Neurogenic differentiation factor

Overview
NameNeurogenic differentiation factor
Smed IDSMED30010251
Length (bp)828
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Neurogenic differentiation factor (SMED30010251) t-SNE clustered cells

Violin plots show distribution of expression levels for Neurogenic differentiation factor (SMED30010251) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Neurogenic differentiation factor (SMED30010251) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Neurogenic differentiation factor (SMED30010251) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30010251

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30010251SMESG000066244.1 SmedASXL_000572SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30010251SMESG000066244.1 dd_Smed_v4_21717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30010251SMESG000066244.1 dd_Smed_v4_21717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30010251SMESG000066244.1 dd_Smed_v4_21717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30010251SMESG000066244.1 dd_Smed_v4_21717_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
central nervous systemSMED30010251SMESG000066244.1 DN305764ncbi_smed_estsPMID:24173799
Cowles et al., 2013
whole organism asexual adult colorimetric in situ hybridization evidence
progenitor cellSMED30010251SMESG000066244.1 DN305764ncbi_smed_estsPMID:24173799
Cowles et al., 2013
whole organism asexual adult colorimetric in situ hybridization evidence
stem cellSMED30010251SMESG000066244.1 DN305764ncbi_smed_estsPMID:24173799
Cowles et al., 2013
whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30010251SMESG000066244.1 DN305764ncbi_smed_estsPMID:24173799
Cowles et al., 2013
whole organism asexual adult colorimetric in situ hybridization evidence
neoblastSMED30010251SMESG000066244.1 SMED_05724_V2_1GPL14150_gene_modelsPMID:22385657
Wagner et al., 2012
whole organism asexual adult cDNA to DNA expression microarray evidence
neoblastSMED30010251SMESG000066244.1 SMED_05724_V2_1GPL14150PMID:22385657
Wagner et al., 2012
whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Neurogenic differentiation factor vs. Ensembl Human
Match: NEUROD1 (neuronal differentiation 1 [Source:HGNC Symbol;Acc:HGNC:7762])

HSP 1 Score: 108.997 bits (271), Expect = 4.570e-27
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  114 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 193          
BLAST of Neurogenic differentiation factor vs. Ensembl Human
Match: NEUROD6 (neuronal differentiation 6 [Source:HGNC Symbol;Acc:HGNC:13804])

HSP 1 Score: 104.375 bits (259), Expect = 1.947e-25
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+R G  PD LT+ + L +GLSQ T NLVA  L +N R
Sbjct:  107 MHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNAR 186          
BLAST of Neurogenic differentiation factor vs. Ensembl Human
Match: NEUROD2 (neuronal differentiation 2 [Source:HGNC Symbol;Acc:HGNC:7763])

HSP 1 Score: 103.219 bits (256), Expect = 1.056e-24
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD ++Y +TL +GLSQ T NLVA  L +N R
Sbjct:  134 MHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSR 213          
BLAST of Neurogenic differentiation factor vs. Ensembl Human
Match: NEUROD4 (neuronal differentiation 4 [Source:HGNC Symbol;Acc:HGNC:13802])

HSP 1 Score: 93.9745 bits (232), Expect = 9.992e-22
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  +P ++ TQKLSKIETLRLA NYIWALS+++ +G  P+   + + L +GLSQ T+NLVA  L + P+
Sbjct:  100 MHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTPEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQ 179          
BLAST of Neurogenic differentiation factor vs. Ensembl Human
Match: NEUROG3 (neurogenin 3 [Source:HGNC Symbol;Acc:HGNC:13806])

HSP 1 Score: 57.7658 bits (138), Expect = 2.097e-9
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVR 408
            MH LN AL++LR  +P F    KL+KIETLR A NYIWAL++ +R
Sbjct:   96 MHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLR 140          
BLAST of Neurogenic differentiation factor vs. Ensembl Celegans
Match: cnd-1 (Neurogenic differentiation factor 1 [Source:UniProtKB/Swiss-Prot;Acc:P46581])

HSP 1 Score: 90.1225 bits (222), Expect = 9.521e-22
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLL 519
            MHGLN+AL+ LR ++P+    QKLSKIETLRLA NYI AL +++++   P  L YA TL  GLSQTT N++A+ L + PR L
Sbjct:   32 MHGLNNALDMLREYIPITTQHQKLSKIETLRLARNYIDALQRMLQTNEQPTPLEYAHTLANGLSQTTTNMLANLLQVQPRQL 113          
BLAST of Neurogenic differentiation factor vs. Ensembl Fly
Match: tap (gene:FBgn0015550 transcript:FBtr0075216)

HSP 1 Score: 53.9138 bits (128), Expect = 5.599e-8
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSG 414
            MH LN ALE LR+ +P      KL+KIE LR A NYI+AL +++ SG
Sbjct:  167 MHNLNDALEKLRVTLPSLPEETKLTKIEILRFAHNYIFALEQVLESG 213          
BLAST of Neurogenic differentiation factor vs. Ensembl Fly
Match: cato (gene:FBgn0024249 transcript:FBtr0087183)

HSP 1 Score: 47.7506 bits (112), Expect = 2.021e-6
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSG 414
            M+GLN A E LR  VP  +  QKLSK ETL++A +YI AL  ++ +G
Sbjct:  116 MNGLNAAFERLREVVPAPSIDQKLSKFETLQMAQSYILALCDLLNNG 162          
BLAST of Neurogenic differentiation factor vs. Ensembl Fly
Match: Fer2 (gene:FBgn0038402 transcript:FBtr0344011)

HSP 1 Score: 48.521 bits (114), Expect = 2.261e-6
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  283 LNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEG 459
            +N A + LR+HVP F + ++LSKI+TLRLA  YI  L +++++    D LTY +    G
Sbjct:  173 INSAFDELRVHVPTFPYEKRLSKIDTLRLAIAYISLLREVLQTDY--DPLTYVEKCLRG 229          
BLAST of Neurogenic differentiation factor vs. Ensembl Fly
Match: Fer2 (gene:FBgn0038402 transcript:FBtr0301709)

HSP 1 Score: 48.521 bits (114), Expect = 2.384e-6
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  283 LNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEG 459
            +N A + LR+HVP F + ++LSKI+TLRLA  YI  L +++++    D LTY +    G
Sbjct:  164 INSAFDELRVHVPTFPYEKRLSKIDTLRLAIAYISLLREVLQTDY--DPLTYVEKCLRG 220          
BLAST of Neurogenic differentiation factor vs. Ensembl Fly
Match: Fer2 (gene:FBgn0038402 transcript:FBtr0344010)

HSP 1 Score: 48.521 bits (114), Expect = 2.459e-6
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  283 LNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEG 459
            +N A + LR+HVP F + ++LSKI+TLRLA  YI  L +++++    D LTY +    G
Sbjct:  169 INSAFDELRVHVPTFPYEKRLSKIDTLRLAIAYISLLREVLQTDY--DPLTYVEKCLRG 225          
BLAST of Neurogenic differentiation factor vs. Ensembl Zebrafish
Match: neurod1 (neuronal differentiation 1 [Source:NCBI gene;Acc:30169])

HSP 1 Score: 111.309 bits (277), Expect = 4.514e-28
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN ALESLR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ + L +GLSQ T NLVA  L +NPR
Sbjct:  109 MHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLMSFVQALCKGLSQPTTNLVAGCLQLNPR 188          
BLAST of Neurogenic differentiation factor vs. Ensembl Zebrafish
Match: neurod6a (neuronal differentiation 6a [Source:NCBI gene;Acc:114414])

HSP 1 Score: 107.071 bits (266), Expect = 1.234e-26
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN+AL+SLR  VP ++ TQKLSKIETLRLA NYIWALS+I+ +G  PD LT+ +TL +GLSQ T NLVA  L +N R
Sbjct:  101 MHGLNNALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILSTGKRPDLLTFVQTLCKGLSQPTTNLVAGCLQLNAR 180          
BLAST of Neurogenic differentiation factor vs. Ensembl Zebrafish
Match: neurod6a (neuronal differentiation 6a [Source:NCBI gene;Acc:114414])

HSP 1 Score: 107.071 bits (266), Expect = 1.234e-26
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN+AL+SLR  VP ++ TQKLSKIETLRLA NYIWALS+I+ +G  PD LT+ +TL +GLSQ T NLVA  L +N R
Sbjct:  101 MHGLNNALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILSTGKRPDLLTFVQTLCKGLSQPTTNLVAGCLQLNAR 180          
BLAST of Neurogenic differentiation factor vs. Ensembl Zebrafish
Match: neurod2 (neuronal differentiation 2 [Source:NCBI gene;Acc:114435])

HSP 1 Score: 104.76 bits (260), Expect = 1.278e-25
Identity = 58/121 (47.93%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLLXXXXXXXXXXXEKLYDCQELDPTDQQYPVNTIIKYPFYC 636
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+R+G  PD ++Y +TL +GLSQ T NLVA  L +N R                  CQE        P  +I  YP+ C
Sbjct:  120 MHDLNSALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRNGKRPDVVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQ------------CQEGVRFHTPTPSFSIQSYPYQC 228          
BLAST of Neurogenic differentiation factor vs. Ensembl Zebrafish
Match: neurod6b (neuronal differentiation 6b [Source:NCBI gene;Acc:114415])

HSP 1 Score: 103.99 bits (258), Expect = 1.393e-25
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN ALESLR  VP ++ TQKLSKIETLRLA NYIWALS+ + +G  PD L + +TL +GLSQ T NLVA  L +N R
Sbjct:   91 MHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSETLSAGKRPDLLAFVQTLCKGLSQPTTNLVAGCLQLNAR 170          
BLAST of Neurogenic differentiation factor vs. Ensembl Xenopus
Match: neurod1 (neuronal differentiation 1 [Source:NCBI gene;Acc:100038290])

HSP 1 Score: 108.612 bits (270), Expect = 6.368e-27
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  121 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 200          
BLAST of Neurogenic differentiation factor vs. Ensembl Xenopus
Match: neurod6 (neuronal differentiation 6 [Source:NCBI gene;Acc:779726])

HSP 1 Score: 105.145 bits (261), Expect = 1.081e-25
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+R G  PD LT+ ++L +GLSQ T NLVA  L +N R
Sbjct:  107 MHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQSLCKGLSQPTTNLVAGCLQLNAR 186          
BLAST of Neurogenic differentiation factor vs. Ensembl Xenopus
Match: neurod2 (neuronal differentiation 2 [Source:NCBI gene;Acc:779941])

HSP 1 Score: 103.219 bits (256), Expect = 5.598e-25
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD + Y +TL +GLSQ T NLVA  L +N R
Sbjct:  117 MHDLNSALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVAYVQTLCKGLSQPTTNLVAGCLQLNSR 196          
BLAST of Neurogenic differentiation factor vs. Ensembl Xenopus
Match: neurod4 (neuronal differentiation 4 [Source:NCBI gene;Acc:100124310])

HSP 1 Score: 90.1225 bits (222), Expect = 2.345e-20
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLL 519
            MHGLN ALE+LR  +P ++ TQKLSKIETLRLA NYIWALS I+  G   +   + + L +GLSQ T+NLVA  + + P+ +
Sbjct:   92 MHGLNDALENLRRVMPCYSKTQKLSKIETLRLARNYIWALSDILEQGQSTEGKGFLEMLCKGLSQPTSNLVAGCMQLGPQAM 173          
BLAST of Neurogenic differentiation factor vs. Ensembl Xenopus
Match: neurog1 (neurogenin 1 [Source:NCBI gene;Acc:100144651])

HSP 1 Score: 58.5362 bits (140), Expect = 1.367e-9
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVR 408
            MH LN AL+ LR  +P F    KL+KIETLRLA NYIWALS+ +R
Sbjct:   88 MHNLNSALDELRGILPSFPDDTKLTKIETLRLAHNYIWALSETLR 132          
BLAST of Neurogenic differentiation factor vs. Ensembl Mouse
Match: Neurod1 (neurogenic differentiation 1 [Source:MGI Symbol;Acc:MGI:1339708])

HSP 1 Score: 109.383 bits (272), Expect = 2.788e-27
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  114 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 193          
BLAST of Neurogenic differentiation factor vs. Ensembl Mouse
Match: Neurod6 (neurogenic differentiation 6 [Source:MGI Symbol;Acc:MGI:106593])

HSP 1 Score: 104.375 bits (259), Expect = 1.364e-25
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+R G  PD LT+ + L +GLSQ T NLVA  L +N R
Sbjct:  107 MHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGKRPDLLTFVQNLCKGLSQPTTNLVAGCLQLNAR 186          
BLAST of Neurogenic differentiation factor vs. Ensembl Mouse
Match: Neurod2 (neurogenic differentiation 2 [Source:MGI Symbol;Acc:MGI:107755])

HSP 1 Score: 103.219 bits (256), Expect = 7.556e-25
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD ++Y +TL +GLSQ T NLVA  L +N R
Sbjct:  135 MHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSR 214          
BLAST of Neurogenic differentiation factor vs. Ensembl Mouse
Match: Neurod4 (neurogenic differentiation 4 [Source:MGI Symbol;Acc:MGI:108055])

HSP 1 Score: 89.7373 bits (221), Expect = 2.658e-20
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  +P ++ TQKLSKIETLRLA NYIWALS+++ +G   +   + + L +GLSQ T+NLVA  L + P+
Sbjct:  100 MHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETGQTLEGKGFVEMLCKGLSQPTSNLVAGCLQLGPQ 179          
BLAST of Neurogenic differentiation factor vs. Ensembl Mouse
Match: Neurog3 (neurogenin 3 [Source:MGI Symbol;Acc:MGI:893591])

HSP 1 Score: 55.4546 bits (132), Expect = 3.902e-10
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVR 408
            MH LN AL++LR  +P F    KL+KIETLR A NYIWAL++ +R
Sbjct:    1 MHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLR 45          
BLAST of Neurogenic differentiation factor vs. UniProt/SwissProt
Match: sp|O42202|NDF1_DANRE (Neurogenic differentiation factor 1 OS=Danio rerio OX=7955 GN=neurod1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.408e-27
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN ALESLR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ + L +GLSQ T NLVA  L +NPR
Sbjct:  109 MHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLMSFVQALCKGLSQPTTNLVAGCLQLNPR 188          
BLAST of Neurogenic differentiation factor vs. UniProt/SwissProt
Match: sp|Q91616|NDF1_XENLA (Neurogenic differentiation factor 1 OS=Xenopus laevis OX=8355 GN=neurod1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.241e-27
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL+SLR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  115 MHGLNDALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 194          
BLAST of Neurogenic differentiation factor vs. UniProt/SwissProt
Match: sp|Q60430|NDF1_MESAU (Neurogenic differentiation factor 1 OS=Mesocricetus auratus OX=10036 GN=NEUROD1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.836e-26
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  113 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 192          
BLAST of Neurogenic differentiation factor vs. UniProt/SwissProt
Match: sp|Q60867|NDF1_MOUSE (Neurogenic differentiation factor 1 OS=Mus musculus OX=10090 GN=Neurod1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.950e-26
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  114 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 193          
BLAST of Neurogenic differentiation factor vs. UniProt/SwissProt
Match: sp|Q64289|NDF1_RAT (Neurogenic differentiation factor 1 OS=Rattus norvegicus OX=10116 GN=Neurod1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.182e-26
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ +TL +GLSQ T NLVA  L +NPR
Sbjct:  114 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPR 193          
BLAST of Neurogenic differentiation factor vs. TrEMBL
Match: A0A0A7M6A3 (Neurogenic differentiation factor (Fragment) OS=Schmidtea polychroa OX=50054 GN=neuroD PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.270e-61
Identity = 146/149 (97.99%), Postives = 148/149 (99.33%), Query Frame = 1
Query:  139 LMMTTSSVDXXXXXXXXXXXXXMTXXXXXXXXXXXXXXXXXXXXXMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLLXXXXXXXXXXXEKLYDCQELDP 585
            LMMTTSSVDIKIPKKRGPKKKPMTEERRERLVQRRARANSRERNRMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLH+NPRLLSKSS NFTNSS+KLYDCQELDP
Sbjct:    1 LMMTTSSVDIKIPKKRGPKKKPMTEERRERLVQRRARANSRERNRMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHVNPRLLSKSSGNFTNSSDKLYDCQELDP 149          
BLAST of Neurogenic differentiation factor vs. TrEMBL
Match: R7TSH4 (BHLH domain-containing protein (Fragment) OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_111699 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.906e-29
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLL 519
            MHGLN ALE LR +VP ++ TQKLSKIETLRLA NYI +L+ I+++G+ PDT+T+AKTLT+GLSQ T NLVA SL +NPR L
Sbjct:   24 MHGLNEALEVLREYVPCYSKTQKLSKIETLRLARNYISSLAGILKNGVKPDTITFAKTLTDGLSQNTMNLVAGSLQLNPRTL 105          
BLAST of Neurogenic differentiation factor vs. TrEMBL
Match: V4AVY5 (BHLH domain-containing protein (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_59712 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.238e-28
Identity = 50/82 (60.98%), Postives = 69/82 (84.15%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLL 519
            MHGLNHAL+ LR HVP ++ TQKLSKIETLRLA NYI++L+ I+++G+ PD++++AK+L++GLSQ T N+VA  L +NPR L
Sbjct:   27 MHGLNHALDDLRRHVPCYSKTQKLSKIETLRLARNYIFSLADILKNGVRPDSVSFAKSLSKGLSQNTMNMVAGCLQLNPRTL 108          
BLAST of Neurogenic differentiation factor vs. TrEMBL
Match: A0A223GC67 (NeuroD (Fragment) OS=Capitella teleta OX=283909 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.604e-27
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLL 519
            MHGLN ALE LR +VP ++ TQKLSKIETLRLA NYI +L+ I+++G+ PDT+T+AKTLT+GLSQ T NLVA SL +NPR L
Sbjct:  113 MHGLNEALEVLREYVPCYSKTQKLSKIETLRLARNYISSLAGILKNGVKPDTITFAKTLTDGLSQNTMNLVAGSLQLNPRTL 194          
BLAST of Neurogenic differentiation factor vs. TrEMBL
Match: A0A210Q1G1 (Neurogenic differentiation factor 6-A OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT19140 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.658e-27
Identity = 53/82 (64.63%), Postives = 69/82 (84.15%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLL 519
            MHGLN AL+ LR HVP ++ TQKLSKIETLRLA NYI+AL++I++SG+ PD++++AK L++GLSQ T NLVA  LH+NPR L
Sbjct:  116 MHGLNDALDELREHVPCYSKTQKLSKIETLRLARNYIFALAEILKSGMKPDSVSFAKALSKGLSQNTMNLVAGGLHLNPRTL 197          
BLAST of Neurogenic differentiation factor vs. Ensembl Cavefish
Match: neurod1 (neuronal differentiation 1 [Source:NCBI gene;Acc:30169])

HSP 1 Score: 108.997 bits (271), Expect = 3.181e-27
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN ALE LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD +++ + L +GLSQ T NLVA  L +NPR
Sbjct:  109 MHGLNDALEGLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKSPDLMSFVQALCKGLSQPTTNLVAGCLQLNPR 188          
BLAST of Neurogenic differentiation factor vs. Ensembl Cavefish
Match: neurod6a (neuronal differentiation 6a [Source:NCBI gene;Acc:114414])

HSP 1 Score: 105.145 bits (261), Expect = 6.689e-26
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN+AL+SLR  VP ++ TQKLSKIETLRLA NYIWALS+I+ +G  PD L++  TL +GLSQ T NLVA  L +N R
Sbjct:  113 MHGLNNALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILSTGKRPDLLSFVHTLCKGLSQPTTNLVAGCLQLNAR 192          
BLAST of Neurogenic differentiation factor vs. Ensembl Cavefish
Match: neurod2 (neuronal differentiation 2 [Source:NCBI gene;Acc:114435])

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-24
Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+R+G  PD ++Y +TL +GLSQ T NLVA  L ++ R
Sbjct:  124 MHDLNSALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRNGKRPDVVSYVQTLCKGLSQPTTNLVAGCLQLSAR 203          
BLAST of Neurogenic differentiation factor vs. Ensembl Cavefish
Match: neurod6b (neurogenic differentiation factor 6-B-like [Source:NCBI gene;Acc:103029581])

HSP 1 Score: 98.9821 bits (245), Expect = 5.635e-24
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHIN 507
            MHGLN ALESLR  VP  + TQKLSKIETLRLA NYI ALS+ +R+G  PD L +A+TL  GLSQ T NLVA  L +N
Sbjct:   84 MHGLNDALESLRRVVPCHSKTQKLSKIETLRLARNYIRALSETLRAGTRPDLLAFARTLCAGLSQPTTNLVAGCLQLN 161          
BLAST of Neurogenic differentiation factor vs. Ensembl Cavefish
Match: neurod4 (neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1])

HSP 1 Score: 93.5893 bits (231), Expect = 8.556e-22
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINP 510
            MHGLN AL++LR  +P ++ TQKLSKIETLRLA NYIWALS+++ +G  P++  + + L +GLSQ T+NLVA  L + P
Sbjct:   99 MHGLNDALDNLRQVMPCYSKTQKLSKIETLRLARNYIWALSEVLENGQSPESHGFMEMLCKGLSQPTSNLVAGCLQLGP 177          
BLAST of Neurogenic differentiation factor vs. Ensembl Sea Lamprey
Match: neurod1 (neuronal differentiation 1 [Source:NCBI gene;Acc:30169])

HSP 1 Score: 110.538 bits (275), Expect = 4.394e-29
Identity = 52/80 (65.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+R+G  PD L++ +TL  GLSQ TANL+A  L +NPR
Sbjct:   36 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRAGTSPDLLSFVQTLCRGLSQPTANLIAGCLQLNPR 115          
BLAST of Neurogenic differentiation factor vs. Ensembl Sea Lamprey
Match: ENSPMAT00000006843.1 (pep scaffold:Pmarinus_7.0:GL488467:178:1220:1 gene:ENSPMAG00000006182.1 transcript:ENSPMAT00000006843.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.2914 bits (116), Expect = 1.357e-7
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIV 405
            MH LN AL++LR  +P      +L+KIETLR A NYIW L++ +
Sbjct:   56 MHNLNDALDALRGVLPTLPDDARLTKIETLRFAYNYIWVLTETL 99          
BLAST of Neurogenic differentiation factor vs. Ensembl Sea Lamprey
Match: si:dkey-34f9.3 (si:dkey-34f9.3 [Source:ZFIN;Acc:ZDB-GENE-081104-410])

HSP 1 Score: 47.3654 bits (111), Expect = 3.235e-7
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFP 423
            M  +N A E LR HVP F + ++LSKI+TLRLA  YI  L  I+ S   P
Sbjct:   46 MLSINSAFEELRCHVPTFPYEKRLSKIDTLRLAIAYIALLRDILLSDTDP 95          
BLAST of Neurogenic differentiation factor vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004072.1 (pep scaffold:Pmarinus_7.0:GL492732:1750:4325:-1 gene:ENSPMAG00000003727.1 transcript:ENSPMAT00000004072.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.595 bits (109), Expect = 1.918e-6
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRS 411
            M  +N A E LR H+P   + ++LSK++TLRLA  YI  L ++V S
Sbjct:  144 MQSINAAFEGLRAHIPTLPYEKRLSKVDTLRLAIGYISFLGELVHS 189          
BLAST of Neurogenic differentiation factor vs. Ensembl Nematostella
Match: EDO42924 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZZ0])

HSP 1 Score: 48.1358 bits (113), Expect = 6.576e-8
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  277 HGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSG 414
            H +N A  +LRL +P     +KLSKIETLRLAS+YI  LS I+ SG
Sbjct:   15 HSVNAAFNALRLLIPTEPSDRKLSKIETLRLASSYIAHLSTILISG 60          
BLAST of Neurogenic differentiation factor vs. Ensembl Nematostella
Match: EDO43849 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RXI0])

HSP 1 Score: 45.8246 bits (107), Expect = 3.699e-7
Identity = 19/44 (43.18%), Postives = 30/44 (68.18%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIV 405
            M  +N A E LR H+P   + ++LSK++TLRLA  YI  L++++
Sbjct:   15 MQSINEAFEGLRKHIPTLPYEKRLSKVDTLRLAIGYIGFLTEMI 58          
BLAST of Neurogenic differentiation factor vs. Ensembl Nematostella
Match: EDO36266 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJ30])

HSP 1 Score: 46.595 bits (109), Expect = 4.096e-7
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVA 489
            +H ++ A ESLR  VP ++  QKLSK+  LRLA++YI AL+ +  S     +L   K   E + Q T  L A
Sbjct:   15 IHTMSEAFESLRKAVPSYSQDQKLSKLAILRLATSYISALADLTESDTSAKSL---KHFAECVEQCTRALQA 83          
BLAST of Neurogenic differentiation factor vs. Ensembl Nematostella
Match: EDO36265 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJ29])

HSP 1 Score: 46.9802 bits (110), Expect = 2.384e-6
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPV--FNHTQKLSKIETLRLASNYIWALSKIV 405
            MH LN A +SLR  +P   +N  +K SKI TLRLA +YI ALS I+
Sbjct:   80 MHSLNDAFDSLRKAIPKTNYNQEEKPSKIATLRLAIHYIAALSDIL 125          
BLAST of Neurogenic differentiation factor vs. Ensembl Medaka
Match: neurod1 (neuronal differentiation 1 [Source:NCBI gene;Acc:101157169])

HSP 1 Score: 107.457 bits (267), Expect = 9.272e-27
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MHGLN ALESLR  VP ++ TQKLSKIETLRLA NYIW LS+I+RSG  PD +++   L +GLSQ T NLVA  L +NPR
Sbjct:  103 MHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWTLSEILRSGKAPDLMSFVHALCKGLSQPTTNLVAGCLQLNPR 182          
BLAST of Neurogenic differentiation factor vs. Ensembl Medaka
Match: NEUROD2 (neuronal differentiation 2 [Source:NCBI gene;Acc:101159992])

HSP 1 Score: 103.605 bits (257), Expect = 2.508e-25
Identity = 51/80 (63.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYIWALS+I+RSG  PD ++Y +TL +GLSQ T NLVA  L +N R
Sbjct:  115 MHDLNSALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSR 194          
BLAST of Neurogenic differentiation factor vs. Ensembl Medaka
Match: neurod4 (neurogenic differentiation factor 4 [Source:NCBI gene;Acc:101168209])

HSP 1 Score: 100.908 bits (250), Expect = 2.230e-24
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINP 510
            MHGLN AL++LR  +P ++ TQKLSKIETLRLA NYIWALS+++ SG  P++L + + L +GLSQ T+NLVA  LH+ P
Sbjct:  110 MHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLESGQSPESLGFVEMLCKGLSQPTSNLVAGCLHLGP 188          
BLAST of Neurogenic differentiation factor vs. Ensembl Medaka
Match: neurod2 (neurogenic differentiation factor 2 [Source:NCBI gene;Acc:101171533])

HSP 1 Score: 93.9745 bits (232), Expect = 7.744e-22
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPR 513
            MH LN AL++LR  VP ++ TQKLSKIETLRLA NYI AL +I+R+G  PD ++Y + L +GLSQ T NLVA  L +N R
Sbjct:  116 MHDLNSALDNLRKVVPCYSKTQKLSKIETLRLAKNYILALGEILRNGKRPDVVSYVQMLCKGLSQPTTNLVAGCLQLNTR 195          
BLAST of Neurogenic differentiation factor vs. Ensembl Medaka
Match: ENSORLT00000027474.1 (neurogenic differentiation factor 4-like [Source:NCBI gene;Acc:101167928])

HSP 1 Score: 89.7373 bits (221), Expect = 2.614e-20
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINP 510
            MHGLN ALE+LR  +P ++ TQKLSKIETLRLA NYI ALS+ +  GL  ++  + +TL +GLSQ T+NLVA  L + P
Sbjct:  137 MHGLNDALENLRSIMPCYSKTQKLSKIETLRLARNYICALSEALEGGLSTESRVFMETLCKGLSQPTSNLVAGCLQLGP 215          
BLAST of Neurogenic differentiation factor vs. Planmine SMEST
Match: SMESG000066244.1 (SMESG000066244.1)

HSP 1 Score: 374.4 bits (960), Expect = 1.939e-132
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1
Query:   94 MFDLNLKIFTFSSDSLMMTTSSVDXXXXXXXXXXXXXMTXXXXXXXXXXXXXXXXXXXXXMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLLXXXXXXXXXXXEKLYDCQELDPTDQQYPVNTIIKYPFYCQSSNQTGQVYEEKNDFSPNSSFMHQECALNVDNYVIQGPFPCALCNHY 780
            MFDLNLKIFTFSSDSLMMTTSSVDIKIPKKRGPKKKPMTEERRERLVQRRARANSRERNRMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLLSKSSSNFTNSSEKLYDCQELDPTDQQYPVNTIIKYPFYCQSSNQTGQVYEEKNDFSPNSSFMHQECALNVDNYVIQGPFPCALCNHY
Sbjct:    1 MFDLNLKIFTFSSDSLMMTTSSVDIKIPKKRGPKKKPMTEERRERLVQRRARANSRERNRMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLLSKSSSNFTNSSEKLYDCQELDPTDQQYPVNTIIKYPFYCQSSNQTGQVYEEKNDFSPNSSFMHQECALNVDNYVIQGPFPCALCNHY 229          
BLAST of Neurogenic differentiation factor vs. Planmine SMEST
Match: SMESG000029000.1 (SMESG000029000.1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.014e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIV 405
            M+ LN A +SLR  VP F + ++LS+IETLRLA  YI  +++++
Sbjct:  157 MYSLNEAFDSLRKRVPTFAYEKRLSRIETLRLAITYICFMTELL 200          
BLAST of Neurogenic differentiation factor vs. Planmine SMEST
Match: SMESG000029000.1 (SMESG000029000.1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.036e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIV 405
            M+ LN A +SLR  VP F + ++LS+IETLRLA  YI  +++++
Sbjct:  150 MYSLNEAFDSLRKRVPTFAYEKRLSRIETLRLAITYICFMTELL 193          
BLAST of Neurogenic differentiation factor vs. Planmine SMEST
Match: SMESG000044960.1 (SMESG000044960.1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.967e-6
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRSGLFPDTLTYAKT-LTEGLSQTTANLVASSL 498
            M  +N A E LR+H+P   + ++LSK++TLR+A  YI  L  I++     +   Y KT +     QT +NL +S L
Sbjct:   59 MQSINDAFEKLRVHIPTMPYEKRLSKVDTLRMAIGYINFLGGIMQVDQGEE--IYEKTFIANDQFQTESNLKSSHL 132          
BLAST of Neurogenic differentiation factor vs. Planmine SMEST
Match: SMESG000000956.1 (SMESG000000956.1)

HSP 1 Score: 47.7506 bits (112), Expect = 3.044e-6
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  274 MHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWALSKIVRS 411
            M  +N A E LR H+P   + ++LSK++TLRLA +YI  L ++++S
Sbjct:  115 MQSINEAFEGLRCHIPTMPYEKRLSKVDTLRLAISYIGFLQELIKS 160          
The following BLAST results are available for this feature:
BLAST of Neurogenic differentiation factor vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
NEUROD14.570e-2765.00neuronal differentiation 1 [Source:HGNC Symbol;Acc... [more]
NEUROD61.947e-2563.75neuronal differentiation 6 [Source:HGNC Symbol;Acc... [more]
NEUROD21.056e-2463.75neuronal differentiation 2 [Source:HGNC Symbol;Acc... [more]
NEUROD49.992e-2255.00neuronal differentiation 4 [Source:HGNC Symbol;Acc... [more]
NEUROG32.097e-957.78neurogenin 3 [Source:HGNC Symbol;Acc:HGNC:13806][more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
cnd-19.521e-2254.88Neurogenic differentiation factor 1 [Source:UniPr... [more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tap5.599e-853.19gene:FBgn0015550 transcript:FBtr0075216[more]
cato2.021e-651.06gene:FBgn0024249 transcript:FBtr0087183[more]
Fer22.261e-642.37gene:FBgn0038402 transcript:FBtr0344011[more]
Fer22.384e-642.37gene:FBgn0038402 transcript:FBtr0301709[more]
Fer22.459e-642.37gene:FBgn0038402 transcript:FBtr0344010[more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
neurod14.514e-2866.25neuronal differentiation 1 [Source:NCBI gene;Acc:3... [more]
neurod6a1.234e-2665.00neuronal differentiation 6a [Source:NCBI gene;Acc:... [more]
neurod6a1.234e-2665.00neuronal differentiation 6a [Source:NCBI gene;Acc:... [more]
neurod21.278e-2547.93neuronal differentiation 2 [Source:NCBI gene;Acc:1... [more]
neurod6b1.393e-2563.75neuronal differentiation 6b [Source:NCBI gene;Acc:... [more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
neurod16.368e-2765.00neuronal differentiation 1 [Source:NCBI gene;Acc:1... [more]
neurod61.081e-2563.75neuronal differentiation 6 [Source:NCBI gene;Acc:7... [more]
neurod25.598e-2563.75neuronal differentiation 2 [Source:NCBI gene;Acc:7... [more]
neurod42.345e-2053.66neuronal differentiation 4 [Source:NCBI gene;Acc:1... [more]
neurog11.367e-962.22neurogenin 1 [Source:NCBI gene;Acc:100144651][more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Neurod12.788e-2765.00neurogenic differentiation 1 [Source:MGI Symbol;Ac... [more]
Neurod61.364e-2563.75neurogenic differentiation 6 [Source:MGI Symbol;Ac... [more]
Neurod27.556e-2563.75neurogenic differentiation 2 [Source:MGI Symbol;Ac... [more]
Neurod42.658e-2053.75neurogenic differentiation 4 [Source:MGI Symbol;Ac... [more]
Neurog33.902e-1057.78neurogenin 3 [Source:MGI Symbol;Acc:MGI:893591][more]
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BLAST of Neurogenic differentiation factor vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|O42202|NDF1_DANRE3.408e-2766.25Neurogenic differentiation factor 1 OS=Danio rerio... [more]
sp|Q91616|NDF1_XENLA6.241e-2766.25Neurogenic differentiation factor 1 OS=Xenopus lae... [more]
sp|Q60430|NDF1_MESAU1.836e-2665.00Neurogenic differentiation factor 1 OS=Mesocricetu... [more]
sp|Q60867|NDF1_MOUSE1.950e-2665.00Neurogenic differentiation factor 1 OS=Mus musculu... [more]
sp|Q64289|NDF1_RAT2.182e-2665.00Neurogenic differentiation factor 1 OS=Rattus norv... [more]
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BLAST of Neurogenic differentiation factor vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0A7M6A34.270e-6197.99Neurogenic differentiation factor (Fragment) OS=Sc... [more]
R7TSH49.906e-2967.07BHLH domain-containing protein (Fragment) OS=Capit... [more]
V4AVY56.238e-2860.98BHLH domain-containing protein (Fragment) OS=Lotti... [more]
A0A223GC671.604e-2767.07NeuroD (Fragment) OS=Capitella teleta OX=283909 PE... [more]
A0A210Q1G11.658e-2764.63Neurogenic differentiation factor 6-A OS=Mizuhopec... [more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
neurod13.181e-2765.00neuronal differentiation 1 [Source:NCBI gene;Acc:3... [more]
neurod6a6.689e-2663.75neuronal differentiation 6a [Source:NCBI gene;Acc:... [more]
neurod21.227e-2461.25neuronal differentiation 2 [Source:NCBI gene;Acc:1... [more]
neurod6b5.635e-2465.38neurogenic differentiation factor 6-B-like [Source... [more]
neurod48.556e-2255.70neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GE... [more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 4
Match NameE-valueIdentityDescription
neurod14.394e-2965.00neuronal differentiation 1 [Source:NCBI gene;Acc:3... [more]
ENSPMAT00000006843.11.357e-750.00pep scaffold:Pmarinus_7.0:GL488467:178:1220:1 gene... [more]
si:dkey-34f9.33.235e-750.00si:dkey-34f9.3 [Source:ZFIN;Acc:ZDB-GENE-081104-41... [more]
ENSPMAT00000004072.11.918e-645.65pep scaffold:Pmarinus_7.0:GL492732:1750:4325:-1 ge... [more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Neurogenic differentiation factor vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 4
Match NameE-valueIdentityDescription
EDO429246.576e-856.52Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO438493.699e-743.18Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO362664.096e-740.28Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO362652.384e-654.35Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Neurogenic differentiation factor vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
neurod19.272e-2765.00neuronal differentiation 1 [Source:NCBI gene;Acc:1... [more]
NEUROD22.508e-2563.75neuronal differentiation 2 [Source:NCBI gene;Acc:1... [more]
neurod42.230e-2459.49neurogenic differentiation factor 4 [Source:NCBI g... [more]
neurod27.744e-2258.75neurogenic differentiation factor 2 [Source:NCBI g... [more]
ENSORLT00000027474.12.614e-2056.96neurogenic differentiation factor 4-like [Source:N... [more]
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BLAST of Neurogenic differentiation factor vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000066244.11.939e-132100.00SMESG000066244.1[more]
SMESG000029000.11.014e-647.73SMESG000029000.1[more]
SMESG000029000.11.036e-647.73SMESG000029000.1[more]
SMESG000044960.12.967e-636.84SMESG000044960.1[more]
SMESG000000956.13.044e-643.48SMESG000000956.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010251 ID=SMED30010251|Name=Neurogenic differentiation factor|organism=Schmidtea mediterranea sexual|type=transcript|length=828bp
TTGAAAAGTTTTTTTTTGAGTAAAAGTTCAACAGTCTCTATTTCTTTCAT
AGTAATCATTTGACACAAGAAATGTTTACATTAATTTCGAGAAATGTTTG
ATTTAAATCTTAAAATATTTACATTTTCTTCAGATAGTTTGATGATGACC
ACTTCATCTGTTGACATTAAAATTCCAAAAAAACGAGGGCCAAAGAAGAA
GCCGATGACAGAAGAACGACGAGAAAGATTAGTGCAAAGACGTGCCAGGG
CAAACTCAAGAGAAAGAAACCGAATGCACGGATTAAATCATGCTTTAGAA
AGTTTGAGATTGCATGTTCCAGTTTTTAATCACACTCAAAAATTGAGCAA
AATCGAAACCCTTCGATTAGCTAGTAACTATATATGGGCTTTATCAAAAA
TTGTTCGCAGTGGTTTATTTCCCGATACATTAACGTATGCAAAAACATTG
ACAGAAGGTTTATCCCAAACAACAGCAAACTTGGTTGCATCATCTCTTCA
TATTAATCCGAGATTATTGAGCAAATCTTCAAGTAACTTTACAAATTCTT
CAGAAAAATTATACGACTGCCAGGAATTAGATCCAACAGATCAACAATAT
CCTGTTAATACAATAATAAAATATCCATTTTATTGTCAGTCCTCTAATCA
AACCGGGCAAGTTTATGAAGAGAAAAATGATTTTAGCCCTAATTCATCAT
TTATGCATCAAGAATGTGCTTTGAATGTTGACAATTATGTCATCCAAGGT
CCATTTCCATGTGCACTGTGTAATCATTATTAATGTTATTTATATTTTTC
TTGTAAATATAATTTATAAATAAAAAAA
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protein sequence of SMED30010251-orf-1

>SMED30010251-orf-1 ID=SMED30010251-orf-1|Name=SMED30010251-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=230bp
MFDLNLKIFTFSSDSLMMTTSSVDIKIPKKRGPKKKPMTEERRERLVQRR
ARANSRERNRMHGLNHALESLRLHVPVFNHTQKLSKIETLRLASNYIWAL
SKIVRSGLFPDTLTYAKTLTEGLSQTTANLVASSLHINPRLLSKSSSNFT
NSSEKLYDCQELDPTDQQYPVNTIIKYPFYCQSSNQTGQVYEEKNDFSPN
SSFMHQECALNVDNYVIQGPFPCALCNHY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000103central nervous system
PLANA:0000120progenitor cell
PLANA:0000121stem cell
PLANA:0000429neoblast
PLANA:0002109X1 cell
PLANA:0002142parenchyma
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf
IPR032652Neurod1
IPR011598bHLH_dom
IPR022575Neurogenic_DUF
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0048666neuron development
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 54..106
e-value: 3.9E-15
score: 66.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 49..98
e-value: 7.2E-15
score: 54.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 48..100
score: 15.809
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 47..105
e-value: 5.61432E-16
score: 67.6243
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 48..107
e-value: 7.7E-23
score: 82.0
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 48..106
IPR022575Neurogenic differentiation factor, domain of unknown functionPFAMPF12533Neuro_bHLHcoord: 109..176
e-value: 6.4E-11
score: 43.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..55
NoneNo IPR availablePANTHERPTHR19290BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATEDcoord: 27..184
IPR032652Neurogenic differentiation factor 1PANTHERPTHR19290:SF134coord: 27..184