SMED30009984

Overview
NameSMED30009984
Smed IDSMED30009984
Length (bp)2353
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009984 (SMED30009984) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009984 (SMED30009984) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009984 (SMED30009984) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009984 (SMED30009984) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30009984

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
headSMED30009984SMESG000008847.1 SmedASXL_007311SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
headSMED30009984SMESG000008847.1 SmedASXL_007310SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
neuronSMED30009984SMESG000008847.1 dd_Smed_v4_22463_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
whole organism asexual adult single-cell RNA-sequencing evidence
headSMED30009984SMESG000008847.1 dd_Smed_v6_22463_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009984 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003935:2151..17374 +9626
Homology
BLAST of SMED30009984 vs. Planmine SMEST
Match: SMESG000008847.1 (SMESG000008847.1)

HSP 1 Score: 1345.1 bits (3480), Expect = 0.000e+0
Identity = 678/684 (99.12%), Postives = 678/684 (99.12%), Query Frame = 1
Query:  154 MPGNLTRDYMPXXXXXXXXXXXXXCGLVFVICAVVLCKFCYEKQKSKTGIADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKAENNFFRFDSDLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQSVSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLTNKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQNIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKEXXXXXXXXGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKLSAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP 2205
            MPGNLTRDYMPALLISLVLLASIICGLVFVICAVVLCKFCYEKQKSKTGIADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKA      FDSDLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQSVSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLTNKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQNIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKERRVRRRVRGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKLSAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP
Sbjct:    1 MPGNLTRDYMPALLISLVLLASIICGLVFVICAVVLCKFCYEKQKSKTGIADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKA------FDSDLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQSVSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLTNKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQNIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKERRVRRRVRGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKLSAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP 678          
BLAST of SMED30009984 vs. Planmine SMEST
Match: SMESG000008847.1 (SMESG000008847.1)

HSP 1 Score: 1326.61 bits (3432), Expect = 0.000e+0
Identity = 669/675 (99.11%), Postives = 669/675 (99.11%), Query Frame = 1
Query:  181 MPXXXXXXXXXXXXXCGLVFVICAVVLCKFCYEKQKSKTGIADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKAENNFFRFDSDLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQSVSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLTNKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQNIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKEXXXXXXXXGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKLSAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP 2205
            MPALLISLVLLASIICGLVFVICAVVLCKFCYEKQKSKTGIADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKA      FDSDLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQSVSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLTNKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQNIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKERRVRRRVRGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKLSAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP
Sbjct:    1 MPALLISLVLLASIICGLVFVICAVVLCKFCYEKQKSKTGIADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKA------FDSDLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQSVSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLTNKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQNIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKERRVRRRVRGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKLSAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP 669          
BLAST of SMED30009984 vs. Planmine SMEST
Match: SMESG000068265.1 (SMESG000068265.1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.167e-12
Identity = 52/154 (33.77%), Postives = 80/154 (51.95%), Query Frame = 1
Query: 1645 TVDPSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSENWKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRKSTCSPIKVNDQNRLR-----LEYTKSASFASKEDFQN---YSNTKEEEFDA 2082
            + D  L  +SA  KR QF +E+               ++ NS  T   + S    + KQ +ERDYS+DE++S IF EF+R DP LDKN+M+  + +++R++R  +      N QNR R     +E  KSASF   +       ++N+ E + DA
Sbjct:  330 SCDSDLCFKSATVKRKQFYKEK---------------IKPNSTATQYIQCS----SAKQSIERDYSIDEKSSTIFKEFLRNDPNLDKNIMEENVRKRLRSERGYS----HHNSQNRKRSKARVIESFKSASFTDGDSHPQTNIHTNSIESQIDA 460          

HSP 2 Score: 64.3142 bits (155), Expect = 1.775e-10
Identity = 47/119 (39.50%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  721 NSNSLQITQAVVRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESLNQGQCLVTPATQRRGSHHLRPFDTHWGN-SKLSHSMELVSSKPTITS--DERKVHSFD 1068
            N + L + Q+  RRFSDNSPYKD +       +R RS SQI   + +   P      N++ N    +    + R+ S HLRPFD    N +K+SHSME ++         DERKVHSFD
Sbjct:  103 NGSHLSVLQSPNRRFSDNSPYKDGKLGPQ---TRPRSVSQIVTCHSIRGEP------NKTSNP---ISVVDSYRKNSFHLRPFDLASSNKTKISHSMEFINHNKASYDQVDERKVHSFD 209          
BLAST of SMED30009984 vs. Planmine SMEST
Match: SMESG000076697.1 (SMESG000076697.1)

HSP 1 Score: 58.151 bits (139), Expect = 2.034e-8
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  892 NESLNQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERKVHSFD 1068
            N+  N    +V P   RR S HLRPFDTHWG++ LS S +L+ S+  I+++ RK +SFD
Sbjct:  188 NQKSNNMYHIVPPTDYRRNSQHLRPFDTHWGSNTLSRSFDLMPSQ-NISNESRKTYSFD 245          
The following BLAST results are available for this feature:
BLAST of SMED30009984 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009984 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000008847.10.000e+099.12SMESG000008847.1[more]
SMESG000008847.10.000e+099.11SMESG000008847.1[more]
SMESG000068265.17.167e-1233.77SMESG000068265.1[more]
SMESG000076697.12.034e-847.46SMESG000076697.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009984 ID=SMED30009984|Name=SMED30009984|organism=Schmidtea mediterranea sexual|type=transcript|length=2353bp
TAGAAAATTCGCATTTGAAATTGATGATTTAAAATAAAATATTGTAGAAA
TAGTATTTAATTGTATCATTGTTGTTTTGTTTTGCAATTATTGAATTTTA
TGTTCTACACGAAAAAAAAAATGGGAAAACTTTCGAATTATTAAAAAGGA
AAAATGCCTGGAAACCTCACAAGAGACTACATGCCGGCGTTGTTGATCTC
TCTGGTATTGTTGGCCAGCATCATTTGTGGATTGGTTTTCGTCATCTGTG
CCGTCGTGCTTTGTAAGTTCTGTTACGAGAAACAAAAAAGCAAAACCGGA
ATCGCAGACGATCGTAAAGAAATCACAAGAAATCGCAGACTGCCTTCAGA
AGACATTAGACTATGCAGAAAACTTCTAAGTTTGTCAGAAGTAACAAAAC
CATCAGAAAAAATAATTCTAAAAGCAGAAAATAATTTCTTTAGATTCGAC
TCAGATTTAGATTCTTCTGAAAGCAATCATGCCTCCCATATTGACGCGGG
TGTTCAAACAGATGAAAGCAGTTTTCTTCAAAACGAATTCGATTTTAAAT
ATCAGATTTCCGACTGTACAAATACAATATCAAATCAAGATAAAAATCAA
TCGGTAAGCAGTCAGAAAATTGACAGATTTTCAAATACATCTCAAAACCA
ATTTAAAAAGCCTCCTCATTCGAAGTCACGAGTAAAAGTTCAAATACAAA
ACTATATAACACCAAATACGAATTCAAATTCCTTGCAAATAACTCAAGCT
GTAGTTAGGAGATTTAGTGATAACAGTCCGTACAAAGATGATGAAGCTCT
TGAAACCGAAAATTACAGCCGAGGTAGATCTGCGTCTCAAATCCCTCGGA
CTTATAAAATGTCTCCAACACCATCTATTATTCGAATAAATAACGAAAGC
TTAAATCAAGGTCAATGTTTAGTGACTCCTGCTACTCAGAGACGAGGATC
ACATCATTTAAGACCTTTTGACACCCACTGGGGAAACAGTAAATTATCTC
ACAGTATGGAGTTAGTTTCAAGTAAACCAACGATTACTTCAGATGAACGA
AAAGTGCATAGTTTTGACAATGCACTTGGAAGGCGGAGAGCTATTTCGTC
TCAAGGAGCACTTTTTCAGGCTAAGAGTTTAACAATGAGTAATTCCGATG
AAGCAGCAAGCAGCAGTTTAGAGGAACCTCACAATCAACCACTATTATTA
ACAAATAAAAGTGAAGAAAAATACCAAGATAGAATGCAGTCCCCTAAACT
ATCTCGTAGAAATGAATTACCATTAAATGAGATTGTAGTTTATAATTTCT
CAAATAAAATGCCAACAAATAATGTCAAAGATTATAAACAGCATTCATAT
CAAAATATAATGGAATGTCCATATAAAGACAGCTATAAAGCCAGGAAAAG
TTATGTTGGAGAATTCAATGCCAATCCTGAACTGATTACTGATTGTAGAA
TGACAAACAAAAAGTCCTCGCCTAATAAAGAAAGAAGAGTCCGTAGACGT
GTGAGAGGAATATCAAGTCGTACTCAATCGAGCAAGGACTCAATAACGAT
AAACGTAATTGATTCTGATACGGAAAAACAACTCCTGCATGAAGAAATTC
AGCAAGATGGACCTCGGAATTCACTTTGTGATTTCTATAATTCTACAGTT
GATCCTAGTTTATCACCGAGAAGTGCTGCCGCTAAACGACATCAATTTAG
CAGAGAAAGACAATCATTAATCCAAGTTGGAGACATAACAGAATTTCAAC
AAATGATGGAAGCAAATTCAAAGCAAACTACCTCCTCGAAAGATTCCGAA
AATTGGAAAAATACTAAACAGTTTCTTGAAAGAGATTACAGTGTTGATGA
AAGAACGAGTGCAATATTCAACGAATTTATGAGGCCTGATCCAAAACTTG
ACAAAAATGTCATGAAAGCTCAAATTCTGGAAAAGATTAGAACCCAACGA
AAAAGTACATGTTCACCAATAAAGGTTAATGATCAAAATCGCCTAAGATT
AGAATACACAAAGTCTGCAAGTTTTGCCAGTAAAGAAGATTTTCAAAATT
ACTCAAACACTAAAGAGGAAGAGTTTGATGCTCATTTAAACTTTCCAAAG
CTGTCTGCCTACCAACAACGCCGTCAATCCATTGGGAAATTGAAAGTCCA
ATCTTTTGACCAGAGAATGCAACTCCCAGTTATCATACTACCTGACGAGT
CACCTTAATTTGCTCAATGTTTCATTCACAGCTTATGCAAAACCGTCATT
TCATAATCATCCTTAATTTTATAAAGAACCTTGTACAAAATATTTTTAAT
ATTTATTAATGTTTTTTTTTCAGAATTGAATTTAACTATTTCATAACCAG
AGC
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protein sequence of SMED30009984-orf-1

>SMED30009984-orf-1 ID=SMED30009984-orf-1|Name=SMED30009984-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=685bp
MPGNLTRDYMPALLISLVLLASIICGLVFVICAVVLCKFCYEKQKSKTGI
ADDRKEITRNRRLPSEDIRLCRKLLSLSEVTKPSEKIILKAENNFFRFDS
DLDSSESNHASHIDAGVQTDESSFLQNEFDFKYQISDCTNTISNQDKNQS
VSSQKIDRFSNTSQNQFKKPPHSKSRVKVQIQNYITPNTNSNSLQITQAV
VRRFSDNSPYKDDEALETENYSRGRSASQIPRTYKMSPTPSIIRINNESL
NQGQCLVTPATQRRGSHHLRPFDTHWGNSKLSHSMELVSSKPTITSDERK
VHSFDNALGRRRAISSQGALFQAKSLTMSNSDEAASSSLEEPHNQPLLLT
NKSEEKYQDRMQSPKLSRRNELPLNEIVVYNFSNKMPTNNVKDYKQHSYQ
NIMECPYKDSYKARKSYVGEFNANPELITDCRMTNKKSSPNKERRVRRRV
RGISSRTQSSKDSITINVIDSDTEKQLLHEEIQQDGPRNSLCDFYNSTVD
PSLSPRSAAAKRHQFSRERQSLIQVGDITEFQQMMEANSKQTTSSKDSEN
WKNTKQFLERDYSVDERTSAIFNEFMRPDPKLDKNVMKAQILEKIRTQRK
STCSPIKVNDQNRLRLEYTKSASFASKEDFQNYSNTKEEEFDAHLNFPKL
SAYQQRRQSIGKLKVQSFDQRMQLPVIILPDESP*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..352
NoneNo IPR availableTMHMMTMhelixcoord: 13..35