SMED30009828
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009828 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30009828 aligns in the following genomic locations:
Homology
BLAST of SMED30009828 vs. Ensembl Human
Match: BIRC7 (baculoviral IAP repeat containing 7 [Source:HGNC Symbol;Acc:HGNC:13702]) HSP 1 Score: 47.3654 bits (111), Expect = 4.935e-6 Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 2 Query: 590 DEKIENEQERHTCNICMDDLVNIA-LQCGHLLCCNCSYQLIVCPLCNA 730 + ++ QE TC +C+D V+I + CGHL+C C+ L +CP+C A Sbjct: 135 EAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRA 182
BLAST of SMED30009828 vs. Ensembl Human
Match: BIRC7 (baculoviral IAP repeat containing 7 [Source:HGNC Symbol;Acc:HGNC:13702]) HSP 1 Score: 48.1358 bits (113), Expect = 5.583e-6 Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 2 Query: 590 DEKIENEQERHTCNICMDDLVNIA-LQCGHLLCCNCSYQLIVCPLCNA 730 + ++ QE TC +C+D V+I + CGHL+C C+ L +CP+C A Sbjct: 240 EAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRA 287
BLAST of SMED30009828 vs. Ensembl Human
Match: BIRC7 (baculoviral IAP repeat containing 7 [Source:HGNC Symbol;Acc:HGNC:13702]) HSP 1 Score: 47.7506 bits (112), Expect = 6.627e-6 Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 2 Query: 590 DEKIENEQERHTCNICMDDLVNIA-LQCGHLLCCNCSYQLIVCPLCNA 730 + ++ QE TC +C+D V+I + CGHL+C C+ L +CP+C A Sbjct: 222 EAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRA 269
BLAST of SMED30009828 vs. Ensembl Zebrafish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-050628-1]) HSP 1 Score: 51.2174 bits (121), Expect = 4.667e-7 Identity = 22/66 (33.33%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C E + + + +ER TC IC+D+ + + QCGH C +CS L CP+C Sbjct: 812 TEVECSPSSENSEQHHLLEQLQSRYRQMEERITCPICIDNHIRLVFQCGHASCIDCSSALKTCPIC 877
BLAST of SMED30009828 vs. Ensembl Zebrafish
Match: birc7 (baculoviral IAP repeat containing 7 [Source:ZFIN;Acc:ZDB-GENE-070615-35]) HSP 1 Score: 49.6766 bits (117), Expect = 9.832e-7 Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 2 Query: 554 EEFYRKNHKNTK--DEKIENEQERHTCNICMDDLVNIA-LQCGHL-LCCNCSYQLIVCPLCNA 730 + F+ N + + DE++ QE TC +CMD LV++ + CGHL +C +C+ L CP+C A Sbjct: 220 QSFFNMNGRGVRKNDEQLRQLQEERTCKVCMDKLVSMVFIPCGHLVVCSDCAASLRHCPICRA 282
BLAST of SMED30009828 vs. Ensembl Zebrafish
Match: birc7 (baculoviral IAP repeat containing 7 [Source:ZFIN;Acc:ZDB-GENE-070615-35]) HSP 1 Score: 46.9802 bits (110), Expect = 8.099e-6 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 2 Query: 584 TKDEKIENEQERHTCNICMDDLVNIA-LQCGHL-LCCNCSYQLIVCPLCNA 730 + +E++ QE TC +CMD LV++ + CGHL +C +C+ L CP+C A Sbjct: 268 SPEEQLRQLQEERTCKVCMDKLVSMVFIPCGHLVVCSDCAASLRHCPICRA 318
BLAST of SMED30009828 vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 53.9138 bits (128), Expect = 8.632e-8 Identity = 23/66 (34.85%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C +E +K + +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 884 TEVECSPSLEVSDQKKVMEELQNRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSTSLTACPIC 949
BLAST of SMED30009828 vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 53.9138 bits (128), Expect = 9.016e-8 Identity = 23/66 (34.85%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C +E +K + +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 871 TEVECSPSLEVSDQKKVMEELQNRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSTSLTACPIC 936
BLAST of SMED30009828 vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 53.9138 bits (128), Expect = 9.021e-8 Identity = 23/66 (34.85%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C +E +K + +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 874 TEVECSPSLEVSDQKKVMEELQNRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSTSLTACPIC 939
BLAST of SMED30009828 vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 53.9138 bits (128), Expect = 9.295e-8 Identity = 23/66 (34.85%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C +E +K + +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 839 TEVECSPSLEVSDQKKVMEELQNRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSTSLTACPIC 904
BLAST of SMED30009828 vs. Ensembl Xenopus
Match: coa7 (cytochrome c oxidase assembly factor 7 (putative) [Source:Xenbase;Acc:XB-GENE-6258829]) HSP 1 Score: 50.0618 bits (118), Expect = 1.759e-6 Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 2 Query: 593 EKIENE----QERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 E+++N +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 893 EELQNRYRQMEERITCPICIDNHIKLVFQCGHGSCTECSTSLTACPIC 940
BLAST of SMED30009828 vs. UniProt/SwissProt
Match: sp|Q5ZIJ9|MIB2_CHICK (E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus OX=9031 GN=MIB2 PE=2 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.126e-7 Identity = 24/66 (36.36%), Postives = 33/66 (50.00%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C E ++ + +ER TC IC+DD + + QCGH C +CS L VCP+C Sbjct: 877 TEVECSPSSESTDQRKLMEELQNRYRQMEERITCPICIDDQIKLVFQCGHGSCPDCSTALTVCPIC 942
BLAST of SMED30009828 vs. Ensembl Cavefish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:103034310]) HSP 1 Score: 53.1434 bits (126), Expect = 9.684e-8 Identity = 22/66 (33.33%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C + + N + +ER TC IC+D+ + + QCGH C +CS L CP+C Sbjct: 940 TEVECSPNSDNSEQHNLLEQLQSRYRQMEERITCPICIDNQIKLVFQCGHASCIDCSAALKTCPIC 1005
BLAST of SMED30009828 vs. Ensembl Cavefish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:103034310]) HSP 1 Score: 53.1434 bits (126), Expect = 9.924e-8 Identity = 22/66 (33.33%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C + + N + +ER TC IC+D+ + + QCGH C +CS L CP+C Sbjct: 870 TEVECSPNSDNSEQHNLLEQLQSRYRQMEERITCPICIDNQIKLVFQCGHASCIDCSAALKTCPIC 935
BLAST of SMED30009828 vs. Ensembl Cavefish
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:103034310]) HSP 1 Score: 53.1434 bits (126), Expect = 1.004e-7 Identity = 22/66 (33.33%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE C + + N + +ER TC IC+D+ + + QCGH C +CS L CP+C Sbjct: 934 TEVECSPNSDNSEQHNLLEQLQSRYRQMEERITCPICIDNQIKLVFQCGHASCIDCSAALKTCPIC 999
BLAST of SMED30009828 vs. Ensembl Cavefish
Match: birc7 (baculoviral IAP repeat-containing protein 7 [Source:NCBI gene;Acc:103036970]) HSP 1 Score: 47.7506 bits (112), Expect = 4.845e-6 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 2 Query: 584 TKDEKIENEQERHTCNICMDDLVNIA-LQCGHL-LCCNCSYQLIVCPLCNA 730 + +E++ QE TC +CMD LV++ + CGHL +C +C+ L CP+C A Sbjct: 365 SAEEQLRQLQEERTCKVCMDKLVSMVFIPCGHLVVCTDCAASLRHCPICRA 415
BLAST of SMED30009828 vs. Ensembl Cavefish
Match: birc7 (baculoviral IAP repeat-containing protein 7 [Source:NCBI gene;Acc:103036970]) HSP 1 Score: 47.3654 bits (111), Expect = 5.883e-6 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 2 Query: 584 TKDEKIENEQERHTCNICMDDLVNIA-LQCGHLLCC-NCSYQLIVCPLCNA 730 + +E++ QE TC +CMD LV++ + CGHL+ C +C+ L CP+C A Sbjct: 343 SAEEQLRQLQEERTCKVCMDKLVSMVFIPCGHLVVCTDCAASLRHCPICRA 393
BLAST of SMED30009828 vs. Ensembl Sea Lamprey
Match: birc2 (baculoviral IAP repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-030825-6]) HSP 1 Score: 48.1358 bits (113), Expect = 7.712e-7 Identity = 21/49 (42.86%), Postives = 34/49 (69.39%), Query Frame = 2 Query: 590 DEKIENEQERHTCNICMDDLVNIA-LQCGHLLCC-NCSYQLIVCPLCNA 730 +E+++ QE+HTC +CMD V++ + CGHL+ C +C+ L CP+C A Sbjct: 517 EEELKRLQEQHTCKVCMDKEVSVVFIPCGHLVVCRDCASSLRKCPICRA 565
BLAST of SMED30009828 vs. Ensembl Nematostella
Match: EDO30381 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T0Y6]) HSP 1 Score: 46.595 bits (109), Expect = 3.777e-6 Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 2 Query: 593 EKIENEQERHTCNICMDDLVNIA-LQCGHLLCC-NCSYQLIVCPLCNA 730 +K+E QE C ICMD V I L CGHL CC C+ + +CP+C A Sbjct: 274 QKLERMQEERLCKICMDAEVGIVFLPCGHLSCCPGCAEGMELCPMCRA 321
BLAST of SMED30009828 vs. Ensembl Medaka
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:101175479]) HSP 1 Score: 54.6842 bits (130), Expect = 3.024e-8 Identity = 23/66 (34.85%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE +C E + N + +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 1007 TEVDCSPGTENSEQHNLLEQLQSRYRQMEERITCPICIDNHIKLVFQCGHASCIECSAALKTCPIC 1072
BLAST of SMED30009828 vs. Ensembl Medaka
Match: mib2 (mindbomb E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:101175479]) HSP 1 Score: 54.299 bits (129), Expect = 3.638e-8 Identity = 23/66 (34.85%), Postives = 32/66 (48.48%), Query Frame = 2 Query: 527 TETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLC 724 TE +C E + N + +ER TC IC+D+ + + QCGH C CS L CP+C Sbjct: 951 TEVDCSPGTENSEQHNLLEQLQSRYRQMEERITCPICIDNHIKLVFQCGHASCIECSAALKTCPIC 1016
BLAST of SMED30009828 vs. Ensembl Medaka
Match: ENSORLT00000012200.2 (baculoviral IAP repeat containing 7 [Source:NCBI gene;Acc:101164308]) HSP 1 Score: 48.9062 bits (115), Expect = 1.583e-6 Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 521 ACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIA-LQCGHLLCC-NCSYQLIVCPLCNA 730 + + + +A+ R + + +E + QE TC +CMD LV+I + CGHL+ C +C+ L CP+C A Sbjct: 281 SSSAGDGRAQTPARERAVKEASPEELLRQLQEERTCKVCMDKLVSIVFIPCGHLVVCGDCAASLRHCPICRA 352
BLAST of SMED30009828 vs. Ensembl Medaka
Match: ENSORLT00000039931.1 (baculoviral IAP repeat containing 7 [Source:NCBI gene;Acc:101164308]) HSP 1 Score: 48.9062 bits (115), Expect = 1.583e-6 Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 521 ACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIA-LQCGHLLCC-NCSYQLIVCPLCNA 730 + + + +A+ R + + +E + QE TC +CMD LV+I + CGHL+ C +C+ L CP+C A Sbjct: 281 SSSAGDGRAQTPARERAVKEASPEELLRQLQEERTCKVCMDKLVSIVFIPCGHLVVCGDCAASLRHCPICRA 352
BLAST of SMED30009828 vs. Ensembl Medaka
Match: ENSORLT00000034629.1 (baculoviral IAP repeat containing 7 [Source:NCBI gene;Acc:101164308]) HSP 1 Score: 48.1358 bits (113), Expect = 3.354e-6 Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 2 Query: 521 ACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIA-LQCGHLLCC-NCSYQLIVCPLCNA 730 + + + +A+ R + + +E + QE TC +CMD LV+I + CGHL+ C +C+ L CP+C A Sbjct: 317 SSSAGDGRAQTPARERAVKEASPEELLRQLQEERTCKVCMDKLVSIVFIPCGHLVVCGDCAASLRHCPICRA 388
BLAST of SMED30009828 vs. Planmine SMEST
Match: SMESG000076369.1 (SMESG000076369.1) HSP 1 Score: 307.76 bits (787), Expect = 9.432e-104 Identity = 167/243 (68.72%), Postives = 205/243 (84.36%), Query Frame = 2 Query: 2 AEPKLIRALFDKSSSLLQQSVLEILLCKAAHNDDSVMFDYFIKIEILRPNQLDSGETLLTFLIKENKTQFVWKILESINKMKFLHLKNRSKQGLLEIAIEKEDIDLVEFLIHESGDLDSENNDGKTPLVQLLEKISISTPGNFXXXXXXXXXXXXXXXXXXYKITSQGRQAIDACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLCNA 730 E KLIRALFDKSSS+LQQSV+E LL +AAHNDD+VMFD+ I +EIL+PN+L+ GETLLT L+KE K FVWKILESINK KF+ LKN + QG LEIAIE ++ DL+EFLIHESG+ ++E +GKT L+QLL KISIST + KRK+I+ I+SII+LGGDIY++TSQG++ IDAC ++ KAEIEEFYRK HK+ K+EK EN++ER+ CNICMD+LVNIALQCGHLLC NCS QL +CPLCNA Sbjct: 177 GERKLIRALFDKSSSMLQQSVVENLLYEAAHNDDNVMFDHLIGMEILQPNELEGGETLLTVLMKECKINFVWKILESINKTKFVQLKNSNNQGPLEIAIENDEFDLIEFLIHESGEFNTEKANGKTTLIQLLGKISISTAPHLKRKVILLIRSIIVLGGDIYQVTSQGQRTIDACIDSKAKAEIEEFYRKIHKDMKEEKNENDKERNLCNICMDNLVNIALQCGHLLCGNCSDQLFICPLCNA 419
BLAST of SMED30009828 vs. Planmine SMEST
Match: SMESG000040665.1 (SMESG000040665.1) HSP 1 Score: 295.434 bits (755), Expect = 3.950e-100 Identity = 164/242 (67.77%), Postives = 198/242 (81.82%), Query Frame = 2 Query: 2 AEPKLIRALFDKSSSLLQQSVLEILLCKAAHNDDSVMFDYFIKIEILRPNQLDSGETLLTFLIKENKTQFVWKILESINKMKFLHLKNRSKQGLLEIAIEKEDIDLVEFLIHESGDLDSENNDGKTPLVQLLEKISISTPGNFXXXXXXXXXXXXXXXXXXYKITSQGRQAIDACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLCN 727 AE KLIRALFDKSSS LQQSV+E LL ++AHNDD+VMFD+ I +EI++PN+L+ GETLLT L+KE+K FVWKILES NK KF+ LKNR+ +G LEIAIE ++ DL+EFLIHESG+ +SEN DG+T L+QLL KISIST N KRK+I+ I+SIILLGGDIY +TS+G++ IDACT++N KAEIEEFYRK+HK + ER C ICMD+LVNIALQCGHLLC NCS QL VCPLCN Sbjct: 103 AERKLIRALFDKSSSGLQQSVVENLLYESAHNDDNVMFDHLIGMEIVQPNELEGGETLLTVLMKESKINFVWKILESNNKTKFVQLKNRNNEGPLEIAIENDEFDLIEFLIHESGEFNSENADGQTALIQLLGKISISTASNLKRKVILLIRSIILLGGDIYHVTSEGQRTIDACTDSNAKAEIEEFYRKHHK---------DNERILCKICMDNLVNIALQCGHLLCGNCSDQLFVCPLCN 335
BLAST of SMED30009828 vs. Planmine SMEST
Match: SMESG000076363.1 (SMESG000076363.1) HSP 1 Score: 303.908 bits (777), Expect = 1.287e-99 Identity = 165/243 (67.90%), Postives = 203/243 (83.54%), Query Frame = 2 Query: 2 AEPKLIRALFDKSSSLLQQSVLEILLCKAAHNDDSVMFDYFIKIEILRPNQLDSGETLLTFLIKENKTQFVWKILESINKMKFLHLKNRSKQGLLEIAIEKEDIDLVEFLIHESGDLDSENNDGKTPLVQLLEKISISTPGNFXXXXXXXXXXXXXXXXXXYKITSQGRQAIDACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLCNA 730 E KLIRALFDKSSS+LQQSV+E LL +AAHNDD+VMFD+ I +EIL+PN+L+ GETLLT L+KE K FVWKILESINK KF+ LKN + QG LEIAIE ++ DL+EFLIHESG+ ++E GKT L+QLL KISIST + KR++I+ I+SII+LGGDIY++TSQ ++ IDAC ++ KAEIEEFYRK HK+ K+EK EN++ER+ CNICMD+LVNIALQCGHLLC NCS QL +CPLCNA Sbjct: 400 GERKLIRALFDKSSSMLQQSVVENLLYEAAHNDDNVMFDHLIGMEILQPNELEGGETLLTVLMKECKINFVWKILESINKTKFVQLKNSNNQGPLEIAIENDEFDLIEFLIHESGEFNTEKAYGKTTLIQLLGKISISTAPHLKRRVILLIRSIIVLGGDIYQVTSQRQRTIDACIDSKAKAEIEEFYRKIHKDMKEEKNENDKERNLCNICMDNLVNIALQCGHLLCGNCSDQLFICPLCNA 642
BLAST of SMED30009828 vs. Planmine SMEST
Match: SMESG000076363.1 (SMESG000076363.1) HSP 1 Score: 303.523 bits (776), Expect = 1.936e-99 Identity = 165/243 (67.90%), Postives = 203/243 (83.54%), Query Frame = 2 Query: 2 AEPKLIRALFDKSSSLLQQSVLEILLCKAAHNDDSVMFDYFIKIEILRPNQLDSGETLLTFLIKENKTQFVWKILESINKMKFLHLKNRSKQGLLEIAIEKEDIDLVEFLIHESGDLDSENNDGKTPLVQLLEKISISTPGNFXXXXXXXXXXXXXXXXXXYKITSQGRQAIDACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLCNA 730 E KLIRALFDKSSS+LQQSV+E LL +AAHNDD+VMFD+ I +EIL+PN+L+ GETLLT L+KE K FVWKILESINK KF+ LKN + QG LEIAIE ++ DL+EFLIHESG+ ++E GKT L+QLL KISIST + KR++I+ I+SII+LGGDIY++TSQ ++ IDAC ++ KAEIEEFYRK HK+ K+EK EN++ER+ CNICMD+LVNIALQCGHLLC NCS QL +CPLCNA Sbjct: 408 GERKLIRALFDKSSSMLQQSVVENLLYEAAHNDDNVMFDHLIGMEILQPNELEGGETLLTVLMKECKINFVWKILESINKTKFVQLKNSNNQGPLEIAIENDEFDLIEFLIHESGEFNTEKAYGKTTLIQLLGKISISTAPHLKRRVILLIRSIIVLGGDIYQVTSQRQRTIDACIDSKAKAEIEEFYRKIHKDMKEEKNENDKERNLCNICMDNLVNIALQCGHLLCGNCSDQLFICPLCNA 650
BLAST of SMED30009828 vs. Planmine SMEST
Match: SMESG000076385.1 (SMESG000076385.1) HSP 1 Score: 300.827 bits (769), Expect = 3.056e-99 Identity = 165/243 (67.90%), Postives = 202/243 (83.13%), Query Frame = 2 Query: 2 AEPKLIRALFDKSSSLLQQSVLEILLCKAAHNDDSVMFDYFIKIEILRPNQLDSGETLLTFLIKENKTQFVWKILESINKMKFLHLKNRSKQGLLEIAIEKEDIDLVEFLIHESGDLDSENNDGKTPLVQLLEKISISTPGNFXXXXXXXXXXXXXXXXXXYKITSQGRQAIDACTETNCKAEIEEFYRKNHKNTKDEKIENEQERHTCNICMDDLVNIALQCGHLLCCNCSYQLIVCPLCNA 730 E KLIRALFDKSSS+LQQSV+E LL +AAHNDD+VMFD+ I +EIL+PN+L+ GETLLT L+KE K FVWKILESINK KF+ LKN + QG L+IAIE ++ DL+EFLIHESG+ +SEN DG+T L QLL KISIST + KRK+I+ I+SII+LGGDIY++TSQG++ IDAC ++ KAEIEEFY K HK+ K+EK EN++E + C ICMD+LVNIALQCGHLLC NCS QL +CPLCNA Sbjct: 325 GERKLIRALFDKSSSMLQQSVVENLLYEAAHNDDNVMFDHLIGMEILQPNELEGGETLLTVLMKECKINFVWKILESINKTKFVQLKNSNNQGPLKIAIENDEFDLIEFLIHESGEFNSENADGQTTLFQLLGKISISTAPHLKRKVILLIRSIIVLGGDIYQVTSQGQRTIDACIDSKAKAEIEEFYTKIHKDMKEEKNENDKETNLCKICMDNLVNIALQCGHLLCGNCSDQLFICPLCNA 567 The following BLAST results are available for this feature:
BLAST of SMED30009828 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of SMED30009828 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30009828 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30009828 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of SMED30009828 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of SMED30009828 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30009828 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of SMED30009828 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30009828 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of SMED30009828 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of SMED30009828 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30009828 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30009828 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30009828 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009828 ID=SMED30009828|Name=SMED30009828|organism=Schmidtea mediterranea sexual|type=transcript|length=731bpback to top protein sequence of SMED30009828-orf-1 >SMED30009828-orf-1 ID=SMED30009828-orf-1|Name=SMED30009828-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=243bp AEPKLIRALFDKSSSLLQQSVLEILLCKAAHNDDSVMFDYFIKIEILRPNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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