Splicing factor arginine:serine rich
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30010103 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15Note: Hover over icons to view figure legend
Homology
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SREK1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:17882]) HSP 1 Score: 131.724 bits (330), Expect = 2.489e-36 Identity = 89/228 (39.04%), Postives = 123/228 (53.95%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVT------GILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYM-----RGLEESNRRIVRDSDS 867 V Y+ + A HL NTVF DRALIV+P C G+IP+ + A + AP T+T G+LP P + + + G ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R VR++ S Sbjct: 64 VCYVKFRDPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEESKALSLLAPAPTMTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 287 HSP 2 Score: 41.5874 bits (96), Expect = 2.489e-36 Identity = 18/52 (34.62%), Postives = 35/52 (67.31%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +++IQ++N+++ VT E ++TLF F+G I E ++Y + L +KV + K+ Sbjct: 18 TSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKF 69
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SREK1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:17882]) HSP 1 Score: 95.1301 bits (235), Expect = 5.038e-20 Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1 Query: 400 GILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 G+LP P + + + G ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP Sbjct: 9 GLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKP 147
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SRSF11 (serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782]) HSP 1 Score: 44.2838 bits (103), Expect = 1.017e-9 Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N++ + + E ++TLFGF+G I E +++ + L ++V F K+ Sbjct: 34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83 HSP 2 Score: 39.2762 bits (90), Expect = 1.017e-9 Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396 V ++ + A A HL NTVF DRALIV+P A+ G IPD A + AP V Sbjct: 78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SRSF11 (serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782]) HSP 1 Score: 43.5134 bits (101), Expect = 2.129e-9 Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N++ + + E ++TLFGF+G I E +++ + L ++V F K+ Sbjct: 34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83 HSP 2 Score: 39.2762 bits (90), Expect = 2.129e-9 Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396 V ++ + A A HL NTVF DRALIV+P A+ G IPD A + AP V Sbjct: 78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SRSF11 (serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782]) HSP 1 Score: 43.1282 bits (100), Expect = 2.217e-9 Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N++ + + E ++TLFGF+G I E +++ + L ++V F K+ Sbjct: 34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83 HSP 2 Score: 39.2762 bits (90), Expect = 2.217e-9 Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396 V ++ + A A HL NTVF DRALIV+P A+ G IPD A + AP V Sbjct: 78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
BLAST of Splicing factor arginine:serine rich vs. Ensembl Celegans
Match: rsp-7 (Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159]) HSP 1 Score: 103.605 bits (257), Expect = 9.766e-26 Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 1 Query: 217 FL*VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVV-GRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQP-VAEVKFIRMAGSDNE---NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 L ++I ++ E A HL NTV D A++ LP + IPD + + T G + P V + + G +IT++P+ + GLP YP LP T+ AK+EEIRRTV V NL + +V + F EV + RMA + AYVEF+ Q+SV A G RP+ IQHS VAI+KP Sbjct: 53 LLKTAFIKFDDERCVEVAQHLTNTVVIDCAIVCLPYPNPV---IPD--EESFFNSGGSTTAG----QRQLPPHVTNKIQESDDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKP 245 HSP 2 Score: 32.7278 bits (73), Expect = 9.766e-26 Identity = 11/36 (30.56%), Postives = 24/36 (66.67%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEA 122 I+ ++NI+ + T ++I +F ++G I++ K+Y E Sbjct: 11 ILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEG 46
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Match: Srp54 (gene:FBgn0024285 transcript:FBtr0079875) HSP 1 Score: 115.161 bits (287), Expect = 7.057e-31 Identity = 65/194 (33.51%), Postives = 98/194 (50.52%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 + Y+ Y A HL NTVF DRALIV+P+ IP+ A + V G+ P +VI+ + G+ +Q I T +P ++ LP YP LP + KIEEIRRT++V ++ + + + FQ EVK+ R A DN+ +EF +Q+S++ A M G + + HS +I KP Sbjct: 54 ICYVKYTDTTSVPVAQHLTNTVFIDRALIVIPVL-----AIPEEYRALEMLKNGTIVPGLQKPDSKLPPEVINRIEGQLPQQVIKTYDPKLVEFNLPEYPALPSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRAGEVKYARWAEKDNKTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKP 242 HSP 2 Score: 39.2762 bits (90), Expect = 7.057e-31 Identity = 17/53 (32.08%), Postives = 33/53 (62.26%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYF---EEALQEETKVIFYKY 158 +IQ++NIA T++ ++TLFG IG I E ++Y + + ++++ + KY Sbjct: 7 PRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKY 59
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Match: Caper (gene:FBgn0031883 transcript:FBtr0089640) HSP 1 Score: 53.1434 bits (126), Expect = 4.952e-7 Identity = 29/88 (32.95%), Postives = 44/88 (50.00%), Query Frame = 1 Query: 541 TEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNV 792 TE++ E RTV L A+ + +FF V +V+ +R+ + + AY+EF D SV A G+ G L PIM+QH+ Sbjct: 227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQA 314
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Match: Caper (gene:FBgn0031883 transcript:FBtr0089636) HSP 1 Score: 53.1434 bits (126), Expect = 4.952e-7 Identity = 29/88 (32.95%), Postives = 44/88 (50.00%), Query Frame = 1 Query: 541 TEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNV 792 TE++ E RTV L A+ + +FF V +V+ +R+ + + AY+EF D SV A G+ G L PIM+QH+ Sbjct: 227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQA 314
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]) HSP 1 Score: 117.087 bits (292), Expect = 3.279e-34 Identity = 78/203 (38.42%), Postives = 107/203 (52.71%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTY------PKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNE--NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 V YI Y A HL NTVF DRALIV+P C G+IP+ A + AP V ++ P S + R+ + + + S + + T P L + + +K++EIRRTV V NL+S +T A Q+ FF+ V +VKF+RMAG + + A+VEF DQ SV +A G RP+ I HSN AIVKP Sbjct: 50 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQNRSLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 249 HSP 2 Score: 48.521 bits (114), Expect = 3.279e-34 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +N+IQI+N++A V+ + ++TLFGF+G I E ++Y + L +KV + KY Sbjct: 4 TNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKY 55
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]) HSP 1 Score: 117.087 bits (292), Expect = 3.304e-34 Identity = 78/203 (38.42%), Postives = 107/203 (52.71%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTY------PKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNE--NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 V YI Y A HL NTVF DRALIV+P C G+IP+ A + AP V ++ P S + R+ + + + S + + T P L + + +K++EIRRTV V NL+S +T A Q+ FF+ V +VKF+RMAG + + A+VEF DQ SV +A G RP+ I HSN AIVKP Sbjct: 53 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQNRSLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 252 HSP 2 Score: 48.9062 bits (115), Expect = 3.304e-34 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +N+IQI+N++A V+ + ++TLFGF+G I E ++Y + L +KV + KY Sbjct: 7 TNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKY 58
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]) HSP 1 Score: 45.4394 bits (106), Expect = 7.301e-10 Identity = 19/54 (35.19%), Postives = 37/54 (68.52%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 S +++IQ++N++ + T E ++TLFGFIG+I E +++ + L ++V F K+ Sbjct: 4 SSTSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKF 57 HSP 2 Score: 37.7354 bits (86), Expect = 7.301e-10 Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 1 Query: 274 HLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396 HL NTVF DRALIV+P A+ G IPD + A + AP V Sbjct: 68 HLTNTVFVDRALIVVPFAE---GVIPDESKAMSLLAPANAV 105
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]) HSP 1 Score: 47.7506 bits (112), Expect = 4.807e-9 Identity = 19/54 (35.19%), Postives = 37/54 (68.52%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 S +++IQ++N++ + T E ++TLFGFIG+I E +++ + L ++V F K+ Sbjct: 4 SSTSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKF 57 HSP 2 Score: 33.113 bits (74), Expect = 4.807e-9 Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 274 HLHNTVFHDRALIVLPLAD 330 HL NTVF DRALIV+P A+ Sbjct: 68 HLTNTVFVDRALIVVPFAE 86
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]) HSP 1 Score: 46.9802 bits (110), Expect = 8.748e-9 Identity = 19/54 (35.19%), Postives = 37/54 (68.52%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 S +++IQ++N++ + T E ++TLFGFIG+I E +++ + L ++V F K+ Sbjct: 4 SSTSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKF 57 HSP 2 Score: 33.113 bits (74), Expect = 8.748e-9 Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADC 333 V ++ + + HL NTVF DRALIV+P A+ Sbjct: 52 VCFVKFHEPESVGVSQHLTNTVFVDRALIVVPFAEA 87
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Match: cdkal1 (CDK5 regulatory subunit associated protein 1-like 1 [Source:Xenbase;Acc:XB-GENE-5895778]) HSP 1 Score: 114.775 bits (286), Expect = 6.924e-32 Identity = 86/260 (33.08%), Postives = 128/260 (49.23%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILP------------------------KSKNWPRDVISMVVGRTG-------EQSIITIEPSF--IKQGLPTYPKLPY-----STEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRIVRDSDS 867 V Y+ Y A HL NTVF DRALIV+P C G+IP+ A + AP +++ +LP + + ++S+ + G E I T+ P + +P LP + + K++EIRRT+ V NL+S TT A+Q+ +FF+ V +V+F+RMAG + + A+VEF+DQ+SV +A G RP+ I HSN AIVKP + LEE +R VR++ S Sbjct: 52 VCYVKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEETKALSLLAPAPSLSSLLPGAGLLPIPAPTPTPPIASSLASVLRREKVEVPLLSVPLTSLGVNLPTPLEPVITTLAPVLPALTPAIPAVADLPQPPLMGNVDPTKVDEIRRTIYVGNLNSQTTTAEQLLEFFKQVGDVRFVRMAGDETQPTRFAFVEFSDQNSVTRALTFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 307 HSP 2 Score: 43.5134 bits (101), Expect = 6.924e-32 Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N++A VT + ++TLF F+G I E ++Y + L +KV + KY Sbjct: 8 VIQVTNLSAAVTSDQMRTLFSFLGDIEELRLYPPDNAPLAFSSKVCYVKY 57
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Match: srsf11 (Xenopus tropicalis serine/arginine-rich splicing factor 11 (srsf11), mRNA. [Source:RefSeq mRNA;Acc:NM_001364795]) HSP 1 Score: 45.8246 bits (107), Expect = 4.697e-10 Identity = 18/54 (33.33%), Postives = 36/54 (66.67%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 S +++IQ++N++ + + E +KTLFGF+G I E +++ + L ++V F K+ Sbjct: 3 SSTDVIQVTNVSPSASSEQMKTLFGFLGKIEELRLFPPDDSPLPVTSRVCFVKF 56 HSP 2 Score: 38.891 bits (89), Expect = 4.697e-10 Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAP 384 V ++ ++ A A HL NTVF DRALIV+P A+ G IPD A + AP Sbjct: 51 VCFVKFQDPDSAVVAQHLTNTVFVDRALIVVPYAE---GIIPDEAKALSLVAP 100
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Match: rbm39 (RNA binding motif protein 39 [Source:NCBI gene;Acc:549542]) HSP 1 Score: 50.447 bits (119), Expect = 6.728e-6 Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 1 Query: 571 RTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHS----NVAIVKPSNYMRG 825 RTV L + + + +FF V +V+ +RM N + AYVEF DQSSV A G+ G + PI++Q S N A +N +G Sbjct: 149 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNRAAAMANNLQKG 241
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245]) HSP 1 Score: 125.946 bits (315), Expect = 1.400e-34 Identity = 85/225 (37.78%), Postives = 117/225 (52.00%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQS---------IITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849 V YI + A HL NTVF DRALIV+P C G+IP+ A + AP T+T ++P + P S + + ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R+ Sbjct: 64 VCYIKFRDPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPAPTMTSLVPGAGLLPIPTSSPLTAVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 285 HSP 2 Score: 40.817 bits (94), Expect = 1.400e-34 Identity = 18/50 (36.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N+++ VT E ++TLF F+G I E ++Y + L +KV + K+ Sbjct: 20 VIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNTPLAFSSKVCYIKF 69
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245]) HSP 1 Score: 93.2041 bits (230), Expect = 2.284e-21 Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 Query: 484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRIVRDSDS 867 ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R VR++ S Sbjct: 40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 174
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245]) HSP 1 Score: 93.2041 bits (230), Expect = 2.340e-20 Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 Query: 484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRIVRDSDS 867 ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R VR++ S Sbjct: 40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 174
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245]) HSP 1 Score: 92.8189 bits (229), Expect = 1.853e-19 Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849 ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R+ Sbjct: 40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 169
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srsf11 (serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457]) HSP 1 Score: 44.2838 bits (103), Expect = 7.668e-10 Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N++ + + E ++TLFGF+G I E +++ + L ++V F K+ Sbjct: 27 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 76 HSP 2 Score: 39.2762 bits (90), Expect = 7.668e-10 Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396 V ++ + A A HL NTVF DRALIV+P A+ G IPD A + AP V Sbjct: 71 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDETKALSLLAPANAV 124
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|O01159|RSP7_CAEEL (Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis elegans OX=6239 GN=rsp-7 PE=3 SV=3) HSP 1 Score: 103.605 bits (257), Expect = 1.021e-24 Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 1 Query: 217 FL*VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVV-GRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQP-VAEVKFIRMAGSDNE---NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 L ++I ++ E A HL NTV D A++ LP + IPD + + T G + P V + + G +IT++P+ + GLP YP LP T+ AK+EEIRRTV V NL + +V + F EV + RMA + AYVEF+ Q+SV A G RP+ IQHS VAI+KP Sbjct: 53 LLKTAFIKFDDERCVEVAQHLTNTVVIDCAIVCLPYPNPV---IPD--EESFFNSGGSTTAG----QRQLPPHVTNKIQESDDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKP 245 HSP 2 Score: 32.7278 bits (73), Expect = 1.021e-24 Identity = 11/36 (30.56%), Postives = 24/36 (66.67%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEA 122 I+ ++NI+ + T ++I +F ++G I++ K+Y E Sbjct: 11 ILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEG 46
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q8WXA9|SREK1_HUMAN (Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens OX=9606 GN=SREK1 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.419e-19 Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1 Query: 400 GILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 G+LP P + + + G ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP Sbjct: 9 GLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKP 147
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q9JKL7|SREK1_RAT (Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Srek1 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.144e-18 Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849 ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R+ Sbjct: 40 LDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 169
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q8BZX4|SREK1_MOUSE (Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus OX=10090 GN=Srek1 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.297e-18 Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849 ++P+ G P L + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + + A+VEF DQ+SV +A G RP+ I HSN AIVKP + LEE +R+ Sbjct: 40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 169
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q05519|SRS11_HUMAN (Serine/arginine-rich splicing factor 11 OS=Homo sapiens OX=9606 GN=SRSF11 PE=1 SV=1) HSP 1 Score: 43.1282 bits (100), Expect = 9.777e-9 Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQ++N++ + + E ++TLFGF+G I E +++ + L ++V F K+ Sbjct: 34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83 HSP 2 Score: 39.2762 bits (90), Expect = 9.777e-9 Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396 V ++ + A A HL NTVF DRALIV+P A+ G IPD A + AP V Sbjct: 78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A3P6ZHG2 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7372 PE=4 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.522e-73 Identity = 122/207 (58.94%), Postives = 150/207 (72.46%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846 V +I + +AE ALHLHNT+F DRALI+LP+ GG IPD YA +VRAP T GI P+S WP DVISMVVGR GEQ I TI+P G P YP LP +T+ +IEEIRRTVLVTNLD +QV +FF AEVK +RMAGSD+E AAYVEFT+Q+SVVKAFG+MGT L R IM+QHSN AI+KP++ + GLE++ ++ Sbjct: 62 VCFIKFADAINAEVALHLHNTMFLDRALIILPVVTE-GGTIPDEKYAELVRAPLHTSAGIHPRSALWPLDVISMVVGRPGEQVIQTIDPQLSSMGFPAYPPLPAATDCNRIEEIRRTVLVTNLDPKLTCEQVLEFFNNHAEVKCVRMAGSDDERAAYVEFTEQASVVKAFGLMGTKLGDRQIMVQHSNCAIIKPNSSLAGLEDTIKK 267
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0R3SQL8 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 PE=4 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.571e-73 Identity = 122/207 (58.94%), Postives = 150/207 (72.46%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846 V +I + +AE ALHLHNT+F DRALI+LP+ GG IPD YA +VRAP T GI P+S WP DVISMVVGR GEQ I TI+P G P YP LP +T+ +IEEIRRTVLVTNLD +QV +FF AEVK +RMAGSD+E AAYVEFT+Q+SVVKAFG+MGT L R IM+QHSN AI+KP++ + GLE++ ++ Sbjct: 62 VCFIKFADAINAEVALHLHNTMFLDRALIILPVVTE-GGTIPDEKYAELVRAPLHTSAGIHPRSALWPLDVISMVVGRPGEQVIQTIDPQLSSMGFPAYPPLPAATDCNRIEEIRRTVLVTNLDPKLTCEQVLEFFNNHAEVKCVRMAGSDDERAAYVEFTEQASVVKAFGLMGTKLGDRQIMVQHSNCAIIKPNSSLAGLEDTIKK 267
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0X3Q2Y5 (Putative splicing factor, arginine/serine-rich 7 (Fragment) OS=Schistocephalus solidus OX=70667 GN=RSP7 PE=4 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.885e-71 Identity = 117/207 (56.52%), Postives = 152/207 (73.43%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846 V ++ Y +AE +LHL+NT+F DRALIVLPL D IPD NY+N+VRAP T G+LP+S NWP DVISMVVGR GEQ+I TIEP G P+YP LP +T+V +IEEIRRTV ++NL T ++V +FF AEVK +RMAG+D + AAYVEFT+Q SVVKAFG+MG + R IM+QHSN AI+KP++ + GLE++ ++ Sbjct: 51 VCFVKYADVVNAEVSLHLNNTIFLDRALIVLPLVDG-RDTIPDENYSNLVRAPPHTAAGVLPRSANWPLDVISMVVGRPGEQAIHTIEPRLATMGFPSYPPLPAATDVNRIEEIRRTVFISNLSPKTTGEEVLEFFNAHAEVKCVRMAGTDEDRAAYVEFTEQPSVVKAFGLMGATIGDRQIMVQHSNCAIIKPASALLGLEDTAKK 256
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0R3TNQ8 (RRM domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9033 PE=4 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 9.717e-71 Identity = 119/207 (57.49%), Postives = 147/207 (71.01%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846 V +I + +AE ALHLHNT+F DRALI+LP+ IPD YA +VRAP T GI P+S WP DVISMVVGR GEQ I TI+P G P YP LP +T+ +IEEIRRTVLVTNLD +QV +FF AEVK +RMAGSD E AAYVEFT+QSS+VKAFG+MG+ L R IM+QHSN AI+KP++ + GLE++ ++ Sbjct: 51 VCFIKFADAINAEVALHLHNTMFLDRALIILPVVTE-NATIPDEKYAELVRAPLHTSAGIHPRSTLWPLDVISMVVGRPGEQVIQTIDPRLSSMGFPAYPPLPAATDCNRIEEIRRTVLVTNLDPKLTGEQVLEFFNNHAEVKCVRMAGSDEERAAYVEFTEQSSIVKAFGLMGSTLGDRQIMVQHSNCAIIKPNSSLAGLEDNIKK 256
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0R3U415 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1363 PE=4 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 8.595e-70 Identity = 121/207 (58.45%), Postives = 149/207 (71.98%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846 V YI Y +AE ALHLHNT+F DRALIVLP+ D IPD YAN+VRAP T GI P+S +WP DV+SMVVGR GEQ I TI+P G P YP LP +T+ +IEEIRRTVLVTNLD T +QV ++F AEVK +RMAG++ E AAYVEFT+Q SVVKAFG+MG + R IMIQHSN AI+KP++ + GL+++ +R Sbjct: 26 VCYIRYADAINAEVALHLHNTMFLDRALIVLPVVDG-KNAIPDEKYANLVRAPLHTSAGIHPRSASWPLDVVSMVVGRPGEQVIQTIDPRLASLGFPVYPPLPAATDCNRIEEIRRTVLVTNLDPKTTGEQVLEYFNAHAEVKCVRMAGTNGERAAYVEFTEQPSVVKAFGLMGGTIGDRQIMIQHSNCAIIKPTSALPGLDDTVKR 231
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: srek1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:NCBI gene;Acc:107197895]) HSP 1 Score: 119.398 bits (298), Expect = 3.930e-34 Identity = 82/215 (38.14%), Postives = 110/215 (51.16%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWP--------RDVISMVVG---------RTG-EQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 V YI Y A HL NTVF DRALIV+P C G+IP+ A + AP V ++P P D IS +G G E S+ + +P + + + +K++EIRRTV V NL+S TT A+Q+ +FF+ V EVKF+RMAG + + A+VEF +Q SV +A G RP+ I HSN AIVKP Sbjct: 53 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPAAPVASLMPGGGLLPIPTPAPLQNDTISFQLGLPLPARGPLAAGLESSVAAL------SAVPAQVPIMGNVDPSKVDEIRRTVYVGNLNSQTTTAEQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFANQESVSRALAFNGVMFGDRPLKINHSNNAIVKP 258 HSP 2 Score: 45.8246 bits (107), Expect = 3.930e-34 Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQI+N++A+V + ++TLFGF+G I E ++Y + L +KV + KY Sbjct: 9 VIQITNLSASVNSDQMRTLFGFLGDIEELRLYPPDNTPLSFSSKVCYIKY 58
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: srek1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:NCBI gene;Acc:107197895]) HSP 1 Score: 119.398 bits (298), Expect = 3.965e-34 Identity = 82/215 (38.14%), Postives = 110/215 (51.16%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWP--------RDVISMVVG---------RTG-EQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 V YI Y A HL NTVF DRALIV+P C G+IP+ A + AP V ++P P D IS +G G E S+ + +P + + + +K++EIRRTV V NL+S TT A+Q+ +FF+ V EVKF+RMAG + + A+VEF +Q SV +A G RP+ I HSN AIVKP Sbjct: 53 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPAAPVASLMPGGGLLPIPTPAPLQNDTISFQLGLPLPARGPLAAGLESSVAAL------SAVPAQVPIMGNVDPSKVDEIRRTVYVGNLNSQTTTAEQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFANQESVSRALAFNGVMFGDRPLKINHSNNAIVKP 258 HSP 2 Score: 45.8246 bits (107), Expect = 3.965e-34 Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +IQI+N++A+V + ++TLFGF+G I E ++Y + L +KV + KY Sbjct: 9 VIQITNLSASVNSDQMRTLFGFLGDIEELRLYPPDNTPLSFSSKVCYIKY 58
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: srsf11 (serine/arginine-rich splicing factor 11 [Source:NCBI gene;Acc:103035453]) HSP 1 Score: 48.1358 bits (113), Expect = 9.325e-11 Identity = 19/55 (34.55%), Postives = 37/55 (67.27%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKYV 161 S +N++Q++N++ + T E ++TLFGF+G I E K++ + L ++V F K++ Sbjct: 3 SSTNVVQVTNVSPSATSEQMRTLFGFLGNIEELKLFPPDDSPLPVTSRVCFVKFL 57 HSP 2 Score: 38.1206 bits (87), Expect = 9.325e-11 Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 1 Query: 274 HLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVT 399 HL NTVF DRALIV+P A+ G IPD + A + AP V Sbjct: 67 HLTNTVFVDRALIVVPFAE---GVIPDESKALSLLAPANAVA 105
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: ENSAMXT00000008946.2 (serine/arginine-rich splicing factor 11-like [Source:NCBI gene;Acc:103022692]) HSP 1 Score: 43.5134 bits (101), Expect = 9.150e-10 Identity = 13/34 (38.24%), Postives = 27/34 (79.41%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIY 110 +N++Q++N++ + T E ++TLFGF+G I E +++ Sbjct: 5 TNVVQVTNVSPSTTSEQMRTLFGFLGTIEELRLF 38 HSP 2 Score: 39.6614 bits (91), Expect = 9.150e-10 Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAP 384 V ++ ++ A HL NTVF DRALIV+P A+ G IPD + A + AP Sbjct: 51 VCFVRFQEQESVGVAQHLTNTVFVDRALIVVPYAE---GVIPDESKALSLLAP 100
BLAST of Splicing factor arginine:serine rich vs. Ensembl Sea Lamprey
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]) HSP 1 Score: 47.3654 bits (111), Expect = 5.668e-14 Identity = 18/54 (33.33%), Postives = 36/54 (66.67%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 +M+++IQ++N+A T E +KTLFGF+G I + +++ + L ++V F ++ Sbjct: 37 TMTDVIQVTNVAPAATTEQMKTLFGFLGKIEDIRVFPHDDSPLPVTSRVCFVRF 90 HSP 2 Score: 47.3654 bits (111), Expect = 5.668e-14 Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILP 411 V ++ + + + HL NTVF DRALIV+P A+ G+IPD A + AP V G+LP Sbjct: 85 VCFVRFSDSVSVGVSQHLTNTVFIDRALIVVPYAE---GKIPDEAKALSLLAPASAVAGLLP 143
BLAST of Splicing factor arginine:serine rich vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923]) HSP 1 Score: 48.1358 bits (113), Expect = 4.519e-6 Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 1 Query: 532 PYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHS 786 P ++ + E RTV L + A+ + +FF V +V+ +R+ N + AY+EF D SV A G+ G L PI++Q S Sbjct: 161 PSTSTLTPEERDSRTVFCMQLAARIRAKDLEEFFSAVGKVRDVRLISDRNSRRSKGIAYIEFVDLDSVPLAIGLTGQRLLGVPIIVQAS 249
BLAST of Splicing factor arginine:serine rich vs. Ensembl Nematostella
Match: EDO43975 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RX62]) HSP 1 Score: 82.4185 bits (202), Expect = 8.700e-23 Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = 1 Query: 268 ALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPT------------YPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNE--NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807 ALHL NTVF D++LIV+P++D V +K + + S ++ +G G+ I P+ I Q + + P + + K+EEIRRTV V NLD A+ + FF ++K+IRM G D + AY+EF + ++V A G +PI + HS A+ KP Sbjct: 69 ALHLTNTVFIDKSLIVVPVSD------------EPVSEEEKALQLVAASS--------ALALG-MGDGGGILPTPALIPQLMSSSGNTIAVPSSVPPPPPLTNVDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSALQYSGAIFGGKPIKVTHSKNAVSKP 241 HSP 2 Score: 43.1282 bits (100), Expect = 8.700e-23 Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFE-EALQEETKVIFYKYV 161 + +IQ+SN+A T E +K LF FIG + + K++ E A+ ++KV F K+V Sbjct: 10 TKLIQVSNVAHNATLEQLKVLFSFIGEVEDLKLFPESPAITVQSKVCFVKFV 61
BLAST of Splicing factor arginine:serine rich vs. Ensembl Nematostella
Match: EDO33926 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW0]) HSP 1 Score: 49.2914 bits (116), Expect = 2.941e-6 Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1 Query: 523 PKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMI 777 P P + E A+ E+ +RTV L + + +FF V +V +R+ N + AY+EFTD+S+V A G+ G L PIM+ Sbjct: 104 PPEPMTEESAE-EKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLSGQKLLGAPIMV 191
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Match: srsf11 (serine/arginine-rich splicing factor 11 [Source:NCBI gene;Acc:101163805]) HSP 1 Score: 45.4394 bits (106), Expect = 7.006e-12 Identity = 18/55 (32.73%), Postives = 37/55 (67.27%), Query Frame = 3 Query: 3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKYV 161 S +++IQ++N++ + T E ++TLFG++G I E K++ + L ++V F K++ Sbjct: 3 STTHVIQVTNVSPSTTSEQMRTLFGYLGTIEELKLFPPDDSPLPVTSRVCFVKFL 57 HSP 2 Score: 44.669 bits (104), Expect = 7.006e-12 Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 Query: 274 HLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILP 411 HL NTVF DRALIV+P A+ G IPD + A + AP V G++P Sbjct: 67 HLTNTVFVDRALIVVPFAE---GVIPDESKAMSLLAPANAVAGMMP 109
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Match: ENSORLT00000034590.1 (pep primary_assembly:ASM223467v1:17:27011354:27013388:-1 gene:ENSORLG00000030366.1 transcript:ENSORLT00000034590.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 44.2838 bits (103), Expect = 5.664e-9 Identity = 16/52 (30.77%), Postives = 34/52 (65.38%), Query Frame = 3 Query: 9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 + ++Q++N++ + T E ++TLFGF+G I E K++ + + ++V F K+ Sbjct: 5 TKVVQVTNVSPSTTSEQMRTLFGFLGTIEELKLFPPDDSPMPVTSRVCFVKF 56 HSP 2 Score: 36.1946 bits (82), Expect = 5.664e-9 Identity = 16/40 (40.00%), Postives = 24/40 (60.00%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQ 345 V ++ ++ + HL NTVF DRALIV+P A+ G+ Sbjct: 51 VCFVKFQEPESVGVSQHLTNTVFVDRALIVVPFAEVKKGK 90
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Match: ENSORLT00000003382.2 (pep primary_assembly:ASM223467v1:12:4422085:4431270:-1 gene:ENSORLG00000002711.2 transcript:ENSORLT00000003382.2 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 40.0466 bits (92), Expect = 3.947e-8 Identity = 17/47 (36.17%), Postives = 31/47 (65.96%), Query Frame = 3 Query: 24 ISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158 ++N+++ V+ E ++TLFGF+G I E ++Y + L +KV + KY Sbjct: 9 VTNLSSAVSSEQMRTLFGFLGDIEELRLYPPDNTTLNFSSKVCYIKY 55 HSP 2 Score: 37.7354 bits (86), Expect = 3.947e-8 Identity = 19/35 (54.29%), Postives = 21/35 (60.00%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLAD 330 V YI Y A HL NTVF DRALIV+P A+ Sbjct: 50 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVPCAE 84
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1) HSP 1 Score: 468.003 bits (1203), Expect = 2.709e-160 Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 876 VSYIVYESN DAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG Sbjct: 46 VSYIVYESNSDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 262 HSP 2 Score: 109.768 bits (273), Expect = 2.864e-25 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 Query: 1213 TDGKRKPHENKSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSPDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVXXXXXXKTDV 1632 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKI+KSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV Sbjct: 375 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKIKKSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV 514 HSP 3 Score: 95.1301 bits (235), Expect = 2.070e-20 Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 6 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVIFYKY 158 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKV + Y Sbjct: 1 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVSYIVY 51
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1) HSP 1 Score: 459.529 bits (1181), Expect = 8.123e-157 Identity = 216/227 (95.15%), Postives = 216/227 (95.15%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQ----------QVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 876 VSYIVYESN DAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQ QVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG Sbjct: 46 VSYIVYESNSDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQTDSSLCMTLQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 272 HSP 2 Score: 110.153 bits (274), Expect = 3.003e-25 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 Query: 1213 TDGKRKPHENKSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSPDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVXXXXXXKTDV 1632 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKI+KSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV Sbjct: 385 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKIKKSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV 524 HSP 3 Score: 95.1301 bits (235), Expect = 1.927e-20 Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 6 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVIFYKY 158 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKV + Y Sbjct: 1 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVSYIVY 51
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1) HSP 1 Score: 274.633 bits (701), Expect = 5.882e-95 Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 1 Query: 226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQ 618 VSYIVYESN DAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQ Sbjct: 46 VSYIVYESNSDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQ 176 HSP 2 Score: 93.5893 bits (231), Expect = 5.882e-95 Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 Query: 6 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVIFYKY 158 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKV + Y Sbjct: 1 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVSYIVY 51
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1) HSP 1 Score: 158.303 bits (399), Expect = 1.482e-43 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 Query: 664 MAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 876 MAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG Sbjct: 1 MAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 71 HSP 2 Score: 111.309 bits (277), Expect = 1.044e-26 Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 Query: 1213 TDGKRKPHENKSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSPDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVXXXXXXKTDV 1632 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKI+KSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV Sbjct: 184 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKIKKSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV 323 The following BLAST results are available for this feature:
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Splicing factor arginine:serine rich vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 4
BLAST of Splicing factor arginine:serine rich vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of Splicing factor arginine:serine rich vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Splicing factor arginine:serine rich vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30010103 ID=SMED30010103|Name=Splicing factor arginine:serine rich|organism=Schmidtea mediterranea sexual|type=transcript|length=1724bpback to top protein sequence of SMED30010103-orf-1 >SMED30010103-orf-1 ID=SMED30010103-orf-1|Name=SMED30010103-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=397bp MVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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