SMED30010045

Overview
NameSMED30010045
Smed IDSMED30010045
Length (bp)3066
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30010045 (SMED30010045) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30010045 (SMED30010045) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30010045 (SMED30010045) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30010045 (SMED30010045) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30010045

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30010045h1SMcG0013800 PL06004B1C06smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30010045h1SMcG0013800 PL08001A1G06smed_ncbi_20240424PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
Smed sexual biotypeSMED30010045h1SMcG0013800 Contig38768uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30010045h1SMcG0013800 Contig38768newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30010045h1SMcG0013800 dd_Smed_v4_6917_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30010045h1SMcG0013800 dd_Smed_v6_11688_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30010045 vs. Ensembl Xenopus
Match: SUSD2 (sushi domain containing 2 [Source:NCBI gene;Acc:105946288])

HSP 1 Score: 61.6178 bits (148), Expect = 6.335e-9
Identity = 41/130 (31.54%), Postives = 65/130 (50.00%), Query Frame = 1 
Query: 1474 NGVTCCYNKTTNALLY----GQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            +G  CCY+ T   +L     G     R +   GS  ++  P      H++YD++    CC  SDN   C    D R + + ++++     + FGDPHF+ F   SKYT+  KG++ LV + +  L +QAR
Sbjct:  351 SGQQCCYDSTGAQVLTFDSTGGSTPDRGHDW-GSPPYRKPPRVPGFSHWMYDVVTFYYCCLWSDN---CQYYMDLRPSSDCRTYKPPKAASGFGDPHFVTFD-GSKYTFNGKGEYTLVSSSHKSLSIQAR 475
[Close]
BLAST of SMED30010045 vs. Ensembl Xenopus
Match: SUSD2 (sushi domain containing 2 [Source:NCBI gene;Acc:105946288])

HSP 1 Score: 61.6178 bits (148), Expect = 7.160e-9
Identity = 41/130 (31.54%), Postives = 65/130 (50.00%), Query Frame = 1 
Query: 1474 NGVTCCYNKTTNALLY----GQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            +G  CCY+ T   +L     G     R +   GS  ++  P      H++YD++    CC  SDN   C    D R + + ++++     + FGDPHF+ F   SKYT+  KG++ LV + +  L +QAR
Sbjct:  349 SGQQCCYDSTGAQVLTFDSTGGSTPDRGHDW-GSPPYRKPPRVPGFSHWMYDVVTFYYCCLWSDN---CQYYMDLRPSSDCRTYKPPKAASGFGDPHFVTFD-GSKYTFNGKGEYTLVSSSHKSLSIQAR 473
[Close]
BLAST of SMED30010045 vs. Ensembl Xenopus
Match: SUSD2 (sushi domain containing 2 [Source:NCBI gene;Acc:105946288])

HSP 1 Score: 61.2326 bits (147), Expect = 9.853e-9
Identity = 41/130 (31.54%), Postives = 65/130 (50.00%), Query Frame = 1 
Query: 1474 NGVTCCYNKTTNALLY----GQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            +G  CCY+ T   +L     G     R +   GS  ++  P      H++YD++    CC  SDN   C    D R + + ++++     + FGDPHF+ F   SKYT+  KG++ LV + +  L +QAR
Sbjct:  357 SGQQCCYDSTGAQVLTFDSTGGSTPDRGHDW-GSPPYRKPPRVPGFSHWMYDVVTFYYCCLWSDN---CQYYMDLRPSSDCRTYKPPKAASGFGDPHFVTFD-GSKYTFNGKGEYTLVSSSHKSLSIQAR 481
[Close]
BLAST of SMED30010045 vs. Ensembl Xenopus
Match: SUSD2 (sushi domain containing 2 [Source:NCBI gene;Acc:105946288])

HSP 1 Score: 61.2326 bits (147), Expect = 9.962e-9
Identity = 41/130 (31.54%), Postives = 65/130 (50.00%), Query Frame = 1 
Query: 1474 NGVTCCYNKTTNALLY----GQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            +G  CCY+ T   +L     G     R +   GS  ++  P      H++YD++    CC  SDN   C    D R + + ++++     + FGDPHF+ F   SKYT+  KG++ LV + +  L +QAR
Sbjct:  352 SGQQCCYDSTGAQVLTFDSTGGSTPDRGHDW-GSPPYRKPPRVPGFSHWMYDVVTFYYCCLWSDN---CQYYMDLRPSSDCRTYKPPKAASGFGDPHFVTFD-GSKYTFNGKGEYTLVSSSHKSLSIQAR 476
[Close]
BLAST of SMED30010045 vs. Ensembl Xenopus
Match: SUSD2 (sushi domain containing 2 [Source:NCBI gene;Acc:105946288])

HSP 1 Score: 61.2326 bits (147), Expect = 1.018e-8
Identity = 41/130 (31.54%), Postives = 65/130 (50.00%), Query Frame = 1 
Query: 1474 NGVTCCYNKTTNALLY----GQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            +G  CCY+ T   +L     G     R +   GS  ++  P      H++YD++    CC  SDN   C    D R + + ++++     + FGDPHF+ F   SKYT+  KG++ LV + +  L +QAR
Sbjct:  357 SGQQCCYDSTGAQVLTFDSTGGSTPDRGHDW-GSPPYRKPPRVPGFSHWMYDVVTFYYCCLWSDN---CQYYMDLRPSSDCRTYKPPKAASGFGDPHFVTFD-GSKYTFNGKGEYTLVSSSHKSLSIQAR 481

HSP 2 Score: 57.7658 bits (138), Expect = 1.281e-7
Identity = 51/191 (26.70%), Postives = 82/191 (42.93%), Query Frame = 1 
Query: 1342 CPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFI-QMTFSENENGVTCCYNKTTNALLYGQDY----------YLRNNSIAGS-----YKWKFSPLNNLLK-----HYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            CP  L Q++         +   RF PD    Y C I   +      G   C      + LYG              L ++S+ GS     + W   P     +     H++YD+I    CC  SDN   C +  + R + + +S++     +AFGDPHFL F   +K+T+  +G++ LV +  + L++Q R
Sbjct: 1076 CPCTLAQSR---------ADTGRFHPD----YGCDIGSGSVCTYHPGAVHCVRGIYGSPLYGAGQQCCYDSRGFQVLTSDSVGGSTPDRGHDWGSPPYRKPPRVPGFSHWIYDVITFYYCCLWSDN---CQKYLELRPSSDCRSYKPPKVASAFGDPHFLTFD-GAKFTFKGRGEYTLVTSPYSSLNIQGR 1249
[Close]
BLAST of SMED30010045 vs. UniProt/SwissProt
Match: sp|H9JIQ1|MESH_BOMMO (Protein mesh OS=Bombyx mori OX=7091 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.269e-8
Identity = 100/460 (21.74%), Postives = 181/460 (39.35%), Query Frame = 1 
Query:  643 LPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFP-KLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSF------------TSSVEIYSFDEISN---PFEI----------IDIN---EMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVN-----NEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYIS-----ETITKKDYFCP---ENLLQAKGLY----STFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALL-YGQDYYLRNNSIAGSYKWKFSPLNNL-----LKHYLYDLIPITECC--SSDNDTLCSE-SWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNI--LDLQARF 1851
            LPL  +    + LGG  V I GPC+N  D    +   ES+      + D+        N    + P  W+ G  +F+++  N  +            T++ +I+  D   +   P E+           ++N   ++  W YK   IR   P +E         +D+  +   N    ++N     N   I+    +   L ++L +P++     +  +  S     L W  +     LH     +   NS C N++      +    + + CP   E+ L  KG +       R T+   R+    +    C      S   +G  CCY+K    +L Y Q   +  +  + S+ + F+P N       L  + +D+IP  +CC    +    C    +++R + +  +++       FGDPH + F    +YT+  KG++ LV   ++   LD+Q RF
Sbjct:  430 LPLMFAPESGNMLGGTIVNITGPCFNPNDRITCRFDTESVLG---AVVDV--------NRAICVQPRFWHNGYARFEVAINNEPYKWKGRYFVETPATATEKIFFPDNSVHERYPPEVRITWDRFNLTTNLNVQLQISLWGYKEVTIR---PQLE--------YIDMIEVGVANTGEYVINPQNFRNRENIMHNDMQFGFLQINLTTPEVFKGVPISPILWSRPI-PLGWYFAPQWERLH----GQRWSNSMCNNWLRTDRFLKNFAAQVWVCPCTLEHALLDKGRFMPDLDCDRDTNPTCRYH---WGGIHCVRSGAPSSEGSGQQCCYDKNGFLMLSYDQ---MWGSKPSRSHDFGFTPYNEANKVPSLSRWFHDMIPFYQCCLWQEEQAVGCETFRFERRPSQDCVAYQSPGVAGIFGDPHIVTF-DDLQYTFNGKGEYVLVRVDHSQLKLDVQGRF 855
[Close]
BLAST of SMED30010045 vs. TrEMBL
Match: V4CSU3 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_228125 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.025e-8
Identity = 104/453 (22.96%), Postives = 173/453 (38.19%), Query Frame = 1 
Query: 1468 NENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNL-----LKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNS-LLKAIVFRIPS-----IRISITLSTNNR---------------TNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLF--------FEKI-DIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKI 2721
            + +G  CCY +  N + Y  D Y + ++   S+ W   P N       L H+ +D++    CC       C    ++R   + K+++       FG+ H L F   S    + +GDF LV T N  + +Q RF    +  NS  L  I  +  S     +RIS   S N+R                +  W+ L     I + +     H+N  I  NS    + I + + +   + F +                     ++K+I SG L    DN  E   L  P+     +     +    F  +W  +E D+LF        FE I ++P +       S    C    +C+ D     +E++  T+    ++   I+       +    CG   + + + SS N++ NS I+I GC   K  + SG     C   S+    WK  PK+
Sbjct:  362 DGSGNQCCYGRDGN-VRYAADSY-QGSTPDRSHDWGAEPYNKPNRVPSLSHWKHDVVTFYYCCLWVEYKYCDYYMEQRATRDCKNYKPPKTAAIFGESHLLRFDGIS-LNGVGEGDFWLVKTPN--MKIQGRFNRVKENLNSTALIGITVKDKSSSKIEVRISKPFSANSRKLTVLVDDDIKTFDTKSTKWQDLRGLT-IINSETREDRHDNFTIILNS---DVGIRVGVKQDRLVVFVV------------------LPQSLKNISSGLLGSWSDN--EKNKLKQPDGSLLSSSLLPTEIYTSFTSQWIVSEADNLFQYSMTDSSFEPIFELPPLPSDVTEESVKALCGDSDVCQFDYRATASEDVATTSLHAEDWYHQIQ----SYQIPVDACGLLDVPRGKKSSFNYNINSSITITGC---KSGLLSGTTHYTCLPTSDGSVEWK--PKV 776
[Close]
BLAST of SMED30010045 vs. TrEMBL
Match: A0A210QNJ1 (Uncharacterized protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT23936 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.207e-7
Identity = 163/783 (20.82%), Postives = 275/783 (35.12%), Query Frame = 1 
Query:  397 ENQCQAIIVWDSKRTFLILN--------------EP----NKTKDSLNITLGKGLNQF-------DSFRNMPPL--YFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEM---KNWYYKRDNIRI--SIPNIESCVKFSFYAVDLAMIDKNNIP-ISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELR-WSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDY-FCPENLLQAK----------------GLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYK--WKFSPLNNL---LKHYLYDLIPITECCS------SDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARF--YHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKT---KLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKV-----DNQAESTG-LYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKS 2526
             N  QA+++ + + +F I N               P      T   +    G G+N +       D+  N+P L       + +F I T  + + GC          T   L +S    H  GGEK  + GPC    D    +     ++ N  +        +   S A ++PI + TG     L+    S   S        I NP  +  + +     NW  + D + +  S P+I   ++ S+  +     D ++IP I   +  ++ ++  Q    L +D     I V S V     +  +   R WS++F ++  +  +S       Q  +    +++  D   CP  L QA+                G   +   TSIN    P   Q   CF   T      G  CCY+        G    +  +S  GS +    F   ++    L + +YD  P   CC+      SD  + C     +R   N   +  +     FGDPHF+     S YT+   G+F L  T+ N    Q R      T  Q S++ ++V    +    + +  N+       +      I  +  L +    + I  N   T      + +   E   I F+I  Y        ++N    F   +K     GL G +     D+    TG + P NS   +               W+  E++SLF   +     ++  +   TF     + +  +D  N   E     T   Y+Y +T +    +S
Sbjct:  166 RNSFQAVLITNGRHSFTIYNYYEITWTTGTASGGTPAEGLGGTPAQVGFNAGDGVNYYAVNESRTDAIINLPRLSNVHVDGKFVFRIDTETIEQGGC---------NTGGTLTISPRYSHMFGGEKKLLSGPCIQSNDTLTAVFGRGASSINCVM--------HSQFSVACVTPIFYTTGDVSVALTVTT-SNQQSATYEGMITILNPLNMKPVLQRLDPSNW-RRGDEVTLTWSTPHIPFDIEGSYVEIYTIKPDLDHIPRIYYHSKAVQYIESIQTEVTLTLDTKDDVI-VLSLVELTQGNDQTQRQRVWSDAFVVIPKNITESKASCTRWQTTDDQLPSLSGVDVQVCPCRLDQAEIDLVRFHPDPMCQSPDGSQQSDADTSINCLVHPHAKQ---CFRLNTPGTRGTGQLCCYDDN------GSIMNMLTSSGGGSLQRYHYFGDTDDAVPYLSNIVYDTAPYYHCCAYPHLFQSDVPSECYRFHQRRTPGNCNEYVPNTPAQNFGDPHFVTPDGLS-YTFNGVGEFTLFKTKTNTFIAQVRMQSLGTTGNQGSVITSVVANAANASDRVEVRLNSIRGFDILVNGVLEDITDVQFLRYTGVIISILDNPSTTNNHTKQVNVAFPEQ-DIAFQILIYG------SFLNYVVSFGQGVKRGSIEGLLGNLNQDPKDDLVSQTGDVLPSNSSTEVIHNR-------MGMSWRITEDESLFTYAV---GTSYDSVQDKTFSPVFDVPVSAVD--NATRELCGNDTFCYYDYYVTGDNTMARS 899
[Close]
BLAST of SMED30010045 vs. TrEMBL
Match: R7VEB8 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_222578 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.032e-7
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = 1 
Query: 1438 VCFIQMTFSENENGVTCCYNKTTNALLYGQDYY----LRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDK----RHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRN-NILD------LQARF 1851
             CF  +  SE  + +TCCY+   N L+Y  D         +S +G + +  + L   L H++ DL+P   CC    D    + +D+    R   + K +E     +AFGDPH++ F   +KYT+  +G+F L++    N+L       LQAR 
Sbjct:  623 ACFKALYVSEAGSSITCCYDDHDN-LMYSGDSVGGSTAHRSSPSGRFPYGEASLVPSLSHWMLDLVPYFSCCKWQTDM--QDCYDRYMPARPTQDCKYYEPAAHASAFGDPHYITFD-GTKYTFNGRGEFYLLLVEGANVLGNEVSFRLQARM 771
[Close]
BLAST of SMED30010045 vs. TrEMBL
Match: A0A0B7AYM4 (Uncharacterized protein (Fragment) OS=Arion vulgaris OX=1028688 GN=ORF152349 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.035e-7
Identity = 89/416 (21.39%), Postives = 158/416 (37.98%), Query Frame = 1 
Query: 1342 CPENLLQAKGLYSTFRS---TSINLRFQPD----DFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLN-NLLKHYLY---DLIPITECCS-SDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLST-NNRTNIPWKILAAT----NKIFSIDALPFYHENVLIFQ-NSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLF--------------------FEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTT 2475
            CP  L QA+G  + +      + N RF  +          C +    S  +    CCY+K T  LL      L  +      ++ F     N++  + Y   ++ P   CC  S N TLC +    R  +  + ++      A GDPH +    S +YT+   G+F LV  +++   +Q R     + QN    A VF   + + S + ST   R  +P +    T    +++F + +       + +F  NS    +++ +       +  ++      +   E +N+     + +K  +  GL G  +   +ST  +  +    +      +++  F   W  + NDSLF                    +  + I  V   E+ S T   CD   +C+ D     NE I L T
Sbjct:  123 CPCTLRQAEGDTAQYTQDPFCTRNPRFISNCNYRSKSASQCIMPNQMSIEKGAFVCCYDKITGELLVA----LEGHGGGTMERYHFRQSGPNIVPCFTYMQEEISPYLHCCEFSQNQTLCGQYLKIRQPVGCQGYQPPAAAQAAGDPHIVTLD-SCQYTFNGVGEFTLVKVKDSQSTVQVRAVPVQNNQNEPQGATVFTAIAFKASNSSSTLEIRLRMPGEQELVTVYKDSELFPLISTTSQLSEMTVFANNSQNATVELTV-------VMVDVGLSVLVQATDEMLNIMVMAGSQLKGQLE-GLLGNYN--GDSTDDFTASDGTVLEPNATMREVHKFGMSWLVSGNDSLFTVDPVSEFDSSSSEVTDKPTYTPVFIDEVQDHELPSDTQRVCDGNRLCQFDYRVTENEAIALAT 523
[Close]
BLAST of SMED30010045 vs. TrEMBL
Match: A0A1X7UKS6 (Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 6.970e-7
Identity = 62/228 (27.19%), Postives = 99/228 (43.42%), Query Frame = 1 
Query: 1285 FNSQCQNY-ISE---------TITKKDYFCPENLLQAKGLYSTFRSTSIN--LRFQPDDFQKYVCFIQMTFSENENGVT-CCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSP--------LNNLLKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFR 1902
            F S+C+ + ISE         +I + +  CP  + QA+ + S     S N  +RF   +  K  C+ Q T +  E     CCY+ T   L+ G          +G    K SP        L NLL H+  D++P   CC  ++ D  C + + +R + N  ++   +     GDPH +      KYT+  KG+F L+ T +    LQ R     +   S+  A+V +
Sbjct:  714 FYSKCKAWSISEPATIGEALLSIVRSEVPCPPTIDQARTVNSGLIQNSNNKLVRFLHPNADK--CYHQRTITRTEGSSNECCYD-TNGQLIIG--------PTSGGSVDKASPIGSDSSSYLTNLLNHHREDILPYIFCCKGAEKD--CGKYYTRRPSDNGTAYVPPIPAWTIGDPHIITLDQY-KYTFNGKGEFILIETDDESFTLQGRMIETQNGTASVFSALVAK 927
[Close]
BLAST of SMED30010045 vs. Ensembl Cavefish
Match: SUSD2 (sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667])

HSP 1 Score: 56.6102 bits (135), Expect = 1.491e-7
Identity = 74/312 (23.72%), Postives = 131/312 (41.99%), Query Frame = 1 
Query: 1477 GVTCCYNKTTNALLYGQDYYLRNNSIAGS-----YKWKFSPLNNL-----LKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIF--QNSIKTK-LDIYIKIDESYRIYFEIERYF--YSKGNLEYIN--LKAHFSNNMKDIISGGLFGKV-----DNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLF 2343
            G  CCY+ T   +L G       +SI GS     + W   P         L H+ YD+I    CC  SDN   C   +  R + + ++++     +  GDPHF+ F  ++ YT+  KG++ L+ + N  L +Q R  + T +  S + A        R+    +    +++    +  T+++  ++ L   ++ VL F  Q+ I  K + ++  + ++  + F         S+G +  +   L   F+N+       GL GK+     D+   S G   P S  P       + +F F   W  +   SLF
Sbjct:  361 GQQCCYDHTGAQVLTG-------DSIGGSTPDRGHDWGAPPYLRPPRIPGLSHWKYDVITFYYCCLWSDN---CDYYFTHRPSSDCRTYQPPKAASVLGDPHFITFDGTA-YTFNGKGEYVLLHSENYNLTVQGRTENMTSENGSSIMA-------TRLCSVAARERDSDV--MEVRLTDRLDHLEVL--MNQRVLSFSEQSWIDLKGVFVFSAVPQNVTVMFPSGAGLEIRSRGGVMTLTVLLPLEFNNHTL-----GLLGKMNDDPSDDLTSSNGATLPASASP-------QDIFTFGASWAISNQSSLF 638
[Close]
BLAST of SMED30010045 vs. Ensembl Medaka
Match: ENSORLT00000010287.2 (sushi domain-containing protein 2 [Source:NCBI gene;Acc:101166401])

HSP 1 Score: 56.225 bits (134), Expect = 1.781e-7
Identity = 40/135 (29.63%), Postives = 62/135 (45.93%), Query Frame = 1 
Query: 1477 GVTCCYNKTTNALLYGQDYYLRNNSIAGS-----YKWKFSPLNNL-----LKHYLYDLIPITECC-SSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQAR 1848
            G  CCY+KT   +L         +SI GS     + W   P         L H++YD++    CC  SDN   C   +  R + + + ++       FGDPHF+ F   S Y++  KG++ LV + +  L +Q R
Sbjct:  351 GQQCCYDKTGAQVLTA-------DSIGGSTPDRAHDWGSPPFRKPPRIPGLSHWVYDVLSFYYCCLWSDN---CHYYFKHRPSSDCRRYQSPNSAVVFGDPHFITFDGVS-YSFNGKGEYTLVTSADKQLTIQGR 474
[Close]
BLAST of SMED30010045 vs. Planmine SMEST
Match: SMESG000058295.1 (SMESG000058295.1)

HSP 1 Score: 1959.88 bits (5076), Expect = 0.000e+0
Identity = 977/977 (100.00%), Postives = 977/977 (100.00%), Query Frame = 1 
Query:   76 KDDKFSPISTETFQNYIGNYQYKSIKLINKDIIFYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEVQNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTKDSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIAGDLCIQDKNISAQNPTVLVYAAVGATXXXXXXXXXXXXXXXXQRRRRSTKIVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK 3006
            KDDKFSPISTETFQNYIGNYQYKSIKLINKDIIFYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEVQNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTKDSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIAGDLCIQDKNISAQNPTVLVYAAVGATILVLLVLVFVILFFLVQRRRRSTKIVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK
Sbjct:   18 KDDKFSPISTETFQNYIGNYQYKSIKLINKDIIFYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEVQNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTKDSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIAGDLCIQDKNISAQNPTVLVYAAVGATILVLLVLVFVILFFLVQRRRRSTKIVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK 994
[Close]
BLAST of SMED30010045 vs. Planmine SMEST
Match: SMESG000058295.1 (SMESG000058295.1)

HSP 1 Score: 1958.73 bits (5073), Expect = 0.000e+0
Identity = 977/977 (100.00%), Postives = 977/977 (100.00%), Query Frame = 1 
Query:   76 KDDKFSPISTETFQNYIGNYQYKSIKLINKDIIFYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEVQNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTKDSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIAGDLCIQDKNISAQNPTVLVYAAVGATXXXXXXXXXXXXXXXXQRRRRSTKIVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK 3006
            KDDKFSPISTETFQNYIGNYQYKSIKLINKDIIFYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEVQNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTKDSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIAGDLCIQDKNISAQNPTVLVYAAVGATILVLLVLVFVILFFLVQRRRRSTKIVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK
Sbjct:   26 KDDKFSPISTETFQNYIGNYQYKSIKLINKDIIFYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEVQNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTKDSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQSISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNLRIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFDEISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKNNIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNELRWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGLYSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYGQDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSESWDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRNNILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILAATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFYSKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITETNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHMCEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVRYSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIAGDLCIQDKNISAQNPTVLVYAAVGATILVLLVLVFVILFFLVQRRRRSTKIVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK 1002
The following BLAST results are available for this feature:
BLAST of SMED30010045 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SUSD26.335e-931.54sushi domain containing 2 [Source:NCBI gene;Acc:10... [more]
SUSD27.160e-931.54sushi domain containing 2 [Source:NCBI gene;Acc:10... [more]
SUSD29.853e-931.54sushi domain containing 2 [Source:NCBI gene;Acc:10... [more]
SUSD29.962e-931.54sushi domain containing 2 [Source:NCBI gene;Acc:10... [more]
SUSD21.018e-831.54sushi domain containing 2 [Source:NCBI gene;Acc:10... [more]
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BLAST of SMED30010045 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 1
Match NameE-valueIdentityDescription
sp|H9JIQ1|MESH_BOMMO1.269e-821.74Protein mesh OS=Bombyx mori OX=7091 PE=1 SV=1[more]
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BLAST of SMED30010045 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
V4CSU32.025e-822.96Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A210QNJ11.207e-720.82Uncharacterized protein OS=Mizuhopecten yessoensis... [more]
R7VEB82.032e-730.07Uncharacterized protein OS=Capitella teleta OX=283... [more]
A0A0B7AYM46.035e-721.39Uncharacterized protein (Fragment) OS=Arion vulgar... [more]
A0A1X7UKS66.970e-727.19Uncharacterized protein OS=Amphimedon queenslandic... [more]
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BLAST of SMED30010045 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
SUSD21.491e-723.72sushi domain containing 2 [Source:HGNC Symbol;Acc:... [more]
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BLAST of SMED30010045 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30010045 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ENSORLT00000010287.21.781e-729.63sushi domain-containing protein 2 [Source:NCBI gen... [more]
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BLAST of SMED30010045 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000058295.10.000e+0100.00SMESG000058295.1[more]
SMESG000058295.10.000e+0100.00SMESG000058295.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30010045 ID=SMED30010045|Name=SMED30010045|organism=Schmidtea mediterranea sexual|type=transcript|length=3066bp
TATATAAATCTTATATGACTTCAGATGATTATATTTATATTTTTTTCTAT
TGGAATTATAAATTCTCAAATAATAAAAGATGATAAATTTTCGCCCATTT
CAACTGAAACCTTTCAAAACTATATTGGAAATTACCAATACAAATCTATT
AAACTAATTAACAAAGACATTATATTTTATTCGGAAAGCTGCGATCCGTG
TTTTTTAGGGGTCTACCCATATGTCATAGACCTACCAAGTATACGAAGAT
CAAGCTTTAACTTTCCTAGATTCATAGTAGATTCTCAAGACAATAAACAG
AAAAAAGAGTTTATTGACGAGGTGCAGAACTCCATTCAGAGTCGGGATTT
CACTAATAATACCCCATTTATATTAGAAGCCGGAATTTCATACATTGAAA
ATCAATGCCAAGCAATTATTGTATGGGATTCAAAAAGGACATTTTTGATT
CTAAATGAGCCAAATAAGACAAAAGATAGCTTAAACATTACTCTTGGTAA
AGGCTTGAATCAATTTGACTCTTTTAGAAACATGCCTCCGTTGTATTTCC
AAAGTCAACGACTTATATTCGAAATTTCTACAAGTATACTTATTAAAATA
GGATGTCAGGATATTTCTCAAAGTATCTCAAATGAAACTACGTTACCTCT
TTTCCTCAGCTCATCTCGAATGCATAATCTTGGAGGTGAAAAGGTCTACA
TTCAAGGTCCGTGTTACAACAAATTGGATCCTTTTCCAAAATTGAAAATA
GAAAGTCTAAACAATCCAAATTTGAGAATCGCAGACATAGCCATTTATTT
TGATAATCTGACAAATTCATTTGCTCTCATTTCTCCCATCATTTGGTATA
CAGGATTATATCAGTTTCAACTCTCCTACAAAAATTTCAGCTTCACTTCC
TCAGTGGAAATTTATTCTTTCGACGAGATAAGCAATCCTTTTGAGATAAT
TGACATAAATGAAATGAAAAATTGGTATTACAAAAGAGACAATATAAGAA
TTTCTATTCCAAACATTGAATCTTGTGTAAAGTTTTCGTTTTATGCTGTC
GATTTAGCAATGATTGATAAAAACAACATACCTATTAGTCTGGTAAATAA
TGAGATAAGAATAGTTAAAAAATCGCAAGAAAATCAAATATTGTTGGTAG
ACCTCCTAAGCCCTAAAATAAATGTTTCATCACATGTAGGATTTCTGGCT
TGTTCGTCAGCATCGAATGAACTCAGATGGTCAAATTCATTTAGTCTAAT
GTGCTTGCACAAATATGATTCTAACAAATTGCTTTTTAACTCTCAATGTC
AAAATTATATATCAGAAACAATAACCAAAAAAGATTATTTCTGTCCAGAA
AATTTACTCCAGGCTAAAGGATTATATTCAACGTTCAGAAGTACCTCAAT
AAACCTTAGATTTCAACCAGATGATTTTCAAAAATATGTCTGCTTTATTC
AAATGACATTTTCTGAAAATGAAAATGGAGTCACCTGTTGTTACAATAAA
ACTACGAACGCATTACTTTATGGCCAGGATTATTATTTGCGGAATAATTC
AATTGCTGGAAGTTACAAATGGAAATTTTCACCTTTAAACAATTTATTGA
AGCATTATTTGTATGATCTAATACCGATAACAGAATGCTGCTCCTCTGAT
AACGACACTTTGTGCTCTGAATCATGGGACAAACGTCACGCCATCAACAT
AAAGTCCTTTGAAGAAGATTTGAAAGGGAATGCTTTTGGTGATCCTCATT
TCTTACCGTTTAAATCATCTTCAAAATACACGTATCTTGCTAAAGGAGAC
TTCCCTTTAGTTATTACTCGTAACAATATCTTAGACTTACAAGCCCGATT
CTATCACGAAACAGATAAGCAAAACTCTTTATTAAAAGCCATAGTCTTTC
GTATTCCATCAATTCGTATATCAATTACTCTTTCTACTAACAATAGAACG
AACATTCCATGGAAAATACTGGCTGCAACTAACAAAATATTTTCCATCGA
TGCTTTGCCTTTTTATCATGAAAATGTTTTAATTTTTCAAAATTCGATTA
AAACAAAACTTGATATTTATATAAAGATTGATGAAAGTTATAGAATTTAT
TTTGAGATTGAAAGGTATTTTTACTCTAAAGGAAATCTTGAATATATAAA
CTTGAAAGCTCATTTTTCGAATAACATGAAGGATATTATAAGCGGAGGAT
TATTTGGAAAAGTTGATAATCAGGCCGAAAGCACTGGGTTATATCCTCCA
AATTCTGAACAACCGATTACAGAAACGAACGATGATAAAAAAATGTTTGA
TTTTTGCCAGAAATGGAAATTTAATGAAAATGATAGTTTATTTTTTGAAA
AGATTGACATACCTAACGTGGCATTTCAAGAGATTAGTTCTTCGACTTTT
GACGAATGTGATAAAATACATATGTGTGAAATAGACAAGACAAATTTTAT
GAATGAAAATATTCATTTGACAACAAAAATAAATTATGAATATCGCATGA
CAATTGAAAAAGAATGGAATAAATCGCTATTGGAAAAAAAGTTTTGTGGT
CATCCTCCAATAAAGAAAGTTCGATATAGTTCTGAAAATTTTCATGAAAA
TTCACAAATATCAATTGTTGGCTGCATCAATCCGAAAAAACAGATGGATT
CTGGAAATTATACATTAATTTGCGAAAAGAAATCAAATTCTATGTACGGT
TGGAAAGAGGAACCAAAAATCGCAGGTGATTTGTGCATTCAGGATAAAAA
TATAAGTGCTCAAAATCCAACAGTTTTAGTTTACGCGGCGGTTGGTGCTA
CAATCCTAGTACTATTGGTACTAGTATTTGTAATCCTTTTTTTCCTCGTT
CAAAGAAGACGAAGATCAACAAAAATAGTAAAATCTAATTCACATGTAGA
ATCCAGTACTAGGAGTGAAATTCCTTTAGAAGATTTTTACGATGTCGTCA
TAAAGCCTGAAAATGAATATTGTACGTATGCAGAAATACAAAAGGATTTT
AAAAAATAAAATAATTATCTAACTTCAGATCATATTGAAAAAGAAATTCC
TCATTTTGAAAATAAA
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protein sequence of SMED30010045-orf-1

>SMED30010045-orf-1 ID=SMED30010045-orf-1|Name=SMED30010045-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=995bp
MIIFIFFSIGIINSQIIKDDKFSPISTETFQNYIGNYQYKSIKLINKDII
FYSESCDPCFLGVYPYVIDLPSIRRSSFNFPRFIVDSQDNKQKKEFIDEV
QNSIQSRDFTNNTPFILEAGISYIENQCQAIIVWDSKRTFLILNEPNKTK
DSLNITLGKGLNQFDSFRNMPPLYFQSQRLIFEISTSILIKIGCQDISQS
ISNETTLPLFLSSSRMHNLGGEKVYIQGPCYNKLDPFPKLKIESLNNPNL
RIADIAIYFDNLTNSFALISPIIWYTGLYQFQLSYKNFSFTSSVEIYSFD
EISNPFEIIDINEMKNWYYKRDNIRISIPNIESCVKFSFYAVDLAMIDKN
NIPISLVNNEIRIVKKSQENQILLVDLLSPKINVSSHVGFLACSSASNEL
RWSNSFSLMCLHKYDSNKLLFNSQCQNYISETITKKDYFCPENLLQAKGL
YSTFRSTSINLRFQPDDFQKYVCFIQMTFSENENGVTCCYNKTTNALLYG
QDYYLRNNSIAGSYKWKFSPLNNLLKHYLYDLIPITECCSSDNDTLCSES
WDKRHAINIKSFEEDLKGNAFGDPHFLPFKSSSKYTYLAKGDFPLVITRN
NILDLQARFYHETDKQNSLLKAIVFRIPSIRISITLSTNNRTNIPWKILA
ATNKIFSIDALPFYHENVLIFQNSIKTKLDIYIKIDESYRIYFEIERYFY
SKGNLEYINLKAHFSNNMKDIISGGLFGKVDNQAESTGLYPPNSEQPITE
TNDDKKMFDFCQKWKFNENDSLFFEKIDIPNVAFQEISSSTFDECDKIHM
CEIDKTNFMNENIHLTTKINYEYRMTIEKEWNKSLLEKKFCGHPPIKKVR
YSSENFHENSQISIVGCINPKKQMDSGNYTLICEKKSNSMYGWKEEPKIA
GDLCIQDKNISAQNPTVLVYAAVGATILVLLVLVFVILFFLVQRRRRSTK
IVKSNSHVESSTRSEIPLEDFYDVVIKPENEYCTYAEIQKDFKK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000070intestinal phagocyte
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR005533AMOP_dom
Vocabulary: molecular function
TermDefinition
GO:0005044scavenger receptor activity
GO:0030247polysaccharide binding
Vocabulary: biological process
TermDefinition
GO:0006898receptor-mediated endocytosis
GO:0006955immune response
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005533AMOP domainPROSITEPS50856AMOPcoord: 404..556
score: 10.027
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.522
NoneNo IPR availableTMHMMTMhelixcoord: 922..944