SMED30009798

Overview
NameSMED30009798
Smed IDSMED30009798
Length (bp)812
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009798 (SMED30009798) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009798 (SMED30009798) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009798 (SMED30009798) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009798 (SMED30009798) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30009798

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30009798SMESG000051529.1 SmedASXL_007194SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30009798SMESG000051529.1 dd_Smed_v4_18270_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30009798SMESG000051529.1 SMESG000051528.1 SMESG000017358.1 Contig50378newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30009798SMESG000051529.1 SMESG000051528.1 SMESG000017358.1 Contig50378uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30009798SMESG000051529.1 SMESG000051528.1 SMESG000040020.1 SMESG000017358.1 Contig28837newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30009798SMESG000051529.1 SMESG000051528.1 SMESG000040020.1 SMESG000017358.1 Contig28837uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30009798SMESG000051529.1 dd_Smed_v6_18270_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
epidermisSMED30009798SMESG000051529.1 dd_Smed_v4_18270_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009798 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000751:103725..109475 -3879
Homology
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BLAST of SMED30009798 vs. TrEMBL
Match: A0A2G8KM90 (Putative ubiquitin-conjugating enzyme E2 U-like OS=Stichopus japonicus OX=307972 GN=BSL78_13973 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.723e-8
Identity = 42/149 (28.19%), Postives = 72/149 (48.32%), Query Frame = 2 
Query:  347 EISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 793
            ++SF +YL TW GIATSKP  + +N  L  I+  +KL + H G+ L      +++Q ++HN  +YGNF KK             +    + + L+  S +K I   ++S         +    +E     + +++DL+ WT  L   D+
Sbjct:  188 KVSFDEYLTTWTGIATSKPQINMKNPLLEAIKRDSKLQAAHFGLTLEDLQEQMKKQLNEHNAIMYGNFGKK------------QKTQDAQERRLDQISKMKKIYLPRRSAPPP-----STAAQSESGEPWDGDVEDLVAWTNELDEDDL 319
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BLAST of SMED30009798 vs. TrEMBL
Match: V3Z724 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_235267 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.938e-8
Identity = 45/152 (29.61%), Postives = 69/152 (45.39%), Query Frame = 2 
Query:  350 ISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSE-KSSKHFIENNLFHNE---DESADEAEMKDLMEWTENLKTCDI 793
            +SF DY  TW GIATSK  +   N  L+++R + +L   H  +        I++Q ++H M +YG F  KP +            D+  +K    Q   K+ +  + S   +S+  +     H      E   E E+ DL+EWT NL T  I
Sbjct:   57 LSFEDYYTTWCGIATSKSKEVDTNPLLDKLREKPELQKTHMALRPEDIEEQIKKQIEEHTMLMYGKFDSKPTVQ-----------DEKEAKLARLQKMKKIYLPPRVSPSPASQDIVLGGSLHTSLHGKEEPWEKEVDDLVEWTNNLDTTTI 197
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BLAST of SMED30009798 vs. TrEMBL
Match: A0A433T1T1 (UBIQUITIN_CONJUGAT_2 domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_016726 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.789e-7
Identity = 46/148 (31.08%), Postives = 71/148 (47.97%), Query Frame = 2 
Query:  347 EISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQL-SFNDGHNENY-RIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKT 784
            ++SF DY  TW GIATSK   D+ N +L  IR   KL  IH G+        +++Q ++H++ +YG F  +P + S  D    N  R+ K      +     +  I I +S  + +           +ES  E E+ DL+ WT NL +
Sbjct:  197 KLSFDDYHTTWCGIATSKTRPDAINPFLETIRGNPKLQEIHLGVPREELEDQMKKQMEEHSILMYGKFKSQPSVESVRDAKIANLERMKKIYFPPRQSPLPPREDIDIGKSLPALQ----------ANESNWEKEVDDLVNWTNNLDS 334
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BLAST of SMED30009798 vs. TrEMBL
Match: C3YQR1 (UBIQUITIN_CONJUGAT_2 domain-containing protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_130394 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.751e-7
Identity = 65/260 (25.00%), Postives = 110/260 (42.31%), Query Frame = 2 
Query:   11 PFHPNSKYSY*YFPQLKYPSYSVDSKTGQIGLEMNKFKQE--NYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFXXXXXXXXXXXXXXXXEISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNLFHNEDESAD--EAEMKDLMEWTENL 778
            PFHPN                 V S TG+  ++     QE    + L+    S   LL NP +E+ + N  A ++ ++N  +Y  +V     +         +        K  ++SF +Y  TW+GIATSK     +N  L  IR+     S H+G+ +      +++Q ++HN  +YG F        + G  ++ R      K ++     K+ +  + +E S+    +   F    ES +  E E+ DL+ WT NL
Sbjct:   79 PFHPN-----------------VHSITGRPCIDYLDNIQEWKESYSLVHVLLSIQTLLSNPVVEDAV-NDDAARMLVTNPDRYLEMV----RSCVDASKRVHAPAAKTAGIKTRKVSFDEYHTTWSGIATSKATPAMKNPLLESIRDDPIRQSSHYGLTVEQLQDQMKRQLEEHNALMYGKFV-------DHGKTDDQR----EQKLMKINQMRKVYMSKRITEPSTPTPSDTKEFAPPKESEEPWEKEVDDLVAWTHNL 305
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BLAST of SMED30009798 vs. TrEMBL
Match: K1QM65 (Ubiquitin-conjugating enzyme E2 U OS=Crassostrea gigas OX=29159 GN=CGI_10008530 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.872e-7
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:  350 ISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKK 559
            +SF DY +TW+GIATSKP  ++ N  L  I+++  L   H GI        +++Q ++HN  +YGNF  K
Sbjct:  195 LSFDDYFMTWSGIATSKPTIETPNPLLEAIKDKPGLQRAHLGIPQEEIQDQMKRQLEEHNALMYGNFKMK 264
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BLAST of SMED30009798 vs. Planmine SMEST
Match: SMESG000051529.1 (SMESG000051529.1)

HSP 1 Score: 444.891 bits (1143), Expect = 9.487e-159
Identity = 238/262 (90.84%), Postives = 242/262 (92.37%), Query Frame = 2 
Query:    8 PPFHPNSKYSY*YFPQLKYPSYSVDSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFXXXXXXXXXXXXXXXXEISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 793
            PPFHPN                 +DSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPN+DSENLYLNQIRNQ +LLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDG NENYRIDK RSKALEYQSN+KMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI
Sbjct:   89 PPFHPN-----------------IDSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPNEDSENLYLNQIRNQKQLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGQNENYRIDKLRSKALEYQSNMKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 333
[Close]
BLAST of SMED30009798 vs. Planmine SMEST
Match: SMESG000051529.1 (SMESG000051529.1)

HSP 1 Score: 444.506 bits (1142), Expect = 1.351e-158
Identity = 238/262 (90.84%), Postives = 242/262 (92.37%), Query Frame = 2 
Query:    8 PPFHPNSKYSY*YFPQLKYPSYSVDSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFXXXXXXXXXXXXXXXXEISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 793
            PPFHPN                 +DSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPN+DSENLYLNQIRNQ +LLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDG NENYRIDK RSKALEYQSN+KMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI
Sbjct:   86 PPFHPN-----------------IDSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPNEDSENLYLNQIRNQKQLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGQNENYRIDKLRSKALEYQSNMKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 330
[Close]
BLAST of SMED30009798 vs. Planmine SMEST
Match: SMESG000051529.1 (SMESG000051529.1)

HSP 1 Score: 443.736 bits (1140), Expect = 1.739e-158
Identity = 238/262 (90.84%), Postives = 242/262 (92.37%), Query Frame = 2 
Query:    8 PPFHPNSKYSY*YFPQLKYPSYSVDSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFXXXXXXXXXXXXXXXXEISFLDYLLTWNGIATSKPNKDSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 793
            PPFHPN                 +DSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPN+DSENLYLNQIRNQ +LLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDG NENYRIDK RSKALEYQSN+KMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI
Sbjct:   78 PPFHPN-----------------IDSKTGQIGLEMNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYERLVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPNEDSENLYLNQIRNQKQLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKKPQLSFNDGQNENYRIDKLRSKALEYQSNMKMIIHIKQSEKSSKHFIENNLFHNEDESADEAEMKDLMEWTENLKTCDI 322
The following BLAST results are available for this feature:
BLAST of SMED30009798 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2G8KM901.723e-828.19Putative ubiquitin-conjugating enzyme E2 U-like OS... [more]
V3Z7241.938e-829.61Uncharacterized protein OS=Lottia gigantea OX=2251... [more]
A0A433T1T11.789e-731.08UBIQUITIN_CONJUGAT_2 domain-containing protein OS=... [more]
C3YQR12.751e-725.00UBIQUITIN_CONJUGAT_2 domain-containing protein OS=... [more]
K1QM655.872e-740.00Ubiquitin-conjugating enzyme E2 U OS=Crassostrea g... [more]
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BLAST of SMED30009798 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009798 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000051529.19.487e-15990.84SMESG000051529.1[more]
SMESG000051529.11.351e-15890.84SMESG000051529.1[more]
SMESG000051529.11.739e-15890.84SMESG000051529.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009798 ID=SMED30009798|Name=SMED30009798|organism=Schmidtea mediterranea sexual|type=transcript|length=812bp
CCGATCTCCTCCTTTCCATCCAAATAGTAAATATTCGTATTGATATTTTC
CACAATTGAAATATCCATCTTATTCAGTTGATTCCAAAACCGGGCAAATC
GGTTTAGAAATGAATAAATTTAAGCAGGAAAATTATTTTGATTTACTTTT
GTTCTGTCAATCAACTATCGATTTGTTGAAAAATCCGAATTTAGAAAACA
ATATTTCCAATATTCTCGCTATGAAATTGTTTCTTTCCAATCGTCAGCAA
TACGAGAGATTGGTTGTCCAAGGCAAACTGAATCAAGAGTCGACATTCGT
GTCTGCCAGATCATCAGTAAGAAATGCCAGACGTAGAAAACGAAATGAAA
TCAGTTTCCTCGATTATTTGCTGACTTGGAATGGAATTGCCACATCTAAA
CCGAATAAAGATTCTGAGAATTTATATTTAAATCAAATCAGAAATCAGAC
AAAGCTTTTGTCCATTCACCACGGAATTGATCTACACAGTGCTGGTTCAC
TTATCAGGCAGCAAGAAGATAAACATAATATGTATTTATATGGAAATTTT
GCTAAAAAGCCTCAGCTTTCCTTTAATGACGGACATAATGAAAACTATCG
CATAGACAAATTTAGAAGCAAAGCTCTTGAATATCAGTCGAATTTGAAAA
TGATTATCCACATAAAACAATCAGAAAAATCTTCGAAACATTTTATTGAA
AATAATCTGTTCCATAATGAAGATGAATCAGCAGATGAAGCAGAAATGAA
AGATCTTATGGAATGGACTGAGAACTTAAAGACTTGTGATATTTGAAGAT
ATTATCAATAAA
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protein sequence of SMED30009798-orf-1

>SMED30009798-orf-1 ID=SMED30009798-orf-1|Name=SMED30009798-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=229bp
MNKFKQENYFDLLLFCQSTIDLLKNPNLENNISNILAMKLFLSNRQQYER
LVVQGKLNQESTFVSARSSVRNARRRKRNEISFLDYLLTWNGIATSKPNK
DSENLYLNQIRNQTKLLSIHHGIDLHSAGSLIRQQEDKHNMYLYGNFAKK
PQLSFNDGHNENYRIDKFRSKALEYQSNLKMIIHIKQSEKSSKHFIENNL
FHNEDESADEAEMKDLMEWTENLKTCDI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000418head
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding