RNA-binding protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009893 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15
Homology
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818]) HSP 1 Score: 150.214 bits (378), Expect = 3.467e-44 Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR L Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 95
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM24 (RNA binding motif protein 24 [Source:HGNC Symbol;Acc:HGNC:21539]) HSP 1 Score: 153.68 bits (387), Expect = 4.301e-44 Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMAL 537 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG L Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818]) HSP 1 Score: 151.754 bits (382), Expect = 2.903e-43 Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR L Sbjct: 28 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 118
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818]) HSP 1 Score: 140.969 bits (354), Expect = 9.725e-41 Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR L Sbjct: 28 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 118
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM24 (RNA binding motif protein 24 [Source:HGNC Symbol;Acc:HGNC:21539]) HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-20 Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 1 Query: 346 VITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PG 513 VITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPG 57
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189]) HSP 1 Score: 136.732 bits (343), Expect = 4.562e-39 Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRL 546 +DT TKIFVGGLPYHT+D++L +FE FG IEEAVVITDR + KSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR V L ++A ++ Sbjct: 30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAKPRT--NVQLAALAAGQV 130
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189]) HSP 1 Score: 137.117 bits (344), Expect = 5.059e-38 Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRL 546 +DT TKIFVGGLPYHT+D++L +FE FG IEEAVVITDR + KSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR V L ++A ++ Sbjct: 30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAKPRT--NVQLAALAAGQV 130
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: H28G03.1 (pep chromosome:WBcel235:X:5216363:5219095:1 gene:WBGene00019249.1 transcript:H28G03.1a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H28G03.1) HSP 1 Score: 63.929 bits (154), Expect = 3.978e-11 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 229 QHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 QH L K+F+GGL + TTDE L +F +GP+ +A+VI D + SRG+GFVT + A A+++ + G+ + AI Sbjct: 62 QHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAI 146
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: H28G03.1 (pep chromosome:WBcel235:X:5216363:5218418:1 gene:WBGene00019249.1 transcript:H28G03.1c.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H28G03.1) HSP 1 Score: 63.929 bits (154), Expect = 4.030e-11 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 229 QHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 QH L K+F+GGL + TTDE L +F +GP+ +A+VI D + SRG+GFVT + A A+++ + G+ + AI Sbjct: 61 QHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAI 145
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: msi-1 (MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1 [Source:UniProtKB/TrEMBL;Acc:G5EFS2]) HSP 1 Score: 63.5438 bits (153), Expect = 4.274e-11 Identity = 27/76 (35.53%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 K+F+GGL + TT E+LR +F FG + E +V+ D + ++RG+GF+T V+ + ++N +DG+K + +A Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAF 121 HSP 2 Score: 56.6102 bits (135), Expect = 8.386e-9 Identity = 35/128 (27.34%), Postives = 59/128 (46.09%), Query Frame = 1 Query: 217 PTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPN-PCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQV 576 P Q T K+F+GGL +T E ++ +FE +G +E+A+++ D+ + + RG+GFVT + CE + I+ C + V L + K R NL M L+ +P+ Sbjct: 122 PKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYGMPPETLLAYAQYLPRF 249
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0333663) HSP 1 Score: 67.0106 bits (162), Expect = 8.396e-12 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483 D K I ++ P N + T KIFVGG+ T+ E ++ +F FGP+EE V++ D+Q+ + RG+GFVT N CE + I N ++ +KA A+ Sbjct: 253 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 356 HSP 2 Score: 58.151 bits (139), Expect = 5.807e-9 Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 K+FVGGL + T+ + L+ +F FG + + +++ D + +SRG+GF+T + + P +DG+K + A +PR Sbjct: 188 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 269
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0305219) HSP 1 Score: 67.0106 bits (162), Expect = 8.444e-12 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483 D K I ++ P N + T KIFVGG+ T+ E ++ +F FGP+EE V++ D+Q+ + RG+GFVT N CE + I N ++ +KA A+ Sbjct: 240 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 343 HSP 2 Score: 58.151 bits (139), Expect = 5.597e-9 Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 K+FVGGL + T+ + L+ +F FG + + +++ D + +SRG+GF+T + + P +DG+K + A +PR Sbjct: 175 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 256
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0305218) HSP 1 Score: 67.0106 bits (162), Expect = 8.592e-12 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483 D K I ++ P N + T KIFVGG+ T+ E ++ +F FGP+EE V++ D+Q+ + RG+GFVT N CE + I N ++ +KA A+ Sbjct: 269 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 372 HSP 2 Score: 58.151 bits (139), Expect = 6.833e-9 Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 K+FVGGL + T+ + L+ +F FG + + +++ D + +SRG+GF+T + + P +DG+K + A +PR Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0333664) HSP 1 Score: 67.0106 bits (162), Expect = 8.592e-12 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483 D K I ++ P N + T KIFVGG+ T+ E ++ +F FGP+EE V++ D+Q+ + RG+GFVT N CE + I N ++ +KA A+ Sbjct: 269 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 372 HSP 2 Score: 58.151 bits (139), Expect = 6.833e-9 Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 K+FVGGL + T+ + L+ +F FG + + +++ D + +SRG+GF+T + + P +DG+K + A +PR Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0084881) HSP 1 Score: 67.0106 bits (162), Expect = 8.592e-12 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483 D K I ++ P N + T KIFVGG+ T+ E ++ +F FGP+EE V++ D+Q+ + RG+GFVT N CE + I N ++ +KA A+ Sbjct: 269 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 372 HSP 2 Score: 58.151 bits (139), Expect = 6.833e-9 Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 K+FVGGL + T+ + L+ +F FG + + +++ D + +SRG+GF+T + + P +DG+K + A +PR Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43]) HSP 1 Score: 153.295 bits (386), Expect = 2.523e-45 Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRIL PG + Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFG 102
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43]) HSP 1 Score: 154.836 bits (390), Expect = 1.204e-44 Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRIL PG + Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFG 102
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43]) HSP 1 Score: 150.984 bits (380), Expect = 1.783e-44 Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRIL PG + Sbjct: 6 KDTTYTKIFVGGLPYHTTDCSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFG 102
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801]) HSP 1 Score: 153.295 bits (386), Expect = 3.045e-44 Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR++ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm38 (RNA binding motif protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-5923]) HSP 1 Score: 151.369 bits (381), Expect = 2.354e-43 Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINL 669 KDTT TKIFVGGLPYHTTD SLR +FE FG I+EAVVITDRQ+GKSRGYGFVTM++ A RA +PNP IDGRKANVNLA LGAKPR S L + + QV P L G+ QP V PQ L Sbjct: 19 QKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPR------------SPLTGYSTGVQQV---------HPTLIQRQYGLSQPYVYPQAVL 142
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: rbm24 (RNA binding motif protein 24 [Source:NCBI gene;Acc:394612]) HSP 1 Score: 153.295 bits (386), Expect = 4.494e-44 Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: nxph2 (neurexophilin 2 [Source:Xenbase;Acc:XB-GENE-951506]) HSP 1 Score: 149.058 bits (375), Expect = 1.721e-42 Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 KDTT TKIFVGGLPYHTTD SLR +FE FG I+EAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982]) HSP 1 Score: 73.559 bits (179), Expect = 5.567e-15 Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVNLA 480 K+FVGGL + TT+ESL F +G + E VV+ DR+S +SRG+GFVT N EDA A+ N +DGR+ V+ A Sbjct: 19 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 94
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982]) HSP 1 Score: 73.559 bits (179), Expect = 6.425e-15 Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVNLA 480 K+FVGGL + TT+ESL F +G + E VV+ DR+S +SRG+GFVT N EDA A+ N +DGR+ V+ A Sbjct: 19 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 94
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982]) HSP 1 Score: 73.559 bits (179), Expect = 6.535e-15 Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVNLA 480 K+FVGGL + TT+ESL F +G + E VV+ DR+S +SRG+GFVT N EDA A+ N +DGR+ V+ A Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm24 (RNA binding motif protein 24 [Source:MGI Symbol;Acc:MGI:3610364]) HSP 1 Score: 153.68 bits (387), Expect = 3.613e-44 Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMAL 537 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG L Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294]) HSP 1 Score: 143.665 bits (361), Expect = 2.524e-40 Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR L Sbjct: 26 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSL 116
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294]) HSP 1 Score: 143.665 bits (361), Expect = 2.524e-40 Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR L Sbjct: 26 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSL 116
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294]) HSP 1 Score: 95.5153 bits (236), Expect = 7.291e-24 Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVT 396 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFV+ Sbjct: 3 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVS 56
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294]) HSP 1 Score: 78.1814 bits (191), Expect = 8.919e-18 Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSG 369 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+G Sbjct: 26 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 70
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.710e-44 Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 2.066e-43 Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMAL 537 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG L Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 2.265e-43 Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q76LC6|RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 2.299e-43 Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR++ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q6P8A7|RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 2.381e-43 Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPRI+ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102
BLAST of RNA-binding protein vs. TrEMBL
Match: Q5BW90 (SJCHGC05136 protein (Fragment) OS=Schistosoma japonicum OX=6182 PE=2 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 1.268e-52 Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1 Query: 232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLYNNMMISPLLTANLI 630 H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM EDA AI +PNPCIDGRKANVNLA+LGAKPR +PG N + P+ S +P SLYNN M + +T +L+ Sbjct: 5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRFMPGTN---TGVPGFFPLHSGLPMDASQASLYNNPMAAAAVTNSLM 137
BLAST of RNA-binding protein vs. TrEMBL
Match: A0A094ZSI2 (RNA-binding protein 24 OS=Schistosoma haematobium OX=6185 GN=MS3_05468 PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 3.774e-51 Identity = 94/152 (61.84%), Postives = 110/152 (72.37%), Query Frame = 1 Query: 232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLY---------NNMMISPLLTANLI-GMQQPN 648 H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM EDA AI +PNPCIDGRKANVNLA+LGAKPR++PG N A+ P+Q+ +P P Y NN +++PL+ A L+ G PN Sbjct: 5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMTRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRLMPGTN---PAVPGFFPLQTGLPIDASHPGFYNNPATAAVVNNSLMNPLMNAGLLTGFNMPN 153
BLAST of RNA-binding protein vs. TrEMBL
Match: A0A4Z2DQY8 (RNA-binding protein OS=Schistosoma japonicum OX=6182 GN=EWB00_009703 PE=4 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.318e-50 Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1 Query: 232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLYNNMMISPLLTANLI 630 H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM EDA AI +PNPCIDGRKANVNLA+LGAKPR +PG N + P+ S +P SLYNN M + +T +L+ Sbjct: 5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRFMPGTN---TGVPGFFPLHSGLPMDASQASLYNNPMAAAAVTNSLM 137
BLAST of RNA-binding protein vs. TrEMBL
Match: C1LGJ4 (RNA binding motif protein 24 OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.419e-50 Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1 Query: 232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLYNNMMISPLLTANLI 630 H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM EDA AI +PNPCIDGRKANVNLA+LGAKPR +PG N + P+ S +P SLYNN M + +T +L+ Sbjct: 5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRFMPGTN---TGVPGFFPLHSGLPMDASQASLYNNPMAAAAVTNSLM 137
BLAST of RNA-binding protein vs. TrEMBL
Match: A0A146MGV3 (RRM domain-containing protein OS=Schistosoma mansoni OX=6183 GN=c4946_g1_i1 PE=4 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 6.708e-50 Identity = 78/97 (80.41%), Postives = 86/97 (88.66%), Query Frame = 1 Query: 232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNL 522 + KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM EDA AI +PNPCIDGRKANVNLA+LGAKPR++PG L Sbjct: 5 YQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMTRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRLMPGSKL 101
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:103027480]) HSP 1 Score: 153.295 bits (386), Expect = 2.880e-44 Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR++ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:103027480]) HSP 1 Score: 153.295 bits (386), Expect = 4.655e-44 Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 1 Query: 187 CDSKSI-INSKPTNNQH--HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 C S+ +N K H KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR++ PG Sbjct: 7 CPPASVEVNDKKRFWMHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 123
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000016054.2 (RNA binding motif protein 38 [Source:NCBI gene;Acc:103039930]) HSP 1 Score: 146.362 bits (368), Expect = 1.407e-41 Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 1 Query: 217 PTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 PT Q KDTT TKIFVGGLPYHT D SLR +FE +G I+EAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR L Sbjct: 16 PTGIQ--KDTTFTKIFVGGLPYHTNDASLRKYFEAYGDIDEAVVITDRQTGKSRGYGFVTMTDRVAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 110
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm38 (RNA-binding protein 38-like [Source:NCBI gene;Acc:107196932]) HSP 1 Score: 140.584 bits (353), Expect = 2.532e-39 Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 1 Query: 241 DTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 DTT TKIFVGGLPYH TD SLR +F FG I EAVVITDRQ+GKSRGYGFVTM+ A +A +PNP IDGRKANVNLA LGAKPR Sbjct: 21 DTTFTKIFVGGLPYHATDASLREYFGSFGEISEAVVITDRQTGKSRGYGFVTMIEKAAAEQACKDPNPIIDGRKANVNLAYLGAKPR 107
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000056649.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002006.1:25715:26129:1 gene:ENSAMXG00000042924.1 transcript:ENSAMXT00000056649.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 97.8265 bits (242), Expect = 4.040e-25 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVT 396 KDTT TKIFVGGLPYHTTD SLR +FE FG I+EAVVITDRQ+GKSRGYGFV+ Sbjct: 22 QKDTTFTKIFVGGLPYHTTDCSLRKYFEVFGEIDEAVVITDRQTGKSRGYGFVS 75
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801]) HSP 1 Score: 155.221 bits (391), Expect = 1.313e-45 Identity = 76/121 (62.81%), Postives = 85/121 (70.25%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMALS-------RLVPIQSLMPQV 576 KDTT TKIFVGGLPYHTTD SLR FFE FG I+EAVVITDRQSGKSRGYGFVTM + A RA +PNP IDGRKANVNLA +GAKPR++ PG + +P Q + PQ Sbjct: 7 KDTTFTKIFVGGLPYHTTDASLRAFFEAFGEIDEAVVITDRQSGKSRGYGFVTMADRASAERACKDPNPIIDGRKANVNLAYIGAKPRVIQPGFAFGVQQIQPTFIQRPYGIPAQYVYPQA 127
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004893.1 (pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:ENSPMAG00000004449.1 transcript:ENSPMAT00000004893.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 70.0922 bits (170), Expect = 3.109e-14 Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 235 HKDTT---LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLN 525 HKD K+FVGGL + TT+E LR +FE +G + + VV+ D QS +SRG+GFVT + + A+S IDGR A+ + + PG +L+ Sbjct: 2 HKDREPEQFRKLFVGGLSFETTEEGLRQYFEQWGSLTDCVVMKDTQSKRSRGFGFVTFSSMSEVDAAMSARPHKIDGRMVEPKRAV-SREDSMRPGAHLS 100 HSP 2 Score: 59.6918 bits (143), Expect = 1.051e-10 Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 247 TLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 ++ KIFVGG+ T +E LR +FE +G IE V+T+R+SGK RG+ FVT + + + + I+G + A+ Sbjct: 100 SVKKIFVGGIKDDTDEEHLRDYFEKYGRIEIVEVMTERESGKKRGFAFVTFNDHDPVDKIVVQKYHTINGHNCEIRKAL 178
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]) HSP 1 Score: 68.9366 bits (167), Expect = 6.718e-14 Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1 Query: 250 LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 + KIFVGG+ T ++ LR +F+ +G +E A V+ DR +GK RG+GFVT + + + I I+G KA V A+ Sbjct: 99 VKKIFVGGIRDDTDEQHLREYFQVYGDVEAAEVMEDRSTGKKRGFGFVTFSDHDTVDKVIVQKYHTINGHKAEVRKAL 176 HSP 2 Score: 61.6178 bits (148), Expect = 2.143e-11 Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 1 Query: 229 QHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLN 525 QH+ D K+F+GGL + TT++S+R FE +G + + VV+ D + +SRG+GFVT E+ A+ +D R AI + + PG +L Sbjct: 1 QHNGDEQQRKLFIGGLSFETTEDSMRKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYTCPEEVDAAMDARPHHLDNRVVEAKRAI-SREDSLKPGAHLK 98
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]) HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-13 Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 250 LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI-------LGAKPR 501 + KIFVGG+ +T ++ LR +F +G +E V+ DRQSGK RG+GFVT + + + + I+G KA V A+ LG PR Sbjct: 123 VKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKALSKQEMNSLGGDPR 213 HSP 2 Score: 64.6994 bits (156), Expect = 6.396e-12 Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1 Query: 241 DTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLN 525 D K+F+GGL + TT+ES++ FE +G + + VV+ D + +SRG+GFVT ++ E+ A+ +DGR AI + + PG +L Sbjct: 29 DEQQRKLFIGGLSFETTEESMQKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYMSAEEVDAAMEVRPHHLDGRVVEAKRAI-SREDSLKPGAHLK 122
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]) HSP 1 Score: 65.4698 bits (158), Expect = 1.439e-12 Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1 Query: 250 LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMAL 537 + K+F+GGL + TT+ESLR ++E +G I + VV+ D S +SRG+GF+T E+ A+ +DGR A+ R PG+ + L Sbjct: 13 MRKLFIGGLSFETTEESLREYYEQWGTIVDCVVMKDPSSKRSRGFGFITYSVMEEVNSAMQARPHTVDGRVVEAKRAVPRDDSR--PGIQVTVKKL 106 HSP 2 Score: 56.225 bits (134), Expect = 2.004e-9 Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1 Query: 247 TLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTM 399 T+ K+FVGG+ +T + LR +F FG +E ++TD+Q+GK RG+ FVT Sbjct: 102 TVKKLFVGGIKDNTDESHLRDYFSKFGRVESVDMVTDKQTGKKRGFAFVTF 152
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: SNP1 (Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001323]) HSP 1 Score: 54.299 bits (129), Expect = 8.922e-9 Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1 Query: 142 ILLAMISNQNFLDNLCDSKSIINSKPTNNQHHKDTT-LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN 405 I L+ I N LD + + N P + H KDT IF+G LPY + L+ +F FG IE+ ++ D+ + KS+GY F+ + Sbjct: 74 IKLSKIKNAQLLD-----RRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKD 157
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391]) HSP 1 Score: 52.7582 bits (125), Expect = 4.016e-8 Identity = 34/92 (36.96%), Postives = 47/92 (51.09%), Query Frame = 1 Query: 208 NSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISN-PNPCIDGRKANVNLA 480 N K N + + T IFVG L + DE L+ FE G + A VI +R + +SRGYG+V N A +AI IDGR N +++ Sbjct: 156 NKKQKNEETEEPAT---IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMS 244
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961]) HSP 1 Score: 51.6026 bits (122), Expect = 9.189e-8 Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 1 Query: 205 INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAI-SNPNPCIDGRKANVNLA 480 IN + Q D T +FVG L + DE+LR F+ F V+ D Q+G SRGYGFV+ + +DA A+ S ++GR +N A Sbjct: 147 INWAFQSQQSSSDDTFN-LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483]) HSP 1 Score: 51.2174 bits (121), Expect = 1.270e-7 Identity = 18/48 (37.50%), Postives = 35/48 (72.92%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTM 399 K+F+GGL + TT+++LR +F +G + + ++ D +G+SRG+GF++ Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 HSP 2 Score: 50.8322 bits (120), Expect = 1.905e-7 Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1 Query: 154 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507 ++ Q+ LD +I+ K + +D T KIFVGG+ + FF +G I +A ++ D+ +G+SRG+GFVT + + R N RK + I A+PR + Sbjct: 216 VVKTQHILDG-----KVIDPKRAIPRDEQDKT-GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK----IEIKRAEPRHM 323
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: NOP4 (Nucleolar protein; essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs) [Source:SGD;Acc:S000005964]) HSP 1 Score: 51.2174 bits (121), Expect = 1.421e-7 Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 1 Query: 259 IFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAIL 486 +FV +P TDE L FF F PI+ AVV+ D + +SRG+GFV+ +D A++ RK N IL Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKD-TNKRSRGFGFVSFAVEDDTKEALAK------ARKTKFNGHIL 96
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO40104 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S851]) HSP 1 Score: 111.694 bits (278), Expect = 1.576e-30 Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 ++DT TK+FVGG+PY + D++LR FF FG I EAVVI DR + KS+GYGFVTM + A A N P I+GR+ANVNLA LGAKP+ Sbjct: 4 NQDTKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGRQANVNLAYLGAKPK 92
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO29715 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T2V2]) HSP 1 Score: 62.3882 bits (150), Expect = 1.355e-12 Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1 Query: 259 IFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVN 474 IFVG LP+ + LR FFE +G ++ +I+D+ +G+S+G+GFV M N +A +AI N ++GR VN Sbjct: 3 IFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGRSKGFGFVEMPNDAEAQKAIDELNGGTVEGRTIVVN 75
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO36522 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SIF0]) HSP 1 Score: 64.3142 bits (155), Expect = 2.846e-12 Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYR--------AISNPNPCIDGRKANVNLAI 483 K+FVGGL TT+E+LR +FE +G + + VVI D + KSRG+G+VT + Y+ + N IDG++ V AI Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFAD----YKVTRNVLKDKVENGAHRIDGKEVEVKRAI 94
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO40536 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6X1]) HSP 1 Score: 61.6178 bits (148), Expect = 1.848e-11 Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 253 TKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 T++FVGGL TT+ L FF FGP+ + ++ DR++G ++G+GF+T E A + I N GR + AI Sbjct: 17 TRVFVGGLARGTTELELETFFSNFGPVADVRIVCDRRTGLNKGFGFITFSLEEPAKKLIEQNNIDFKGRSLRLRQAI 93
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO39879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8S5]) HSP 1 Score: 61.2326 bits (147), Expect = 3.103e-11 Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 K+F+GGL + TT E LR FE FG ++E VV+ D + +SRG+GF+T + + +++ +DG+K + LA+ Sbjct: 1 KMFIGGLSWQTTAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKIDPKLAV 76 HSP 2 Score: 58.9214 bits (141), Expect = 2.314e-10 Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 244 TTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLA 480 TT KIF+GGL +T++E ++ +F FG I E +++ D+ + + RG+GFVT + A +A I+ +K V A Sbjct: 86 TTTKKIFIGGLSTNTSEEDMKKYFSQFGKITETMLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKA 164
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm24b (RNA-binding protein 24 [Source:NCBI gene;Acc:101161576]) HSP 1 Score: 152.91 bits (385), Expect = 4.879e-44 Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR++ PG Sbjct: 7 KDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKDPNPIIDGRKANVNLAYLGAKPRVIQPGFAFG 103
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:101163671]) HSP 1 Score: 152.14 bits (383), Expect = 8.545e-44 Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525 KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR++ PG Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: RBM38 (RNA-binding protein 38 [Source:NCBI gene;Acc:101160403]) HSP 1 Score: 147.517 bits (371), Expect = 6.486e-42 Identity = 81/149 (54.36%), Postives = 92/149 (61.74%), Query Frame = 1 Query: 217 PTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR-ILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQ 660 PT+ Q KDTT TKIFVGGLPYHT D SLR +FE FG I+EAVVITDRQ+GKSRGYGFVTM + A RA +PNP IDGRKANVNLA LGAKPR I G++L + P L G+ QP + PQ Sbjct: 16 PTSLQ--KDTTFTKIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGISLGVQP----------------------VHPALIQRQYGLTQPFIYPQ 140
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm38 (RNA-binding protein 38 [Source:NCBI gene;Acc:101156012]) HSP 1 Score: 144.05 bits (362), Expect = 1.784e-40 Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 1 Query: 238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501 KDTT TKIFVGGLPYHT+D SLR +FE FG I+EAVVITD+Q+GKSRGYGFVTMV+ A +A + NP IDGRKANVNLA LGAKPR Sbjct: 24 KDTTYTKIFVGGLPYHTSDASLRKYFETFGDIDEAVVITDKQTGKSRGYGFVTMVDRAAAEQACKDANPIIDGRKANVNLAYLGAKPR 111
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: cirbpa (cold inducible RNA binding protein [Source:NCBI gene;Acc:101165004]) HSP 1 Score: 68.1662 bits (165), Expect = 2.186e-13 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1 Query: 247 TLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVN 474 L K+F+GGL + T ++SL F +G IE+ VI D+++G+SRG+GFV N EDA A+ N +DGR V+ Sbjct: 2 ALGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 78
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1) HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0 Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 1 Query: 154 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRNNYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQQLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV 1023 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRNNYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQQLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV Sbjct: 1 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRNNYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQQLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV 290
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1) HSP 1 Score: 288.115 bits (736), Expect = 4.194e-98 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 Query: 154 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSL 564 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSL Sbjct: 1 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSL 137
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000040788.1 (SMESG000040788.1) HSP 1 Score: 168.703 bits (426), Expect = 1.059e-49 Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 1 Query: 208 NSKPTNNQH-----HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVN 519 N P N +H HKDTT TKIFVGGLPYHTTDE+LR +FE FG +EEAVVITDRQ+GKSRGYGFVTM N EDA +AI +PNPCIDGRK NVNLAILGAKPR +P +N Sbjct: 26 NEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMN 134
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000018666.1 (SMESG000018666.1) HSP 1 Score: 67.781 bits (164), Expect = 3.164e-12 Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRG-YGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMAL 537 +IFVGG+ +TT+E L++FF +GPI++ +I DR +G S+G YGFVT N E A + I N + ++ +N+ K + P ++ L Sbjct: 45 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVL 138
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000081075.1 (SMESG000081075.1) HSP 1 Score: 65.855 bits (159), Expect = 8.333e-12 Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1 Query: 241 DTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 D K+F+GGL TT+ESL+ F+ +G I + VV+ D Q+GKSRG+GFVT + A SN +DG K + A+ Sbjct: 6 DERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDSSSVDDAQSNRPHEVDGIKVDSKRAM 86 HSP 2 Score: 48.9062 bits (115), Expect = 2.693e-6 Identity = 31/99 (31.31%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 187 CDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483 DSK + + T+ + H T+ ++FVG L + + LR +F +G I +AV+I + +G+SRG+GFVT + + + I +DG V A+ Sbjct: 80 VDSKRAMPKEDTSPEFH--ATVNRLFVGRLKRNVVADDLRQYFGEYGTIADAVIINN-SNGESRGFGFVTFDDTDSVDKIIVTRPHQLDGNPIEVKKAL 175 The following BLAST results are available for this feature:
BLAST of RNA-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RNA-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RNA-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RNA-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009893 ID=SMED30009893|Name=RNA-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1106bpback to top protein sequence of SMED30009893-orf-1 >SMED30009893-orf-1 ID=SMED30009893-orf-1|Name=SMED30009893-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=291bp MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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