serine/arginine-rich splicing factor 1B

Overview
Nameserine/arginine-rich splicing factor 1B
Smed IDSMED30009996
Length (bp)858
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of serine/arginine-rich splicing factor 1B (SMED30009996) t-SNE clustered cells

Violin plots show distribution of expression levels for serine/arginine-rich splicing factor 1B (SMED30009996) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of serine/arginine-rich splicing factor 1B (SMED30009996) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for serine/arginine-rich splicing factor 1B (SMED30009996) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30009996

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30009996h1SMcG0016888 Contig405newmark_estsPMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30009996h1SMcG0016888 Contig405uc_Smed_v2PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
X1 cellSMED30009996h1SMcG0016888 SmedASXL_014302SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30009996h1SMcG0016888 Contig24812newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30009996h1SMcG0016888 Contig24812uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
nervous systemSMED30009996h1SMcG0016888 dd_Smed_v4_3866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30009996h1SMcG0016888 dd_Smed_v4_3866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009996h1SMcG0016888 dd_Smed_v4_3866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30009996h1SMcG0016888 dd_Smed_v4_3866_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
oocyteSMED30009996h1SMcG0016888 Contig23822newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30009996h1SMcG0016888 Contig23822newmark_estsPMID:28434803
Rouhana et al., 2017		whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Human
Match: SRSF1 (serine and arginine rich splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:10780])

HSP 1 Score: 214.542 bits (545), Expect = 1.754e-68
Identity = 117/182 (64.29%), Postives = 141/182 (77.47%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Human
Match: SRSF1 (serine and arginine rich splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:10780])

HSP 1 Score: 214.157 bits (544), Expect = 2.077e-68
Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Human
Match: AC015813.2 (novel transcript)

HSP 1 Score: 201.445 bits (511), Expect = 3.422e-64
Identity = 112/179 (62.57%), Postives = 136/179 (75.98%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRV 634
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SH  E+ Y R+
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH--EVGYTRI 190
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Human
Match: SRSF1 (serine and arginine rich splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:10780])

HSP 1 Score: 201.445 bits (511), Expect = 3.422e-64
Identity = 112/179 (62.57%), Postives = 136/179 (75.98%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRV 634
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SH  E+ Y R+
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH--EVGYTRI 190
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Human
Match: SRSF1 (serine and arginine rich splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:10780])

HSP 1 Score: 201.445 bits (511), Expect = 3.422e-64
Identity = 112/179 (62.57%), Postives = 136/179 (75.98%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRV 634
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SH  E+ Y R+
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSH--EVGYTRI 190
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 184.496 bits (467), Expect = 4.043e-57
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNN---------ENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            G    +K+YVGNLP D+R ++++D+F+K+G+I  +DIK  + P FAF+EF+D RDAEDAV  R+GY +DG R+RVEF RG           ++ G+         +   R         + +RV V GLPPTGSWQDLKDHMR+AGDV +ADV RDGTGV EF R ED+KYA++ LDDTKF+SHEGE +YIRV ED
Sbjct:    4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRR--TGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRED 197
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 184.496 bits (467), Expect = 4.043e-57
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNN---------ENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            G    +K+YVGNLP D+R ++++D+F+K+G+I  +DIK  + P FAF+EF+D RDAEDAV  R+GY +DG R+RVEF RG           ++ G+         +   R         + +RV V GLPPTGSWQDLKDHMR+AGDV +ADV RDGTGV EF R ED+KYA++ LDDTKF+SHEGE +YIRV ED
Sbjct:    4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRR--TGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRED 197
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 184.496 bits (467), Expect = 4.043e-57
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNN---------ENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            G    +K+YVGNLP D+R ++++D+F+K+G+I  +DIK  + P FAF+EF+D RDAEDAV  R+GY +DG R+RVEF RG           ++ G+         +   R         + +RV V GLPPTGSWQDLKDHMR+AGDV +ADV RDGTGV EF R ED+KYA++ LDDTKF+SHEGE +YIRV ED
Sbjct:    4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRR--TGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRED 197
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 184.496 bits (467), Expect = 4.043e-57
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNN---------ENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            G    +K+YVGNLP D+R ++++D+F+K+G+I  +DIK  + P FAF+EF+D RDAEDAV  R+GY +DG R+RVEF RG           ++ G+         +   R         + +RV V GLPPTGSWQDLKDHMR+AGDV +ADV RDGTGV EF R ED+KYA++ LDDTKF+SHEGE +YIRV ED
Sbjct:    4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRR--TGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRED 197
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Celegans
Match: rsp-3 (Probable splicing factor, arginine/serine-rich 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9NEW6])

HSP 1 Score: 184.496 bits (467), Expect = 4.043e-57
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNN---------ENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            G    +K+YVGNLP D+R ++++D+F+K+G+I  +DIK  + P FAF+EF+D RDAEDAV  R+GY +DG R+RVEF RG           ++ G+         +   R         + +RV V GLPPTGSWQDLKDHMR+AGDV +ADV RDGTGV EF R ED+KYA++ LDDTKF+SHEGE +YIRV ED
Sbjct:    4 GGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRR--TGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRED 197
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Fly
Match: SF2 (gene:FBgn0283477 transcript:FBtr0083272)

HSP 1 Score: 217.624 bits (553), Expect = 4.143e-70
Identity = 112/190 (58.95%), Postives = 148/190 (77.89%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYS-NRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCG 649
            G  ++ ++YVGNLPPDIR +D+ DLF+KFGK+  +D+K+R+ PPFAF+EF+D RDA+DAV  R+GY+YDGYRLRVEFPRG    +    + N ++ +          P++RS++RV V+GLP +GSWQDLKDHMREAGDV  AD ++DG+GV EFLR EDMKYAIK LDD++F+SHEGE++YIRV ED G
Sbjct:    2 GSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSG 191
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Fly
Match: SF2 (gene:FBgn0283477 transcript:FBtr0304727)

HSP 1 Score: 217.624 bits (553), Expect = 4.143e-70
Identity = 112/190 (58.95%), Postives = 148/190 (77.89%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYS-NRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCG 649
            G  ++ ++YVGNLPPDIR +D+ DLF+KFGK+  +D+K+R+ PPFAF+EF+D RDA+DAV  R+GY+YDGYRLRVEFPRG    +    + N ++ +          P++RS++RV V+GLP +GSWQDLKDHMREAGDV  AD ++DG+GV EFLR EDMKYAIK LDD++F+SHEGE++YIRV ED G
Sbjct:    2 GSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGSGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSG 191
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Fly
Match: B52 (gene:FBgn0004587 transcript:FBtr0082802)

HSP 1 Score: 100.138 bits (248), Expect = 3.388e-24
Identity = 71/181 (39.23%), Postives = 98/181 (54.14%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAE-----------EKNLTRNTTS--APSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKF 598
            ++YVG LP  +R RDL+  F  +G+  DI IK+     + F+EF+D RDA+DAV   NG    G R+ VE  RG    +     + +             EKN    ++S   P  R+E+R+ V  L    SWQDLKD+MR+AG+V +AD    R   GV EF  + DMK AI+ LDDT+ 
Sbjct:    5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNG----YGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTEL 181
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Fly
Match: B52 (gene:FBgn0004587 transcript:FBtr0308197)

HSP 1 Score: 100.138 bits (248), Expect = 5.675e-24
Identity = 71/181 (39.23%), Postives = 98/181 (54.14%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAE-----------EKNLTRNTTS--APSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKF 598
            ++YVG LP  +R RDL+  F  +G+  DI IK+     + F+EF+D RDA+DAV   NG    G R+ VE  RG    +     + +             EKN    ++S   P  R+E+R+ V  L    SWQDLKD+MR+AG+V +AD    R   GV EF  + DMK AI+ LDDT+ 
Sbjct:    5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNG----YGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTEL 181
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Fly
Match: B52 (gene:FBgn0004587 transcript:FBtr0308195)

HSP 1 Score: 100.138 bits (248), Expect = 5.675e-24
Identity = 71/181 (39.23%), Postives = 98/181 (54.14%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAE-----------EKNLTRNTTS--APSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKF 598
            ++YVG LP  +R RDL+  F  +G+  DI IK+     + F+EF+D RDA+DAV   NG    G R+ VE  RG    +     + +             EKN    ++S   P  R+E+R+ V  L    SWQDLKD+MR+AG+V +AD    R   GV EF  + DMK AI+ LDDT+ 
Sbjct:    5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNG----YGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTEL 181
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Zebrafish
Match: srsf1b (serine and arginine rich splicing factor 1b [Source:NCBI gene;Acc:393565])

HSP 1 Score: 216.468 bits (550), Expect = 1.178e-69
Identity = 116/182 (63.74%), Postives = 137/182 (75.27%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGG---RGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 194
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Zebrafish
Match: srsf1a (serine and arginine rich splicing factor 1a [Source:NCBI gene;Acc:406288])

HSP 1 Score: 215.312 bits (547), Expect = 4.066e-69
Identity = 117/182 (64.29%), Postives = 141/182 (77.47%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV  R+GY+YDGYRLRVEFPR            R              PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRG------MGRGGFGGGGGGGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 191
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Zebrafish
Match: srsf1a (serine and arginine rich splicing factor 1a [Source:NCBI gene;Acc:406288])

HSP 1 Score: 215.698 bits (548), Expect = 4.362e-69
Identity = 117/189 (61.90%), Postives = 142/189 (75.13%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSA-------PSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV  R+GY+YDGYRLRVEFPR         +                A       PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 204
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Zebrafish
Match: srsf1a (serine and arginine rich splicing factor 1a [Source:NCBI gene;Acc:406288])

HSP 1 Score: 215.698 bits (548), Expect = 4.362e-69
Identity = 117/189 (61.90%), Postives = 142/189 (75.13%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSA-------PSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV  R+GY+YDGYRLRVEFPR         +                A       PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 204
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Zebrafish
Match: srsf1a (serine and arginine rich splicing factor 1a [Source:NCBI gene;Acc:406288])

HSP 1 Score: 202.216 bits (513), Expect = 8.245e-65
Identity = 110/171 (64.33%), Postives = 132/171 (77.19%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHE 610
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV  R+GY+YDGYRLRVEFPR            R              PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHE
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRG------MGRGGFGGGGGGGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 180
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Xenopus
Match: tent5a (terminal nucleotidyltransferase 5A [Source:Xenbase;Acc:XB-GENE-5843475])

HSP 1 Score: 216.083 bits (549), Expect = 7.295e-69
Identity = 117/198 (59.09%), Postives = 138/198 (69.70%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT----------------RNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR      G                              R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 214
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Xenopus
Match: tent5a (terminal nucleotidyltransferase 5A [Source:Xenbase;Acc:XB-GENE-5843475])

HSP 1 Score: 215.312 bits (547), Expect = 1.099e-68
Identity = 117/198 (59.09%), Postives = 138/198 (69.70%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT----------------RNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR      G                              R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 214
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Xenopus
Match: lhx3 (LIM homeobox 3 [Source:Xenbase;Acc:XB-GENE-490075])

HSP 1 Score: 195.667 bits (496), Expect = 1.587e-61
Identity = 105/181 (58.01%), Postives = 129/181 (71.27%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXX---XXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRV 634
            ++YVGNLP DIR ++L+DLF ++G+I  I++K+       PFAFI F DPRDAEDAV  RNGY +   RLRVEFPR    +               +R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADV +DG G+ EF+R EDM+YA++ LDDTKF+SHEGE SYIRV
Sbjct:   17 RIYVGNLPADIREKELEDLFDRYGRIRTIELKNRGGSSAAPFAFISFQDPRDAEDAVFARNGYEFGSCRLRVEFPRSFRGSG---------GGYGGSRGRNGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVHKDGMGIVEFIRKEDMEYALRKLDDTKFRSHEGETSYIRV 188
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Xenopus
Match: srsf6 (serine/arginine-rich splicing factor 6 [Source:NCBI gene;Acc:407954])

HSP 1 Score: 89.7373 bits (221), Expect = 1.358e-19
Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRG-NNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKF 598
            ++Y+G L   +R +D+   F  +GK++++D+K+     + F+EF+D RDA+DAV   NG +  G R+ VE  RG   +  G  Y +R       +      P  R+EFR+ V  L    SWQDLKD MR+AG+V +AD    R   GV EF    DMK A++ LD T+ 
Sbjct:    3 RVYIGRLGYHVREKDIQRFFGGYGKLLEVDLKNG----YGFVEFEDSRDADDAVYELNGKDLCGERVIVEHARGPRRDRDGYGYGSRSGYRNQRSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMKRAMEKLDGTEI 167
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Xenopus
Match: srsf5 (serine/arginine-rich splicing factor 5 [Source:NCBI gene;Acc:448003])

HSP 1 Score: 85.1149 bits (209), Expect = 9.309e-19
Identity = 66/172 (38.37%), Postives = 92/172 (53.49%), Query Frame = 2 
Query:   89 LSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPR-----GNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRD--GTGVCEFLRVEDMKYAIKHL 583
            +S  ++++G L P  R +D++  F  +G+I DID+K      F F+EFDDPRDA+DAV   +G      R+ +E  R     G        Y++R +  +   R   SAP  R+E R+ V  L    SWQDLKD MR+AG+V  AD  R     GV EF    D+K AI+ L
Sbjct:    1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG----FGFVEFDDPRDADDAVYELDGKELCNERVTIEHARLRSRGGPRGLGRGRYNDRFSSRR--PRGDRSAPPIRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNAIEKL 166
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Mouse
Match: Srsf1 (serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283])

HSP 1 Score: 214.542 bits (545), Expect = 1.204e-68
Identity = 117/182 (64.29%), Postives = 141/182 (77.47%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Mouse
Match: Srsf1 (serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283])

HSP 1 Score: 214.542 bits (545), Expect = 1.204e-68
Identity = 117/182 (64.29%), Postives = 141/182 (77.47%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Mouse
Match: Srsf1 (serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283])

HSP 1 Score: 214.157 bits (544), Expect = 1.426e-68
Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Mouse
Match: Srsf1 (serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283])

HSP 1 Score: 214.157 bits (544), Expect = 1.426e-68
Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Mouse
Match: Srsf1 (serine/arginine-rich splicing factor 1 [Source:MGI Symbol;Acc:MGI:98283])

HSP 1 Score: 200.29 bits (508), Expect = 8.556e-64
Identity = 108/171 (63.16%), Postives = 127/171 (74.27%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHE 610
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHE
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 184
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. UniProt/SwissProt
Match: sp|Q5ZML3|SRSF1_CHICK (Serine/arginine-rich splicing factor 1 OS=Gallus gallus OX=9031 GN=SRSF1 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.559e-69
Identity = 118/182 (64.84%), Postives = 142/182 (78.02%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. UniProt/SwissProt
Match: sp|Q6NYA0|SRS1B_DANRE (Serine/arginine-rich splicing factor 1B OS=Danio rerio OX=7955 GN=srsf1b PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.889e-69
Identity = 116/182 (63.74%), Postives = 137/182 (75.27%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGG---RGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 194
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. UniProt/SwissProt
Match: sp|Q7SXP4|SRS1A_DANRE (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 3.293e-68
Identity = 117/189 (61.90%), Postives = 142/189 (75.13%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSA-------PSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAF+EF+DPRDAEDAV  R+GY+YDGYRLRVEFPR         +                A       PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 204
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. UniProt/SwissProt
Match: sp|Q6DII2|SRSF1_XENTR (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 5.824e-68
Identity = 117/198 (59.09%), Postives = 138/198 (69.70%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT----------------RNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR      G                              R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 214
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. UniProt/SwissProt
Match: sp|Q5R7H2|SRSF1_PONAB (Serine/arginine-rich splicing factor 1 OS=Pongo abelii OX=9601 GN=SRSF1 PE=2 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 9.976e-68
Identity = 115/182 (63.19%), Postives = 136/182 (74.73%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV GR+GY+YDGYRLRVEFPR                     R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG---RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. TrEMBL
Match: A0A023FXP3 (Putative alternative splicing factor asf/sf2 rrm superfamily OS=Amblyomma parvum OX=251391 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 3.262e-77
Identity = 135/222 (60.81%), Postives = 161/222 (72.52%), Query Frame = 2 
Query:   71 MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGXXXXXXXXXXNFKHRINGRKTPTYSPMRR 736
            MS+ G+  +  +YVGNLPPDIR +D++DLFYKFGKI  ID+K+R+ PPFAF+EFDDPRDAEDAV  R+GY+YDGYRLRVEFPRG+    GN    R              P+RRS++RV VSGLPP+GSWQDLKDHMREAGDV +ADVF+DGTGV EFLR EDMKYA+K LDD++F+SHEGE+SYIRV ED                    R +PTYSP RR
Sbjct:    1 MSFRGNECR--IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYDYDGYRLRVEFPRGSAPGRGNMGPGR----------GRGPPARRSQYRVLVSGLPPSGSWQDLKDHMREAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEVSYIRVRED---YSSRSRSRSRSYSPRRSRGSPTYSPARR 207
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. TrEMBL
Match: A0A0P4VNT0 (Putative serine/arginine-rich splicing factor 1b (Fragment) OS=Rhodnius neglectus OX=72488 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.565e-77
Identity = 133/220 (60.45%), Postives = 160/220 (72.73%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEE--KNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGXXXXXXXXXXNFKHRINGRKTPTYSPMRRCSPTYS 754
            ++YVGNLPPDIR +D+ DLFYKFGK+  +D+K+R+ PPFAF+EF+D RDAEDAV  R+GY+YDGYRLRVEFPRG   +    Y  R        L       P+RRS++RV V+GLPP+GSWQDLKDHMREAGDV  ADVF+DGTGV EFLR +DMKYA K LDD+KF+SHEGE SYIRV+ED        S  R+   R    +T +YSP RR SPTYS
Sbjct:    6 RIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRRGPPFAFVEFEDSRDAEDAVHARDGYDYDGYRLRVEFPRGGGPSG---YRARGGASVGSGLGARGRGPPARRSQYRVIVTGLPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYDDMKYAFKKLDDSKFRSHEGETSYIRVKEDYSGYGSRESNERSSGERGGRSRTRSYSPRRRGSPTYS 222
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. TrEMBL
Match: A0A2A3EDA7 (Splicing factor, arginine/serine-rich OS=Apis cerana cerana OX=94128 GN=APICC_05252 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.692e-77
Identity = 139/236 (58.90%), Postives = 174/236 (73.73%), Query Frame = 2 
Query:   71 MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT-RNTTS------APSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGXXXXXXXXXXNFKHRINGRK-TPTYSPMRRCSPTYS 754
            MS+ G  ++ ++YVGNLPPDIR +D+ DLFYKFGK++ +D+K+R+ PPFAF+EFDDPRDAEDAV  R+GY+YDGYRLRVEFPRG    + NF   R A +     R   S       P+RRS++RV V+GLPP+GSWQDLKDHMREAGDV  ADVF+DGTGV EFLR EDMKYA+K LDD++F+SHEGE++YIRV+ED      +       + R  GR  + +YSP RR SPTYS
Sbjct:    1 MSHGG-RNECRIYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYDYDGYRLRVEFPRGGGP-SNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTGLPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEVAYIRVKED-----HNSGDRGRSEDRERGRSHSRSYSPRRRGSPTYS 229
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. TrEMBL
Match: A0A088AS03 (Uncharacterized protein OS=Apis mellifera OX=7460 GN=LOC410040 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.692e-77
Identity = 139/236 (58.90%), Postives = 174/236 (73.73%), Query Frame = 2 
Query:   71 MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT-RNTTS------APSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGXXXXXXXXXXNFKHRINGRK-TPTYSPMRRCSPTYS 754
            MS+ G  ++ ++YVGNLPPDIR +D+ DLFYKFGK++ +D+K+R+ PPFAF+EFDDPRDAEDAV  R+GY+YDGYRLRVEFPRG    + NF   R A +     R   S       P+RRS++RV V+GLPP+GSWQDLKDHMREAGDV  ADVF+DGTGV EFLR EDMKYA+K LDD++F+SHEGE++YIRV+ED      +       + R  GR  + +YSP RR SPTYS
Sbjct:    1 MSHGG-RNECRIYVGNLPPDIRTKDIQDLFYKFGKVIFVDLKNRRGPPFAFVEFDDPRDAEDAVHARDGYDYDGYRLRVEFPRGGGP-SNNFRGGRGAGDSGRGGRGEMSNSRGRGPPARRSQYRVLVTGLPPSGSWQDLKDHMREAGDVCFADVFKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEVAYIRVKED-----HNSGDRGRSEDRERGRSHSRSYSPRRRGSPTYS 229
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. TrEMBL
Match: A0A131XCS1 (Putative alternative splicing factor asf/sf2 OS=Hyalomma excavatum OX=257692 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 6.552e-77
Identity = 134/222 (60.36%), Postives = 161/222 (72.52%), Query Frame = 2 
Query:   71 MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGXXXXXXXXXXNFKHRINGRKTPTYSPMRR 736
            MS+ G+  +  +YVGNLPPDIR +D++DLFYKFGKI  ID+K+R+ PPFAF+EFDDPRDAEDAV  R+GY+YDGYRLRVEFPRG+    G+    R              P+RRS++RV VSGLPP+GSWQDLKDHMREAGDV +ADVF+DGTGV EFLR EDMKYA+K LDD++F+SHEGE+SYIRV ED                    R +PTYSP RR
Sbjct:    1 MSFRGNECR--IYVGNLPPDIRSKDIEDLFYKFGKITFIDLKNRRGPPFAFVEFDDPRDAEDAVQARDGYDYDGYRLRVEFPRGSAPGRGSMGPGR----------GRGPPARRSQYRVLVSGLPPSGSWQDLKDHMREAGDVCYADVFKDGTGVVEFLRYEDMKYAVKKLDDSRFRSHEGEVSYIRVRED---YSSRSRSRSRSYSPRRSRGSPTYSPARR 207
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Cavefish
Match: srsf1a (serine and arginine rich splicing factor 1 [Source:NCBI gene;Acc:103029385])

HSP 1 Score: 217.624 bits (553), Expect = 5.507e-70
Identity = 114/184 (61.96%), Postives = 136/184 (73.91%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTT--SAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DI     R  PPFAF+EF+DPRDAEDAV  R+GY+YDGYRLRVEFPR         +                   PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGAGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKMD 199
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Cavefish
Match: srsf9 (serine/arginine-rich splicing factor 9 [Source:NCBI gene;Acc:103033517])

HSP 1 Score: 187.963 bits (476), Expect = 1.628e-58
Identity = 107/188 (56.91%), Postives = 136/188 (72.34%), Query Frame = 2 
Query:   89 LSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXP-PFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCG 649
            ++  ++YVGNLP D++ RD++DLF+K+GKI DI++K+ +   PFAF+ F+DPRDAEDAV GRNGY +   +LRVE+PR +                   R     PSRRSEFRV V+GLPPTGSWQDLKDHMREAGDV  ADV RDG GV EFLR EDM+YA++ LD T+F+SH+GE +YIRV E+ G
Sbjct:    1 MADGRIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRGTIPFAFVRFEDPRDAEDAVYGRNGYGFGDCKLRVEYPRSSGSK-----FGGSVGGGGGPRGRFGPPSRRSEFRVIVTGLPPTGSWQDLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDGTEFRSHQGETAYIRVLEERG 183
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Cavefish
Match: srsf1b (serine and arginine rich splicing factor 1b [Source:NCBI gene;Acc:393565])

HSP 1 Score: 162.54 bits (410), Expect = 5.142e-49
Identity = 88/153 (57.52%), Postives = 102/153 (66.67%), Query Frame = 2 
Query:  242 RDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEK-------------------NLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            RDAEDAV GR+GY+YDGYRLRVEFPR       + Y       +                      R     PSRRSE+RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   13 RDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRDGYDYDGYRLRVEFPRSGRGGGRGGVGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 165
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Cavefish
Match: srsf9 (serine/arginine-rich splicing factor 9 [Source:NCBI gene;Acc:103033517])

HSP 1 Score: 155.606 bits (392), Expect = 4.174e-46
Identity = 98/184 (53.26%), Postives = 125/184 (67.93%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXP-PFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCG 649
            ++YVGNLP D++ RD++DLF+K+GKI DI++K+ +   PFAF+ F+DPRDAEDAV GRNGY +   +LRVE+PR +    G              R     PSRRSEFRV V+G          KDHMREAGDV  ADV RDG GV EFLR EDM+YA++ LD T+F+SH+GE +YIRV E+ G
Sbjct:    5 RIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRGTIPFAFVRFEDPRDAEDAVYGRNGYGFGDCKLRVEYPRSSGSKFGG-----SVGGGGGPRGRFGPPSRRSEFRVIVTGR--------SKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDGTEFRSHQGETAYIRVLEERG 175
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Cavefish
Match: srsf4 (serine and arginine rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591])

HSP 1 Score: 96.2857 bits (238), Expect = 2.633e-23
Identity = 70/183 (38.25%), Postives = 105/183 (57.38%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADV--FRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++Y+G L   ++ +D++  F  +GKI+++D+K+     + F+EFDDPRDA+DAV   NG N  G R+ VE  +G   + GN  S R        R+    P+ R+++R+ V  L    SWQDLKD+MR+AG+V +AD    R   GV EF    DMK A++ LD T+    +     IR+ ED
Sbjct:    3 RIYIGKLSYRVKEKDVERFFKGYGKILEVDLKNG----YGFVEFDDPRDADDAVYDLNGKNLCGERVLVEHTKGPRRDGGN-NSGRSNWYGRGGRDRYGPPT-RTDYRLIVENLSSRCSWQDLKDYMRQAGEVTYADTNKGRRNEGVIEFRLYSDMKRALEKLDGTEVNGRK-----IRLIED 174
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010377.1 (pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene:ENSPMAG00000009397.1 transcript:ENSPMAT00000010377.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 86.2705 bits (212), Expect = 3.459e-20
Identity = 63/167 (37.72%), Postives = 88/167 (52.69%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRG-----NNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLD 586
            ++Y+GNL    R +D++  F  +GKIV+I IK      F F+EFDD RDA DAV   +G    G R+ +E  RG     +    G       +            P  R+++R+ V  +    SWQDLKD+MR+AG+V +ADV R   GV EFL   DM+ A+  LD
Sbjct:    3 RIYLGNLSYRARDKDIERFFKGYGKIVEISIKHG----FGFVEFDDTRDANDAVCELSGRELCGERVVIEHARGPKRDLHGYGGGGGGGGGGSSSSGGGYGGMHGPPPRTDYRLVVENVSSRCSWQDLKDYMRQAGEVTYADV-RGDEGVVEFLTYADMRRALDKLD 164
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Sea Lamprey
Match: SRSF5 (serine and arginine rich splicing factor 5 [Source:HGNC Symbol;Acc:HGNC:10787])

HSP 1 Score: 84.3445 bits (207), Expect = 2.677e-19
Identity = 65/183 (35.52%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:   89 LSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEF---PRGNNENAGNFY------------SNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFR--DGTGVCEFLRVEDMKYAIKHLD 586
            L   ++++  L P +R +D++  F  +GKI DIDIK      F F+EFDD RDA+DAV+  NG   +  R+ VE    PR   +    F                     + +      P  R++ R+ V  L  T SWQDLKD+MR+AG+V  AD  R     GV EF    DMK AI  L+
Sbjct:    2 LGCNRVFIARLGPHVRTKDVEKFFKGYGKIRDIDIKAG----FGFVEFDDCRDADDAVSDLNGRELNNERMTVEHARAPRARGDRMDTFVRRPSGPPPTYRPRGGGPSSSSASSGGRYGPPSRTDHRLVVENLSSTVSWQDLKDYMRQAGEVTFADAHRIHQNVGVVEFATRNDMKNAIDKLN 180
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008861.1 (pep scaffold:Pmarinus_7.0:GL476733:183781:191694:-1 gene:ENSPMAG00000008001.1 transcript:ENSPMAT00000008861.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 63.5438 bits (153), Expect = 1.177e-11
Identity = 59/173 (34.10%), Postives = 83/173 (47.98%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGN-----NENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDV--GHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKF 598
            +LY+G L      +D++     FGKIV+I +K+     +AF+E +D RDA+ AV   NG +  G  + VE  RG         A + +  R      L R     P  R+E+R+ V  L      + LKD +R AG+V  G A V RD  G  EF    DMK A+  LD  + 
Sbjct:    3 RLYLGKLSYKASEKDIERFLRGFGKIVEISLKNG----YAFVELEDGRDADSAVYELNGRDLCGDPVVVEHARGRPGGPLGVGASSIFGGRSG----LYR-----PPIRTEYRLVVENLSTRCDAEQLKDSLRRAGEVMYGEAHVERDNEGFVEFRTFVDMKRALDELDGMEL 162
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Sea Lamprey
Match: rbm4.2 (RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019])

HSP 1 Score: 51.2174 bits (121), Expect = 4.823e-8
Identity = 42/167 (25.15%), Postives = 69/167 (41.32%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFK 601
            K++VGN+P     R++ +LF + G++ + +        FAF+    P DAE A+    G+   G  L VE   G                              S  ++YV  + P  +  +L+    E G V   D+ +D   V    R +D + AI+ LD ++FK
Sbjct:    3 KIFVGNVPFQATKREIQELFEQHGEVTECEKIKD----FAFVHMSAPGDAERAIVALRGHRLHGAALDVEPSHGRGS---------------------------STTKMYVGNVTPDCTNVELRAKFEEFGPVAECDIVKDYAFV-HMEREDDARAAIRALDGSEFK 137
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Sea Lamprey
Match: srsf3a (serine and arginine rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631])

HSP 1 Score: 48.9062 bits (115), Expect = 1.730e-7
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAG 340
            K+YVGNL  +    +L+  F  +G +  + +     P FAF+EF+DPRDA DAV   +G    G R+RVE   G + N G
Sbjct:   16 KVYVGNLGNNGNKAELERSFSYYGPLRSVWVARAP-PGFAFVEFEDPRDAGDAVRELDGRTLCGSRVRVEHSSGRSRNRG 94
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Yeast
Match: NPL3 (RNA-binding protein; promotes elongation, regulates termination, and carries poly(A) mRNA from nucleus to cytoplasm; represses translation initiation by binding eIF4G; required for pre-mRNA splicing; interacts with E3 ubiquitin ligase Bre1p, linking histone ubiquitination to mRNA processing; may have role in telomere maintenance; dissociation from mRNAs promoted by Mtr10p; phosphorylated by Sky1p in cytoplasm; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000002840])

HSP 1 Score: 59.6918 bits (143), Expect = 1.057e-10
Identity = 52/191 (27.23%), Postives = 89/191 (46.60%), Query Frame = 2 
Query:   83 GDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMRE-AGDVGHADVFR---DGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            G+LS  +L+V   P D++  +L+++F  FG + ++ I +     FAF+EF++   A  A+   +G ++    L V +                          +  P++R  +R+ +  LP   SWQDLKD  RE + +   + V     DGTG  EF   E +  A++ L++ +F+      S I VE D
Sbjct:  120 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNG----FAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY--------------------------SKLPAKR--YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG-----SVITVERD 273
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Yeast
Match: HRB1 (Poly(A+) RNA-binding protein; key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm; preference for intron-containing genes; similar to Npl3p; HRB1 has a paralog, GBP2, that arose from the whole genome duplication [Source:SGD;Acc:S000004949])

HSP 1 Score: 55.8398 bits (133), Expect = 2.186e-9
Identity = 54/168 (32.14%), Postives = 77/168 (45.83%), Query Frame = 2 
Query:  104 LYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXX--XPPFAFIEFDDPRDAEDAVTGRNGYNYDG--YRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGV------CEFLRVEDMKYAIK 577
            ++VGNL  D    DL + F + GK+V  DI   +        +EF +  D + A+       YDG  +  R  F R +N    N    RKA ++   R+       R    V V  LP + +WQ LKD  +E G+V HADV  DG GV        F  ++D+  AI+
Sbjct:  163 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIR-----QYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHN------RKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIE 319
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Nematostella
Match: EDO44646 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RVI6])

HSP 1 Score: 211.075 bits (536), Expect = 2.332e-68
Identity = 112/184 (60.87%), Postives = 137/184 (74.46%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXX--XXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDC 646
            ++YVGNLP D+R +DL D+FYK+G I D+D+K+R    PPFAF+EF+DPRDAEDAV GR+G+ +DGYR+RVEFPRG                       +  P RRS+FRV VSGLPPTGSWQDLKDHMREAGDV   DVF+DGTGV EF R +DMK+AI++LDD+KF+SHEGE SYIRV+ D 
Sbjct:   10 RVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGG----------------------SGPPPRRSDFRVQVSGLPPTGSWQDLKDHMREAGDVLFTDVFKDGTGVVEFARYDDMKFAIRNLDDSKFRSHEGETSYIRVKSDL 171
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Nematostella
Match: EDO32443 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SV28])

HSP 1 Score: 92.8189 bits (229), Expect = 5.607e-23
Identity = 64/168 (38.10%), Postives = 92/168 (54.76%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKF 598
            ++Y G LP D R RDL+     +G++ +I +K      + F+EFDD RDA+D V   NG N  G R+ VE  R N     ++   R +  ++ +      P  R+E R+ V  L    +WQDLK++M + G+V  AD    R G GV EF   +DMK A+K LDDT+F
Sbjct:    6 RVYFGRLPRDCRERDLEKFVRGYGRVREISMKLG----YGFVEFDDYRDADDCVYDLNGRNLLGERVVVEHSR-NPSRGSDYGYRRDSSSRSRSSRRGRTPPIRTEHRLAVENLSSRSNWQDLKEYMGKVGEVTFADAHKRRQGEGVVEFATKDDMKTALKKLDDTEF 168
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Nematostella
Match: EDO39290 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAJ5])

HSP 1 Score: 89.3521 bits (220), Expect = 1.300e-21
Identity = 70/187 (37.43%), Postives = 97/187 (51.87%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRK----AEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++++G LP D+R  D++     +GKI DI +K      + F+EFDD RDAEDAV   NG +  G R+ VEF +G     G    +R+       ++  R     P  R+ + V V  L    SWQDLKD+ R+ G V +AD    R G GV EF   +D+  AI+ LDDT+          IRV ED
Sbjct:    3 RIFLGRLPRDVRESDVEKFLRGYGKIRDISLKR----GYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGRRSEGGG--RDRRDFSGRGGRDGGRRPIYGPPVRTNYSVIVENLSSRTSWQDLKDYFRKYGKVTYADAHKKRIGEGVVEFESKDDLNTAIEKLDDTELGGRR-----IRVYED 178
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Nematostella
Match: EDO47549 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RM69])

HSP 1 Score: 87.0409 bits (214), Expect = 5.396e-21
Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVF--RDGTGVCEFLRVEDMKYAIKHLDDTKFK 601
            ++Y+G LP   R  D+   FY +G+    +I  +    + F+EFD   DAEDAV   NG    G R+ VE  RG ++  G + S R+   ++        P  R+ +R+ V  L    SWQDLKD+ R+ GDV + D    + G GV EF   +D+K A++ LD  + K
Sbjct:    4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDG--YGFVEFDYSDDAEDAVYECNGKKMLGERILVEPARGTSK--GGYSSGRRGRARD-----KYGPPLRTPWRMTVENLSSRVSWQDLKDYCRQIGDVTYGDAHKQKQGEGVIEFATKKDLKKALRKLDGKELK 163
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Nematostella
Match: EDO31620 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SXE8])

HSP 1 Score: 83.1889 bits (204), Expect = 1.816e-19
Identity = 58/168 (34.52%), Postives = 83/168 (49.40%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRD--GTGVCEFLRVEDMKYAIKHLDDTKF 598
            K+Y G LP     +DL++L   FGK+ ++D K+     +A++ F + +DA+ AV   N   + G ++ +E  +      G +     A      R     P  RSEFRV V  L     W +LK+ M  AG+V +AD  R   G GV EF   EDMK AI  LD  +F
Sbjct:    4 KVYCGRLPATATEKDLENLVKVFGKVREVDFKEG----YAYVVFKENKDADRAVAALNNSEFHGAKILMEKAKEMRNGVGGY----TAAGGYTARTRQMGPPVRSEFRVIVENLSTRAKWLELKEFMNNAGEVCYADTHRRRPGEGVVEFTTEEDMKRAIASLDKCEF 163
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Medaka
Match: ENSORLT00000006699.2 (serine/arginine-rich splicing factor 1B [Source:NCBI gene;Acc:101171767])

HSP 1 Score: 218.779 bits (556), Expect = 1.859e-70
Identity = 117/182 (64.29%), Postives = 137/182 (75.27%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++DLFYK+G I DI     R  PPFAF++F+DPRDAEDAV GR+GY+YDGYRLRVEFPR      G              R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   16 RIYVGNLPPDIRSKDVEDLFYKYGSIRDIDLKNRRGGPPFAFVQFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGGG--GGGGGGGMGPPRGRYGPPSRRSENRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKTD 195
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Medaka
Match: srsf1a (serine/arginine-rich splicing factor 1 [Source:NCBI gene;Acc:101162697])

HSP 1 Score: 214.542 bits (545), Expect = 5.760e-69
Identity = 119/182 (65.38%), Postives = 145/182 (79.67%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXX-PPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++YVGNLPPDIR +D++D+FYK+G I DID+K+R+  PPFAFIEF+DPRDA+DAV GR+GY+YDGYRLRVEFPR    + G F     A      R     PSRRSE+RV VSGLP +GSWQDLKDHMREAGDV +ADV+RDGTGV EF+R EDM YA++ LD+TKF+SHEGE +YIRV+ D
Sbjct:   15 RIYVGNLPPDIRTKDVEDVFYKYGTIRDIDLKNRRGGPPFAFIEFEDPRDADDAVYGRDGYDYDGYRLRVEFPRSGRGSRGGFGGIGGA-----PRGRYGPPSRRSEYRVVVSGLPQSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKLD 191
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Medaka
Match: ENSORLT00000038036.1 (serine/arginine-rich splicing factor 1B [Source:NCBI gene;Acc:101171767])

HSP 1 Score: 205.682 bits (522), Expect = 2.132e-65
Identity = 110/171 (64.33%), Postives = 129/171 (75.44%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXX-XXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHE 610
            ++YVGNLPPDIR +D++DLFYK+G I DI     R  PPFAF++F+DPRDAEDAV GR+GY+YDGYRLRVEFPR  +   G              R     PSRRSE RV VSGLPP+GSWQDLKDHMREAGDV +ADVFRDGTGV EF+R EDM YA++ LD+TKF+SHE
Sbjct:   16 RIYVGNLPPDIRSKDVEDLFYKYGSIRDIDLKNRRGGPPFAFVQFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--SGRGGGGGGGGGGGGMGPPRGRYGPPSRRSENRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 184
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Medaka
Match: srsf9 (serine/arginine-rich splicing factor 9 [Source:NCBI gene;Acc:101164733])

HSP 1 Score: 195.667 bits (496), Expect = 1.359e-61
Identity = 106/188 (56.38%), Postives = 134/188 (71.28%), Query Frame = 2 
Query:   89 LSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXP-PFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCG 649
            ++  ++Y+GNLP D++ RD++DLF+K+GKI +I++K+ +   PFAFI F+DPRDA+DAV GRNGY Y   +LRVE+PR                           P+RRSEFRV V+GLPPTGSWQDLKDHMREAGDV  ADV RDG GV EFLR EDM+YA++ LD T+F+SH+GE SYIRV ED G
Sbjct:    1 MTDGRIYIGNLPIDVQERDIEDLFFKYGKIREIELKNNRGTIPFAFIRFEDPRDADDAVYGRNGYVYGNSKLRVEYPRSTGGKPTPMGPGGAGPRGRF-----GPPTRRSEFRVIVTGLPPTGSWQDLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDRTEFRSHQGETSYIRVFEDRG 183
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Medaka
Match: srsf9 (serine/arginine-rich splicing factor 9 [Source:NCBI gene;Acc:101164733])

HSP 1 Score: 180.259 bits (456), Expect = 1.662e-55
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 2 
Query:   80 SGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXP-PFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHE 610
            S  ++  ++Y+GNLP D++ RD++DLF+K+GKI +I++K+ +   PFAFI F+DPRDA+DAV GRNGY Y   +LRVE+PR                           P+RRSEFRV V+GLPPTGSWQDLKDHMREAGDV  ADV RDG GV EFLR EDM+YA++ LD T+F+SH+
Sbjct:    8 SSTMTDGRIYIGNLPIDVQERDIEDLFFKYGKIREIELKNNRGTIPFAFIRFEDPRDADDAVYGRNGYVYGNSKLRVEYPRSTGGKPTPMGPGGAGPRGRF-----GPPTRRSEFRVIVTGLPPTGSWQDLKDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDRTEFRSHQ 180
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Planmine SMEST
Match: SMESG000077573.1 (SMESG000077573.1)

HSP 1 Score: 428.328 bits (1100), Expect = 1.791e-153
Identity = 238/239 (99.58%), Postives = 239/239 (100.00%), Query Frame = 2 
Query:   71 MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGXXXXXXXXXXNFKHRINGRKTPTYSPMRRCSPTYSNYXXXXXXXHT 787
            MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGKIVDIDIKDRKKPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCG+KCRSRSKSRNFKHRINGRKTPTYSPMRRCSPTYSNYSRSRSRSHT
Sbjct:    1 MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGKIVDIDIKDRKKPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGKKCRSRSKSRNFKHRINGRKTPTYSPMRRCSPTYSNYSRSRSRSHT 239
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Planmine SMEST
Match: SMESG000075205.1 (SMESG000075205.1)

HSP 1 Score: 164.851 bits (416), Expect = 1.054e-49
Identity = 91/196 (46.43%), Postives = 132/196 (67.35%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNF---------------YSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            K+YVGNLP DIR  +++ +F K+G+I D+D+K+R +  FAF+E++  RDAEDA+ GRN Y Y+G+ L+VE  +G+  + G                 Y +R +   N  +      S+ +EFRV VSGLP + SWQDLKDHM+ AGDV +ADVFRDGTGVC++L  +D+KYA+K LDD++ K++ G++  IR+E D
Sbjct:    8 KVYVGNLPSDIRANEVESVFKKYGRIKDVDVKNRAESSFAFVEYESSRDAEDAIHGRNNYRYEGHTLKVEMSKGSGSDRGGRRGSGGGGYRGSYNGRYDDRNSGSGNRPK-AFGTKSKSTEFRVRVSGLPQSASWQDLKDHMKAAGDVSYADVFRDGTGVCDYLNEDDLKYALKTLDDSELKTYRGDVGRIRLERD 202
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Planmine SMEST
Match: SMESG000013050.1 (SMESG000013050.1)

HSP 1 Score: 162.155 bits (409), Expect = 4.263e-48
Identity = 94/224 (41.96%), Postives = 133/224 (59.38%), Query Frame = 2 
Query:   92 SKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT----------------------------------------RNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEED 643
            ++RK+YVGNLPPD   RD++ LF  FGKI+DIDIK+R  PPFAFI+FDD RDAEDA+  R+ Y+ DG+ LRVEFPR   +N  ++    + E                                             +N    P + +++RV++S +PP  +WQD+KD MR  GDV +ADVF +GTGVC+F+  ED +Y +K++++ KFK+  G+ SYI+VEED
Sbjct:    3 NERKIYVGNLPPDSTSRDIEKLFSCFGKIIDIDIKNRNGPPFAFIQFDDRRDAEDAIRERDNYDLDGFSLRVEFPREIKQNKKDYKEYSRFENPVYVPPFDPYDMYLPYNYGPFPRQDRFSYYGDYRRNNNYGNYSYQNRRPRPPKSTDYRVFISNIPPYSNWQDIKDFMRRYGDVSYADVFGNGTGVCDFVSKEDFRYVLKYVNNVKFKTVSGQTSYIKVEED 226
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Planmine SMEST
Match: SMESG000013050.1 (SMESG000013050.1)

HSP 1 Score: 146.362 bits (368), Expect = 1.013e-42
Identity = 86/211 (40.76%), Postives = 123/211 (58.29%), Query Frame = 2 
Query:   92 SKRKLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEEKNLT----------------------------------------RNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFRDGTGVCEFLRVEDMKYAIKHLDDTKFKS 604
            ++RK+YVGNLPPD   RD++ LF  FGKI+DIDIK+R  PPFAFI+FDD RDAEDA+  R+ Y+ DG+ LRVEFPR   +N  ++    + E                                             +N    P + +++RV++S +PP  +WQD+KD MR  GDV +ADVF +GTGVC+F+  ED +Y +K++++ KFK+
Sbjct:    3 NERKIYVGNLPPDSTSRDIEKLFSCFGKIIDIDIKNRNGPPFAFIQFDDRRDAEDAIRERDNYDLDGFSLRVEFPREIKQNKKDYKEYSRFENPVYVPPFDPYDMYLPYNYGPFPRQDRFSYYGDYRRNNNYGNYSYQNRRPRPPKSTDYRVFISNIPPYSNWQDIKDFMRRYGDVSYADVFGNGTGVCDFVSKEDFRYVLKYVNNVKFKT 213
[Close]
BLAST of serine/arginine-rich splicing factor 1B vs. Planmine SMEST
Match: SMESG000045501.1 (SMESG000045501.1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.485e-20
Identity = 69/181 (38.12%), Postives = 91/181 (50.28%), Query Frame = 2 
Query:  101 KLYVGNLPPDIRHRDLDDLFYKFGXXXXXXXXXXXXPPFAFIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGN-----------------NENAGNFYSNRKAEEKNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADV--FRDGTGVCEFLRVEDMKYAIKHLD 586
            +LYVGNLP  I  RD+   F ++G+I  +DIK+     + F+E DD RDAEDAV   +G    G R+ VE  R N                  +N  N Y +R + ++  +R        RSE R+ V+ L    SWQDLKD MR+ G+V  AD    R   GV EF    DMK AI+  D
Sbjct:    3 RLYVGNLPRRIEERDIKKFFREYGRIRSVDIKNG----YGFVEIDDRRDAEDAVHDLDGSKLLGERVTVEMARSNARFGGDRGSGGDRGGRGFDNRNNRYDSRDSRDRYNSRKPI-----RSEHRIIVNDLSSRVSWQDLKDLMRKVGEVTFADAHKLRPNQGVVEFSNSSDMKAAIEKYD 174
The following BLAST results are available for this feature:
BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SRSF11.754e-6864.29serine and arginine rich splicing factor 1 [Source... [more]
SRSF12.077e-6863.19serine and arginine rich splicing factor 1 [Source... [more]
AC015813.23.422e-6462.57novel transcript[more]
SRSF13.422e-6462.57serine and arginine rich splicing factor 1 [Source... [more]
SRSF13.422e-6462.57serine and arginine rich splicing factor 1 [Source... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rsp-34.043e-5752.55Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-34.043e-5752.55Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-34.043e-5752.55Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-34.043e-5752.55Probable splicing factor, arginine/serine-rich 3 ... [more]
rsp-34.043e-5752.55Probable splicing factor, arginine/serine-rich 3 ... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
SF24.143e-7058.95gene:FBgn0283477 transcript:FBtr0083272[more]
SF24.143e-7058.95gene:FBgn0283477 transcript:FBtr0304727[more]
B523.388e-2439.23gene:FBgn0004587 transcript:FBtr0082802[more]
B525.675e-2439.23gene:FBgn0004587 transcript:FBtr0308197[more]
B525.675e-2439.23gene:FBgn0004587 transcript:FBtr0308195[more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf1b1.178e-6963.74serine and arginine rich splicing factor 1b [Sourc... [more]
srsf1a4.066e-6964.29serine and arginine rich splicing factor 1a [Sourc... [more]
srsf1a4.362e-6961.90serine and arginine rich splicing factor 1a [Sourc... [more]
srsf1a4.362e-6961.90serine and arginine rich splicing factor 1a [Sourc... [more]
srsf1a8.245e-6564.33serine and arginine rich splicing factor 1a [Sourc... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
tent5a7.295e-6959.09terminal nucleotidyltransferase 5A [Source:Xenbase... [more]
tent5a1.099e-6859.09terminal nucleotidyltransferase 5A [Source:Xenbase... [more]
lhx31.587e-6158.01LIM homeobox 3 [Source:Xenbase;Acc:XB-GENE-490075][more]
srsf61.358e-1937.87serine/arginine-rich splicing factor 6 [Source:NCB... [more]
srsf59.309e-1938.37serine/arginine-rich splicing factor 5 [Source:NCB... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Srsf11.204e-6864.29serine/arginine-rich splicing factor 1 [Source:MGI... [more]
Srsf11.204e-6864.29serine/arginine-rich splicing factor 1 [Source:MGI... [more]
Srsf11.426e-6863.19serine/arginine-rich splicing factor 1 [Source:MGI... [more]
Srsf11.426e-6863.19serine/arginine-rich splicing factor 1 [Source:MGI... [more]
Srsf18.556e-6463.16serine/arginine-rich splicing factor 1 [Source:MGI... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q5ZML3|SRSF1_CHICK1.559e-6964.84Serine/arginine-rich splicing factor 1 OS=Gallus g... [more]
sp|Q6NYA0|SRS1B_DANRE8.889e-6963.74Serine/arginine-rich splicing factor 1B OS=Danio r... [more]
sp|Q7SXP4|SRS1A_DANRE3.293e-6861.90Serine/arginine-rich splicing factor 1A OS=Danio r... [more]
sp|Q6DII2|SRSF1_XENTR5.824e-6859.09Serine/arginine-rich splicing factor 1 OS=Xenopus ... [more]
sp|Q5R7H2|SRSF1_PONAB9.976e-6863.19Serine/arginine-rich splicing factor 1 OS=Pongo ab... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A023FXP33.262e-7760.81Putative alternative splicing factor asf/sf2 rrm s... [more]
A0A0P4VNT03.565e-7760.45Putative serine/arginine-rich splicing factor 1b (... [more]
A0A2A3EDA75.692e-7758.90Splicing factor, arginine/serine-rich OS=Apis cera... [more]
A0A088AS035.692e-7758.90Uncharacterized protein OS=Apis mellifera OX=7460 ... [more]
A0A131XCS16.552e-7760.36Putative alternative splicing factor asf/sf2 OS=Hy... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
srsf1a5.507e-7061.96serine and arginine rich splicing factor 1 [Source... [more]
srsf91.628e-5856.91serine/arginine-rich splicing factor 9 [Source:NCB... [more]
srsf1b5.142e-4957.52serine and arginine rich splicing factor 1b [Sourc... [more]
srsf94.174e-4653.26serine/arginine-rich splicing factor 9 [Source:NCB... [more]
srsf42.633e-2338.25serine and arginine rich splicing factor 4 [Source... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSPMAT00000010377.13.459e-2037.72pep scaffold:Pmarinus_7.0:GL481287:28:8451:-1 gene... [more]
SRSF52.677e-1935.52serine and arginine rich splicing factor 5 [Source... [more]
ENSPMAT00000008861.11.177e-1134.10pep scaffold:Pmarinus_7.0:GL476733:183781:191694:-... [more]
rbm4.24.823e-825.15RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB... [more]
srsf3a1.730e-740.00serine and arginine rich splicing factor 3a [Sourc... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
NPL31.057e-1027.23RNA-binding protein; promotes elongation, regulate... [more]
HRB12.186e-932.14Poly(A+) RNA-binding protein; key surveillance fac... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO446462.332e-6860.87Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO324435.607e-2338.10Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO392901.300e-2137.43Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO475495.396e-2134.91Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO316201.816e-1934.52Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000006699.21.859e-7064.29serine/arginine-rich splicing factor 1B [Source:NC... [more]
srsf1a5.760e-6965.38serine/arginine-rich splicing factor 1 [Source:NCB... [more]
ENSORLT00000038036.12.132e-6564.33serine/arginine-rich splicing factor 1B [Source:NC... [more]
srsf91.359e-6156.38serine/arginine-rich splicing factor 9 [Source:NCB... [more]
srsf91.662e-5554.49serine/arginine-rich splicing factor 9 [Source:NCB... [more]
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BLAST of serine/arginine-rich splicing factor 1B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000077573.11.791e-15399.58SMESG000077573.1[more]
SMESG000075205.11.054e-4946.43SMESG000075205.1[more]
SMESG000013050.14.263e-4841.96SMESG000013050.1[more]
SMESG000013050.11.013e-4240.76SMESG000013050.1[more]
SMESG000045501.11.485e-2038.12SMESG000045501.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009996 ID=SMED30009996|Name=serine/arginine-rich splicing factor 1B|organism=Schmidtea mediterranea sexual|type=transcript|length=858bp
TTTCATAGGTCTATATTTATTATTTTATACTTTAAATTATTTTGATCTAA
CGTTCATTGCTTAGCATTTTATGTCTTATTCCGGAGATTTAAGTAAGAGA
AAATTGTATGTTGGTAATCTTCCACCTGATATAAGACATCGTGATCTTGA
TGATTTATTTTATAAATTTGGGAAAATTGTCGATATAGATATAAAAGATA
GAAAAAAACCGCCATTTGCTTTTATTGAATTTGATGATCCTAGAGATGCG
GAAGATGCTGTTACTGGACGCAATGGTTATAATTATGATGGCTATCGATT
GAGAGTCGAATTTCCCAGAGGAAATAACGAAAACGCTGGTAACTTTTATA
GTAATCGCAAAGCTGAAGAAAAAAATTTAACTCGTAATACAACTTCTGCT
CCATCTAGACGTTCCGAATTTAGAGTATACGTTTCCGGACTTCCTCCTAC
AGGTAGTTGGCAAGATTTAAAAGACCATATGAGGGAAGCTGGTGATGTTG
GCCATGCTGACGTTTTTAGAGACGGCACGGGGGTTTGTGAATTCCTCAGA
GTAGAAGATATGAAATATGCTATCAAACATCTAGATGATACAAAATTTAA
GTCACACGAGGGAGAAATATCATATATTAGAGTTGAAGAAGATTGTGGAA
GGAAATGTAGATCGCGGTCTAAATCTCGAAATTTTAAACATCGGATAAAT
GGGAGGAAGACACCTACATATTCACCAATGCGAAGATGTTCCCCTACATA
TTCTAATTATTCTAGGTCACGATCTAGATCACACACTTAATATATTCCTT
GGAAATCATTTTGACTTTGTTGTACACATGACTGTAATATCTGCCACTGT
TATTTAAT
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protein sequence of SMED30009996-orf-1

>SMED30009996-orf-1 ID=SMED30009996-orf-1|Name=SMED30009996-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=240bp
MSYSGDLSKRKLYVGNLPPDIRHRDLDDLFYKFGKIVDIDIKDRKKPPFA
FIEFDDPRDAEDAVTGRNGYNYDGYRLRVEFPRGNNENAGNFYSNRKAEE
KNLTRNTTSAPSRRSEFRVYVSGLPPTGSWQDLKDHMREAGDVGHADVFR
DGTGVCEFLRVEDMKYAIKHLDDTKFKSHEGEISYIRVEEDCGRKCRSRS
KSRNFKHRINGRKTPTYSPMRRCSPTYSNYSRSRSRSHT*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 118..184
e-value: 3.5E-9
score: 46.5
coord: 11..80
e-value: 1.0E-20
score: 84.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 119..180
e-value: 3.0E-12
score: 46.2
coord: 12..78
e-value: 6.1E-19
score: 67.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..84
score: 17.813
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 117..191
score: 10.599
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 3..91
e-value: 1.3E-24
score: 88.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 116..192
e-value: 2.9E-25
score: 90.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..239
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 10..237
NoneNo IPR availablePANTHERPTHR23003:SF27NUCLEOLAR PROTEIN 3coord: 10..237
NoneNo IPR availableCDDcd12601RRM2_SRSF1_likecoord: 117..190
e-value: 1.2985E-47
score: 149.941
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 9..186