RNA-binding protein

Overview
NameRNA-binding protein
Smed IDSMED30009893
Length (bp)1106
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA-binding protein (SMED30009893) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein (SMED30009893) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein (SMED30009893) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein (SMED30009893) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30009893

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridiaSMED30009893h1SMcG0004501 dd_Smed_v4_11008_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30009893h1SMcG0004501 dd_Smed_v4_11008_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009893h1SMcG0004501 dd_Smed_v4_11008_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
oocyteSMED30009893h1SMcG0004501 Contig51099newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
oocyteSMED30009893h1SMcG0004501 Contig51099uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30009893h1SMcG0004501 Contig51099newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
vitelline glandSMED30009893h1SMcG0004501 Contig51099uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30009893h1SMcG0004501 Contig51099newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30009893h1SMcG0004501 Contig51099uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30009893h1SMcG0004501 Contig35871newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30009893h1SMcG0004501 Contig35871uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30009893h1SMcG0004501 Contig22097newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30009893h1SMcG0004501 Contig22097uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Category 2 cellSMED30009893h1SMcG0004501 dd_Smed_v4_11008_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30009893h1SMcG0004501 dd_Smed_v4_11008_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818])

HSP 1 Score: 150.214 bits (378), Expect = 3.467e-44
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR L
Sbjct:    6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 95          
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM24 (RNA binding motif protein 24 [Source:HGNC Symbol;Acc:HGNC:21539])

HSP 1 Score: 153.68 bits (387), Expect = 4.301e-44
Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMAL 537
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG       L
Sbjct:    6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106          
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818])

HSP 1 Score: 151.754 bits (382), Expect = 2.903e-43
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
             KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR L
Sbjct:   28 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 118          
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818])

HSP 1 Score: 140.969 bits (354), Expect = 9.725e-41
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
             KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR L
Sbjct:   28 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 118          
BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM24 (RNA binding motif protein 24 [Source:HGNC Symbol;Acc:HGNC:21539])

HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-20
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 1
Query:  346 VITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PG 513
            VITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG
Sbjct:    1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPG 57          
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189])

HSP 1 Score: 136.732 bits (343), Expect = 4.562e-39
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRL 546
            +DT  TKIFVGGLPYHT+D++L  +FE FG IEEAVVITDR + KSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR    V L ++A  ++
Sbjct:   30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAKPRT--NVQLAALAAGQV 130          
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189])

HSP 1 Score: 137.117 bits (344), Expect = 5.059e-38
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRL 546
            +DT  TKIFVGGLPYHT+D++L  +FE FG IEEAVVITDR + KSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR    V L ++A  ++
Sbjct:   30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAKPRT--NVQLAALAAGQV 130          
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: H28G03.1 (pep chromosome:WBcel235:X:5216363:5219095:1 gene:WBGene00019249.1 transcript:H28G03.1a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H28G03.1)

HSP 1 Score: 63.929 bits (154), Expect = 3.978e-11
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  229 QHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            QH     L K+F+GGL + TTDE L  +F  +GP+ +A+VI D  +  SRG+GFVT  +   A  A+++    + G+  +   AI
Sbjct:   62 QHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAI 146          
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: H28G03.1 (pep chromosome:WBcel235:X:5216363:5218418:1 gene:WBGene00019249.1 transcript:H28G03.1c.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:H28G03.1)

HSP 1 Score: 63.929 bits (154), Expect = 4.030e-11
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  229 QHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            QH     L K+F+GGL + TTDE L  +F  +GP+ +A+VI D  +  SRG+GFVT  +   A  A+++    + G+  +   AI
Sbjct:   61 QHDSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAI 145          
BLAST of RNA-binding protein vs. Ensembl Celegans
Match: msi-1 (MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1 [Source:UniProtKB/TrEMBL;Acc:G5EFS2])

HSP 1 Score: 63.5438 bits (153), Expect = 4.274e-11
Identity = 27/76 (35.53%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            K+F+GGL + TT E+LR +F  FG + E +V+ D  + ++RG+GF+T V+     + ++N    +DG+K +  +A 
Sbjct:   46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAF 121          

HSP 2 Score: 56.6102 bits (135), Expect = 8.386e-9
Identity = 35/128 (27.34%), Postives = 59/128 (46.09%), Query Frame = 1
Query:  217 PTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPN-PCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQV 576
            P   Q    T   K+F+GGL   +T E ++ +FE +G +E+A+++ D+ + + RG+GFVT  +       CE  +  I+     C   +   V L +   K R     NL  M    L+     +P+ 
Sbjct:  122 PKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYGMPPETLLAYAQYLPRF 249          
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0333663)

HSP 1 Score: 67.0106 bits (162), Expect = 8.396e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483
            D K I   ++ P N     + T  KIFVGG+   T+ E ++ +F  FGP+EE V++ D+Q+ + RG+GFVT  N       CE  +  I N    ++ +KA    A+
Sbjct:  253 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 356          

HSP 2 Score: 58.151 bits (139), Expect = 5.807e-9
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            K+FVGGL + T+ + L+ +F  FG + + +++ D  + +SRG+GF+T        + +  P   +DG+K +   A    +PR
Sbjct:  188 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 269          
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0305219)

HSP 1 Score: 67.0106 bits (162), Expect = 8.444e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483
            D K I   ++ P N     + T  KIFVGG+   T+ E ++ +F  FGP+EE V++ D+Q+ + RG+GFVT  N       CE  +  I N    ++ +KA    A+
Sbjct:  240 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 343          

HSP 2 Score: 58.151 bits (139), Expect = 5.597e-9
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            K+FVGGL + T+ + L+ +F  FG + + +++ D  + +SRG+GF+T        + +  P   +DG+K +   A    +PR
Sbjct:  175 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 256          
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0305218)

HSP 1 Score: 67.0106 bits (162), Expect = 8.592e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483
            D K I   ++ P N     + T  KIFVGG+   T+ E ++ +F  FGP+EE V++ D+Q+ + RG+GFVT  N       CE  +  I N    ++ +KA    A+
Sbjct:  269 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 372          

HSP 2 Score: 58.151 bits (139), Expect = 6.833e-9
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            K+FVGGL + T+ + L+ +F  FG + + +++ D  + +SRG+GF+T        + +  P   +DG+K +   A    +PR
Sbjct:  204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285          
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0333664)

HSP 1 Score: 67.0106 bits (162), Expect = 8.592e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483
            D K I   ++ P N     + T  KIFVGG+   T+ E ++ +F  FGP+EE V++ D+Q+ + RG+GFVT  N       CE  +  I N    ++ +KA    A+
Sbjct:  269 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 372          

HSP 2 Score: 58.151 bits (139), Expect = 6.833e-9
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            K+FVGGL + T+ + L+ +F  FG + + +++ D  + +SRG+GF+T        + +  P   +DG+K +   A    +PR
Sbjct:  204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285          
BLAST of RNA-binding protein vs. Ensembl Fly
Match: msi (gene:FBgn0011666 transcript:FBtr0084881)

HSP 1 Score: 67.0106 bits (162), Expect = 8.592e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  190 DSKSI--INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN-------CEDAYRAISNPNPCIDGRKANVNLAI 483
            D K I   ++ P N     + T  KIFVGG+   T+ E ++ +F  FGP+EE V++ D+Q+ + RG+GFVT  N       CE  +  I N    ++ +KA    A+
Sbjct:  269 DGKKIDPKHATPKNRPRQANKT-KKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKK--VECKKAQPKEAV 372          

HSP 2 Score: 58.151 bits (139), Expect = 6.833e-9
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            K+FVGGL + T+ + L+ +F  FG + + +++ D  + +SRG+GF+T        + +  P   +DG+K +   A    +PR
Sbjct:  204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPR 285          
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43])

HSP 1 Score: 153.295 bits (386), Expect = 2.523e-45
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRIL PG +  
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFG 102          
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43])

HSP 1 Score: 154.836 bits (390), Expect = 1.204e-44
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRIL PG +  
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFG 102          
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43])

HSP 1 Score: 150.984 bits (380), Expect = 1.783e-44
Identity = 74/97 (76.29%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRIL PG +  
Sbjct:    6 KDTTYTKIFVGGLPYHTTDCSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFG 102          
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801])

HSP 1 Score: 153.295 bits (386), Expect = 3.045e-44
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR++ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102          
BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm38 (RNA binding motif protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-5923])

HSP 1 Score: 151.369 bits (381), Expect = 2.354e-43
Identity = 82/145 (56.55%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINL 669
             KDTT TKIFVGGLPYHTTD SLR +FE FG I+EAVVITDRQ+GKSRGYGFVTM++   A RA  +PNP IDGRKANVNLA LGAKPR            S L    + + QV          P L     G+ QP V PQ  L
Sbjct:   19 QKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERACKDPNPIIDGRKANVNLAYLGAKPR------------SPLTGYSTGVQQV---------HPTLIQRQYGLSQPYVYPQAVL 142          
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: rbm24 (RNA binding motif protein 24 [Source:NCBI gene;Acc:394612])

HSP 1 Score: 153.295 bits (386), Expect = 4.494e-44
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102          
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: nxph2 (neurexophilin 2 [Source:Xenbase;Acc:XB-GENE-951506])

HSP 1 Score: 149.058 bits (375), Expect = 1.721e-42
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
             KDTT TKIFVGGLPYHTTD SLR +FE FG I+EAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR
Sbjct:    5 QKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPR 93          
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 73.559 bits (179), Expect = 5.567e-15
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVNLA 480
            K+FVGGL + TT+ESL   F  +G + E VV+ DR+S +SRG+GFVT  N EDA  A+   N   +DGR+  V+ A
Sbjct:   19 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 94          
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 73.559 bits (179), Expect = 6.425e-15
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVNLA 480
            K+FVGGL + TT+ESL   F  +G + E VV+ DR+S +SRG+GFVT  N EDA  A+   N   +DGR+  V+ A
Sbjct:   19 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 94          
BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 73.559 bits (179), Expect = 6.535e-15
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVNLA 480
            K+FVGGL + TT+ESL   F  +G + E VV+ DR+S +SRG+GFVT  N EDA  A+   N   +DGR+  V+ A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm24 (RNA binding motif protein 24 [Source:MGI Symbol;Acc:MGI:3610364])

HSP 1 Score: 153.68 bits (387), Expect = 3.613e-44
Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMAL 537
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG       L
Sbjct:    6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106          
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 143.665 bits (361), Expect = 2.524e-40
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
             KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR L
Sbjct:   26 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSL 116          
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 143.665 bits (361), Expect = 2.524e-40
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
             KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR L
Sbjct:   26 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSL 116          
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 95.5153 bits (236), Expect = 7.291e-24
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVT 396
             KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFV+
Sbjct:    3 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVS 56          
BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 78.1814 bits (191), Expect = 8.919e-18
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSG 369
             KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+G
Sbjct:   26 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 70          
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.710e-44
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102          
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.066e-43
Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMAL 537
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG       L
Sbjct:    6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQL 106          
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q6GQD3|RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.265e-43
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102          
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q76LC6|RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.299e-43
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR++ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102          
BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q6P8A7|RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 2.381e-43
Identity = 73/97 (75.26%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPRI+ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFG 102          
BLAST of RNA-binding protein vs. TrEMBL
Match: Q5BW90 (SJCHGC05136 protein (Fragment) OS=Schistosoma japonicum OX=6182 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.268e-52
Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1
Query:  232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLYNNMMISPLLTANLI 630
            H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM   EDA  AI +PNPCIDGRKANVNLA+LGAKPR +PG N     +    P+ S +P      SLYNN M +  +T +L+
Sbjct:    5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRFMPGTN---TGVPGFFPLHSGLPMDASQASLYNNPMAAAAVTNSLM 137          
BLAST of RNA-binding protein vs. TrEMBL
Match: A0A094ZSI2 (RNA-binding protein 24 OS=Schistosoma haematobium OX=6185 GN=MS3_05468 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.774e-51
Identity = 94/152 (61.84%), Postives = 110/152 (72.37%), Query Frame = 1
Query:  232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLY---------NNMMISPLLTANLI-GMQQPN 648
            H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM   EDA  AI +PNPCIDGRKANVNLA+LGAKPR++PG N    A+    P+Q+ +P     P  Y         NN +++PL+ A L+ G   PN
Sbjct:    5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMTRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRLMPGTN---PAVPGFFPLQTGLPIDASHPGFYNNPATAAVVNNSLMNPLMNAGLLTGFNMPN 153          
BLAST of RNA-binding protein vs. TrEMBL
Match: A0A4Z2DQY8 (RNA-binding protein OS=Schistosoma japonicum OX=6182 GN=EWB00_009703 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.318e-50
Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1
Query:  232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLYNNMMISPLLTANLI 630
            H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM   EDA  AI +PNPCIDGRKANVNLA+LGAKPR +PG N     +    P+ S +P      SLYNN M +  +T +L+
Sbjct:    5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRFMPGTN---TGVPGFFPLHSGLPMDASQASLYNNPMAAAAVTNSLM 137          
BLAST of RNA-binding protein vs. TrEMBL
Match: C1LGJ4 (RNA binding motif protein 24 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.419e-50
Identity = 90/136 (66.18%), Postives = 103/136 (75.74%), Query Frame = 1
Query:  232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMP---QVPSLYNNMMISPLLTANLI 630
            H KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM   EDA  AI +PNPCIDGRKANVNLA+LGAKPR +PG N     +    P+ S +P      SLYNN M +  +T +L+
Sbjct:    5 HQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMSRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRFMPGTN---TGVPGFFPLHSGLPMDASQASLYNNPMAAAAVTNSLM 137          
BLAST of RNA-binding protein vs. TrEMBL
Match: A0A146MGV3 (RRM domain-containing protein OS=Schistosoma mansoni OX=6183 GN=c4946_g1_i1 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.708e-50
Identity = 78/97 (80.41%), Postives = 86/97 (88.66%), Query Frame = 1
Query:  232 HHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNL 522
            + KDTTLTKIFVGGLPYHTTDESLR FF+ FGPI+EAVVITDRQ+GKSRGYGFVTM   EDA  AI +PNPCIDGRKANVNLA+LGAKPR++PG  L
Sbjct:    5 YQKDTTLTKIFVGGLPYHTTDESLRCFFDQFGPIDEAVVITDRQTGKSRGYGFVTMTRTEDALLAIRDPNPCIDGRKANVNLAVLGAKPRLMPGSKL 101          
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:103027480])

HSP 1 Score: 153.295 bits (386), Expect = 2.880e-44
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR++ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102          
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:103027480])

HSP 1 Score: 153.295 bits (386), Expect = 4.655e-44
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  187 CDSKSI-INSKPTNNQH--HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            C   S+ +N K     H   KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR++ PG    
Sbjct:    7 CPPASVEVNDKKRFWMHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 123          
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000016054.2 (RNA binding motif protein 38 [Source:NCBI gene;Acc:103039930])

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-41
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  217 PTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
            PT  Q  KDTT TKIFVGGLPYHT D SLR +FE +G I+EAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR L
Sbjct:   16 PTGIQ--KDTTFTKIFVGGLPYHTNDASLRKYFEAYGDIDEAVVITDRQTGKSRGYGFVTMTDRVAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 110          
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm38 (RNA-binding protein 38-like [Source:NCBI gene;Acc:107196932])

HSP 1 Score: 140.584 bits (353), Expect = 2.532e-39
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 1
Query:  241 DTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            DTT TKIFVGGLPYH TD SLR +F  FG I EAVVITDRQ+GKSRGYGFVTM+    A +A  +PNP IDGRKANVNLA LGAKPR
Sbjct:   21 DTTFTKIFVGGLPYHATDASLREYFGSFGEISEAVVITDRQTGKSRGYGFVTMIEKAAAEQACKDPNPIIDGRKANVNLAYLGAKPR 107          
BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000056649.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002006.1:25715:26129:1 gene:ENSAMXG00000042924.1 transcript:ENSAMXT00000056649.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 97.8265 bits (242), Expect = 4.040e-25
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVT 396
             KDTT TKIFVGGLPYHTTD SLR +FE FG I+EAVVITDRQ+GKSRGYGFV+
Sbjct:   22 QKDTTFTKIFVGGLPYHTTDCSLRKYFEVFGEIDEAVVITDRQTGKSRGYGFVS 75          
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801])

HSP 1 Score: 155.221 bits (391), Expect = 1.313e-45
Identity = 76/121 (62.81%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLNSMALS-------RLVPIQSLMPQV 576
            KDTT TKIFVGGLPYHTTD SLR FFE FG I+EAVVITDRQSGKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA +GAKPR++ PG       +          +P Q + PQ 
Sbjct:    7 KDTTFTKIFVGGLPYHTTDASLRAFFEAFGEIDEAVVITDRQSGKSRGYGFVTMADRASAERACKDPNPIIDGRKANVNLAYIGAKPRVIQPGFAFGVQQIQPTFIQRPYGIPAQYVYPQA 127          
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004893.1 (pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:ENSPMAG00000004449.1 transcript:ENSPMAT00000004893.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 70.0922 bits (170), Expect = 3.109e-14
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  235 HKDTT---LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLN 525
            HKD       K+FVGGL + TT+E LR +FE +G + + VV+ D QS +SRG+GFVT  +  +   A+S     IDGR      A+   +  + PG +L+
Sbjct:    2 HKDREPEQFRKLFVGGLSFETTEEGLRQYFEQWGSLTDCVVMKDTQSKRSRGFGFVTFSSMSEVDAAMSARPHKIDGRMVEPKRAV-SREDSMRPGAHLS 100          

HSP 2 Score: 59.6918 bits (143), Expect = 1.051e-10
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  247 TLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            ++ KIFVGG+   T +E LR +FE +G IE   V+T+R+SGK RG+ FVT  + +   + +      I+G    +  A+
Sbjct:  100 SVKKIFVGGIKDDTDEEHLRDYFEKYGRIEIVEVMTERESGKKRGFAFVTFNDHDPVDKIVVQKYHTINGHNCEIRKAL 178          
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030])

HSP 1 Score: 68.9366 bits (167), Expect = 6.718e-14
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  250 LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            + KIFVGG+   T ++ LR +F+ +G +E A V+ DR +GK RG+GFVT  + +   + I      I+G KA V  A+
Sbjct:   99 VKKIFVGGIRDDTDEQHLREYFQVYGDVEAAEVMEDRSTGKKRGFGFVTFSDHDTVDKVIVQKYHTINGHKAEVRKAL 176          

HSP 2 Score: 61.6178 bits (148), Expect = 2.143e-11
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  229 QHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLN 525
            QH+ D    K+F+GGL + TT++S+R  FE +G + + VV+ D  + +SRG+GFVT    E+   A+      +D R      AI   +  + PG +L 
Sbjct:    1 QHNGDEQQRKLFIGGLSFETTEDSMRKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYTCPEEVDAAMDARPHHLDNRVVEAKRAI-SREDSLKPGAHLK 98          
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030])

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-13
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  250 LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI-------LGAKPR 501
            + KIFVGG+  +T ++ LR +F  +G +E   V+ DRQSGK RG+GFVT  + +   + +      I+G KA V  A+       LG  PR
Sbjct:  123 VKKIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKALSKQEMNSLGGDPR 213          

HSP 2 Score: 64.6994 bits (156), Expect = 6.396e-12
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  241 DTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLN 525
            D    K+F+GGL + TT+ES++  FE +G + + VV+ D  + +SRG+GFVT ++ E+   A+      +DGR      AI   +  + PG +L 
Sbjct:   29 DEQQRKLFIGGLSFETTEESMQKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYMSAEEVDAAMEVRPHHLDGRVVEAKRAI-SREDSLKPGAHLK 122          
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033])

HSP 1 Score: 65.4698 bits (158), Expect = 1.439e-12
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  250 LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMAL 537
            + K+F+GGL + TT+ESLR ++E +G I + VV+ D  S +SRG+GF+T    E+   A+      +DGR      A+     R  PG+ +    L
Sbjct:   13 MRKLFIGGLSFETTEESLREYYEQWGTIVDCVVMKDPSSKRSRGFGFITYSVMEEVNSAMQARPHTVDGRVVEAKRAVPRDDSR--PGIQVTVKKL 106          

HSP 2 Score: 56.225 bits (134), Expect = 2.004e-9
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:  247 TLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTM 399
            T+ K+FVGG+  +T +  LR +F  FG +E   ++TD+Q+GK RG+ FVT 
Sbjct:  102 TVKKLFVGGIKDNTDESHLRDYFSKFGRVESVDMVTDKQTGKKRGFAFVTF 152          
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: SNP1 (Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001323])

HSP 1 Score: 54.299 bits (129), Expect = 8.922e-9
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1
Query:  142 ILLAMISNQNFLDNLCDSKSIINSKPTNNQHHKDTT-LTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVN 405
            I L+ I N   LD     + + N  P  + H KDT     IF+G LPY   +  L+ +F  FG IE+  ++ D+ + KS+GY F+   +
Sbjct:   74 IKLSKIKNAQLLD-----RRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKD 157          
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391])

HSP 1 Score: 52.7582 bits (125), Expect = 4.016e-8
Identity = 34/92 (36.96%), Postives = 47/92 (51.09%), Query Frame = 1
Query:  208 NSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISN-PNPCIDGRKANVNLA 480
            N K  N +  +  T   IFVG L +   DE L+  FE  G +  A VI +R + +SRGYG+V   N   A +AI       IDGR  N +++
Sbjct:  156 NKKQKNEETEEPAT---IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMS 244          
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961])

HSP 1 Score: 51.6026 bits (122), Expect = 9.189e-8
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 1
Query:  205 INSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAI-SNPNPCIDGRKANVNLA 480
            IN    + Q   D T   +FVG L  +  DE+LR  F+ F       V+ D Q+G SRGYGFV+  + +DA  A+ S     ++GR   +N A
Sbjct:  147 INWAFQSQQSSSDDTFN-LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238          
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483])

HSP 1 Score: 51.2174 bits (121), Expect = 1.270e-7
Identity = 18/48 (37.50%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTM 399
            K+F+GGL + TT+++LR +F  +G + +  ++ D  +G+SRG+GF++ 
Sbjct:  160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207          

HSP 2 Score: 50.8322 bits (120), Expect = 1.905e-7
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1
Query:  154 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL 507
            ++  Q+ LD       +I+ K    +  +D T  KIFVGG+      +    FF  +G I +A ++ D+ +G+SRG+GFVT  + +   R   N       RK    + I  A+PR +
Sbjct:  216 VVKTQHILDG-----KVIDPKRAIPRDEQDKT-GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK----IEIKRAEPRHM 323          
BLAST of RNA-binding protein vs. Ensembl Yeast
Match: NOP4 (Nucleolar protein; essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs) [Source:SGD;Acc:S000005964])

HSP 1 Score: 51.2174 bits (121), Expect = 1.421e-7
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 1
Query:  259 IFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAIL 486
            +FV  +P   TDE L  FF  F PI+ AVV+ D  + +SRG+GFV+    +D   A++        RK   N  IL
Sbjct:   28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKD-TNKRSRGFGFVSFAVEDDTKEALAK------ARKTKFNGHIL 96          
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO40104 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S851])

HSP 1 Score: 111.694 bits (278), Expect = 1.576e-30
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  235 HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            ++DT  TK+FVGG+PY + D++LR FF  FG I EAVVI DR + KS+GYGFVTM   + A  A  N  P I+GR+ANVNLA LGAKP+
Sbjct:    4 NQDTKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGRQANVNLAYLGAKPK 92          
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO29715 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T2V2])

HSP 1 Score: 62.3882 bits (150), Expect = 1.355e-12
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  259 IFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVN 474
            IFVG LP+   +  LR FFE +G ++   +I+D+ +G+S+G+GFV M N  +A +AI   N   ++GR   VN
Sbjct:    3 IFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGRSKGFGFVEMPNDAEAQKAIDELNGGTVEGRTIVVN 75          
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO36522 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SIF0])

HSP 1 Score: 64.3142 bits (155), Expect = 2.846e-12
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYR--------AISNPNPCIDGRKANVNLAI 483
            K+FVGGL   TT+E+LR +FE +G + + VVI D  + KSRG+G+VT  +    Y+         + N    IDG++  V  AI
Sbjct:   15 KLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFAD----YKVTRNVLKDKVENGAHRIDGKEVEVKRAI 94          
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO40536 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6X1])

HSP 1 Score: 61.6178 bits (148), Expect = 1.848e-11
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1
Query:  253 TKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            T++FVGGL   TT+  L  FF  FGP+ +  ++ DR++G ++G+GF+T    E A + I   N    GR   +  AI
Sbjct:   17 TRVFVGGLARGTTELELETFFSNFGPVADVRIVCDRRTGLNKGFGFITFSLEEPAKKLIEQNNIDFKGRSLRLRQAI 93          
BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO39879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8S5])

HSP 1 Score: 61.2326 bits (147), Expect = 3.103e-11
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            K+F+GGL + TT E LR  FE FG ++E VV+ D  + +SRG+GF+T  + +     +++    +DG+K +  LA+
Sbjct:    1 KMFIGGLSWQTTAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKIDPKLAV 76          

HSP 2 Score: 58.9214 bits (141), Expect = 2.314e-10
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  244 TTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLA 480
            TT  KIF+GGL  +T++E ++ +F  FG I E +++ D+ + + RG+GFVT  +   A +A       I+ +K  V  A
Sbjct:   86 TTTKKIFIGGLSTNTSEEDMKKYFSQFGKITETMLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKA 164          
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm24b (RNA-binding protein 24 [Source:NCBI gene;Acc:101161576])

HSP 1 Score: 152.91 bits (385), Expect = 4.879e-44
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR++ PG    
Sbjct:    7 KDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKDPNPIIDGRKANVNLAYLGAKPRVIQPGFAFG 103          
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:101163671])

HSP 1 Score: 152.14 bits (383), Expect = 8.545e-44
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRIL-PGVNLN 525
            KDTT TKIFVGGLPYHTTD SLR +FE FG IEEAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR++ PG    
Sbjct:    6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFG 102          
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: RBM38 (RNA-binding protein 38 [Source:NCBI gene;Acc:101160403])

HSP 1 Score: 147.517 bits (371), Expect = 6.486e-42
Identity = 81/149 (54.36%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  217 PTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR-ILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQ 660
            PT+ Q  KDTT TKIFVGGLPYHT D SLR +FE FG I+EAVVITDRQ+GKSRGYGFVTM +   A RA  +PNP IDGRKANVNLA LGAKPR I  G++L                          + P L     G+ QP + PQ
Sbjct:   16 PTSLQ--KDTTFTKIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGISLGVQP----------------------VHPALIQRQYGLTQPFIYPQ 140          
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm38 (RNA-binding protein 38 [Source:NCBI gene;Acc:101156012])

HSP 1 Score: 144.05 bits (362), Expect = 1.784e-40
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  238 KDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPR 501
            KDTT TKIFVGGLPYHT+D SLR +FE FG I+EAVVITD+Q+GKSRGYGFVTMV+   A +A  + NP IDGRKANVNLA LGAKPR
Sbjct:   24 KDTTYTKIFVGGLPYHTSDASLRKYFETFGDIDEAVVITDKQTGKSRGYGFVTMVDRAAAEQACKDANPIIDGRKANVNLAYLGAKPR 111          
BLAST of RNA-binding protein vs. Ensembl Medaka
Match: cirbpa (cold inducible RNA binding protein [Source:NCBI gene;Acc:101165004])

HSP 1 Score: 68.1662 bits (165), Expect = 2.186e-13
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  247 TLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPN-PCIDGRKANVN 474
             L K+F+GGL + T ++SL   F  +G IE+  VI D+++G+SRG+GFV   N EDA  A+   N   +DGR   V+
Sbjct:    2 ALGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTLDGRAIRVD 78          
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1)

HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 1
Query:  154 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRNNYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQQLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV 1023
            MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRNNYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQQLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV
Sbjct:    1 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMISPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRNNYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQQLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV 290          
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1)

HSP 1 Score: 288.115 bits (736), Expect = 4.194e-98
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1
Query:  154 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSL 564
            MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSL
Sbjct:    1 MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSL 137          
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000040788.1 (SMESG000040788.1)

HSP 1 Score: 168.703 bits (426), Expect = 1.059e-49
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 1
Query:  208 NSKPTNNQH-----HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVN 519
            N  P N +H     HKDTT TKIFVGGLPYHTTDE+LR +FE FG +EEAVVITDRQ+GKSRGYGFVTM N EDA +AI +PNPCIDGRK NVNLAILGAKPR +P +N
Sbjct:   26 NEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMN 134          
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000018666.1 (SMESG000018666.1)

HSP 1 Score: 67.781 bits (164), Expect = 3.164e-12
Identity = 34/95 (35.79%), Postives = 55/95 (57.89%), Query Frame = 1
Query:  256 KIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRG-YGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVNLNSMAL 537
            +IFVGG+  +TT+E L++FF  +GPI++  +I DR +G S+G YGFVT  N E A + I N    +  ++  +N+     K  + P   ++   L
Sbjct:   45 RIFVGGITSNTTEEELKIFFSSYGPIKDVKIINDR-TGLSKGSYGFVTFENQETAEKIIKNEAETLIFKERKLNIGHAVRKQHLFPRQEISGTVL 138          
BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000081075.1 (SMESG000081075.1)

HSP 1 Score: 65.855 bits (159), Expect = 8.333e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  241 DTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
            D    K+F+GGL   TT+ESL+ F+  +G I + VV+ D Q+GKSRG+GFVT  +      A SN    +DG K +   A+
Sbjct:    6 DERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDSSSVDDAQSNRPHEVDGIKVDSKRAM 86          

HSP 2 Score: 48.9062 bits (115), Expect = 2.693e-6
Identity = 31/99 (31.31%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  187 CDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAI 483
             DSK  +  + T+ + H   T+ ++FVG L  +   + LR +F  +G I +AV+I +  +G+SRG+GFVT  + +   + I      +DG    V  A+
Sbjct:   80 VDSKRAMPKEDTSPEFH--ATVNRLFVGRLKRNVVADDLRQYFGEYGTIADAVIINN-SNGESRGFGFVTFDDTDSVDKIIVTRPHQLDGNPIEVKKAL 175          
The following BLAST results are available for this feature:
BLAST of RNA-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RBM383.467e-4478.89RNA binding motif protein 38 [Source:HGNC Symbol;A... [more]
RBM244.301e-4473.27RNA binding motif protein 24 [Source:HGNC Symbol;A... [more]
RBM382.903e-4378.02RNA binding motif protein 38 [Source:HGNC Symbol;A... [more]
RBM389.725e-4178.02RNA binding motif protein 38 [Source:HGNC Symbol;A... [more]
RBM242.747e-2075.44RNA binding motif protein 24 [Source:HGNC Symbol;A... [more]
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BLAST of RNA-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
sup-124.562e-3964.08SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189][more]
sup-125.059e-3864.08SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189][more]
H28G03.13.978e-1137.65pep chromosome:WBcel235:X:5216363:5219095:1 gene:W... [more]
H28G03.14.030e-1137.65pep chromosome:WBcel235:X:5216363:5218418:1 gene:W... [more]
msi-14.274e-1135.53MuSashI (Fly neural) family; Neural RNA-binding pr... [more]
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BLAST of RNA-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5
Match NameE-valueIdentityDescription
msi8.396e-1234.58gene:FBgn0011666 transcript:FBtr0333663[more]
msi8.444e-1234.58gene:FBgn0011666 transcript:FBtr0305219[more]
msi8.592e-1234.58gene:FBgn0011666 transcript:FBtr0305218[more]
msi8.592e-1234.58gene:FBgn0011666 transcript:FBtr0333664[more]
msi8.592e-1234.58gene:FBgn0011666 transcript:FBtr0084881[more]
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BLAST of RNA-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm24b2.523e-4576.29RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB... [more]
rbm24b1.204e-4476.29RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB... [more]
rbm24b1.783e-4476.29RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB... [more]
rbm24a3.045e-4474.23RNA binding motif protein 24a [Source:NCBI gene;Ac... [more]
rbm382.354e-4356.55RNA binding motif protein 38 [Source:ZFIN;Acc:ZDB-... [more]
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BLAST of RNA-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm244.494e-4475.26RNA binding motif protein 24 [Source:NCBI gene;Acc... [more]
nxph21.721e-4277.53neurexophilin 2 [Source:Xenbase;Acc:XB-GENE-951506... [more]
cirbp5.567e-1548.68cold inducible RNA binding protein [Source:NCBI ge... [more]
cirbp6.425e-1548.68cold inducible RNA binding protein [Source:NCBI ge... [more]
cirbp6.535e-1548.68cold inducible RNA binding protein [Source:NCBI ge... [more]
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BLAST of RNA-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rbm243.613e-4473.27RNA binding motif protein 24 [Source:MGI Symbol;Ac... [more]
Rbm382.524e-4078.02RNA binding motif protein 38 [Source:MGI Symbol;Ac... [more]
Rbm382.524e-4078.02RNA binding motif protein 38 [Source:MGI Symbol;Ac... [more]
Rbm387.291e-2483.33RNA binding motif protein 38 [Source:MGI Symbol;Ac... [more]
Rbm388.919e-1882.22RNA binding motif protein 38 [Source:MGI Symbol;Ac... [more]
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BLAST of RNA-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9I8B3|RB24B_XENLA9.710e-4475.26RNA-binding protein 24-B OS=Xenopus laevis OX=8355... [more]
sp|Q9BX46|RBM24_HUMAN2.066e-4373.27RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=... [more]
sp|Q6GQD3|RB24A_XENLA2.265e-4375.26RNA-binding protein 24-A OS=Xenopus laevis OX=8355... [more]
sp|Q76LC6|RBM24_DANRE2.299e-4374.23RNA-binding protein 24 OS=Danio rerio OX=7955 GN=r... [more]
sp|Q6P8A7|RBM24_XENTR2.381e-4375.26RNA-binding protein 24 OS=Xenopus tropicalis OX=83... [more]
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BLAST of RNA-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q5BW901.268e-5266.18SJCHGC05136 protein (Fragment) OS=Schistosoma japo... [more]
A0A094ZSI23.774e-5161.84RNA-binding protein 24 OS=Schistosoma haematobium ... [more]
A0A4Z2DQY81.318e-5066.18RNA-binding protein OS=Schistosoma japonicum OX=61... [more]
C1LGJ41.419e-5066.18RNA binding motif protein 24 OS=Schistosoma japoni... [more]
A0A146MGV36.708e-5080.41RRM domain-containing protein OS=Schistosoma manso... [more]
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BLAST of RNA-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm24a2.880e-4474.23RNA binding motif protein 24 [Source:NCBI gene;Acc... [more]
rbm24a4.655e-4465.81RNA binding motif protein 24 [Source:NCBI gene;Acc... [more]
ENSAMXT00000016054.21.407e-4173.20RNA binding motif protein 38 [Source:NCBI gene;Acc... [more]
rbm382.532e-3974.71RNA-binding protein 38-like [Source:NCBI gene;Acc:... [more]
ENSAMXT00000056649.14.040e-2581.48pep primary_assembly:Astyanax_mexicanus-2.0:APWO02... [more]
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BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm24a1.313e-4562.81RNA binding motif protein 24a [Source:NCBI gene;Ac... [more]
ENSPMAT00000004893.13.109e-1439.00pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:... [more]
HNRNPA06.718e-1439.74heterogeneous nuclear ribonucleoprotein A0 [Source... [more]
HNRNPA02.306e-1338.46heterogeneous nuclear ribonucleoprotein A0 [Source... [more]
HNRNPA2B11.439e-1235.42heterogeneous nuclear ribonucleoprotein A2/B1 [Sou... [more]
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BLAST of RNA-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5
Match NameE-valueIdentityDescription
SNP18.922e-933.71Component of U1 snRNP required for mRNA splicing v... [more]
NSR14.016e-836.96Nucleolar protein that binds nuclear localization ... [more]
PUB19.189e-836.56Poly (A)+ RNA-binding protein; abundant mRNP-compo... [more]
HRP11.270e-737.50Subunit of cleavage factor I; cleavage factor I is... [more]
NOP41.421e-738.16Nucleolar protein; essential for processing and ma... [more]
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BLAST of RNA-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5
Match NameE-valueIdentityDescription
EDO401041.576e-3058.43Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO297151.355e-1241.10Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO365222.846e-1239.29Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO405361.848e-1137.66Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO398793.103e-1138.16Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
rbm24b4.879e-4474.23RNA-binding protein 24 [Source:NCBI gene;Acc:10116... [more]
rbm24a8.545e-4474.23RNA binding motif protein 24 [Source:NCBI gene;Acc... [more]
RBM386.486e-4254.36RNA-binding protein 38 [Source:NCBI gene;Acc:10116... [more]
rbm381.784e-4075.00RNA-binding protein 38 [Source:NCBI gene;Acc:10115... [more]
cirbpa2.186e-1342.86cold inducible RNA binding protein [Source:NCBI ge... [more]
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BLAST of RNA-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000006741.10.000e+0100.00SMESG000006741.1[more]
SMESG000006741.14.194e-98100.00SMESG000006741.1[more]
SMESG000040788.11.059e-4973.39SMESG000040788.1[more]
SMESG000018666.13.164e-1235.79SMESG000018666.1[more]
SMESG000081075.18.333e-1241.98SMESG000081075.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009893 ID=SMED30009893|Name=RNA-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1106bp
CGAAACAATAAACTGTATTGTGAAGCATTAAACAGTTCTTATTGGCTATG
CTTAAACATTCTCATTCTGTCTGAATTGCAAAACTGATATCAATGCAATT
CTGTCCAATTGCATTTAAACTGTCAACTGATTGTTCAACTCATTTTATTA
GCAATGATTTCGAACCAGAATTTTCTTGACAATTTGTGCGATTCAAAATC
CATCATTAACAGCAAACCAACAAATAATCAACATCACAAAGATACGACAT
TAACGAAAATTTTTGTTGGTGGTTTACCCTATCATACGACAGATGAGAGC
TTGCGAGTATTTTTTGAATGCTTTGGTCCCATAGAAGAAGCGGTTGTCAT
TACGGACAGGCAGAGCGGCAAATCAAGAGGATATGGATTTGTTACAATGG
TGAATTGCGAGGACGCTTACCGTGCAATCAGCAATCCGAATCCTTGCATT
GATGGCCGAAAGGCGAATGTCAACTTAGCGATTCTTGGAGCTAAACCACG
AATTCTTCCCGGCGTAAATCTCAACTCTATGGCTCTCTCCAGGCTAGTCC
CAATACAATCACTAATGCCTCAAGTGCCATCATTATACAACAATATGATG
ATTTCGCCACTTTTAACAGCAAATCTAATTGGCATGCAGCAGCCAAATGT
TTTACCTCAAATAAATCTCACCTCTGTGAGAAATCCTCCACCTTTTGCCA
ATTCGATTTACAATCTTCCAACACCACCAGCCGTACCAGGAGCGATACGA
AACAACTATCCATCGTTGCCTTATTCCGTCAACAATGACACCTCGATGCT
ACAACAACTGCCACAGAGTACTTCTGGGACAACAACTCCATCAAATTCCC
AAATATATTTGGCATCTACCCAACAATACATGTCTGCTCTCAACTTCCAG
CAGCAGCTCAACAACATTAACCCGTTAGCGTCTTCTATAGGCCTGCTCAA
TAATACAGATGCTTCTGCAGCTCAAATTAACCAGTCACTACAGAATTATC
CAATAGATCCCTCGTTTTTTGTTTGATAACATTGGAGAAAATATTATTTG
TGTTGTTCGTATTATTAAGTAGGATAAAATAATATTCACTGTATGTATTA
AATAAA
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protein sequence of SMED30009893-orf-1

>SMED30009893-orf-1 ID=SMED30009893-orf-1|Name=SMED30009893-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=291bp
MISNQNFLDNLCDSKSIINSKPTNNQHHKDTTLTKIFVGGLPYHTTDESL
RVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCID
GRKANVNLAILGAKPRILPGVNLNSMALSRLVPIQSLMPQVPSLYNNMMI
SPLLTANLIGMQQPNVLPQINLTSVRNPPPFANSIYNLPTPPAVPGAIRN
NYPSLPYSVNNDTSMLQQLPQSTSGTTTPSNSQIYLASTQQYMSALNFQQ
QLNNINPLASSIGLLNNTDASAAQINQSLQNYPIDPSFFV*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0003729mRNA binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000028Category 2 cell
PLANA:0000034epidermis
PLANA:0000074oocyte
PLANA:0000231vitelline gland
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR037366BOULE/DAZ
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 35..107
e-value: 4.5E-24
score: 96.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 36..94
e-value: 3.3E-16
score: 58.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 34..115
score: 16.602
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 13..116
e-value: 3.3E-26
score: 93.8
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 24..224
NoneNo IPR availablePANTHERPTHR11176:SF22coord: 24..224
NoneNo IPR availableCDDcd12384RRM_RBM24_RBM38_likecoord: 34..109
e-value: 1.90644E-45
score: 146.221
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 22..110