SMED30010198

Overview
NameSMED30010198
Smed IDSMED30010198
Length (bp)1704
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30010198 (SMED30010198) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30010198 (SMED30010198) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30010198

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
muscle cellSMED30010198 dd_Smed_v4_15845_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30010198 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005082:18237..19642 -5660
Homology
[Close]
BLAST of SMED30010198 vs. TrEMBL
Match: A0A0X9SRF7 (Putative BRCA2 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.249e-11
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = -2 
Query: 1431 MLDFNVRKFDSRSTTEAEKRIKDITELLQIESQSLISAFYIL*KD*GAVLWKCYRDSCSTDEKAKNWFVDCFTIKKQLQDR 1673
            +L+FN+RKF+ R+  EAE+ +KDI + L I   SLI  F +L  +   + WK ++    TDE A++WFVD FT +K + D+
Sbjct:  347 ILNFNIRKFNGRNIFEAEQLLKDIDDWLGIRDLSLIGIFDLLLSEEAKIPWKDFKTIGLTDEDARSWFVDTFTSQKSIADK 427

HSP 2 Score: 31.9574 bits (71), Expect = 1.249e-11
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = -1 
Query: 1363 KTITRQIFDLNAVKQKANDRLATFEIRVR 1449
            K+I  +I+DL  VKQK N+  ATFE+RV+
Sbjct:  422 KSIADKIYDLAHVKQK-NEGFATFELRVK 449
[Close]
BLAST of SMED30010198 vs. Planmine SMEST
Match: SMESG000078154.1 (SMESG000078154.1)

HSP 1 Score: 184.496 bits (467), Expect = 2.536e-77
Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = -3 
Query:  881 TIFESRNTNEIQVNSYANVIRRENKNNIQEDVKSKNYTNRHQQNKFLIRPQYVQDDNKYISIANENYNKNIPRKQPSVSLKSIARKLYDESRGIKPSQPEILNP 1192
            +IFESRNTN+IQVNSYANVIRRENKNN QEDVKSKNYTNR+QQN FL  PQYVQDDNKY +IANENYNKN+PRKQPSVSLKSIARKLYDESRG KP QPEILNP
Sbjct:  126 SIFESRNTNKIQVNSYANVIRRENKNNNQEDVKSKNYTNRYQQNNFLKCPQYVQDDNKYTAIANENYNKNMPRKQPSVSLKSIARKLYDESRGTKPHQPEILNP 229

HSP 2 Score: 125.176 bits (313), Expect = 2.536e-77
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = -1 
Query: 1213 IFDLNAVKQKANDRLATFEIRVRNMVKTIFNSGMSAEDIVQDIIANKVWDDRVKEILLKKSSIQMEEVRSTAK 1431
            IFDLN+VKQ+AN+R  TFEIRVRN+VKT+FNSGMS EDIV+DIIANKV DDRVKEILL KSSIQMEEVRSTAK
Sbjct:   46 IFDLNSVKQEANERFTTFEIRVRNLVKTVFNSGMSEEDIVRDIIANKVRDDRVKEILLTKSSIQMEEVRSTAK 118
[Close]
BLAST of SMED30010198 vs. Planmine SMEST
Match: SMESG000017400.1 (SMESG000017400.1)

HSP 1 Score: 240.736 bits (613), Expect = 1.556e-76
Identity = 130/180 (72.22%), Postives = 153/180 (85.00%), Query Frame = -3 
Query:  662 IRHTIFESRNTNEIQVNSYANVIRRENKNNIQEDVKSKNYTNRHQQNKFLIRPQYVQDDNKYISIANENYNKNIPRKQPSVSLKSIARKLYDESRGIKPSQPEILNPGNCFCCGENGNRRYQCPMKNKCLICDKENHTFGKCHLMGNHRSQMRRTVACIYXXXXXXXXXXXXNSFASKDQ 1201
            I  +I E RNTNEIQVNSY+N +RRENK++ QED+K KNY NR+QQ+ FL R QYVQD+NKY +IAN+NY KN+PRKQPSVSLKSI RK+YD SR IK  QPEILNPGNCF C E+  RRYQ PMKNKCLIC KENHTFG+CHL+G+HR Q RRTVACI+EEDNND+NF+DNNS+AS ++
Sbjct:   45 ITLSISEIRNTNEIQVNSYSNAVRRENKSDNQEDIKLKNYINRYQQSNFLKRSQYVQDNNKYTAIANKNYYKNMPRKQPSVSLKSITRKIYDGSRVIKQRQPEILNPGNCFYCEESALRRYQYPMKNKCLICGKENHTFGRCHLLGSHRPQRRRTVACIHEEDNNDKNFDDNNSYASGER 224

HSP 2 Score: 65.855 bits (159), Expect = 1.556e-76
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = -1 
Query: 1213 MSAEDIVQDIIANKVWDDRVKEILLKKSSIQMEEVRSTAK 1332
            MS EDIV+DII+NKV +DRVKEILL KS IQMEEVRSTAK
Sbjct:    1 MSEEDIVRDIISNKVREDRVKEILLTKSRIQMEEVRSTAK 40
[Close]
BLAST of SMED30010198 vs. Planmine SMEST
Match: SMESG000029320.1 (SMESG000029320.1)

HSP 1 Score: 111.694 bits (278), Expect = 1.192e-61
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = -1 
Query:  256 CFYFVSGIEQLNLERKRNDIKRDVMYKTIDKRKWSLMTVNGVDVEMLWDSGAVMSRSMCEKIGNPSVGESGITLRGVFSSGNEKPLGSTIVSVLWNGKVRKISIIIVEKIKPEFIGSVETI 618
            C +FVS +E ++  +KRN  K+DV++K  D RKWS+M +NG  VEMLWDSGA + R M EK     + +S   L GVFS  +EKPLGS  +   WN K R++++IIV KI P+FIG V T+
Sbjct:  242 CLHFVSRVETVDEFKKRNVEKKDVIFKKDDDRKWSMMEINGFHVEMLWDSGASI-RVMSEKCWR--LIDSRERLSGVFSKEDEKPLGSVKIFAKWNKKFRELNVIIVRKIHPDFIGGVYTM 359

HSP 2 Score: 90.8929 bits (224), Expect = 1.192e-61
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = -2 
Query:    3 GVW--KQFGIKILEINNIEATLVNQNYSDLVGIKKAMSFLNKEKNPK----IERFGNIFMVSKFDLGFTDLVSHEMKING*PIMQAPRRQPMHM*G 272
            GV+  K FG+++ E+NNIE++LVN+  +D   +K  +  L  +KN K    I +F NIFM S+FDLG T +++HE+K +G PI+Q PRRQPMH+ G
Sbjct:  355 GVYTMKIFGMELKEVNNIESSLVNKRVTDSDRLKNTLLTLKFDKNSKLGTLISQFSNIFMASRFDLGHTKVITHEIKTSGPPILQNPRRQPMHLEG 450

HSP 3 Score: 75.8702 bits (185), Expect = 1.192e-61
Identity = 50/157 (31.85%), Postives = 85/157 (54.14%), Query Frame = -3 
Query:  722 VNSYANVIRRENKN--NIQEDVKSKNYTNRHQQNKFLIRPQYV---QDDNKYISIANENYNKNI-PRKQPSVSLK---SIARKLYDESRGIKPSQPEILNPGNCFCCGENGNRRYQCPMKNKCLICDKENHTFGKCHLMGNHRS---QMRRTVACIY 1156
            +++ AN+ R E +N   + E  +  +   R ++ + +I+  YV   QD  K      +++N  I P  Q  ++ +       + +D+    KP + E L PG CFCCG+N + R++C +K+KCLIC KE H+F  C+L+   RS   ++ R V CI+
Sbjct:   60 ISTKANITREEIRNLAKVYEAREGYDTKKRSEEVQAVIKSTYVNVTQDKQK--QWIQKSFNNRIYPNLQTEITYQNRNERNERQFDKVTTFKPVE-ERLKPGQCFCCGQNDHLRFECTLKDKCLICGKEGHSFRSCNLLVKSRSNTQRLERRVYCIH 213

HSP 4 Score: 65.0846 bits (157), Expect = 1.016e-10
Identity = 30/74 (40.54%), Postives = 55/74 (74.32%), Query Frame = -1 
Query: 1213 QIFDLNAVKQKANDRLATFEIRVRNMVKTIFNSGMSAEDIVQDIIANKVWDDRVKEILLKKSSIQMEEVRSTAK 1434
            +I +L++V+Q  ++R  TFEIRV+ +V  +++ G+S E+IV+ I+ ++V +DR+KE +  K++I  EE+R+ AK
Sbjct:    3 KICELSSVRQNPDERFVTFEIRVKKLVDEVYDCGISKENIVKLILCHRVQNDRLKENISTKANITREEIRNLAK 76
[Close]
BLAST of SMED30010198 vs. Planmine SMEST
Match: SMESG000029278.1 (SMESG000029278.1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.930e-60
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = -1 
Query:  274 VSGIEQLNLERKRNDIKRDVMYKTIDKRKWSLMTVNGVDVEMLWDSG---AVMSRSMCEKIGNPSVGESGITLRGVFSSGNEKPLGSTIVSVLWNGKVRKISIIIVEKIKPEFI 606
            V   ++LN+E+K      DVM+K  D RKW++M +NG  V+MLWDSG   +VMS      IG+P + ES I L GVFS  ++KPLGS  +   WN   R+++I  V KI P+FI
Sbjct:  345 VDEFKKLNVEKK------DVMFKKDDDRKWTMMEINGYHVKMLWDSGTSISVMSEKCWRLIGSPILIESRIRLSGVFSKEDKKPLGSVKIVAKWNKTFRELNITTVRKIHPDFI 452

HSP 2 Score: 89.3521 bits (220), Expect = 8.930e-60
Identity = 52/150 (34.67%), Postives = 82/150 (54.67%), Query Frame = -3 
Query:  722 NSYANVIRRENKNNIQEDVKSKNYTNRHQQNKFLIRPQYVQDDNKYISIANENYNKNIP---RKQPSVSLKSIARKLYDESRGIKPSQPEILNPGNCFCCGENGNRRYQCPMKNKCLICDKENHTFGKCHLMGNHRS---QMRRTVACIY 1153
            ++Y NV   + K  IQ+   ++ Y NR  +  +  R +  +     +    + YN+      R  P VS+K IARK+Y+   G+     E L PG CFCCG+N + +++ P+K+KCLIC KE H+F  C+L+   RS   ++ R V CI+
Sbjct:  162 STYVNVALDKQKQWIQKSFNNRIYPNRQTEITYQNRNERNERQFDKVKPVAKQYNEKTTTERRPPPLVSMKHIARKIYNRCCGLPEPVEERLKPGQCFCCGQNDHMQFEYPLKDKCLICGKEGHSFRSCNLLVKSRSNTQRLERRVYCIH 311

HSP 3 Score: 73.1738 bits (178), Expect = 8.930e-60
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = -2 
Query: 1431 LESLSKQAHSMLDFNVRKFDSRSTTEAEKRIKDITELLQIESQSLISAFYIL*KD*GAVLWKCYRDSCSTDEKAKNWFVDCFTIKKQLQDR 1703
            ++ L KQA  +L+FNVR+F  R  TEAE+ +KDI + + +   +L+S F +L  +  + LWK ++D  +T E A+ WF D FT KK + D+
Sbjct:    1 MKCLPKQAKDILNFNVRRFYGRCMTEAEQWLKDIEDWMLLNDLNLVSIFDLLFSEEASFLWKKFKDISTTSENAREWFNDTFTKKKSIMDK 91

HSP 4 Score: 33.8834 bits (76), Expect = 8.930e-60
Identity = 19/59 (32.20%), Postives = 32/59 (54.24%), Query Frame = -1 
Query: 1276 KTITRQIFDLNAVKQKANDRLATFEIRVRNMVKTIFNSGMSAEDIVQDIIAN-KVWDDR 1449
            K+I  +I  L++V+Q  N+R  TF+IRV+ +V   +      +    D I   KV++ R
Sbjct:   86 KSIMDKICKLSSVRQNHNERFVTFKIRVKKLVDEAYEWNFKRKHRQTDFIPQTKVYEAR 144
[Close]
BLAST of SMED30010198 vs. Planmine SMEST
Match: SMESG000072638.1 (SMESG000072638.1)

HSP 1 Score: 192.586 bits (488), Expect = 8.096e-56
Identity = 90/117 (76.92%), Postives = 98/117 (83.76%), Query Frame = -3 
Query:  722 HQQNKFLIRPQYVQDDNKYISIANENYNKNIPRKQPSVSLKSIARKLYDESRGIKPSQPEILNPGNCFCCGENGNRRYQCPMKNKCLICDKENHTFGKCHLMGNHRSQMRRTVACIY 1072
            +QQ+  L R Q VQDDNKY +IANENYN+N+PRKQPSVSLK IARKLYDES GI P Q EI N GNC CCGENG+RRYQC M NKCLIC KE HTFG+CHL+GNHR QMRRTVACIY
Sbjct:    2 YQQSNVLKRSQSVQDDNKYTAIANENYNRNMPRKQPSVSLKIIARKLYDESLGINPRQLEIPNSGNCICCGENGHRRYQCSMTNKCLICRKEKHTFGRCHLLGNHRPQMRRTVACIY 118

HSP 2 Score: 45.0542 bits (105), Expect = 8.096e-56
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = -1 
Query:  565 KKTWKNHGESHCFYFVSGIEQLNLERKRN 651
            +K  K HG SHCF+ VSGIEQLN ER+ N
Sbjct:  144 RKHGKKHGGSHCFHLVSGIEQLNFERRLN 172
The following BLAST results are available for this feature:
BLAST of SMED30010198 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0X9SRF71.249e-1141.98Putative BRCA2 OS=Schmidtea mediterranea OX=79327 ... [more]
back to top
BLAST of SMED30010198 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30010198 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000078154.12.536e-7788.46SMESG000078154.1[more]
SMESG000017400.11.556e-7672.22SMESG000017400.1[more]
SMESG000029320.11.192e-6149.59SMESG000029320.1[more]
SMESG000029278.18.930e-6045.61SMESG000029278.1[more]
SMESG000072638.18.096e-5676.92SMESG000072638.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010198 ID=SMED30010198|Name=SMED30010198|organism=Schmidtea mediterranea sexual|type=transcript|length=1704bp
TTACCTTACATATGCATAGGTTGCCTTCTAGGGGCTTGCATAATTGGTCA
TCCATTTATTTTCATTTCATGGCTAACTAGGTCTGTGAACCCGAGATCAA
ATTTTGACACCATAAATATATTCCCGAATCTTTCAATCTTTGGGTTTTTC
TCCTTGTTTAGAAACGACATTGCTTTCTTTATCCCTACCAAATCTGAATA
ATTTTGATTAACTAAAGTTGCTTCAATATTATTTATTTCTAAAATTTTGA
TTCCAAATTGTTTCCACACTCCCAATAAACTCAGGTTTAATTTTTTCAAC
TATGATTATGCTAATTTTACGTACTTTTCCATTCCATAAAACACTGACAA
TAGTACTTCCTAGTGGCTTTTCGTTTCCAGATGAAAATACTCCACGAAGA
GTAATACCACTCTCACCGACGCTTGGGTTCCCTATTTTTTCACACATTGA
TCTGCTCATTACTGCACCTGAATCCCACAACATTTCAACATCCACTCCAT
TTACTGTCATTAAACTCCATTTCCGTTTATCTATGGTCTTATACATCACA
TCCCTCTTTATATCATTTCGTTTTCTTTCTAAATTCAATTGCTCAATTCC
ACTGACGAAATAAAAGCAATGGGATTCTCCGTGGTTTTTCCATGTTTTCT
TTCCTGCTCAATTGATCTTTACTAGCAAATGAATTATTATCATTAAAATT
TTCATCATTGTTATCTTCTTCATAAATACATGCAACAGTTCGTCTCATTT
GCGATCTGTGGTTACCCATCAGATGACATTTTCCAAAGGTATGGTTTTCC
TTATCACAAATTAAACATTTATTTTTCATTGGACACTGATAACGTCTATT
CCCATTTTCTCCACAACAAAAACAATTACCTGGGTTCAGAATCTCTGGTT
GGCTTGGTTTAATTCCGCGACTTTCATCGTATAGTTTTCTAGCTATACTT
TTCAATGACACGCTTGGTTGCTTCCTTGGGATATTTTTATTATAATTTTC
ATTAGCGATCGATATATATTTATTGTCATCTTGAACATATTGGGGACGTA
TTAAAAATTTATTCTGTTGATGCCTATTTGTATAATTTTTTGACTTGACA
TCTTCTTGAATATTATTTTTATTTTCTCTCCGTATCACATTAGCGTAACT
GTTTACTTGAATTTCATTAGTATTTCTACTCTCGAAAATTGTGTGTCTGA
TTTTCATGTTTTTTTAGCAGTTGATCTAACTTCCTCCATCTGTATGCTTG
ACTTTTTCAATAGAATTTCTTTGACTCGATCATCCCATACTTTATTCGCA
ATAATATCTTGAACAATGTCTTCTGCGCTCATTCCTGAATTAAATATGGT
TTTAACCATATTTCGGACTCTAATCTCAAATGTTGCCAATCTGTCATTTG
CTTTTTGTTTCACGGCATTTAAATCAAAGATCTGTCTTGTAATTGTTTTT
TAATGGTAAAACAATCTACAAACCAGTTTTTTGCTTTTTCATCTGTTGAA
CAGCTGTCTCTATAACACTTCCATAACACTGCACCTTAATCTTTCTATAA
TATATAGAAAGCACTAATTAAACTTTGACTTTCGATTTGCAGCAATTCGG
TAATATCTTTTATCCGTTTTTCAGCTTCCGTCGTGCTTCGACTATCGAAC
TTCCGTACATTAAAATCAAGCATGCTGTGAGCCTGCTTTGATAACGATTC
CAAG
back to top

protein sequence of SMED30010198-orf-1

>SMED30010198-orf-1 ID=SMED30010198-orf-1|Name=SMED30010198-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=106bp
MYKTIDKRKWSLMTVNGVDVEMLWDSGAVMSRSMCEKIGNPSVGESGITL
RGVFSSGNEKPLGSTIVSVLWNGKVRKISIIIVEKIKPEFIGSVETIWNQ
NFRNK*
back to top

protein sequence of SMED30010198-orf-2

>SMED30010198-orf-2 ID=SMED30010198-orf-2|Name=SMED30010198-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=205bp
MKIRHTIFESRNTNEIQVNSYANVIRRENKNNIQEDVKSKNYTNRHQQNK
FLIRPQYVQDDNKYISIANENYNKNIPRKQPSVSLKSIARKLYDESRGIK
PSQPEILNPGNCFCCGENGNRRYQCPMKNKCLICDKENHTFGKCHLMGNH
RSQMRRTVACIYEEDNNDENFNDNNSFASKDQLSRKENMEKPRRIPLLLF
RQWN*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR011528NERD
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 77..94