Neur_chan_LBD domain-containing protein

Overview


Name	Neur_chan_LBD domain-containing protein
Smed ID	SMED30010012
Length (bp)	1172

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Neur_chan_LBD domain-containing protein (SMED30010012) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Neur_chan_LBD domain-containing protein (SMED30010012) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30010012

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
neuron	SMED30010012	h1SMcG0010053	dd_21541	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30010012	h1SMcG0010053	dd_Smed_v4_21541_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30010012	h1SMcG0010053	dd_Smed_v4_21541_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
non-ciliated neuron	SMED30010012	h1SMcG0010053	dd_Smed_v4_21541_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRB3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:HGNC Symbol;Acc:HGNC:4083])

HSP 1 Score: 64.6994 bits (156), Expect = 3.868e-11
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:   40 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVS-RNVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 235

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRB3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:HGNC Symbol;Acc:HGNC:4083])

HSP 1 Score: 63.929 bits (154), Expect = 1.546e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:   60 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 255

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRB3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:HGNC Symbol;Acc:HGNC:4083])

HSP 1 Score: 63.929 bits (154), Expect = 1.546e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:   60 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 255

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRB3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:HGNC Symbol;Acc:HGNC:4083])

HSP 1 Score: 63.929 bits (154), Expect = 1.546e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:   60 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 255

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Match: GABRB3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:HGNC Symbol;Acc:HGNC:4083])

HSP 1 Score: 63.929 bits (154), Expect = 1.546e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:   60 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 255

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: pHCl-2 (gene:FBgn0039840 transcript:FBtr0347502)

HSP 1 Score: 65.0846 bits (157), Expect = 3.836e-11
Identity = 65/270 (24.07%), Postives = 125/270 (46.30%), Query Frame = 1

Query:  184 SKRIPKI*KEEDLKNLWNPKLFVENLYKENQNTTS----LEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNI-----HSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPIL 963
            ++R P + + E  K LW P +F+ N        TS    L   +P+G     V+   R+  T +  +  ++FPFD Q    T+ S      +  L  +TD + ++   +++  E+N+     +  + VS  + +++ ++      II FT   +R   Y++I++ L S+M+  +++ SF +    T  R  L    LL+ +T  ++   NL K+ Y+T  +   L   IF+   L  +  + +I+  N +LQ  K      ++   +P L
Sbjct:  147 NRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGT----VLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETD-NPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYS-IISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHL 410

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: pHCl-2 (gene:FBgn0039840 transcript:FBtr0085766)

HSP 1 Score: 65.0846 bits (157), Expect = 3.836e-11
Identity = 65/270 (24.07%), Postives = 125/270 (46.30%), Query Frame = 1

Query:  184 SKRIPKI*KEEDLKNLWNPKLFVENLYKENQNTTS----LEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNI-----HSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPIL 963
            ++R P + + E  K LW P +F+ N        TS    L   +P+G     V+   R+  T +  +  ++FPFD Q    T+ S      +  L  +TD + ++   +++  E+N+     +  + VS  + +++ ++      II FT   +R   Y++I++ L S+M+  +++ SF +    T  R  L    LL+ +T  ++   NL K+ Y+T  +   L   IF+   L  +  + +I+  N +LQ  K      ++   +P L
Sbjct:  147 NRRQPIMGESELKKMLWVPHIFLTNEQASTVLGTSAKDELTSIYPNGT----VLTSTRLQATLYCWMNFQKFPFDEQKCKTTLESWMYNTTLVQLHWETD-NPVSFDKQLQLTEYNLIGSLYNESIRVSNESYMSHGSLEGNYS-IISFTVLLTREVGYYVIDYFLPSIMIVTISWVSFWLQADQTPARTTLGCTTLLSFITLSLSQENNLMKVSYVTMSEVWFLVCTIFIFGSLVEFAFVNTIWRRNNDLQLKKRTTKYIVKSTFVPHL 410

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: CG6927 (gene:FBgn0029733 transcript:FBtr0070721)

HSP 1 Score: 60.8474 bits (146), Expect = 1.035e-9
Identity = 69/274 (25.18%), Postives = 121/274 (44.16%), Query Frame = 1

Query:  187 KRIPKI*KEEDLKN-LWNPKLFVEN-------LYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC--SIEEVDLLESKTDLS---TLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILL 966
            KR   I  EE L+N LW P +F+ N          E    TS+    PDG     VI   RI  T +  L LK+FPFD Q  S  + S    + E V   E K  ++    L+++  V  + W+  + +      +      G      + FT   +R   ++L+++ L S+++  +++ SF +       R+ L    LLT +T   A  + LPK+ Y+   +   LG  IF+   +  +  + +I+   +++   K+ +   ++  + P LL
Sbjct:  111 KRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSIS---PDGT----VIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSS--LSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWRRKKSVPVKKLNSKHILKSTLSPNLL 375

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: HisCl1 (gene:FBgn0037950 transcript:FBtr0082470)

HSP 1 Score: 47.7506 bits (112), Expect = 1.313e-8
Identity = 49/220 (22.27%), Postives = 98/220 (44.55%), Query Frame = 1

Query:  220 LKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRA-----SRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCL 858
            L ++W P  F +N  K   +  S+  ++        ++   ++       ++ + +P D Q  S+ + S   ++E++  + + TD   L V++E+E  + +I       +    T+C I         FTC A      RR  Y L +  + S ++ ++++ SF + P     R+ L +  LLT  T      Q+LP + Y+  +D  +   ++FV + L
Sbjct:  134 LHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTD--PLVVNTEIELPQLDI-------SNNYTTDCTIEYSTGN---FTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSL 341

HSP 2 Score: 30.4166 bits (67), Expect = 1.313e-8
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 2

Query:   74 VKICQVDTVNE---VYYADIFLQSKWREPLL 157
            V +  +D++NE    Y  DIFL   WR+P L
Sbjct:   86 VTVLSLDSINEESMTYVTDIFLAQSWRDPRL 116

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Match: HisCl1 (gene:FBgn0037950 transcript:FBtr0082471)

HSP 1 Score: 47.7506 bits (112), Expect = 1.367e-8
Identity = 49/220 (22.27%), Postives = 98/220 (44.55%), Query Frame = 1

Query:  220 LKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRA-----SRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCL 858
            L ++W P  F +N  K   +  S+  ++        ++   ++       ++ + +P D Q  S+ + S   ++E++  + + TD   L V++E+E  + +I       +    T+C I         FTC A      RR  Y L +  + S ++ ++++ SF + P     R+ L +  LLT  T      Q+LP + Y+  +D  +   ++FV + L
Sbjct:  134 LHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVEDLVFIWNMTD--PLVVNTEIELPQLDI-------SNNYTTDCTIEYSTGN---FTCLAIVFNLRRRLGYHLFHTYIPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSL 341

HSP 2 Score: 30.4166 bits (67), Expect = 1.367e-8
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 2

Query:   74 VKICQVDTVNE---VYYADIFLQSKWREPLL 157
            V +  +D++NE    Y  DIFL   WR+P L
Sbjct:   86 VTVLSLDSINEESMTYVTDIFLAQSWRDPRL 116

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:ZFIN;Acc:ZDB-GENE-101102-2])

HSP 1 Score: 60.077 bits (144), Expect = 2.104e-9
Identity = 51/214 (23.83%), Postives = 103/214 (48.13%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      + +   VS  +E  +++I  +  VS   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGETAVTGVS-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 348

[Close]

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      + +   VS  +E  +++I  +  VS   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGETAVTGVS-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 348

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:ZFIN;Acc:ZDB-GENE-101102-2])

HSP 1 Score: 60.077 bits (144), Expect = 2.241e-9
Identity = 51/214 (23.83%), Postives = 103/214 (48.13%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      + +   VS  +E  +++I  +  VS   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  179 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGETAVTGVS-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 382

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrb4 (gamma-aminobutyric acid type A receptor beta4 subunit [Source:ZFIN;Acc:ZDB-GENE-070424-211])

HSP 1 Score: 59.3066 bits (142), Expect = 3.143e-9
Identity = 50/208 (24.04%), Postives = 97/208 (46.63%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQKSKI 921
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + +++       D    N  + V+  E    S VE+  ++       G   +  + F  R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  +FF     Q+ KI
Sbjct:  146 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIVFFWQGGD----NAVTGVDKLELPQFSIVELRLVSREVRFTTGSYPRLSLSF--RIKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGVTTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYVFFGRGPQQQKKI 343

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Match: gabrb2a (gamma-aminobutyric acid type A receptor beta2 subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-8196])

HSP 1 Score: 58.5362 bits (140), Expect = 3.572e-9
Identity = 44/204 (21.57%), Postives = 96/204 (47.06%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQK 912
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  +  +S   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+
Sbjct:   77 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDGAVSGVE-RIELPQFSIVDYKLISK-NVVFSTGSYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQR 270

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000020814.1 (gamma-aminobutyric acid type A receptor theta subunit [Source:NCBI gene;Acc:100496398])

HSP 1 Score: 63.1586 bits (152), Expect = 2.685e-10
Identity = 49/211 (23.22%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIR 933
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   +I+++       + + +   S +E  ++ I     VS   V T  +  P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K  N R
Sbjct:  133 PDGT----VLYGLRITTTAACMMDLRRYPLDQQNCTLEIESYGYTIDDIKFFWQGGEEAAVTGVSALELPQFTIIETRLVSKNVVFTTGSY-PRLS----LSFRIKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGVTTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYVFFGRGPQQQKKLNER 334

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: ENSXETT00000020832.1 (gamma-aminobutyric acid type A receptor theta subunit [Source:NCBI gene;Acc:100496398])

HSP 1 Score: 63.1586 bits (152), Expect = 2.970e-10
Identity = 49/211 (23.22%), Postives = 98/211 (46.45%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIR 933
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   +I+++       + + +   S +E  ++ I     VS   V T  +  P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K  N R
Sbjct:  150 PDGT----VLYGLRITTTAACMMDLRRYPLDQQNCTLEIESYGYTIDDIKFFWQGGEEAAVTGVSALELPQFTIIETRLVSKNVVFTTGSY-PRLS----LSFRIKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGVTTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYVFFGRGPQQQKKLNER 351

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: dusp5 (dual specificity phosphatase 5 [Source:Xenbase;Acc:XB-GENE-957572])

HSP 1 Score: 59.6918 bits (143), Expect = 4.236e-9
Identity = 51/214 (23.83%), Postives = 101/214 (47.20%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   V    +  P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWLGGDNAVTGVE-RIELPQFSIMDHKLVSKNVVFATGSY-PRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKSAK 348

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: dusp5 (dual specificity phosphatase 5 [Source:Xenbase;Acc:XB-GENE-957572])

HSP 1 Score: 59.3066 bits (142), Expect = 4.362e-9
Identity = 51/214 (23.83%), Postives = 101/214 (47.20%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   V    +  P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  136 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWLGGDNAVTGVE-RIELPQFSIMDHKLVSKNVVFATGSY-PRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKSAK 339

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BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Match: gabrb2 (gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:NCBI gene;Acc:100125027])

HSP 1 Score: 58.9214 bits (141), Expect = 6.141e-9
Identity = 50/207 (24.15%), Postives = 99/207 (47.83%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + +++       +    N  + VE  E    S ++ + ++     + G   +  + F  R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV M L L +AL +  F  +  Q+ K
Sbjct:  144 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIGFYWRGGN----NAVTGVERLELPQFSIIDYNLLSRNVVFSTGSYPRLSLSFKLR--RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMAL-LEYALVNYIFFGRGPQRQK 339

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrb3 (gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 [Source:MGI Symbol;Acc:MGI:95621])

HSP 1 Score: 64.3142 bits (155), Expect = 9.490e-11
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 340

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrb3 (gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 [Source:MGI Symbol;Acc:MGI:95621])

HSP 1 Score: 63.929 bits (154), Expect = 1.313e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  167 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 362

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrb3 (gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 [Source:MGI Symbol;Acc:MGI:95621])

HSP 1 Score: 63.5438 bits (153), Expect = 1.470e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 340

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrb2 (gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 [Source:MGI Symbol;Acc:MGI:95620])

HSP 1 Score: 62.003 bits (149), Expect = 5.457e-10
Identity = 49/205 (23.90%), Postives = 104/205 (50.73%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQK 912
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V+ ++E  +++I  + ++ T  VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV M L L +AL +  F  +  Q+
Sbjct:  144 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVT-KIELPQFSIVDY-KLITKKVVFSTGSYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMAL-LEYALVNYIFFGRGPQR 337

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Match: Gabrb2 (gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 [Source:MGI Symbol;Acc:MGI:95620])

HSP 1 Score: 61.6178 bits (148), Expect = 6.508e-10
Identity = 49/205 (23.90%), Postives = 104/205 (50.73%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQK 912
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V+ ++E  +++I  + ++ T  VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV M L L +AL +  F  +  Q+
Sbjct:  144 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVT-KIELPQFSIVDY-KLITKKVVFSTGSYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMAL-LEYALVNYIFFGRGPQR 337

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BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P0C7B7|ELIC_DICCH (Cys-loop ligand-gated ion channel OS=Dickeya chrysanthemi OX=556 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.191e-10
Identity = 58/220 (26.36%), Postives = 93/220 (42.27%), Query Frame = 1

Query:  223 KNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCR--ASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHG-RLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAIL---GNIFVIMCLCL 864
              LW P L   N+           + FPDG+    VI   R  G+F   ++ + FPFD Q   + +    S     L  S   + T N+ +E   + W   +   +S +      ++ P        T R  A R   Y+L + IL    L L+   S++V    +   RLQ    ++LT V +    S  LP++PY T +D+ I+   G+IF  + L +
Sbjct:   69 NGLWVPALEFINVVGSPDTGNKRLMLFPDGR----VIYNARFLGSFSNDMDFRLFPFDRQQFVLELEP-FSYNNQQLRFSDIQVYTENIDNEEIDEWWIRKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFIL---PLGLIIAASWSVFWLESFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLII 280

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BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P63079|GBRB3_RAT (Gamma-aminobutyric acid receptor subunit beta-3 OS=Rattus norvegicus OX=10116 GN=Gabrb3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.638e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 340

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P63080|GBRB3_MOUSE (Gamma-aminobutyric acid receptor subunit beta-3 OS=Mus musculus OX=10090 GN=Gabrb3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.638e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 340

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P28472|GBRB3_HUMAN (Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens OX=9606 GN=GABRB3 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.589e-10
Identity = 48/206 (23.30%), Postives = 96/206 (46.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V   +E  +++I  H  VS   VV      P++      + R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVE-RIELPQFSIVEHRLVSR-NVVFATGAYPRLS----LSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 340

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Match: sp|P63138|GBRB2_RAT (Gamma-aminobutyric acid receptor subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Gabrb2 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.817e-9
Identity = 49/205 (23.90%), Postives = 104/205 (50.73%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFFLNQNLQK 912
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V+ ++E  +++I  + ++ T  VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV M L L +AL +  F  +  Q+
Sbjct:  144 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVT-KIELPQFSIVDY-KLITKKVVFSTGSYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMAL-LEYALVNYIFFGRGPQR 337

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A4E0RSR9 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_005714 PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.345e-72
Identity = 131/290 (45.17%), Postives = 186/290 (64.14%), Query Frame = 1

Query:  229 LWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQR--IIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKE 1092
             WNP+L ++N   E     S EV F +    AY++EKRRI G FHETLELK FPFD QDLS+TV+ + S++EV L+ S T++S ++     +SQEW I  HV+V  M + T  + G   +R   +VFT R++RR  YF++N +LIS +LCLL+FC F+ VP + + RLQ  +++LLTTVTFK A SQNLPKI YLTYLDK +L N F+++ L +WH +            +    +   E +++  LL+SY +   +FGL +Y DAG RRRLM+ KD+EFG+     ++E
Sbjct:   74 FWNPRLLLDNAQGEPIEIVSHEVEFVEPTFEAYLVEKRRIKGVFHETLELKHFPFDVQDLSVTVTCDRSVDEVLLVPSPTEVSQVDRRGAADSQEWKIFHHVDVERMEIQTAYSPGTSKRRHPGLVFTSRSARRSGYFMVNMVLISCVLCLLSFCIFS-VPVDGN-RLQQALLLLLTTVTFKFAASQNLPKISYLTYLDKVVLANFFMLVILTVWHTIARSL-------SASYPKLLDNEKYVVYTLLSSYCLGAVIFGLTVYLDAGSRRRLMQRKDVEFGQLKTRIERE 354

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A3R7CFX9 (Neuronal acetylcholine receptor subunit alpha-7 OS=Clonorchis sinensis OX=79923 GN=CHRNA7 PE=4 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.363e-72
Identity = 130/281 (46.26%), Postives = 186/281 (66.19%), Query Frame = 1

Query:  226 NLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQR--IIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEF 1062
              WNP+L ++N   E     S EV F +    AY++EKRRI G FHETLELK FPFDCQDLS+TV+ + ++EEV+L+ S T++S ++     +SQEW I  HV++++M + T  + G   +R   +VFT R++RR  YF++N  LIS +L LL+F  F+ VP + + RLQL +++LLTTVTFK A SQNLPKI YLTYLDK +L N F+++ L +WH +    F       +K   ++  E +++  LL++Y +   VFGL +Y DAG RRRLMK KD++F
Sbjct:  114 EFWNPRLLLDNAQGEPIEIVSHEVEFVEPDFEAYLVEKRRIKGVFHETLELKHFPFDCQDLSVTVTCDRTVEEVELVPSPTEVSQVDRRCAADSQEWKIFHHVDIASMEIQTAYSPGTCKRRHPGLVFTSRSARRAGYFMVNMALISCVLSLLSFSVFS-VPVDGN-RLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKMVLANFFMLVILTVWHTIARSVF-------AKYPGLKDKEQYVVYTLLSAYCLGAVVFGLTVYLDAGSRRRLMKSKDMDF 385

HSP 2 Score: 62.003 bits (149), Expect = 1.363e-72
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 2

Query:   53 VEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDNSLDS 175
            VE+  +FVKI QVDTVNE Y ADIFLQ++WREPLLD + ++
Sbjct:   39 VELMLIFVKIGQVDTVNERYQADIFLQARWREPLLDATWNT 79

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A075A8W6 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_08254 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.537e-70
Identity = 130/279 (46.59%), Postives = 185/279 (66.31%), Query Frame = 1

Query:  232 WNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQR--IIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEF 1062
            WNP+L ++N   E     S EV F +    AY++EKRRI G FHETLELK FPFDCQDLS+TV+ + ++EEV+L+ S T++S ++     +SQEW I  HV++++M + T  + G   +R   +VFT R++RR  YF++N  LIS +L LL+F  F+ VP +   RLQL +++LLTTVTFK A SQNLPKI YLTYLDK +L N F+++ L +WH +    F       +K   ++  E +++  LL++Y +   VFGL +Y DAG RRRLMK KD++F
Sbjct:  316 WNPRLLLDNAQGEPIEIVSHEVEFVEPDFEAYLVEKRRIKGIFHETLELKHFPFDCQDLSVTVTCDRTVEEVELVPSPTEVSQVDRRCAADSQEWKIFHHVDIASMEIQTAYSPGTCKRRHPGLVFTSRSARRAGYFMVNMALISCVLSLLSFSVFS-VPVDG-NRLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKMVLANFFMLVILTVWHTIARSVF-------AKYPGLKDKEQYVVYTLLSAYCLGAVVFGLTVYLDAGSRRRLMKSKDMDF 585

HSP 2 Score: 62.7734 bits (151), Expect = 6.712e-7
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2

Query:   53 VEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLD 160
            VE+  +FVKI QVDTVNE Y ADIFLQ++WREPLLD
Sbjct:  239 VELMLIFVKIGQVDTVNERYQADIFLQARWREPLLD 274

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A2H1C9P4 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_08727 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.175e-67
Identity = 131/309 (42.39%), Postives = 186/309 (60.19%), Query Frame = 1

Query:  229 LWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVE-------------------VSTMTVVTNCNIGPQMQR--IIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKE 1092
             WNP+L ++N   E     S EV F +    AY++EKRRI G FHETLELK FPFD QDLS+TV+ + S++EV L+ S T++S ++     +SQEW I  HV+                   V  M + T  + G   +R   +VFT R++RR  YF++N +LIS +LCLL+FC F+ VP + + RLQ  +++LLTTVTFK A SQNLPKI YLTYLDK +L N F+++ L +WH +            +    +   E +++  LL+SY +   +FGL +Y DAG RRRLM+ KD+EFG+     ++E
Sbjct:   74 FWNPRLLLDNAQGEPIEIVSHEVEFVEPTFEAYLVEKRRIKGVFHETLELKHFPFDVQDLSVTVTCDRSVDEVLLVPSPTEVSQVDRRGAADSQEWKIFHHVDFFRCLPTFPPRPPPRPLAQVERMEIQTAYSPGTSKRRHPGLVFTSRSARRSGYFMVNMVLISCVLCLLSFCIFS-VPVDGN-RLQQALLLLLTTVTFKFAASQNLPKISYLTYLDKVVLANFFMLVILTVWHTIARSL-------SASYPKLLDNEKYVVYTLLSSYCLGAVIFGLTVYLDAGSRRRLMQRKDVEFGQLKTRIERE 373

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Match: A0A5K4FCR6 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.850e-67
Identity = 131/290 (45.17%), Postives = 192/290 (66.21%), Query Frame = 1

Query:  229 LWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVT--NCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKE 1092
             WNP+L ++N   E     S EV F +    AY++EKRRI G FHETLEL+ FPFDCQDLS+T++ + + +EV+L+ S T++S ++V    +SQEW I  HV++ ++ + T  + +   +    +VFT R++RR  YFL+N ILIS +LCLL+F +F+ VP N   RLQL +++LLTTVTFK A SQNLPKI YLTYLDK +L N F+++ L +WHA+       + +  SK + + + E +++  LL+ Y +   +FGL +Y DAG RRRLMK KD+EF +  +  + E
Sbjct:  354 FWNPRLLIDNAEGEPIEIISHEVEFIEPDFEAYLVEKRRIKGIFHETLELRHFPFDCQDLSVTITCDRTTDEVELVASPTEVSQVDVRCAADSQEWKIFHHVDIKSIEIQTGYSPSTSKRHHPGLVFTSRSARRSGYFLVNMILISCVLCLLSFSAFS-VPAN-ENRLQLSLLLLLTTVTFKFAASQNLPKISYLTYLDKVVLVNFFMLVILTVWHAIA------RAVSASKPKFL-EYEHYVMYSLLSCYCIGSVLFGLTVYLDAGSRRRLMKRKDIEFNQYKQQIEAE 634

HSP 2 Score: 60.8474 bits (146), Expect = 3.113e-6
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 2

Query:   53 VEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLD 160
            VE+  +FVK+ QVDTVNE Y ADIFLQ++WREPLLD
Sbjct:  276 VELVLIFVKVGQVDTVNERYQADIFLQARWREPLLD 311

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:NCBI gene;Acc:103041149])

HSP 1 Score: 61.6178 bits (148), Expect = 5.272e-10
Identity = 52/214 (24.30%), Postives = 103/214 (48.13%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   VS  +E  +++I  +  VS   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  166 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGDNAVTGVS-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 369

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:NCBI gene;Acc:103041149])

HSP 1 Score: 61.2326 bits (147), Expect = 8.295e-10
Identity = 52/214 (24.30%), Postives = 103/214 (48.13%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   VS  +E  +++I  +  VS   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGDNAVTGVS-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 348

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:NCBI gene;Acc:103041149])

HSP 1 Score: 60.8474 bits (146), Expect = 9.671e-10
Identity = 52/214 (24.30%), Postives = 103/214 (48.13%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   VS  +E  +++I  +  VS   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  166 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGDNAVTGVS-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 369

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: GABRB2 (gamma-aminobutyric acid receptor subunit beta-2 [Source:NCBI gene;Acc:103038806])

HSP 1 Score: 58.151 bits (139), Expect = 7.386e-9
Identity = 44/204 (21.57%), Postives = 97/204 (47.55%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQK 912
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      + +   V   +E  +++I  +  +S   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +AL +  F  +  Q+
Sbjct:  146 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGNHAVTGVE-RIELPQFSIVDYKLISK-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYALVNYIFFGRGPQR 339

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Match: GABRB2 (gamma-aminobutyric acid receptor subunit beta-2 [Source:NCBI gene;Acc:103038806])

HSP 1 Score: 57.7658 bits (138), Expect = 9.663e-9
Identity = 44/204 (21.57%), Postives = 97/204 (47.55%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQK 912
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      + +   V   +E  +++I  +  +S   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +AL +  F  +  Q+
Sbjct:  146 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGNHAVTGVE-RIELPQFSIVDYKLISK-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYALVNYIFFGRGPQR 339

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:ZFIN;Acc:ZDB-GENE-101102-2])

HSP 1 Score: 56.225 bits (134), Expect = 4.339e-9
Identity = 41/185 (22.16%), Postives = 88/185 (47.57%), Query Frame = 1

Query:  370 LELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNI-FVIMCLCLWHALTSIFFLNQNLQKSK 918
            ++L+++P D    ++ + S   + E++       D +   V  E++  ++ I  H +VS      N          +  + R  R   YF++   + ++++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G   FV + L  + A+  +FF  +  Q++K
Sbjct:    2 MDLRRYPLDEPFCTLEIESYGYTTEDIKFYWRGGDTAITGVG-EIKLPQFTIVKHNQVSR-----NVQFATGSYPRLSLSFRLKRNIGYFILQTYMPTILITILSWVSFWINYDASAARVALGVTTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFCFVFLALLEYAAVNYLFF-GRGPQRAK 179

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:ZFIN;Acc:ZDB-GENE-101102-2])

HSP 1 Score: 53.1434 bits (126), Expect = 3.567e-8
Identity = 38/162 (23.46%), Postives = 76/162 (46.91%), Query Frame = 1

Query:  433 SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            +++++       D +   VS E+E  +++I     VST+ V    +  P++      + R  R   YF++   + S ++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +AL +  F  +  Q  K
Sbjct:    3 TMDDIGFYWRGGDAAVTGVS-EIELPQFSIMEFRLVSTLVVFATGSY-PRLS----LSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFCFVFLALLEYALVNYIFFGRGPQLQK 158

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO32790 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SU26])

HSP 1 Score: 101.293 bits (251), Expect = 7.203e-24
Identity = 72/233 (30.90%), Postives = 115/233 (49.36%), Query Frame = 1

Query:  184 SKRIPKI*--KEEDLK--NLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVF--TCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCL 864
            S R PK+   K E++K  N W+PK+   N    ++      +Y+ +        E  +I GTF E   L+QFP D Q+LSI +SS+ S   V   +       L   +    ++W ++ HV   T T      +GP  +   V+  T    RR  ++  N  ++  +L  L+F SFA+ P  T  RL + +++LL +V +K   S +LP+  YLT+LDK  LGN+  I  + +
Sbjct:   46 SWREPKLAGKKNEEVKWDNEWSPKISFSNSLLLDRVYKGRRLYYEENSTVPLAQEVYKIRGTFKEQFSLEQFPVDLQELSIIISSDWSDRTVTFEKDMAKPDYLRQQTFSSPRDWVLYPHVHTDTATQ-EGEGLGPNDRSYPVYIITAHVRRRAVHYFWNTAVVMSVLTALSFASFAIPPQQTADRLTVTLLLLLISVAYKFVTSLHLPRTSYLTFLDKYQLGNLLFISFIAV 277

HSP 2 Score: 26.9498 bits (58), Expect = 7.203e-24
Identity = 10/39 (25.64%), Postives = 23/39 (58.97%), Query Frame = 2

Query:   41 EQIPVEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLL 157
            +++ V IRC    +  +D + + +  ++++ + WREP L
Sbjct:   14 DKVTVLIRCGISFLGDIDVIRQQFTCELWMTASWREPKL 52

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO43147 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZH2])

HSP 1 Score: 67.3958 bits (163), Expect = 4.778e-15
Identity = 58/221 (26.24%), Postives = 97/221 (43.89%), Query Frame = 1

Query:  211 EEDLKNLWNPKLFVENLYKENQNTTSLE----VYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNI-FVIMCL 858
            E+  K  W P  +  N  K N +  + E    + +P G     V    R+  T    + L+ FP D Q   + + S     E D+    T   T  +  E+ S E      VE  T  + T    G   Q +  F+ +  RR  YF I  +  +++L +L++C F +VP     R+ L +  +L+T+     V+  +PK+ Y+  +D  +LGN  F+ + L
Sbjct:   76 EDAGKLFWIPDTYFINAKKSNFHKVTKENARIIIYPSGN----VYYSVRLTLTLQCNMNLQLFPMDVQACPLFIESYAYTSE-DIKYKWTPRGTKGI--EIISNETAQFVLVEARTEQIATAKISGHFSQLVATFSLK--RRLEYFAITVVTPAMILVVLSWCCFWIVPDAIPARISLSVTTILSTLLLSGTVNAQMPKVSYMKAIDVFVLGNFAFIFLSL 287

HSP 2 Score: 31.187 bits (69), Expect = 4.778e-15
Identity = 16/49 (32.65%), Postives = 24/49 (48.98%), Query Frame = 2

Query:   14 YSSKLIQKKEQIPVEIRCVFVKICQVDTVNEV---YYADIFLQSKWREP 151
            Y  KL      +PVE++  F K+  +  +NE    +  DIF +  W EP
Sbjct:   15 YDKKLRPNAGGLPVEVQVEF-KVVSLGGINEASMEFSMDIFFRQWWHEP 62

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO26859 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TAV8])

HSP 1 Score: 62.3882 bits (150), Expect = 1.400e-11
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 1

Query:  508 QEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVF--TCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVI 849
            ++W ++ HV   T T      +GP  +   V+  T    RR  ++  N  ++  +L  L+F SFA+ P  T  RL + +++LL +V +K   S +LP+  YLT+LDK  LGN+  I
Sbjct:   16 RDWVLYPHVHTDTATQ-EGEGLGPNDRSYPVYIITAHVRRRAVHYFWNTAVVMSVLTALSFASFAIPPQQTADRLTVTLLLLLISVAYKFVTSLHLPRTSYLTFLDKYQLGNLLFI 130

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO38597 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCG0])

HSP 1 Score: 57.7658 bits (138), Expect = 3.546e-10
Identity = 52/216 (24.07%), Postives = 92/216 (42.59%), Query Frame = 1

Query:  220 LKNLWNPKLFVEN----LYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMC 855
            LKN W P +F++N     + E  +   +    PDG     ++   RI  T    +  ++FP D Q       S    E+ D++        L +S EVE  +++I    EV++       N G   + I     +  RR  Y++  + L + ++  L++ SF + P +   R+ L +I +L   +F        P + Y T LD      +++I C
Sbjct:   61 LKNTWRPDVFIKNSKEARFHEVPSDNVMYGISPDGN----ILLSSRITTTLSCQMNFRRFPMDVQKCHFQTGSYGHTED-DIVIRCRGGKGLIISDEVEISQYSI---TEVTSRDFKGVYNTGVFSEPIATIVLK--RRLMYYVYGYYLPAGLVVFLSWISFWIDPRSVPARVSLGVITILAMGSF--LHGGKGPSVSYATALD------VYIISC 258

HSP 2 Score: 24.6386 bits (52), Expect = 3.546e-10
Identity = 10/35 (28.57%), Postives = 16/35 (45.71%), Query Frame = 2

Query:   53 VEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLL 157
            V++      I  +D     +  DIF + +WRE  L
Sbjct:    6 VDVEAYVASIGAIDEKKMEFSVDIFFRQRWREERL 40

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Match: EDO38572 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SCG4])

HSP 1 Score: 59.3066 bits (142), Expect = 4.966e-10
Identity = 53/231 (22.94%), Postives = 98/231 (42.42%), Query Frame = 1

Query:  220 LKNLWNPKLFVENLYKENQNTTSLEV------YFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFL 894
            + NLW P  ++ENL +     +           FP+G     V+   R++ T    +    FP D Q  S+T+SS    E+ DL     D+S      +    ++++     +    V T+          +V T R  RR + +L++  + +++  +L++ SF + P +   R  L +I +L    F     ++ P + Y+   D  IL     + C  L +A+   FF+
Sbjct:   39 VNNLWKPDTYIENLKRLEMGFSGGPFINEGLRLFPNGL----VLISSRVSATLSCAMNFHNFPMDRQSCSVTISSYFFTED-DLYYDWNDVSIY----KGNLSQFDLLGLDSLRKSLVFTSGTYSS-----LVATFRFRRRIQNYLLSFYVPTILTVMLSWVSFFISPNSAPARCALGIITVLAVGGFLTNQRKSFPTVSYVMSADLYILVCYVFVFCALLEYAVVHFFFV 255

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrb1 (gamma-aminobutyric acid type A receptor beta1 subunit [Source:NCBI gene;Acc:101154825])

HSP 1 Score: 61.2326 bits (147), Expect = 6.212e-10
Identity = 49/217 (22.58%), Postives = 105/217 (48.39%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDL-LESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRKIE 942
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++   +  ++  ++     +E  +++I  +  +ST  V    +  P++      + +  R   YF++   + S ++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF    +LQK   E  +  E
Sbjct:  142 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWQGGSNAGSVTGVENIELPQFSIIDYQTLSTKAVFATGSY-PRLS----LSFKLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGRGPHLQKKAAEKAKSNE 349

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: GABRB2 (gamma-aminobutyric acid receptor subunit beta-2 [Source:NCBI gene;Acc:101167169])

HSP 1 Score: 60.8474 bits (146), Expect = 1.057e-9
Identity = 44/205 (21.46%), Postives = 93/205 (45.37%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S     +      +  +  +     +E  +++I  H  +S   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  145 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGVGAVTGVERIELPQFSIVDHKLISK-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 340

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:NCBI gene;Acc:101165384])

HSP 1 Score: 60.4622 bits (145), Expect = 1.272e-9
Identity = 53/214 (24.77%), Postives = 104/214 (48.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSEC-SIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V+  +E  +++I  +  VS   VV +    P++   + F  R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  166 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGDTAVTGVT-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS--LSFKLR--RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKALK 369

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: GABRB2 (gamma-aminobutyric acid receptor subunit beta-2 [Source:NCBI gene;Acc:101167169])

HSP 1 Score: 60.4622 bits (145), Expect = 1.276e-9
Identity = 44/205 (21.46%), Postives = 93/205 (45.37%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSK 918
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S     +      +  +  +     +E  +++I  H  +S   VV +    P++      + +  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G    +    L +A  +  F  +  Q+ K
Sbjct:  140 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGVGAVTGVERIELPQFSIVDHKLISK-NVVFSTGAYPRLS----LSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQK 335

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Match: gabrb3 (gamma-aminobutyric acid type A receptor beta3 subunit [Source:NCBI gene;Acc:101165384])

HSP 1 Score: 60.077 bits (144), Expect = 1.733e-9
Identity = 53/214 (24.77%), Postives = 104/214 (48.60%), Query Frame = 1

Query:  304 PDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSS-ECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILG-NIFVIMCLCLWHALTSIFF-LNQNLQKSKIENIRK 936
            PDG     V+   RI  T    ++L+++P D Q+ ++ + S   + ++++      D +   V+  +E  +++I  +  VS   VV +    P++   + F  R  R   YF++   + S+++ +L++ SF +    +  R+ L +  +LT  T    + + LPKIPY+  +D  ++G  +FV + L  +  +  IFF     +QK   E   K
Sbjct:  144 PDGT----VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGDTAVTGVT-RIELPQFSIVDYKLVSR-NVVFSTGAYPRLS--LSFKLR--RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKALK 347

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000064442.1 (SMESG000064442.1)

HSP 1 Score: 619.002 bits (1595), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 1

Query:  217 DLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKEDYSELHSQ 1116
            DLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKEDYSELHSQ
Sbjct:   59 DLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKEDYSELHSQ 358

HSP 2 Score: 114.39 bits (285), Expect = 2.221e-28
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 2

Query:    8 MTYSSKLIQKKEQIPVEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDNSLDSQ 178
            M YSSKLIQKKEQIPVEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLD SLDSQ
Sbjct:    1 MKYSSKLIQKKEQIPVEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDKSLDSQ 57

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000041696.1 (SMESG000041696.1)

HSP 1 Score: 403.29 bits (1035), Expect = 6.026e-140
Identity = 190/301 (63.12%), Postives = 235/301 (78.07%), Query Frame = 1

Query:  208 KEEDLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFF-----LNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKED 1095
            K +++  LWNPK+ +EN+YKEN+ T   EV++PD K  AY+IEKRRIN  FHETLELKQFPFDCQDLSI VS+E S +E+  +E   D+S LN+S  ++SQEW++HSHV+V    V+++CNIGP+ +  I FTCRASRRF YF++NH+LIS M  LLTFCSFAV+  NTHGRLQLCMIILLT+VTFKVAVS+NLPKIPYLTYLDKA+LGNIF+IMCLC+WHA TSIFF     LN   +   +E IRKIE  +IP LL  Y+ +IF+FGL IYFDAG RR+LMK KD+EF KK+     E+
Sbjct:   50 KSKEISKLWNPKIHIENIYKENKQTVVREVHYPDKKGSAYMIEKRRINAIFHETLELKQFPFDCQDLSIVVSTELSADEMIFVEYPNDISKLNLSDAIDSQEWDLHSHVDVEIKEVISDCNIGPEKRYTITFTCRASRRFGYFILNHMLISSMFVLLTFCSFAVISNNTHGRLQLCMIILLTSVTFKVAVSENLPKIPYLTYLDKAVLGNIFMIMCLCMWHAATSIFFYDFKTLNYITENRVLEVIRKIEMILIPSLLVFYLFSIFIFGLIIYFDAGNRRKLMKSKDIEFEKKIIKMNNEE 350

HSP 2 Score: 69.3218 bits (168), Expect = 8.320e-13
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 2

Query:   29 IQKKEQIPVEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDNSLD 172
            + KK QI V IRCVFVKI  VDTVNE + A+IFLQSKWREP LDN  D
Sbjct:    1 MDKKRQIRVYIRCVFVKIFHVDTVNEHFSAEIFLQSKWREPSLDNVKD 48

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000041740.1 (SMESG000041740.1)

HSP 1 Score: 382.874 bits (982), Expect = 8.570e-132
Identity = 181/301 (60.13%), Postives = 227/301 (75.42%), Query Frame = 1

Query:  208 KEEDLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKS-----KIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKED 1095
            K  DL   WNP+L +ENL+KEN  T  LEV + + +  A+V++KRR+   FHETLEL QFPFDCQDLS+TVSSE S +EV+L+E  TD+S LN S  VESQEW++HSHV+V    ++T+CNIGP+ +  I FTCRA RRF YFL+NH LIS M   LTFCSF+V+ +NT GRLQLCMI LLT+VTFKVAVS NLPK+PYLTYLDKAILGNIF+IMCLCLWHA TS++F +    +S      IE ++++E ++IP LL  Y+ A+ VF L IYFDAG RRR M LKD+EF +K+K  K E+
Sbjct:   57 KNIDLSKFWNPRLVIENLFKENNETVLLEVSYVEKEGVAFVVQKRRVKAIFHETLELNQFPFDCQDLSVTVSSEYSSDEVELVEFPTDISKLNSSDAVESQEWDLHSHVDVEIKRIITDCNIGPKERTSITFTCRAGRRFGYFLVNHFLISCMFFFLTFCSFSVISSNTFGRLQLCMITLLTSVTFKVAVSNNLPKVPYLTYLDKAILGNIFMIMCLCLWHAATSVYFYDSTTLQSINDSIAIEKVKQVEKYLIPALLIFYVTAVVVFALVIYFDAGSRRREMHLKDIEFEQKIKRLKNEE 357

HSP 2 Score: 67.3958 bits (163), Expect = 4.015e-12
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 2

Query:   53 VEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDNSLDSQ 178
            V IRCVF+KI QVDTVNE Y A+IFLQ+KWREP+LDN L+++
Sbjct:   16 VFIRCVFLKIFQVDTVNEYYNAEIFLQAKWREPILDNKLETK 57

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000064435.1 (SMESG000064435.1)

HSP 1 Score: 361.688 bits (927), Expect = 1.327e-123
Identity = 170/291 (58.42%), Postives = 222/291 (76.29%), Query Frame = 1

Query:  217 DLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQ-KSKIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCK 1086
            DLKN WNPKL +EN++ EN+ + SLEV + + +  AY++EKRR+  +FHE LELK FPFDCQDLSI V++E S + VDL+ES  D S LNVS  +ESQEW+++SHVEV    +  +CNIGP+ + I++FTCRASRRFRYFLINH LIS +  LLTF SF+++ TN  GRLQLCM  LLT+VTFKVAVSQ+LPKIPYLTYLDK ILGNIF+IMC+C+WHA T+IF+ N ++   + +E IR +E  +IP +L+ Y +A+ V+ + IY+DAG RRR M +KD EF K  K  +
Sbjct:   60 DLKNFWNPKLRIENIFTENKVSVSLEVSYSEKEGVAYLMEKRRVKASFHEILELKHFPFDCQDLSIIVTTEYSSDYVDLMESPHDPSKLNVSDGIESQEWSLYSHVEVLKDRLKNDCNIGPEERSILIFTCRASRRFRYFLINHFLISSIFFLLTFTSFSIISTNAFGRLQLCMTTLLTSVTFKVAVSQSLPKIPYLTYLDKTILGNIFMIMCVCMWHAGTAIFYFNTSISTDATVERIRNVELILIPSILSFYGLAVMVYSIIIYYDAGTRRREMAVKDAEFEKAWKKVR 350

HSP 2 Score: 68.1662 bits (165), Expect = 2.051e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2

Query:   32 QKKEQIPVEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDNSLD 172
            Q+  Q  + +RCVF+KI +VDTVNE YYA+IFLQ+KWREPLLDN  D
Sbjct:    9 QEPVQKKIYLRCVFIKIFKVDTVNENYYAEIFLQAKWREPLLDNECD 55

[Close]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Match: SMESG000064433.1 (SMESG000064433.1)

HSP 1 Score: 351.288 bits (900), Expect = 1.564e-119
Identity = 168/296 (56.76%), Postives = 220/296 (74.32%), Query Frame = 1

Query:  208 KEEDLKNLWNPKLFVENLYKENQNTTSLEVYFPDGKDGAYVIEKRRINGTFHETLELKQFPFDCQDLSITVSSECSIEEVDLLESKTDLSTLNVSSEVESQEWNIHSHVEVSTMTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFAVVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFVIMCLCLWHALTSIFFLNQNLQKS-KIENIRKIECFIIPILLTSYIMAIFVFGLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKE 1092
            K+ +L + WNPKL +EN++ EN+++ SLEV F + K  A++IEKRR+  +F ETLEL+ FPFDCQDLS++V++E SI+EVDL+E+  D+S LN    +ESQEWN++ HVEV   T++ +CNIGP+ ++I+ FTCRASRRF+YFLINH LIS M  LLTF SF++ P+ T+GRL LCM  LLT+VTFKVAVSQNLPKIPYLTYLDK ILGNI  IM LC WHA TS FF +  +  +    N++++E +II   L  Y + I +FGL IYFDAG RRR M  KD EF + L+  + E
Sbjct:   57 KDVNLFSFWNPKLIIENIFTENKSSVSLEVTFTE-KYEAFIIEKRRVKASFRETLELQHFPFDCQDLSVSVATEYSIDEVDLVETPNDVSKLNTLDGIESQEWNLYEHVEVEAKTMINDCNIGPKERQIMTFTCRASRRFKYFLINHFLISSMFFLLTFTSFSIPPSPTYGRLALCMTTLLTSVTFKVAVSQNLPKIPYLTYLDKTILGNILFIMLLCFWHASTSFFFNDTTISSATATANVKQVETYIISCFLGVYGLVILIFGLVIYFDAGSRRREMSDKDREFKRLLEKIENE 351

HSP 2 Score: 62.7734 bits (151), Expect = 1.139e-10
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 2

Query:   53 VEIRCVFVKICQVDTVNEVYYADIFLQSKWREPLLDN 163
            V +RCVFVKI +VDTVNE Y  +IFLQSKWREPLLD+
Sbjct:   16 VYLRCVFVKIYKVDTVNEFYSGEIFLQSKWREPLLDH 52

The following BLAST results are available for this feature:

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Yeast
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
GABRB3	3.868e-11	23.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
GABRB3	1.546e-10	23.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
GABRB3	1.546e-10	23.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
GABRB3	1.546e-10	23.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
GABRB3	1.546e-10	23.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
pHCl-2	3.836e-11	24.07	gene:FBgn0039840 transcript:FBtr0347502	[more]
pHCl-2	3.836e-11	24.07	gene:FBgn0039840 transcript:FBtr0085766	[more]
CG6927	1.035e-9	25.18	gene:FBgn0029733 transcript:FBtr0070721	[more]
HisCl1	1.313e-8	22.27	gene:FBgn0037950 transcript:FBtr0082470	[more]
HisCl1	1.367e-8	22.27	gene:FBgn0037950 transcript:FBtr0082471	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gabrb3	2.104e-9	23.83	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
gabrb3	2.104e-9	23.83	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
gabrb3	2.241e-9	23.83	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
gabrb4	3.143e-9	24.04	gamma-aminobutyric acid type A receptor beta4 subu...	[more]
gabrb2a	3.572e-9	21.57	gamma-aminobutyric acid type A receptor beta2 subu...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSXETT00000020814.1	2.685e-10	23.22	gamma-aminobutyric acid type A receptor theta subu...	[more]
ENSXETT00000020832.1	2.970e-10	23.22	gamma-aminobutyric acid type A receptor theta subu...	[more]
dusp5	4.236e-9	23.83	dual specificity phosphatase 5 [Source:Xenbase;Acc...	[more]
dusp5	4.362e-9	23.83	dual specificity phosphatase 5 [Source:Xenbase;Acc...	[more]
gabrb2	6.141e-9	24.15	gamma-aminobutyric acid (GABA) A receptor, beta 2 ...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Gabrb3	9.490e-11	23.30	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrb3	1.313e-10	23.30	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrb3	1.470e-10	23.30	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrb2	5.457e-10	23.90	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]
Gabrb2	6.508e-10	23.90	gamma-aminobutyric acid (GABA) A receptor, subunit...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P0C7B7\|ELIC_DICCH	3.191e-10	26.36	Cys-loop ligand-gated ion channel OS=Dickeya chrys...	[more]
sp\|P63079\|GBRB3_RAT	6.638e-10	23.30	Gamma-aminobutyric acid receptor subunit beta-3 OS...	[more]
sp\|P63080\|GBRB3_MOUSE	6.638e-10	23.30	Gamma-aminobutyric acid receptor subunit beta-3 OS...	[more]
sp\|P28472\|GBRB3_HUMAN	7.589e-10	23.30	Gamma-aminobutyric acid receptor subunit beta-3 OS...	[more]
sp\|P63138\|GBRB2_RAT	3.817e-9	23.90	Gamma-aminobutyric acid receptor subunit beta-2 OS...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A4E0RSR9	1.345e-72	45.17	Uncharacterized protein OS=Fasciola hepatica OX=61...	[more]
A0A3R7CFX9	1.363e-72	46.26	Neuronal acetylcholine receptor subunit alpha-7 OS...	[more]
A0A075A8W6	4.537e-70	46.59	Uncharacterized protein OS=Opisthorchis viverrini ...	[more]
A0A2H1C9P4	1.175e-67	42.39	Uncharacterized protein OS=Fasciola hepatica OX=61...	[more]
A0A5K4FCR6	1.850e-67	45.17	Uncharacterized protein OS=Schistosoma mansoni OX=...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gabrb3	5.272e-10	24.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
gabrb3	8.295e-10	24.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
gabrb3	9.671e-10	24.30	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
GABRB2	7.386e-9	21.57	gamma-aminobutyric acid receptor subunit beta-2 [S...	[more]
GABRB2	9.663e-9	21.57	gamma-aminobutyric acid receptor subunit beta-2 [S...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
gabrb3	4.339e-9	22.16	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
gabrb3	3.567e-8	23.46	gamma-aminobutyric acid type A receptor beta3 subu...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO32790	7.203e-24	30.90	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO43147	4.778e-15	26.24	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO26859	1.400e-11	33.62	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38597	3.546e-10	24.07	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38572	4.966e-10	22.94	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
gabrb1	6.212e-10	22.58	gamma-aminobutyric acid type A receptor beta1 subu...	[more]
GABRB2	1.057e-9	21.46	gamma-aminobutyric acid receptor subunit beta-2 [S...	[more]
gabrb3	1.272e-9	24.77	gamma-aminobutyric acid type A receptor beta3 subu...	[more]
GABRB2	1.276e-9	21.46	gamma-aminobutyric acid receptor subunit beta-2 [S...	[more]
gabrb3	1.733e-9	24.77	gamma-aminobutyric acid type A receptor beta3 subu...	[more]

BLAST of Neur_chan_LBD domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000064442.1	2.221e-28	100.00	SMESG000064442.1	[more]
SMESG000041696.1	6.026e-140	63.12	SMESG000041696.1	[more]
SMESG000041740.1	8.570e-132	60.13	SMESG000041740.1	[more]
SMESG000064435.1	1.327e-123	58.42	SMESG000064435.1	[more]
SMESG000064433.1	1.564e-119	56.76	SMESG000064433.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30010012 ID=SMED30010012|Name=Neur_chan_LBD domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1172bp
CTGTATCATGACATATAGTTCAAAACTAATTCAAAAAAAAGAACAAATTC
CCGTGGAAATTCGCTGTGTATTTGTTAAAATTTGCCAGGTAGATACAGTT
AATGAGGTGTATTATGCAGACATATTTCTTCAATCAAAATGGAGGGAACC
ACTTTTGGATAATTCCTTGGACTCACAAGTAGAAGTAAAAGAATTCCGAA
GATTTGAAAAGAAGAAGATTTGAAGAATTTGTGGAATCCAAAATTGTTTG
TCGAAAATTTGTATAAAGAAAATCAGAATACAACTTCGTTGGAAGTCTAC
TTTCCAGATGGGAAGGATGGTGCTTATGTGATTGAAAAAAGAAGAATAAA
TGGAACGTTCCACGAAACATTAGAATTAAAACAATTCCCATTTGACTGCC
AGGATTTATCAATAACAGTGAGTTCAGAATGTTCTATTGAAGAAGTAGAT
TTGCTTGAATCCAAAACAGATTTAAGCACACTGAATGTTTCATCTGAAGT
TGAATCGCAAGAATGGAATATTCACTCTCATGTTGAGGTTTCAACTATGA
CAGTGGTGACGAATTGCAATATCGGACCACAAATGCAACGGATTATTGTT
TTTACATGTCGCGCGAGTCGCCGATTTCGATACTTTTTGATCAACCATAT
TTTAATAAGTGTTATGCTTTGTTTATTAACATTCTGTAGTTTTGCTGTAG
TTCCTACTAATACACATGGCCGTCTTCAATTGTGCATGATTATTTTGCTG
ACCACAGTAACTTTCAAAGTTGCTGTTAGCCAAAATCTTCCAAAGATTCC
ATATTTAACGTATTTGGACAAAGCGATTCTGGGAAATATTTTTGTAATAA
TGTGCCTATGCCTGTGGCATGCTCTCACTTCCATATTTTTCCTTAATCAA
AATCTCCAAAAATCTAAAATTGAAAATATCAGAAAAATTGAGTGTTTCAT
AATTCCGATTTTGCTTACCTCATATATTATGGCCATTTTTGTATTTGGTT
TGGCAATCTATTTTGACGCTGGAAAGCGACGGAGGTTGATGAAATTAAAA
GATTTGGAATTCGGTAAAAAATTAAAGAGTTGTAAAAAAGAAGACTACAG
TGAACTGCATTCTCAATGAACTCTGCCTGTACTAAAATCAATTAATAGAA
CAATTTATCTATAATGAGAAAG

protein sequence of SMED30010012-orf-1

>SMED30010012-orf-1 ID=SMED30010012-orf-1|Name=SMED30010012-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=191bp
MTVVTNCNIGPQMQRIIVFTCRASRRFRYFLINHILISVMLCLLTFCSFA
VVPTNTHGRLQLCMIILLTTVTFKVAVSQNLPKIPYLTYLDKAILGNIFV
IMCLCLWHALTSIFFLNQNLQKSKIENIRKIECFIIPILLTSYIMAIFVF
GLAIYFDAGKRRRLMKLKDLEFGKKLKSCKKEDYSELHSQ*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0004888	transmembrane signaling receptor activity
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000099	neuron

Vocabulary: **INTERPRO**
Term	Definition
IPR036719	Neuro-gated_channel_TM_sf
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM

Vocabulary: **cellular component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **biological process**
Term	Definition
GO:0006810	transport
GO:0006811	ion transport
GO:0034220	ion transmembrane transport

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.58.390		coord: 28..154 e-value: 6.8E-17 score: 63.6
None	No IPR available	CDD	cd19050	LGIC_TM_bact	coord: 29..147 e-value: 3.52519E-11 score: 55.6774
None	No IPR available	TMHMM	TMhelix		coord: 62..81
None	No IPR available	TMHMM	TMhelix		coord: 134..156
None	No IPR available	TMHMM	TMhelix		coord: 94..116
None	No IPR available	TMHMM	TMhelix		coord: 30..52
IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	SUPERFAMILY	SSF90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 29..140

Main menu

Neur_chan_LBD domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

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