEFDEII 398

HSP 2 Score: 114.005 bits (284), Expect = 1.391e-26
Identity = 59/95 (62.11%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGTCEWLGLINGKEYVGILFDEIVNYSIIYFCINFFHRLTDAPGVIKY 285
            SADESN L L  NDELT N ICCFEPLEKLS DIEVNSRVFC  LK GG C+W+GLINGK YVGI FDEI   +  +   N   R+    G I++
Sbjct:  527 SADESNDLPLTDNDELTENNICCFEPLEKLSNDIEVNSRVFCQQLKAGGKCKWMGLINGKGYVGIEFDEIHRRAERF---NELSRILKIEGRIRF 618
The following BLAST results are available for this feature:
BLAST of SMED30010364 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010364 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000044775.12.027e-2980.00SMESG000044775.1[more]
SMESG000007085.11.588e-2878.08SMESG000007085.1[more]
SMESG000007085.11.823e-2878.08SMESG000007085.1[more]
SMESG000007085.11.921e-2878.08SMESG000007085.1[more]
SMESG000056845.12.353e-2878.87SMESG000056845.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010364 ID=SMED30010364|Name=SMED30010364|organism=Schmidtea mediterranea sexual|type=transcript|length=1348bp
TCAGCTGATGAATCAAATCATTTGTCATTGGTTGCTAATGATGAGTTGAC
AGCGAATAAAATCTGTTGCTTTGAACCCTTGGAAAAATTATCTAAGGATA
TTGAAGTGAATAGTCGGGTATTTTGTTATTTATTAAAAGATGGTGGGACG
TGCGAATGGCTGGGATTAATCAATGGAAAAGAATATGTTGGGATATTATT
TGATGAAATTGTAAATTATTCCATAATTTATTTTTGCATCAATTTTTTCC
ATAGACTCACAGACGCACCAGGAGTGATCAAATATCAGAAATATTGCAGA
TAGATTATAGAATCCAAATGATCCCCATTCAATGTTTTTATTTATATTTA
TAAGTGATATGCATAGCAGCATTTTTAATAAATTTACCAGGAATTTTTTT
CCATATTTAGTTTTTAAGTTTGAAAAGATAATCTCATAATAATATGTTTA
CAATATATTAGAGTTTTTTTCAGACTATGAATTGTGACGGTAAAAATAAA
AATATAAGGAGAAATTTCAGATTGAAGAAATGCATGTAGTATTTTGCAAT
TCTTATTTATTTACTAAAATCGGGTTTTGTTCTATTAGGTAGTTTTAATA
TTAAATTTATTGATTTTTTTCATTTTAGAAATTATTATTCGGCGGTACTA
GGTGCAATAATACTAGAACAATACCAACTTTACTAAGCTCTATTAAAATG
AAATATTGAATTAATATGGAGTAGTTATTTTATAAAGGGCGTAGCCTTCC
TATCGGTAGCTCATTGGACCTATAGTTCGCCAGGTCATAAACAGTTCTAA
TAACTGAACTCAATTTTACTGGCTTGGTGTTAATCTAAATGTTGTCAATA
GCTGAAAACAACGATTTCAAAAACATCTTCACTCAATTTATGAAAGGACC
AATCAAAATATCCTTTATGATTATTTCCTAATTAATAATTAATCATCTAG
TTGTCATTTCTCTTTCCATCTTCTCGGTTTTCTTTTTCTCTAATTTTTTC
TCTATGTTATAGTAAATTATTTCACTAATTTTAAATTAATTTTTTTGTTC
TATAAAAAATTAAGAATAATGAGGAGTATAATAAATGAGGATTAATGTTA
ATCTATAAGACATTCTTTGAATTCTATGATGATAGGGTCGACAATACTAT
CGAATGGTTTCAGCTCCCATTCCAGGATGTCGGTTTTTTCATTCAGTCCT
ATTTCAATATATTATTTTTCATTTATAATTGTCAAATACTTGAAATTATA
ATTGCTTTTATAAATTATAAAATTTACAATAATACTTCTACTAATAAACT
ATCATTATTAAATAATAATAATATAATTTATTTTTTATTTTTTTTCAG
back to top

protein sequence of SMED30010364-orf-1

>SMED30010364-orf-1 ID=SMED30010364-orf-1|Name=SMED30010364-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=101bp
SADESNHLSLVANDELTANKICCFEPLEKLSKDIEVNSRVFCYLLKDGGT
CEWLGLINGKEYVGILFDEIVNYSIIYFCINFFHRLTDAPGVIKYQKYCR
*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000463cholinergic neuron
PLANA:0000464GABAergic neuron
PLANA:0000484secretory system
PLANA:0002032epidermal cell
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 36..58