Splicing factor arginine:serine rich

Overview
NameSplicing factor arginine:serine rich
Smed IDSMED30010103
Length (bp)1724
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Splicing factor arginine:serine rich (SMED30010103) t-SNE clustered cells

Violin plots show distribution of expression levels for Splicing factor arginine:serine rich (SMED30010103) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Splicing factor arginine:serine rich (SMED30010103) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Splicing factor arginine:serine rich (SMED30010103) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010103

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30010103SMESG000041611.1 SmedASXL_012299SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30010103SMESG000041611.1 SmedASXL_012299SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
protonephridiaSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30010103SMESG000041611.1 dd_Smed_v4_1935_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010103SMESG000041611.1 Contig4285uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010103SMESG000041611.1 Contig4285newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010103SMESG000047759.1 SMESG000004769.1 SMESG000073442.1 Contig4285uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010103SMESG000047759.1 SMESG000004769.1 SMESG000073442.1 Contig4285newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
neural progenitor cellSMED30010103SMESG000041611.1 dd_Smed_v6_1935_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle progenitor cellSMED30010103SMESG000041611.1 dd_Smed_v6_1935_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SREK1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:17882])

HSP 1 Score: 131.724 bits (330), Expect = 2.489e-36
Identity = 89/228 (39.04%), Postives = 123/228 (53.95%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVT------GILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYM-----RGLEESNRRIVRDSDS 867
            V Y+ +        A HL NTVF DRALIV+P   C  G+IP+ + A  + AP  T+T      G+LP     P   + + +   G      ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R VR++ S
Sbjct:   64 VCYVKFRDPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEESKALSLLAPAPTMTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 287

HSP 2 Score: 41.5874 bits (96), Expect = 2.489e-36
Identity = 18/52 (34.62%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +++IQ++N+++ VT E ++TLF F+G I E ++Y  +   L   +KV + K+
Sbjct:   18 TSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKF 69
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SREK1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:17882])

HSP 1 Score: 95.1301 bits (235), Expect = 5.038e-20
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:  400 GILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            G+LP     P   + + +   G      ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP
Sbjct:    9 GLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKP 147
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SRSF11 (serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782])

HSP 1 Score: 44.2838 bits (103), Expect = 1.017e-9
Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N++ + + E ++TLFGF+G I E +++  +   L   ++V F K+
Sbjct:   34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83

HSP 2 Score: 39.2762 bits (90), Expect = 1.017e-9
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396
            V ++ +     A  A HL NTVF DRALIV+P A+   G IPD   A  + AP   V
Sbjct:   78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SRSF11 (serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782])

HSP 1 Score: 43.5134 bits (101), Expect = 2.129e-9
Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N++ + + E ++TLFGF+G I E +++  +   L   ++V F K+
Sbjct:   34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83

HSP 2 Score: 39.2762 bits (90), Expect = 2.129e-9
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396
            V ++ +     A  A HL NTVF DRALIV+P A+   G IPD   A  + AP   V
Sbjct:   78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Match: SRSF11 (serine and arginine rich splicing factor 11 [Source:HGNC Symbol;Acc:HGNC:10782])

HSP 1 Score: 43.1282 bits (100), Expect = 2.217e-9
Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N++ + + E ++TLFGF+G I E +++  +   L   ++V F K+
Sbjct:   34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83

HSP 2 Score: 39.2762 bits (90), Expect = 2.217e-9
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396
            V ++ +     A  A HL NTVF DRALIV+P A+   G IPD   A  + AP   V
Sbjct:   78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Celegans
Match: rsp-7 (Probable splicing factor, arginine/serine-rich 7 [Source:UniProtKB/Swiss-Prot;Acc:O01159])

HSP 1 Score: 103.605 bits (257), Expect = 9.766e-26
Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 1 
Query:  217 FL*VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVV-GRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQP-VAEVKFIRMAGSDNE---NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
             L  ++I ++     E A HL NTV  D A++ LP  +     IPD    +   +   T  G     +  P  V + +     G   +IT++P+  + GLP YP LP  T+ AK+EEIRRTV V NL    +  +V + F     EV + RMA   +      AYVEF+ Q+SV  A    G     RP+ IQHS VAI+KP
Sbjct:   53 LLKTAFIKFDDERCVEVAQHLTNTVVIDCAIVCLPYPNPV---IPD--EESFFNSGGSTTAG----QRQLPPHVTNKIQESDDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKP 245

HSP 2 Score: 32.7278 bits (73), Expect = 9.766e-26
Identity = 11/36 (30.56%), Postives = 24/36 (66.67%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEA 122
            I+ ++NI+ + T ++I  +F ++G I++ K+Y  E 
Sbjct:   11 ILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEG 46
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Match: Srp54 (gene:FBgn0024285 transcript:FBtr0079875)

HSP 1 Score: 115.161 bits (287), Expect = 7.057e-31
Identity = 65/194 (33.51%), Postives = 98/194 (50.52%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            + Y+ Y        A HL NTVF DRALIV+P+       IP+   A  +      V G+       P +VI+ + G+  +Q I T +P  ++  LP YP LP   +  KIEEIRRT++V ++ +      + + FQ   EVK+ R A  DN+    +EF +Q+S++ A  M G       + + HS  +I KP
Sbjct:   54 ICYVKYTDTTSVPVAQHLTNTVFIDRALIVIPVL-----AIPEEYRALEMLKNGTIVPGLQKPDSKLPPEVINRIEGQLPQQVIKTYDPKLVEFNLPEYPALPSFYDARKIEEIRRTIIVCDVKNEWRLDDLMECFQRAGEVKYARWAEKDNKTYCMIEFCEQTSIIHALRMQGQEFKGGHLSVYHSTYSITKP 242

HSP 2 Score: 39.2762 bits (90), Expect = 7.057e-31
Identity = 17/53 (32.08%), Postives = 33/53 (62.26%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYF---EEALQEETKVIFYKY 158
              +IQ++NIA   T++ ++TLFG IG I E ++Y    + +   ++++ + KY
Sbjct:    7 PRVIQVTNIAPQATKDQMQTLFGNIGKIEEIRLYPTIRDVSCPVQSRICYVKY 59
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Match: Caper (gene:FBgn0031883 transcript:FBtr0089640)

HSP 1 Score: 53.1434 bits (126), Expect = 4.952e-7
Identity = 29/88 (32.95%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  541 TEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNV 792
            TE++  E   RTV    L     A+ + +FF  V +V+ +R+   +     +  AY+EF D  SV  A G+ G  L   PIM+QH+  
Sbjct:  227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQA 314
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Match: Caper (gene:FBgn0031883 transcript:FBtr0089636)

HSP 1 Score: 53.1434 bits (126), Expect = 4.952e-7
Identity = 29/88 (32.95%), Postives = 44/88 (50.00%), Query Frame = 1 
Query:  541 TEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNV 792
            TE++  E   RTV    L     A+ + +FF  V +V+ +R+   +     +  AY+EF D  SV  A G+ G  L   PIM+QH+  
Sbjct:  227 TELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQA 314
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132])

HSP 1 Score: 117.087 bits (292), Expect = 3.279e-34
Identity = 78/203 (38.42%), Postives = 107/203 (52.71%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTY------PKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNE--NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            V YI Y        A HL NTVF DRALIV+P   C  G+IP+   A  + AP   V  ++      P    S +  R+   + + +  S +   + T       P L  + + +K++EIRRTV V NL+S +T A Q+  FF+ V +VKF+RMAG + +    A+VEF DQ SV +A    G     RP+ I HSN AIVKP
Sbjct:   50 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQNRSLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 249

HSP 2 Score: 48.521 bits (114), Expect = 3.279e-34
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +N+IQI+N++A V+ + ++TLFGF+G I E ++Y  +   L   +KV + KY
Sbjct:    4 TNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKY 55
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132])

HSP 1 Score: 117.087 bits (292), Expect = 3.304e-34
Identity = 78/203 (38.42%), Postives = 107/203 (52.71%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTY------PKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNE--NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            V YI Y        A HL NTVF DRALIV+P   C  G+IP+   A  + AP   V  ++      P    S +  R+   + + +  S +   + T       P L  + + +K++EIRRTV V NL+S +T A Q+  FF+ V +VKF+RMAG + +    A+VEF DQ SV +A    G     RP+ I HSN AIVKP
Sbjct:   53 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPATPVASLMSGGGLLPIPSPSTLQNRSLPLANLGVLKSSLDTSVATLSAVSAQPPLMGNVDPSKVDEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 252

HSP 2 Score: 48.9062 bits (115), Expect = 3.304e-34
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +N+IQI+N++A V+ + ++TLFGF+G I E ++Y  +   L   +KV + KY
Sbjct:    7 TNVIQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKY 58
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605])

HSP 1 Score: 45.4394 bits (106), Expect = 7.301e-10
Identity = 19/54 (35.19%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            S +++IQ++N++ + T E ++TLFGFIG+I E +++  +   L   ++V F K+
Sbjct:    4 SSTSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKF 57

HSP 2 Score: 37.7354 bits (86), Expect = 7.301e-10
Identity = 22/41 (53.66%), Postives = 26/41 (63.41%), Query Frame = 1 
Query:  274 HLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396
            HL NTVF DRALIV+P A+   G IPD + A  + AP   V
Sbjct:   68 HLTNTVFVDRALIVVPFAE---GVIPDESKAMSLLAPANAV 105
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605])

HSP 1 Score: 47.7506 bits (112), Expect = 4.807e-9
Identity = 19/54 (35.19%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            S +++IQ++N++ + T E ++TLFGFIG+I E +++  +   L   ++V F K+
Sbjct:    4 SSTSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKF 57

HSP 2 Score: 33.113 bits (74), Expect = 4.807e-9
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1 
Query:  274 HLHNTVFHDRALIVLPLAD 330
            HL NTVF DRALIV+P A+
Sbjct:   68 HLTNTVFVDRALIVVPFAE 86
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605])

HSP 1 Score: 46.9802 bits (110), Expect = 8.748e-9
Identity = 19/54 (35.19%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            S +++IQ++N++ + T E ++TLFGFIG+I E +++  +   L   ++V F K+
Sbjct:    4 SSTSVIQVTNVSPSSTAEQMRTLFGFIGSIDELRLFPPDDSPLPVTSRVCFVKF 57

HSP 2 Score: 33.113 bits (74), Expect = 8.748e-9
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADC 333
            V ++ +        + HL NTVF DRALIV+P A+ 
Sbjct:   52 VCFVKFHEPESVGVSQHLTNTVFVDRALIVVPFAEA 87
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Match: cdkal1 (CDK5 regulatory subunit associated protein 1-like 1 [Source:Xenbase;Acc:XB-GENE-5895778])

HSP 1 Score: 114.775 bits (286), Expect = 6.924e-32
Identity = 86/260 (33.08%), Postives = 128/260 (49.23%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILP------------------------KSKNWPRDVISMVVGRTG-------EQSIITIEPSF--IKQGLPTYPKLPY-----STEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRIVRDSDS 867
            V Y+ Y        A HL NTVF DRALIV+P   C  G+IP+   A  + AP  +++ +LP                        + +     ++S+ +   G       E  I T+ P    +   +P    LP      + +  K++EIRRT+ V NL+S TT A+Q+ +FF+ V +V+F+RMAG + +    A+VEF+DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R VR++ S
Sbjct:   52 VCYVKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEETKALSLLAPAPSLSSLLPGAGLLPIPAPTPTPPIASSLASVLRREKVEVPLLSVPLTSLGVNLPTPLEPVITTLAPVLPALTPAIPAVADLPQPPLMGNVDPTKVDEIRRTIYVGNLNSQTTTAEQLLEFFKQVGDVRFVRMAGDETQPTRFAFVEFSDQNSVTRALTFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 307

HSP 2 Score: 43.5134 bits (101), Expect = 6.924e-32
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N++A VT + ++TLF F+G I E ++Y  +   L   +KV + KY
Sbjct:    8 VIQVTNLSAAVTSDQMRTLFSFLGDIEELRLYPPDNAPLAFSSKVCYVKY 57
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Match: srsf11 (Xenopus tropicalis serine/arginine-rich splicing factor 11 (srsf11), mRNA. [Source:RefSeq mRNA;Acc:NM_001364795])

HSP 1 Score: 45.8246 bits (107), Expect = 4.697e-10
Identity = 18/54 (33.33%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            S +++IQ++N++ + + E +KTLFGF+G I E +++  +   L   ++V F K+
Sbjct:    3 SSTDVIQVTNVSPSASSEQMKTLFGFLGKIEELRLFPPDDSPLPVTSRVCFVKF 56

HSP 2 Score: 38.891 bits (89), Expect = 4.697e-10
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAP 384
            V ++ ++    A  A HL NTVF DRALIV+P A+   G IPD   A  + AP
Sbjct:   51 VCFVKFQDPDSAVVAQHLTNTVFVDRALIVVPYAE---GIIPDEAKALSLVAP 100
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Match: rbm39 (RNA binding motif protein 39 [Source:NCBI gene;Acc:549542])

HSP 1 Score: 50.447 bits (119), Expect = 6.728e-6
Identity = 32/93 (34.41%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:  571 RTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHS----NVAIVKPSNYMRG 825
            RTV    L +    + + +FF  V +V+ +RM    N    +  AYVEF DQSSV  A G+ G  +   PI++Q S    N A    +N  +G
Sbjct:  149 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDQSSVPLAIGLTGQKVLGVPIIVQASQAEKNRAAAMANNLQKG 241
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245])

HSP 1 Score: 125.946 bits (315), Expect = 1.400e-34
Identity = 85/225 (37.78%), Postives = 117/225 (52.00%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQS---------IITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849
            V YI +        A HL NTVF DRALIV+P   C  G+IP+   A  + AP  T+T ++P +   P    S +   +                ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R+
Sbjct:   64 VCYIKFRDPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPAPTMTSLVPGAGLLPIPTSSPLTAVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 285

HSP 2 Score: 40.817 bits (94), Expect = 1.400e-34
Identity = 18/50 (36.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N+++ VT E ++TLF F+G I E ++Y  +   L   +KV + K+
Sbjct:   20 VIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNTPLAFSSKVCYIKF 69
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245])

HSP 1 Score: 93.2041 bits (230), Expect = 2.284e-21
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:  484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRIVRDSDS 867
            ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R VR++ S
Sbjct:   40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 174
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245])

HSP 1 Score: 93.2041 bits (230), Expect = 2.340e-20
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:  484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRIVRDSDS 867
            ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R VR++ S
Sbjct:   40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKR-VREAQS 174
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srek1 (splicing regulatory glutamine/lysine-rich protein 1 [Source:MGI Symbol;Acc:MGI:2145245])

HSP 1 Score: 92.8189 bits (229), Expect = 1.853e-19
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1 
Query:  484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849
            ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R+
Sbjct:   40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 169
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Match: Srsf11 (serine/arginine-rich splicing factor 11 [Source:MGI Symbol;Acc:MGI:1916457])

HSP 1 Score: 44.2838 bits (103), Expect = 7.668e-10
Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N++ + + E ++TLFGF+G I E +++  +   L   ++V F K+
Sbjct:   27 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 76

HSP 2 Score: 39.2762 bits (90), Expect = 7.668e-10
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396
            V ++ +     A  A HL NTVF DRALIV+P A+   G IPD   A  + AP   V
Sbjct:   71 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDETKALSLLAPANAV 124
[Close]
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|O01159|RSP7_CAEEL (Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis elegans OX=6239 GN=rsp-7 PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.021e-24
Identity = 72/202 (35.64%), Postives = 100/202 (49.50%), Query Frame = 1 
Query:  217 FL*VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVV-GRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQP-VAEVKFIRMAGSDNE---NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
             L  ++I ++     E A HL NTV  D A++ LP  +     IPD    +   +   T  G     +  P  V + +     G   +IT++P+  + GLP YP LP  T+ AK+EEIRRTV V NL    +  +V + F     EV + RMA   +      AYVEF+ Q+SV  A    G     RP+ IQHS VAI+KP
Sbjct:   53 LLKTAFIKFDDERCVEVAQHLTNTVVIDCAIVCLPYPNPV---IPD--EESFFNSGGSTTAG----QRQLPPHVTNKIQESDDGSALLITVDPTLEQLGLPAYPPLPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKP 245

HSP 2 Score: 32.7278 bits (73), Expect = 1.021e-24
Identity = 11/36 (30.56%), Postives = 24/36 (66.67%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEA 122
            I+ ++NI+ + T ++I  +F ++G I++ K+Y  E 
Sbjct:   11 ILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEG 46
[Close]
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q8WXA9|SREK1_HUMAN (Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens OX=9606 GN=SREK1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.419e-19
Identity = 57/139 (41.01%), Postives = 79/139 (56.83%), Query Frame = 1 
Query:  400 GILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            G+LP     P   + + +   G      ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP
Sbjct:    9 GLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKP 147
[Close]
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q9JKL7|SREK1_RAT (Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Srek1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.144e-18
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1 
Query:  484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849
            ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R+
Sbjct:   40 LDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 169
[Close]
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q8BZX4|SREK1_MOUSE (Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus OX=10090 GN=Srek1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.297e-18
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 1 
Query:  484 IEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNY-----MRGLEESNRRI 849
            ++P+    G    P L  + + +KI+EIRRTV V NL+S TT A Q+ +FF+ V EVKF+RMAG + +    A+VEF DQ+SV +A    G     RP+ I HSN AIVKP         + LEE  +R+
Sbjct:   40 LDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRV 169
[Close]
BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Match: sp|Q05519|SRS11_HUMAN (Serine/arginine-rich splicing factor 11 OS=Homo sapiens OX=9606 GN=SRSF11 PE=1 SV=1)

HSP 1 Score: 43.1282 bits (100), Expect = 9.777e-9
Identity = 16/50 (32.00%), Postives = 33/50 (66.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQ++N++ + + E ++TLFGF+G I E +++  +   L   ++V F K+
Sbjct:   34 VIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKF 83

HSP 2 Score: 39.2762 bits (90), Expect = 9.777e-9
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTV 396
            V ++ +     A  A HL NTVF DRALIV+P A+   G IPD   A  + AP   V
Sbjct:   78 VCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAE---GVIPDEAKALSLLAPANAV 131
[Close]
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A3P6ZHG2 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS7372 PE=4 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.522e-73
Identity = 122/207 (58.94%), Postives = 150/207 (72.46%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846
            V +I +    +AE ALHLHNT+F DRALI+LP+    GG IPD  YA +VRAP  T  GI P+S  WP DVISMVVGR GEQ I TI+P     G P YP LP +T+  +IEEIRRTVLVTNLD     +QV +FF   AEVK +RMAGSD+E AAYVEFT+Q+SVVKAFG+MGT L  R IM+QHSN AI+KP++ + GLE++ ++
Sbjct:   62 VCFIKFADAINAEVALHLHNTMFLDRALIILPVVTE-GGTIPDEKYAELVRAPLHTSAGIHPRSALWPLDVISMVVGRPGEQVIQTIDPQLSSMGFPAYPPLPAATDCNRIEEIRRTVLVTNLDPKLTCEQVLEFFNNHAEVKCVRMAGSDDERAAYVEFTEQASVVKAFGLMGTKLGDRQIMVQHSNCAIIKPNSSLAGLEDTIKK 267
[Close]
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0R3SQL8 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 PE=4 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.571e-73
Identity = 122/207 (58.94%), Postives = 150/207 (72.46%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846
            V +I +    +AE ALHLHNT+F DRALI+LP+    GG IPD  YA +VRAP  T  GI P+S  WP DVISMVVGR GEQ I TI+P     G P YP LP +T+  +IEEIRRTVLVTNLD     +QV +FF   AEVK +RMAGSD+E AAYVEFT+Q+SVVKAFG+MGT L  R IM+QHSN AI+KP++ + GLE++ ++
Sbjct:   62 VCFIKFADAINAEVALHLHNTMFLDRALIILPVVTE-GGTIPDEKYAELVRAPLHTSAGIHPRSALWPLDVISMVVGRPGEQVIQTIDPQLSSMGFPAYPPLPAATDCNRIEEIRRTVLVTNLDPKLTCEQVLEFFNNHAEVKCVRMAGSDDERAAYVEFTEQASVVKAFGLMGTKLGDRQIMVQHSNCAIIKPNSSLAGLEDTIKK 267
[Close]
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0X3Q2Y5 (Putative splicing factor, arginine/serine-rich 7 (Fragment) OS=Schistocephalus solidus OX=70667 GN=RSP7 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.885e-71
Identity = 117/207 (56.52%), Postives = 152/207 (73.43%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846
            V ++ Y    +AE +LHL+NT+F DRALIVLPL D     IPD NY+N+VRAP  T  G+LP+S NWP DVISMVVGR GEQ+I TIEP     G P+YP LP +T+V +IEEIRRTV ++NL   T  ++V +FF   AEVK +RMAG+D + AAYVEFT+Q SVVKAFG+MG  +  R IM+QHSN AI+KP++ + GLE++ ++
Sbjct:   51 VCFVKYADVVNAEVSLHLNNTIFLDRALIVLPLVDG-RDTIPDENYSNLVRAPPHTAAGVLPRSANWPLDVISMVVGRPGEQAIHTIEPRLATMGFPSYPPLPAATDVNRIEEIRRTVFISNLSPKTTGEEVLEFFNAHAEVKCVRMAGTDEDRAAYVEFTEQPSVVKAFGLMGATIGDRQIMVQHSNCAIIKPASALLGLEDTAKK 256
[Close]
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0R3TNQ8 (RRM domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS9033 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 9.717e-71
Identity = 119/207 (57.49%), Postives = 147/207 (71.01%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846
            V +I +    +AE ALHLHNT+F DRALI+LP+       IPD  YA +VRAP  T  GI P+S  WP DVISMVVGR GEQ I TI+P     G P YP LP +T+  +IEEIRRTVLVTNLD     +QV +FF   AEVK +RMAGSD E AAYVEFT+QSS+VKAFG+MG+ L  R IM+QHSN AI+KP++ + GLE++ ++
Sbjct:   51 VCFIKFADAINAEVALHLHNTMFLDRALIILPVVTE-NATIPDEKYAELVRAPLHTSAGIHPRSTLWPLDVISMVVGRPGEQVIQTIDPRLSSMGFPAYPPLPAATDCNRIEEIRRTVLVTNLDPKLTGEQVLEFFNNHAEVKCVRMAGSDEERAAYVEFTEQSSIVKAFGLMGSTLGDRQIMVQHSNCAIIKPNSSLAGLEDNIKK 256
[Close]
BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Match: A0A0R3U415 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1363 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.595e-70
Identity = 121/207 (58.45%), Postives = 149/207 (71.98%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRR 846
            V YI Y    +AE ALHLHNT+F DRALIVLP+ D     IPD  YAN+VRAP  T  GI P+S +WP DV+SMVVGR GEQ I TI+P     G P YP LP +T+  +IEEIRRTVLVTNLD  T  +QV ++F   AEVK +RMAG++ E AAYVEFT+Q SVVKAFG+MG  +  R IMIQHSN AI+KP++ + GL+++ +R
Sbjct:   26 VCYIRYADAINAEVALHLHNTMFLDRALIVLPVVDG-KNAIPDEKYANLVRAPLHTSAGIHPRSASWPLDVVSMVVGRPGEQVIQTIDPRLASLGFPVYPPLPAATDCNRIEEIRRTVLVTNLDPKTTGEQVLEYFNAHAEVKCVRMAGTNGERAAYVEFTEQPSVVKAFGLMGGTIGDRQIMIQHSNCAIIKPTSALPGLDDTVKR 231
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: srek1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:NCBI gene;Acc:107197895])

HSP 1 Score: 119.398 bits (298), Expect = 3.930e-34
Identity = 82/215 (38.14%), Postives = 110/215 (51.16%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWP--------RDVISMVVG---------RTG-EQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            V YI Y        A HL NTVF DRALIV+P   C  G+IP+   A  + AP   V  ++P     P         D IS  +G           G E S+  +        +P    +  + + +K++EIRRTV V NL+S TT A+Q+ +FF+ V EVKF+RMAG + +    A+VEF +Q SV +A    G     RP+ I HSN AIVKP
Sbjct:   53 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPAAPVASLMPGGGLLPIPTPAPLQNDTISFQLGLPLPARGPLAAGLESSVAAL------SAVPAQVPIMGNVDPSKVDEIRRTVYVGNLNSQTTTAEQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFANQESVSRALAFNGVMFGDRPLKINHSNNAIVKP 258

HSP 2 Score: 45.8246 bits (107), Expect = 3.930e-34
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQI+N++A+V  + ++TLFGF+G I E ++Y  +   L   +KV + KY
Sbjct:    9 VIQITNLSASVNSDQMRTLFGFLGDIEELRLYPPDNTPLSFSSKVCYIKY 58
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: srek1 (splicing regulatory glutamic acid and lysine rich protein 1 [Source:NCBI gene;Acc:107197895])

HSP 1 Score: 119.398 bits (298), Expect = 3.965e-34
Identity = 82/215 (38.14%), Postives = 110/215 (51.16%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWP--------RDVISMVVG---------RTG-EQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDS-TTNAQQVHDFFQPVAEVKFIRMAGSDNENA--AYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            V YI Y        A HL NTVF DRALIV+P   C  G+IP+   A  + AP   V  ++P     P         D IS  +G           G E S+  +        +P    +  + + +K++EIRRTV V NL+S TT A+Q+ +FF+ V EVKF+RMAG + +    A+VEF +Q SV +A    G     RP+ I HSN AIVKP
Sbjct:   53 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVP---CAEGKIPEEAKALSLLAPAAPVASLMPGGGLLPIPTPAPLQNDTISFQLGLPLPARGPLAAGLESSVAAL------SAVPAQVPIMGNVDPSKVDEIRRTVYVGNLNSQTTTAEQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFANQESVSRALAFNGVMFGDRPLKINHSNNAIVKP 258

HSP 2 Score: 45.8246 bits (107), Expect = 3.965e-34
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 3 
Query:   15 IIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +IQI+N++A+V  + ++TLFGF+G I E ++Y  +   L   +KV + KY
Sbjct:    9 VIQITNLSASVNSDQMRTLFGFLGDIEELRLYPPDNTPLSFSSKVCYIKY 58
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: srsf11 (serine/arginine-rich splicing factor 11 [Source:NCBI gene;Acc:103035453])

HSP 1 Score: 48.1358 bits (113), Expect = 9.325e-11
Identity = 19/55 (34.55%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKYV 161
            S +N++Q++N++ + T E ++TLFGF+G I E K++  +   L   ++V F K++
Sbjct:    3 SSTNVVQVTNVSPSATSEQMRTLFGFLGNIEELKLFPPDDSPLPVTSRVCFVKFL 57

HSP 2 Score: 38.1206 bits (87), Expect = 9.325e-11
Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:  274 HLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVT 399
            HL NTVF DRALIV+P A+   G IPD + A  + AP   V 
Sbjct:   67 HLTNTVFVDRALIVVPFAE---GVIPDESKALSLLAPANAVA 105
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Match: ENSAMXT00000008946.2 (serine/arginine-rich splicing factor 11-like [Source:NCBI gene;Acc:103022692])

HSP 1 Score: 43.5134 bits (101), Expect = 9.150e-10
Identity = 13/34 (38.24%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIY 110
            +N++Q++N++ + T E ++TLFGF+G I E +++
Sbjct:    5 TNVVQVTNVSPSTTSEQMRTLFGFLGTIEELRLF 38

HSP 2 Score: 39.6614 bits (91), Expect = 9.150e-10
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAP 384
            V ++ ++       A HL NTVF DRALIV+P A+   G IPD + A  + AP
Sbjct:   51 VCFVRFQEQESVGVAQHLTNTVFVDRALIVVPYAE---GVIPDESKALSLLAP 100
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Sea Lamprey
Match: srsf11 (serine and arginine rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605])

HSP 1 Score: 47.3654 bits (111), Expect = 5.668e-14
Identity = 18/54 (33.33%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            +M+++IQ++N+A   T E +KTLFGF+G I + +++  +   L   ++V F ++
Sbjct:   37 TMTDVIQVTNVAPAATTEQMKTLFGFLGKIEDIRVFPHDDSPLPVTSRVCFVRF 90

HSP 2 Score: 47.3654 bits (111), Expect = 5.668e-14
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILP 411
            V ++ +  +     + HL NTVF DRALIV+P A+   G+IPD   A  + AP   V G+LP
Sbjct:   85 VCFVRFSDSVSVGVSQHLTNTVFIDRALIVVPYAE---GKIPDEAKALSLLAPASAVAGLLP 143
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923])

HSP 1 Score: 48.1358 bits (113), Expect = 4.519e-6
Identity = 28/89 (31.46%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:  532 PYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHS 786
            P ++ +   E   RTV    L +   A+ + +FF  V +V+ +R+    N    +  AY+EF D  SV  A G+ G  L   PI++Q S
Sbjct:  161 PSTSTLTPEERDSRTVFCMQLAARIRAKDLEEFFSAVGKVRDVRLISDRNSRRSKGIAYIEFVDLDSVPLAIGLTGQRLLGVPIIVQAS 249
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Nematostella
Match: EDO43975 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RX62])

HSP 1 Score: 82.4185 bits (202), Expect = 8.700e-23
Identity = 59/194 (30.41%), Postives = 90/194 (46.39%), Query Frame = 1 
Query:  268 ALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPT------------YPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNE--NAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKP 807
            ALHL NTVF D++LIV+P++D              V   +K +  +   S        ++ +G  G+   I   P+ I Q + +             P    + +  K+EEIRRTV V NLD    A+ +  FF    ++K+IRM G D +    AY+EF +  ++V A    G     +PI + HS  A+ KP
Sbjct:   69 ALHLTNTVFIDKSLIVVPVSD------------EPVSEEEKALQLVAASS--------ALALG-MGDGGGILPTPALIPQLMSSSGNTIAVPSSVPPPPPLTNVDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSALQYSGAIFGGKPIKVTHSKNAVSKP 241

HSP 2 Score: 43.1282 bits (100), Expect = 8.700e-23
Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFE-EALQEETKVIFYKYV 161
            + +IQ+SN+A   T E +K LF FIG + + K++ E  A+  ++KV F K+V
Sbjct:   10 TKLIQVSNVAHNATLEQLKVLFSFIGEVEDLKLFPESPAITVQSKVCFVKFV 61
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Nematostella
Match: EDO33926 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQW0])

HSP 1 Score: 49.2914 bits (116), Expect = 2.941e-6
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  523 PKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDN----ENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMI 777
            P  P + E A+ E+ +RTV    L      + + +FF  V +V  +R+    N    +  AY+EFTD+S+V  A G+ G  L   PIM+
Sbjct:  104 PPEPMTEESAE-EKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAVPLAIGLSGQKLLGAPIMV 191
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Match: srsf11 (serine/arginine-rich splicing factor 11 [Source:NCBI gene;Acc:101163805])

HSP 1 Score: 45.4394 bits (106), Expect = 7.006e-12
Identity = 18/55 (32.73%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:    3 SMSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKYV 161
            S +++IQ++N++ + T E ++TLFG++G I E K++  +   L   ++V F K++
Sbjct:    3 STTHVIQVTNVSPSTTSEQMRTLFGYLGTIEELKLFPPDDSPLPVTSRVCFVKFL 57

HSP 2 Score: 44.669 bits (104), Expect = 7.006e-12
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  274 HLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILP 411
            HL NTVF DRALIV+P A+   G IPD + A  + AP   V G++P
Sbjct:   67 HLTNTVFVDRALIVVPFAE---GVIPDESKAMSLLAPANAVAGMMP 109
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Match: ENSORLT00000034590.1 (pep primary_assembly:ASM223467v1:17:27011354:27013388:-1 gene:ENSORLG00000030366.1 transcript:ENSORLT00000034590.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 44.2838 bits (103), Expect = 5.664e-9
Identity = 16/52 (30.77%), Postives = 34/52 (65.38%), Query Frame = 3 
Query:    9 SNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            + ++Q++N++ + T E ++TLFGF+G I E K++  +   +   ++V F K+
Sbjct:    5 TKVVQVTNVSPSTTSEQMRTLFGFLGTIEELKLFPPDDSPMPVTSRVCFVKF 56

HSP 2 Score: 36.1946 bits (82), Expect = 5.664e-9
Identity = 16/40 (40.00%), Postives = 24/40 (60.00%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQ 345
            V ++ ++       + HL NTVF DRALIV+P A+   G+
Sbjct:   51 VCFVKFQEPESVGVSQHLTNTVFVDRALIVVPFAEVKKGK 90
[Close]
BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Match: ENSORLT00000003382.2 (pep primary_assembly:ASM223467v1:12:4422085:4431270:-1 gene:ENSORLG00000002711.2 transcript:ENSORLT00000003382.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 40.0466 bits (92), Expect = 3.947e-8
Identity = 17/47 (36.17%), Postives = 31/47 (65.96%), Query Frame = 3 
Query:   24 ISNIAATVTEENIKTLFGFIGAIREAKIYFEE--ALQEETKVIFYKY 158
            ++N+++ V+ E ++TLFGF+G I E ++Y  +   L   +KV + KY
Sbjct:    9 VTNLSSAVSSEQMRTLFGFLGDIEELRLYPPDNTTLNFSSKVCYIKY 55

HSP 2 Score: 37.7354 bits (86), Expect = 3.947e-8
Identity = 19/35 (54.29%), Postives = 21/35 (60.00%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLAD 330
            V YI Y        A HL NTVF DRALIV+P A+
Sbjct:   50 VCYIKYREPSSVGVAQHLTNTVFIDRALIVVPCAE 84
[Close]
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1)

HSP 1 Score: 468.003 bits (1203), Expect = 2.709e-160
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 876
            VSYIVYESN DAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG
Sbjct:   46 VSYIVYESNSDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 262

HSP 2 Score: 109.768 bits (273), Expect = 2.864e-25
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 
Query: 1213 TDGKRKPHENKSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSPDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVXXXXXXKTDV 1632
            TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKI+KSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV
Sbjct:  375 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKIKKSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV 514

HSP 3 Score: 95.1301 bits (235), Expect = 2.070e-20
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:    6 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVIFYKY 158
            MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKV +  Y
Sbjct:    1 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVSYIVY 51
[Close]
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1)

HSP 1 Score: 459.529 bits (1181), Expect = 8.123e-157
Identity = 216/227 (95.15%), Postives = 216/227 (95.15%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQ----------QVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 876
            VSYIVYESN DAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQ          QVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG
Sbjct:   46 VSYIVYESNSDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQTDSSLCMTLQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 272

HSP 2 Score: 110.153 bits (274), Expect = 3.003e-25
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 
Query: 1213 TDGKRKPHENKSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSPDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVXXXXXXKTDV 1632
            TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKI+KSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV
Sbjct:  385 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKIKKSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV 524

HSP 3 Score: 95.1301 bits (235), Expect = 1.927e-20
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:    6 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVIFYKY 158
            MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKV +  Y
Sbjct:    1 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVSYIVY 51
[Close]
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1)

HSP 1 Score: 274.633 bits (701), Expect = 5.882e-95
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 1 
Query:  226 VSYIVYESNCDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQ 618
            VSYIVYESN DAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQ
Sbjct:   46 VSYIVYESNSDAETALHLHNTVFHDRALIVLPLADCCGGQIPDLNYANVVRAPDKTVTGILPKSKNWPRDVISMVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNLDSTTNAQQ 176

HSP 2 Score: 93.5893 bits (231), Expect = 5.882e-95
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:    6 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVIFYKY 158
            MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKV +  Y
Sbjct:    1 MSNIIQISNIAATVTEENIKTLFGFIGAIREAKIYFEEALQEETKVSYIVY 51
[Close]
BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Match: SMESG000041611.1 (SMESG000041611.1)

HSP 1 Score: 158.303 bits (399), Expect = 1.482e-43
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:  664 MAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 876
            MAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG
Sbjct:    1 MAGSDNENAAYVEFTDQSSVVKAFGMMGTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNG 71

HSP 2 Score: 111.309 bits (277), Expect = 1.044e-26
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 1 
Query: 1213 TDGKRKPHENKSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSPDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVXXXXXXKTDV 1632
            TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKI+KSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV
Sbjct:  184 TDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTDKHRDERRKKHSSPDHKEKREKIKKSEEKNKKVEEKIVKREKINGENKAKSISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV 323
The following BLAST results are available for this feature:
BLAST of Splicing factor arginine:serine rich vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SREK12.489e-3639.04splicing regulatory glutamic acid and lysine rich ... [more]
SREK15.038e-2041.01splicing regulatory glutamic acid and lysine rich ... [more]
SRSF111.017e-932.00serine and arginine rich splicing factor 11 [Sourc... [more]
SRSF112.129e-932.00serine and arginine rich splicing factor 11 [Sourc... [more]
SRSF112.217e-932.00serine and arginine rich splicing factor 11 [Sourc... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rsp-79.766e-2635.64Probable splicing factor, arginine/serine-rich 7 ... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
Srp547.057e-3133.51gene:FBgn0024285 transcript:FBtr0079875[more]
Caper4.952e-732.95gene:FBgn0031883 transcript:FBtr0089640[more]
Caper4.952e-732.95gene:FBgn0031883 transcript:FBtr0089636[more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srek13.279e-3438.42splicing regulatory glutamine/lysine-rich protein ... [more]
srek13.304e-3438.42splicing regulatory glutamine/lysine-rich protein ... [more]
srsf117.301e-1035.19serine and arginine rich splicing factor 11 [Sourc... [more]
srsf114.807e-935.19serine and arginine rich splicing factor 11 [Sourc... [more]
srsf118.748e-935.19serine and arginine rich splicing factor 11 [Sourc... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 3
Match NameE-valueIdentityDescription
cdkal16.924e-3233.08CDK5 regulatory subunit associated protein 1-like ... [more]
srsf114.697e-1033.33Xenopus tropicalis serine/arginine-rich splicing f... [more]
rbm396.728e-634.41RNA binding motif protein 39 [Source:NCBI gene;Acc... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Srek11.400e-3437.78splicing regulatory glutamine/lysine-rich protein ... [more]
Srek12.284e-2143.38splicing regulatory glutamine/lysine-rich protein ... [more]
Srek12.340e-2043.38splicing regulatory glutamine/lysine-rich protein ... [more]
Srek11.853e-1943.08splicing regulatory glutamine/lysine-rich protein ... [more]
Srsf117.668e-1032.00serine/arginine-rich splicing factor 11 [Source:MG... [more]
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BLAST of Splicing factor arginine:serine rich vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|O01159|RSP7_CAEEL1.021e-2435.64Probable splicing factor, arginine/serine-rich 7 O... [more]
sp|Q8WXA9|SREK1_HUMAN2.419e-1941.01Splicing regulatory glutamine/lysine-rich protein ... [more]
sp|Q9JKL7|SREK1_RAT1.144e-1843.08Splicing regulatory glutamine/lysine-rich protein ... [more]
sp|Q8BZX4|SREK1_MOUSE1.297e-1843.08Splicing regulatory glutamine/lysine-rich protein ... [more]
sp|Q05519|SRS11_HUMAN9.777e-932.00Serine/arginine-rich splicing factor 11 OS=Homo sa... [more]
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BLAST of Splicing factor arginine:serine rich vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3P6ZHG21.522e-7358.94RRM domain-containing protein OS=Hymenolepis dimin... [more]
A0A0R3SQL81.571e-7358.94RRM domain-containing protein OS=Hymenolepis dimin... [more]
A0A0X3Q2Y51.885e-7156.52Putative splicing factor, arginine/serine-rich 7 (... [more]
A0A0R3TNQ89.717e-7157.49RRM domain-containing protein OS=Rodentolepis nana... [more]
A0A0R3U4158.595e-7058.45Uncharacterized protein OS=Mesocestoides corti OX=... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
srek13.930e-3438.14splicing regulatory glutamic acid and lysine rich ... [more]
srek13.965e-3438.14splicing regulatory glutamic acid and lysine rich ... [more]
srsf119.325e-1134.55serine/arginine-rich splicing factor 11 [Source:NC... [more]
ENSAMXT00000008946.29.150e-1038.24serine/arginine-rich splicing factor 11-like [Sour... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2
Match NameE-valueIdentityDescription
srsf115.668e-1433.33serine and arginine rich splicing factor 11 [Sourc... [more]
RBM394.519e-631.46RNA binding motif protein 39 [Source:HGNC Symbol;A... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO439758.700e-2330.41Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO339262.941e-633.71Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Splicing factor arginine:serine rich vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
srsf117.006e-1232.73serine/arginine-rich splicing factor 11 [Source:NC... [more]
ENSORLT00000034590.15.664e-930.77pep primary_assembly:ASM223467v1:17:27011354:27013... [more]
ENSORLT00000003382.23.947e-836.17pep primary_assembly:ASM223467v1:12:4422085:443127... [more]
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BLAST of Splicing factor arginine:serine rich vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000041611.12.709e-16099.54SMESG000041611.1[more]
SMESG000041611.18.123e-15795.15SMESG000041611.1[more]
SMESG000041611.15.882e-9599.24SMESG000041611.1[more]
SMESG000041611.11.482e-43100.00SMESG000041611.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010103 ID=SMED30010103|Name=Splicing factor arginine:serine rich|organism=Schmidtea mediterranea sexual|type=transcript|length=1724bp
CTAGTATGAGTAATATTATCCAGATATCAAATATTGCTGCAACTGTCACA
GAGGAAAATATAAAAACCCTATTTGGGTTTATTGGAGCTATTAGAGAAGC
AAAAATTTACTTTGAAGAAGCTCTTCAAGAAGAAACAAAAGTAATATTTT
ATAAATATGTATATTGCCATTAGGAGTATTGTTTTTGTTATAACAACATG
GAAAATTATTGAAATTTTCTTATAGGTTTCTTACATAGTTTACGAAAGCA
ATTGTGACGCAGAAACAGCGCTTCATCTTCACAACACTGTATTTCATGAT
CGAGCATTAATTGTTTTGCCTTTAGCAGATTGTTGCGGTGGTCAAATTCC
AGATCTAAATTATGCCAACGTAGTTCGTGCACCAGACAAAACAGTAACTG
GAATTCTTCCGAAGTCTAAAAATTGGCCTCGGGATGTAATAAGTATGGTT
GTTGGTAGAACCGGTGAGCAATCAATCATAACAATTGAACCGAGCTTTAT
AAAACAGGGTTTACCAACTTATCCAAAATTACCATACAGTACAGAAGTAG
CAAAAATAGAGGAGATTCGACGAACGGTTTTGGTGACGAATCTTGATTCT
ACAACTAATGCTCAGCAAGTACATGATTTTTTTCAACCAGTTGCTGAAGT
AAAATTTATTAGAATGGCCGGTTCGGACAATGAAAATGCGGCATATGTCG
AGTTTACCGACCAATCATCAGTCGTTAAGGCATTCGGGATGATGGGGACG
AACTTGAACTCAAGACCGATTATGATCCAGCATTCTAATGTTGCGATAGT
GAAACCGTCAAATTACATGCGAGGACTGGAGGAGTCCAATAGGAGGATTG
TTAGAGATTCCGACAGTGTCAATGGTCGAAGCAGATCAAAAACCAGGGAC
AAAAGAGTATCAAAATCCAGAAAGCGTTCTCGATCTCGGAGGAGGAGCAA
ATCACAGAAAACTGCGAGATCTCGTCGGCGCTCAAAATCTCGTTCTCGTC
GACCCTCGAAATCCAAACGAAAATCAATTTCCAGATCTCGTAGGAGTCGA
AGCAGATCGAAAAATAAGAAACCGAGGAAAAGATCTCGAACTCGTTCGAA
AGATCGCAAAAGGCGGAGTAAAGAACGAAGCAAAGATCGAAGAAAAGAAC
GCTCGAGATCTCATCAGAGGAAATCGAAACGGAGATCTCGATCAAAACGA
AGGGAAGAATCGACTGATGGCAAACGTAAACCGCATGAAAATAAATCAGT
CGATAACAAAGATAAAATTAACAAAGACAAAAATAACAAAGATAAAGATA
ATAAAGATAAAGATAAACTAAAAGACAGAAAACGGAAAACAGACAAACAC
AGAGACGAGAGGAGAAAAAAACATTCGAGTCCAGATCACAAAGAAAAGAG
AGAGAAAATTAGGAAAAGTGAAGAGAAAAATAAGAAAGTTGAAGAGAAAA
TCGTAAAGAGAGAGAAAATCAATGGTGAAAATAAAGCGAAATCGATTTCA
CAGGAACCGGTGGAAATCGGTAATAAATCAGCAGCTATCAAACTCCGAGA
ACCGCCGGGTGATGAAATTGATTGCTCCGGCTTGAAACAAGAAGCAATTG
TCAATAATGATAATGATAATAAGACTGATGTTTGAATGGTTTTAAATATA
AATTTTATTTGTTTCTCGTTTTATCGGCTTCACAATTCCGCATCGCATTC
TGTTGTACATATCTAATGTTGCAT
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protein sequence of SMED30010103-orf-1

>SMED30010103-orf-1 ID=SMED30010103-orf-1|Name=SMED30010103-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=397bp
MVVGRTGEQSIITIEPSFIKQGLPTYPKLPYSTEVAKIEEIRRTVLVTNL
DSTTNAQQVHDFFQPVAEVKFIRMAGSDNENAAYVEFTDQSSVVKAFGMM
GTNLNSRPIMIQHSNVAIVKPSNYMRGLEESNRRIVRDSDSVNGRSRSKT
RDKRVSKSRKRSRSRRRSKSQKTARSRRRSKSRSRRPSKSKRKSISRSRR
SRSRSKNKKPRKRSRTRSKDRKRRSKERSKDRRKERSRSHQRKSKRRSRS
KRREESTDGKRKPHENKSVDNKDKINKDKNNKDKDNKDKDKLKDRKRKTD
KHRDERRKKHSSPDHKEKREKIRKSEEKNKKVEEKIVKREKINGENKAKS
ISQEPVEIGNKSAAIKLREPPGDEIDCSGLKQEAIVNNDNDNKTDV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0000381regulation of alternative mRNA splicing, via spliceosome
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000012neural progenitor cell
PLANA:0000019muscle progenitor cell
PLANA:0000020protonephridia
PLANA:0000099neuron
PLANA:0002109X1 cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 275..295
NoneNo IPR availableCOILSCoilCoilcoord: 315..342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..396
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..347
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..250
NoneNo IPR availablePANTHERPTHR32343FAMILY NOT NAMEDcoord: 29..122
NoneNo IPR availablePANTHERPTHR32343:SF8LD29830Pcoord: 29..122
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 44..112
e-value: 1.4E-9
score: 47.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 45..109
e-value: 7.8E-7
score: 28.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 43..116
score: 11.52
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 38..116
e-value: 3.1E-11
score: 45.3
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 42..115