G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30009680
Length (bp)1207
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30009680) t-SNE clustered cells

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30009680) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30009680) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30009680) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30009680

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30009680SMESG000040061.1 SMESG000040060.1 SmedASXL_015903SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30009680SMESG000040061.1 dd_Smed_v4_14973_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009680SMESG000040061.1 dd_Smed_v4_14973_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30009680SMESG000040061.1 dd_Smed_v6_14973_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
dorsal-ventral muscle cellSMED30009680SMESG000040061.1 dd_Smed_v4_14973_0_1dd_Smed_v4PMID:30471994
Scimone et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A504YBU0 (Type-1 angiotensin II receptor A OS=Fasciola gigantica OX=46835 GN=FGIG_09800 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.584e-24
Identity = 90/299 (30.10%), Postives = 162/299 (54.18%), Query Frame = 3
Query:  291 RFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLY-DSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTGSGKETDTICESKHQLTQ 1184
            RF +Y   LA+  ++ L FN+ +DDF GRGL + ++     K+D +  F CKL+E+I   MYF ++Y++VV  +DR   + K   F +   + + A  ICV++  + +I+ +PL++   +  L  +    +N +C++  D   ++  + F+ +  F +P  IV+I N  I   + + +  RKRL  A  ++     G  ++ G+LA+S+ FLL+ MP+   +++R  +T       S   V + + S+F SS+KD+ YAINF L + +L  FR+   S+F     +  T  ++    +Q
Sbjct:   47 RFSIYAICLAISNAITLTFNTVVDDFMGRGLFYATNHTWYYKLDATSQFGCKLVEYIANSMYFTTSYIIVVFTLDRLLTVRKPITFYSIHHR-RWATGICVVIYLLALIVNTPLIY---VQTLVVDRHSRTNFTCRMIEDHPVAKFTITFEVIFTFTVPFCIVLILNCLIGAALWKLKHERKRLVPADRVRNQLEMG--RVTGHLALSTAFLLLYMPMVCLVLIRLHLTLTHVDRHSPYAVKIIDLSRFFSSMKDITYAINFPLYMVYLSNFRRRFLSIFCPCFLQVTTHRQATRAFSQ 339          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A193KUG5 (GCR157 OS=Schmidtea mediterranea OX=79327 GN=gcr157 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.283e-22
Identity = 105/289 (36.33%), Postives = 159/289 (55.02%), Query Frame = 3
Query:  288 GRFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYN------INNLSYENSHFSNKSCKLYDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSM--KLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFT 1130
             RF +Y   LA+V  V L+FN+FLDDF GRG+ + +  +I IKID      C+ M FIP  MY A+AY++V ++VDRY +++K  ++ A  + V+     CV+++ + ++L  PLL  Y       +NN S EN       C L +S  +   LY +SL    +P  I+I  N FI+ K      L  R SS S I +  NS S   + +G+LA+S  F ++ +PL+I I++R +     KA   D  + L   SKF SS+KD+ +  N +L + F+  FRK  K + T
Sbjct:   51 NRFAIYSSVLAIVNIVILVFNTFLDDFLGRGISYATDWKIVIKIDVYSTGTCRFMNFIPNAMYCANAYIIVALSVDRYLLLTKPLKYNA-DKGVRGTCLTCVIIVGMALVLNFPLLLTYQLVINDFVNN-SVENILNPEFECSLDNSALAHFELYSKSLFTLAIPTGIIIFLNAFIIFK------LLFRYSSQSFIIQGANSLSEQSRFVGHLAVSCLFSVLFLPLSIVIVMRLLHNS--KADNFDY-LFLKALSKFLSSVKDISFGGNIFLYLLFMPNFRKRCKQMVT 328          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A2H1CI12 (7 transmembrane receptor OS=Fasciola hepatica OX=6192 GN=D915_05571 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.014e-22
Identity = 87/280 (31.07%), Postives = 154/280 (55.00%), Query Frame = 3
Query:  291 RFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLY-DSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLF 1127
            RF +Y   LA+  ++ L FN+ +DDF GRGL + ++     K+D +  F CKL+E+I   MYF ++Y++VV  +DR   + K   F +   + + A  ICV++  + +I+  PL++   +  L  +    +N +C++  D   ++  + F+ +  F +P  IV+I N  I   + + +  RKRL  A  ++     G  ++ G+LA+S+ FLL+ MP+   +++R  +T       S   V + + S+F SS+KD+ YAINF L + +L  FR+    +F
Sbjct:   42 RFSIYAICLAISNAITLTFNTVVDDFMGRGLFYATNHTWYYKLDATSQFGCKLVEYISNSMYFTTSYIIVVFTLDRLLTVRKPITFYSIHHR-RWATGICVVIYLLALIVNIPLIY---VQTLVADRHSRTNFTCRMIEDHPVAKFSITFEVIFTFTVPFFIVLILNCLIGAALWKLKHERKRLVPADRVRNQLEMG--RVTGHLALSTAFLLLYMPMVCLVLIRLHLTLIHVDRHSPYAVKIIDLSRFFSSMKDITYAINFPLYMVYLSNFRRRFLRIF 315          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A183SMG7 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS5415 PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.756e-21
Identity = 90/301 (29.90%), Postives = 152/301 (50.50%), Query Frame = 3
Query:  291 RFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKL---------YDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTGSGKETDTICES 1166
            RF ++  +LA+  S++LI N+ +DDF GRGL F +  +  +K+D +    CKLME+ P  MYFA++Y+MV  ++DR   I++  QF +   + K A   C+LV  +G +   P L    I  L + ++  +N +C +         +  VFS ++ +F  +L+     I+++          R  +I R R      IK    S   +  G+LA+S+ FLL+ +PL   ++VR   T       S   + + + S+F SS+KDL YA+N  +   FL+ FR  +  L +    +    C +
Sbjct:   60 RFSIFAISLAIAHSMSLILNTVMDDFLGRGLQFATGNQFTLKLDSTSTLACKLMEYFPNAMYFAASYLMVTFSLDRALTINRPLQFNSFFYR-KYATLTCILVFVVGFLGNLPFLL---IQKLQFNSAIPTNYTCVMNQDYPKMAKFAIVFSTLVTFFLPVLIIFALNIVIV---------TRLWQIHRWR-RGQLKIKTRIVSELGRATGHLAMSTAFLLLYVPLGFVVLVRLHFTEVHGDDTSAAALRIIDLSRFFSSLKDLAYAVNVLIYAVFLKNFRTRLLRLLSCQRNDNSLNCHA 346          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A0R3U5C5 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS1918 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.874e-21
Identity = 86/281 (30.60%), Postives = 147/281 (52.31%), Query Frame = 3
Query:  291 RFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTG 1133
            RF V+  +LA+  +V+LI N+ +DDFFGRGL + + GR  +K D +    CKL+EF+PR+MYF ++Y++VV ++DR   +    ++ A  R  ++A   C++V+FIG I  +P L    +     E       +C++   V +E +L    ++   L    + +   F +N V   R+ R      ++          ++ G+LA+++ FLL+ +PL   ++VR   T       +     +   SKF SS+KD+ YA+N ++  AFL  FR  +  L  G
Sbjct:   58 RFSVFAISLAIAHTVSLIVNTIIDDFFGRGLAYATDGRFFLKFDATSEAACKLLEFLPRMMYFVASYLVVVFSIDRTLAVYNPIKYHA-CRYQRQAIIACLVVVFIGAIGNTPTLVVQTL-----ERQEGGCTACRM---VHNETILKDFFIVSTTLVTFFIPVIAVFALNVVIVLRLWRAHQWRQTAGVSGGAQEVGRITGHLAMTTCFLLLYIPLGFVVLVRLHYTLHHSEDYTPRATQVINLSKFFSSLKDIAYAVNCFIYAAFLGNFRARLVRLCKG 329          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000040061.1 (SMESG000040061.1)

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 3
Query:  165 MNHQNIEYANDIYRAIIIPFXXXXXXXXXXXXXXXXSRQFVGRFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTGSGKETDTICESKHQLTQTDI 1193
            MNHQNIEYANDIYRAIIIPFVVLFGVFGNVVIIVVLSRQFVGRFEVYCFTLAVVQSVALIFNSFLDDFFGRGLDFLSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSLLVFVLPIIIVIICNFFIVNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTGSGKETDTICESKHQLTQTDI
Sbjct:    1 MNHQNIEYANDIYRAIIIPFVVLFGVFGNVVIIVVLSRQFVGRFEVYCFTLAVVQSVALIFNSFLDDFFGRGLDFLSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSLLVFVLPIIIVIICNFFIVNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTGSGKETDTICESKHQLTQTDI 343          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000040060.1 (SMESG000040060.1)

HSP 1 Score: 462.225 bits (1188), Expect = 3.807e-163
Identity = 280/341 (82.11%), Postives = 311/341 (91.20%), Query Frame = 3
Query:  165 MNHQNIEYANDIYRAIIIPFXXXXXXXXXXXXXXXXSRQFVGRFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFTGSGKETDTICESKHQLTQT 1187
            M HQ IE ANDIYRAIIIPFVVLFGVFGNVVIIVVLSRQFVGRFEVYCFTLAVVQSVALIFNSFLDDF GRGLDFLSSGRINIKIDQSVNFMCKL+EFIPRVMYFASAYVMVVMAVDRYFVI+KG+QFPAP+  V RAKFIC+ ++ IG IL SPLLWYYNINN++YEN HF+N SCKL ++VFSEIL+YFQSL+VFVLPI IVIICN FIVNK+ +RR LRKRLSS+SSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVR++ TGPFKA+KSDVGVTLSEASKFTSSIKD+HYAINFYLN+ FLE+FRKDVK LF+ + ++ +    +K  LT++
Sbjct:    5 MAHQTIENANDIYRAIIIPFVVLFGVFGNVVIIVVLSRQFVGRFEVYCFTLAVVQSVALIFNSFLDDFLGRGLDFLSSGRINIKIDQSVNFMCKLLEFIPRVMYFASAYVMVVMAVDRYFVINKGAQFPAPNLHVFRAKFICIFIVTIGAILSSPLLWYYNINNITYENRHFANTSCKLTETVFSEILMYFQSLIVFVLPIFIVIICNIFIVNKLLKRRTLRKRLSSSSSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRNVKTGPFKATKSDVGVTLSEASKFTSSIKDMHYAINFYLNITFLERFRKDVKKLFSFNRRQIENENSTKRHLTKS 345          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000040059.1 (SMESG000040059.1)

HSP 1 Score: 254.603 bits (649), Expect = 4.955e-82
Identity = 175/317 (55.21%), Postives = 226/317 (71.29%), Query Frame = 3
Query:  180 IEYANDIYRAIIIPFXXXXXXXXXXXXXXXXSRQFVGRFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFT 1130
            +EY NDIYR       V  GVFGN+VIIV   R  +GRFE+YCFTLAVVQS ALIFNSF DDF G+GL FL+S R+++K+DQS N +CKL EFIP +MYF+SAY++VVMAVDRY VISKG ++P P   + RAK +C +++ IG +   PLLW YNIN  S+ N +F+NKSCK+  ++ +E +L  QSL++FVLPI +VII N  IV K+ +R   RKR++S S  K + NS  +KLIGYLAISS FL ISMP+AI   +  +    F+   +    +L E  KFTSSIKD+HY +NFY+N+ FL+QFR DVK LF 
Sbjct:    7 LEYINDIYRGSFELLFVFLGVFGNIVIIVNFFRNTIGRFEIYCFTLAVVQSFALIFNSFFDDFLGQGLSFLTSKRLHLKLDQSSNVICKLFEFIPNIMYFSSAYIIVVMAVDRYHVISKGVKYPLPHLHLSRAKILCTIIITIGGVFNIPLLWSYNINYESHGNINFNNKSCKVNHTLVTEWILNGQSLVIFVLPIFVVIIYNILIVRKLIKRHKRRKRITSLS--KANSNSELLKLIGYLAISSVFLFISMPMAITTSLMCLSKKYFELYYN----SLLEFYKFTSSIKDIHYGLNFYINLIFLKQFRNDVKRLFN 317          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000072348.1 (SMESG000072348.1)

HSP 1 Score: 132.109 bits (331), Expect = 6.699e-35
Identity = 118/320 (36.88%), Postives = 188/320 (58.75%), Query Frame = 3
Query:  180 IEYANDIYRAIIIPFXXXXXXXXXXXXXXXXSRQFVGRFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLS----EASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLF 1127
            IEY  D+YR    P + + G+ GN+ II   +  F  +F +YC  LA+  S AL+ N+FLDDF GRGL FL+  + +IKI++     C  ME++P VMYFAS+YVMV  ++DR  V++   ++ +P R  +   FIC+ V  +G I+  PLL+ Y   +L   N++ +  SC++ +S      LY +SL++FV+P + V   N  I   + Q +  R+ LSS  +  +  +S   +++ +LA+S+ FLL+++PL+I II+R II    K S  +   +        +K  SSIKDL YA+NF+L + F+  F+ +  S+F
Sbjct:   10 IEYVTDVYRGYFCPVISILGILGNIFIIFTFAYNFNNKFVIYCCALALYNSFALLTNTFLDDFLGRGLGFLTKNKFSIKIEELCQGSCLFMEYVPNVMYFASSYVMVAFSLDRMLVLALPIKY-SPYRGYRYTIFICLAVGVMGAIVAGPLLFSY---SLEKTNANSTEMSCQMINSKMVTFGLYLKSLVIFVIPTVFVASFNIVIYCLLLQTKKRRQNLSSRKT-NRGSSSEMGRIVAHLALSTVFLLLTIPLSITIILRLIIK---KNSLYNYSYSYKNNVIHLTKLLSSIKDLSYAVNFFLYLIFIPSFKYEFFSIF 321          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000006006.1 (SMESG000006006.1)

HSP 1 Score: 122.865 bits (307), Expect = 1.636e-31
Identity = 118/315 (37.46%), Postives = 186/315 (59.05%), Query Frame = 3
Query:  195 DIYRAIIIPFXXXXXXXXXXXXXXXXSRQFVGRFEVYCFTLAVVQSVALIFNSXXXXXXXXXXXXXSSGRINIKIDQSVNFMCKLMEFIPRVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGMILCSPLLWYYNINNLSYENSHFSNKSCKLY--DSVFSEILLYFQSXXXXXXXXXXXXXXXXXXXNKVRQRRILRKRLSSASSIKKDPNSGSM-KLIGYLAISSGFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYAINFYLNVAFLEQFRKDVKSLFT 1130
            +IYRA +IPF+ +FG+ GNV++I+V  R+ + RF VY   L +  S+AL  NSFLDDF GRGL + +SG+  +K D      C  ME+ P VMYF+S +VMV+   DR+FV+    +F   +  V+++   CV V F+G I   PL   + +   S +      K C++   DS  + + LY++S++V+V+P +++ I N FI+ ++    I   ++ S   + K  N   M +++G LA+SS FLL ++PL++ II+R  I  P        G  L   SK  SS+KD++Y+INF++   FL  F+ D+K LF+
Sbjct:    8 NIYRAYLIPFIAIFGIVGNVLVILVFLRKRISRFNVYSIALLIANSLALFINSFLDDFLGRGLYYATSGKSYVKFDTISKSSCIAMEYFPNVMYFSSGFVMVIFTFDRFFVLMWPFKFKG-TGGVRKSIIACVAVYFLGFITGIPLGISHQLKA-SNDKWGIEGKICQISSNDSHLATLSLYYESVIVYVIPTVLIFIVNTFIIYEI----IKMTKIRSTIILDKQANHLEMCRIVGMLAVSSTFLLFTIPLSVVIIIRLQIDHP-------NGKNLRALSKLFSSLKDINYSINFFIYFIFLSYFKYDLKMLFS 309          
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A504YBU04.584e-2430.10Type-1 angiotensin II receptor A OS=Fasciola gigan... [more]
A0A193KUG52.283e-2236.33GCR157 OS=Schmidtea mediterranea OX=79327 GN=gcr15... [more]
A0A2H1CI127.014e-2231.077 transmembrane receptor OS=Fasciola hepatica OX=6... [more]
A0A183SMG71.756e-2129.90G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A0R3U5C55.874e-2130.60Uncharacterized protein OS=Mesocestoides corti OX=... [more]
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000040061.10.000e+0100.00SMESG000040061.1[more]
SMESG000040060.13.807e-16382.11SMESG000040060.1[more]
SMESG000040059.14.955e-8255.21SMESG000040059.1[more]
SMESG000072348.16.699e-3536.88SMESG000072348.1[more]
SMESG000006006.11.636e-3137.46SMESG000006006.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009680 ID=SMED30009680|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1207bp
TTTCACTGCAAAATCTTTTATTCATTAAATTCTGTAAAGAACATTTGAAA
TGGAGTAAATTTATTGGTTGAAATGAGATCCAATAGAAAACCGAGCACAA
CACAAATTAAATTTTTATAGGTATCATTATTGTTATTAATTTTTAATTTA
CCTAATTGGGAATTATGAACCATCAAAATATCGAATATGCCAATGACATT
TATCGGGCCATCATCATTCCCTTTGTTGTTTTATTTGGAGTTTTTGGAAA
TGTCGTTATTATTGTTGTTTTATCGCGTCAATTTGTCGGTAGATTTGAAG
TGTATTGTTTTACTCTCGCCGTTGTTCAAAGTGTTGCTTTGATCTTCAAT
AGTTTTCTTGATGACTTCTTTGGCAGGGGTTTGGACTTTCTCAGCAGTGG
ACGTATCAATATCAAAATCGATCAATCGGTAAATTTTATGTGCAAATTGA
TGGAATTCATTCCGAGAGTCATGTACTTTGCTAGTGCATATGTCATGGTC
GTGATGGCTGTTGACAGATATTTTGTCATTAGCAAGGGATCGCAATTTCC
GGCACCAAGTCGCCAGGTGAAACGGGCGAAATTTATCTGTGTTTTGGTTT
TGTTTATTGGTATGATTCTTTGCAGCCCCCTCTTGTGGTATTACAATATC
AACAATCTCTCTTATGAAAATAGCCACTTCTCCAACAAAAGCTGTAAATT
ATATGATTCTGTGTTTTCGGAAATTTTATTATATTTCCAATCTTTATTAG
TTTTTGTTTTACCTATAATTATTGTTATTATCTGCAATTTTTTTATTGTT
AATAAAGTGAGACAGAGAAGAATCCTTAGAAAACGTCTCAGTTCAGCGTC
GAGTATTAAAAAAGATCCGAATTCGGGCTCAATGAAGTTGATTGGATATT
TGGCGATTAGTTCGGGATTTCTCCTGATTTCCATGCCGTTGGCAATTAAT
ATCATTGTGAGAAGTATCATAACTGGCCCGTTCAAAGCCTCTAAATCTGA
TGTTGGCGTTACGTTGTCGGAAGCGAGCAAATTTACGTCATCAATTAAAG
ACCTGCATTATGCGATAAATTTCTATCTCAATGTGGCATTCCTTGAACAA
TTTCGTAAAGATGTTAAAAGTTTATTTACGGGCAGTGGCAAGGAGACTGA
TACCATTTGCGAGAGTAAGCATCAATTAACACAAACTGACATATAATTCA
AATATGA
back to top

protein sequence of SMED30009680-orf-1

>SMED30009680-orf-1 ID=SMED30009680-orf-1|Name=SMED30009680-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=344bp
MNHQNIEYANDIYRAIIIPFVVLFGVFGNVVIIVVLSRQFVGRFEVYCFT
LAVVQSVALIFNSFLDDFFGRGLDFLSSGRINIKIDQSVNFMCKLMEFIP
RVMYFASAYVMVVMAVDRYFVISKGSQFPAPSRQVKRAKFICVLVLFIGM
ILCSPLLWYYNINNLSYENSHFSNKSCKLYDSVFSEILLYFQSLLVFVLP
IIIVIICNFFIVNKVRQRRILRKRLSSASSIKKDPNSGSMKLIGYLAISS
GFLLISMPLAINIIVRSIITGPFKASKSDVGVTLSEASKFTSSIKDLHYA
INFYLNVAFLEQFRKDVKSLFTGSGKETDTICESKHQLTQTDI*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000418head
PLANA:0002028dorsal-ventral muscle cell
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: biological process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: molecular function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 100..122
score: 27.45
coord: 13..37
score: 21.76
coord: 189..212
score: 20.1
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 90..268
e-value: 3.7E-19
score: 69.1
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 106..122
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 2..329
e-value: 6.6E-39
score: 135.7
NoneNo IPR availablePANTHERPTHR24229:SF40GH14208Pcoord: 10..324
NoneNo IPR availablePANTHERPTHR24229NEUROPEPTIDES RECEPTORcoord: 10..324
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 12..317
e-value: 8.49902E-18
score: 80.3696
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 12..324
NoneNo IPR availableTMHMMTMhelixcoord: 242..264
NoneNo IPR availableTMHMMTMhelixcoord: 190..212
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 140..162
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 28..306
score: 19.348