RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009636 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Homology
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Human
Match: SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:HGNC Symbol;Acc:HGNC:25016]) HSP 1 Score: 257.299 bits (656), Expect = 4.832e-87 Identity = 115/193 (59.59%), Postives = 159/193 (82.38%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ +LFD+I+T EERVYD V+E L +R+ + +PVH++N+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Human
Match: SSU72P2 (SSU72 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:43621]) HSP 1 Score: 203.371 bits (516), Expect = 7.945e-66 Identity = 98/194 (50.52%), Postives = 141/194 (72.68%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 +SS +++AVVC SN NRSMEAH L KKG V+SFG S V+LPGP + P ++ F TTY M+++L ++D+ YT+NG+L++L RN RIK PERFQ+ T+ FDVI T EE VYD V+E L +R+ + +PVH+IN++IQD E+ATLGAFLIC++ + QSDD++++++E++ E + + LHTV FY Sbjct: 2 LSSTLRVAVVCVSNVNRSMEAHSILRKKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYNDLLRKDRECYTRNGILHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVVEDLCSREQQT-FQPVHVINMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Human
Match: SSU72P3 (SSU72 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:43622]) HSP 1 Score: 203.371 bits (516), Expect = 9.356e-66 Identity = 99/194 (51.03%), Postives = 141/194 (72.68%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 +SS +++AVVC SN NRSMEAH L +KG V+SFG S V+LPGP + P ++ F TTY M+++L ++D+ YT+NG+L++L RN RIK PERFQ+ T+ FDVI T EE VYD V+E L +R+ + +PVH+IN+DIQD E+ATLGAFLIC++ + QSDDI+++++E++ E + + LHTV FY Sbjct: 2 LSSPLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKQMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDSFDVIFTCEESVYDTVVEDLCSREQQT-FQPVHVINMDIQDTLEDATLGAFLICEICQCLQQSDDIEDNLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Human
Match: SSU72P4 (SSU72 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:43623]) HSP 1 Score: 202.986 bits (515), Expect = 1.078e-65 Identity = 98/194 (50.52%), Postives = 141/194 (72.68%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 +SS +++AVVC SN NRSMEAH L +KG V+SFG S V+LPGP + P ++ F TTY M+++L ++D+ YT+NG+L++L RN RIK PERFQ+ T+ FDVI T EE VYD V+E L +R+ + +PVH+IN+DIQD E+ATLGAFLIC++ + QSDD++++++E++ E + + LHTV FY Sbjct: 2 LSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVVEDLCSREQQT-FQPVHVINMDIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Human
Match: SSU72P7 (SSU72 pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:43626]) HSP 1 Score: 201.445 bits (511), Expect = 4.697e-65 Identity = 97/194 (50.00%), Postives = 141/194 (72.68%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 +SS +++AVVC SN NRSMEAH L +KG V+SFG S V+LPGP + P ++ F TTY M+++L ++D+ YT+NG+L++L RN RIK PERFQ+ T+ FDVI T EE VYD V+E L +R+ + +PVH+IN++IQD E+ATLGAFLIC++ + QSDD++++++E++ E + + LHTV FY Sbjct: 2 LSSTLRVAVVCVSNVNRSMEAHSILRRKGLSVRSFGTESHVRLPGPRPNRPVVYDFATTYKEMYNDLLRKDRERYTRNGILHILGRNERIKPGPERFQECTDFFDVIFTCEESVYDTVVEDLCSREQQT-FQPVHVINMEIQDTLEDATLGAFLICEICQCLQQSDDMEDNLEELLLQMEEKAGKSFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Celegans
Match: ssup-72 (SSU (Yeast Suppressor of SUa7) Protein homolog [Source:UniProtKB/TrEMBL;Acc:Q22453]) HSP 1 Score: 206.453 bits (524), Expect = 2.691e-67 Identity = 99/197 (50.25%), Postives = 145/197 (73.60%), Query Frame = 2 Query: 53 DMSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSF-ETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHS-NRHLLHTVSFY 637 + SS ++ AV CSSN NRSMEAH L K+G+ ++S+G G+QVK+PGP+ +PN + F TTY+ ++ +L+ +D LYTQNG+L+M++RNRRIKS+P+RFQ T FD+++ +EERV+D V++ L K G+ PVH+INIDI+DN EEAT GAF + DL + +S+D + DID++I E++ R+LLHT+ FY Sbjct: 2 EYSSKLRFAVSCSSNMNRSMEAHGILKKRGFNIESYGSGNQVKMPGPTVDKPNCYEFGPTTYEDIYADLTNKDLHLYTQNGLLHMVDRNRRIKSRPQRFQAETREFDIVLCLEERVFDQVVDFLNRSVGKSGN-PVHVINIDIEDNAEEATFGAFFVADLCEKLERSEDFEEDIDQIITDLEENNPKRNLLHTICFY 197
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Fly
Match: Ssu72 (gene:FBgn0031054 transcript:FBtr0074747) HSP 1 Score: 233.032 bits (593), Expect = 9.190e-78 Identity = 109/195 (55.90%), Postives = 150/195 (76.92%), Query Frame = 2 Query: 62 SDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVV---LECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 S + +AVVCSSN NRSMEAH+FL KKG+ V+S+G G +VKLPG + +PN++ F T Y+ ++ +L +DK YTQNG+L+ML+RNRRIK PERFQD+ E FD+IVTVEERVYD+V +E +E+ DN RPVH++N+D+ DN E+A +GAF+I D+++M+ +S D+DNDIDE+IQ F E R +LH+V FY Sbjct: 5 SKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESMESVDN----RPVHVLNVDVVDNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 195
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Fly
Match: Ssu72 (gene:FBgn0031054 transcript:FBtr0344152) HSP 1 Score: 233.032 bits (593), Expect = 9.190e-78 Identity = 109/195 (55.90%), Postives = 150/195 (76.92%), Query Frame = 2 Query: 62 SDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVV---LECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 S + +AVVCSSN NRSMEAH+FL KKG+ V+S+G G +VKLPG + +PN++ F T Y+ ++ +L +DK YTQNG+L+ML+RNRRIK PERFQD+ E FD+IVTVEERVYD+V +E +E+ DN RPVH++N+D+ DN E+A +GAF+I D+++M+ +S D+DNDIDE+IQ F E R +LH+V FY Sbjct: 5 SKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESMESVDN----RPVHVLNVDVVDNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 195
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Fly
Match: Ssu72 (gene:FBgn0031054 transcript:FBtr0332889) HSP 1 Score: 228.024 bits (580), Expect = 9.225e-76 Identity = 109/195 (55.90%), Postives = 150/195 (76.92%), Query Frame = 2 Query: 62 SDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVV---LECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 S + +AVVCSSN NRSMEAH+FL KKG+ V+S+G G +VKLPG + +PN++ F T Y+ ++ +L +DK YTQNG+L+ML+RNRRIK PERFQD+ E FD+IVTVEERVYD+V +E +E+ DN RPVH++N+D+ DN E+A +GAF+I D+++M+ +S D+DNDIDE+IQ F E R +LH+V FY Sbjct: 5 SKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAFDKPNVYEFGTKYEDIYRDLESKDKD-YTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMESMESVDN----RPVHVLNVDVVDNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Zebrafish
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:393701]) HSP 1 Score: 251.521 bits (641), Expect = 5.303e-85 Identity = 113/190 (59.47%), Postives = 157/190 (82.63%), Query Frame = 2 Query: 68 IKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PNI+ F+TTY+ M+++L ++DK LYTQNG+L+ML+RN+RIKS+PERFQ + FD+++T EERVYD VLE L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I +DD++N++DE++Q F E S+R LH+V FY Sbjct: 6 LRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYNDLVRKDKELYTQNGILHMLDRNKRIKSRPERFQSCRDQFDLVITCEERVYDQVLEDLNSREQE-SFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Xenopus
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:549018]) HSP 1 Score: 248.825 bits (634), Expect = 1.101e-83 Identity = 110/193 (56.99%), Postives = 157/193 (81.35%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 ++ +++AVVCSSNQNRSMEAH+ L+K+ + V+SFG G+ VKLPGP+ +PN++ F+TTY+ M+++L K+DK LYTQNG+L+ML+RNRRIK +PERFQ+ + FD+++T EERVYD V+E L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F + S R LHT+ FY Sbjct: 3 TAPLRVAVVCSSNQNRSMEAHNILSKRSFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYNDLLKKDKELYTQNGILHMLDRNRRIKPRPERFQNCKDNFDLVITCEERVYDQVVEELNSREQETC-QPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSGRTFLHTICFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Xenopus
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:549018]) HSP 1 Score: 216.083 bits (549), Expect = 4.481e-71 Identity = 102/193 (52.85%), Postives = 145/193 (75.13%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 ++ +++AVVCSSNQNRSME + G + VKLPGP+ +PN++ F+TTY+ M+++L K+DK LYTQNG+L+ML+RNRRIK +PERFQ+ + FD+++T EERVYD V+E L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F + S R LHT+ FY Sbjct: 3 TAPLRVAVVCSSNQNRSME------RCG--------RTHVKLPGPAPDKPNVYDFKTTYEQMYNDLLKKDKELYTQNGILHMLDRNRRIKPRPERFQNCKDNFDLVITCEERVYDQVVEELNSREQETC-QPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEDKSGRTFLHTICFY 180
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Mouse
Match: Ssu72 (Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) [Source:MGI Symbol;Acc:MGI:1916241]) HSP 1 Score: 259.61 bits (662), Expect = 4.019e-88 Identity = 116/193 (60.10%), Postives = 160/193 (82.90%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ T+LFD+I+T EERVYD V+E L +R+ + +PVH++N+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCTDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Mouse
Match: Ssu72 (Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) [Source:MGI Symbol;Acc:MGI:1916241]) HSP 1 Score: 224.557 bits (571), Expect = 1.957e-74 Identity = 99/161 (61.49%), Postives = 137/161 (85.09%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMI 541 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ T+LFD+I+T EERVYD V+E L +R+ + +PVH++N+DIQDNHEEATLGAFLIC+L + Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCTDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVVNVDIQDNHEEATLGAFLICELCQCV 162
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. UniProt/SwissProt
Match: sp|Q9CY97|SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus OX=10090 GN=Ssu72 PE=1 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 2.811e-87 Identity = 116/193 (60.10%), Postives = 160/193 (82.90%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ T+LFD+I+T EERVYD V+E L +R+ + +PVH++N+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCTDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. UniProt/SwissProt
Match: sp|Q17QI2|SSU72_BOVIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 1.565e-86 Identity = 116/193 (60.10%), Postives = 159/193 (82.38%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ +LFD+I+T EERVYD V+E L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. UniProt/SwissProt
Match: sp|Q4KLK9|SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus OX=10116 GN=Ssu72 PE=2 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 2.246e-86 Identity = 115/193 (59.59%), Postives = 159/193 (82.38%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ +LFD+I+T EERVYD V+E L +R+ + +PVH++N+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. UniProt/SwissProt
Match: sp|Q9NP77|SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens OX=9606 GN=SSU72 PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 2.321e-86 Identity = 115/193 (59.59%), Postives = 159/193 (82.38%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ +LFD+I+T EERVYD V+E L +R+ + +PVH++N+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. UniProt/SwissProt
Match: sp|Q5ZJQ7|SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus OX=9031 GN=SSU72 PE=2 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 5.044e-86 Identity = 115/193 (59.59%), Postives = 159/193 (82.38%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 SS +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RN+RIK +PERFQ+ ++FD+I+T EERVYD V+E L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E S R LHTV FY Sbjct: 3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDVFDLILTCEERVYDQVVEDLNSREQETC-QPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. TrEMBL
Match: V3ZTQ1 (Uncharacterized protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_236282 PE=4 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 9.506e-92 Identity = 127/194 (65.46%), Postives = 163/194 (84.02%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 M S++K+AVVCSSNQNRSMEAH+FL+KKGY V+SFG G+QVKLPGPS +PN + F TYD MF +LS++D LYTQNG+L+ML+RNRR+K KPERFQ+ ++ FD+I+T EERVYD V+E LENR+ K G + VHIINIDIQDNHEEAT+GAF+IC+LV+M+ SDD+DND+DE++Q F + R +LHTV+FY Sbjct: 1 MPSEVKVAVVCSSNQNRSMEAHNFLSKKGYSVRSFGTGNQVKLPGPSPDKPNNYDFNVTYDEMFKDLSQKDPELYTQNGILHMLDRNRRLKPKPERFQNCSDKFDIIMTCEERVYDQVIEDLENRE-KDGGQAVHIINIDIQDNHEEATIGAFMICELVAMLAISDDLDNDVDEIVQEFESQTKRTILHTVAFY 193
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. TrEMBL
Match: C3YRI6 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_121072 PE=4 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 2.296e-87 Identity = 126/196 (64.29%), Postives = 157/196 (80.10%), Query Frame = 2 Query: 62 SDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKAL----YTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 D+ IAVVCSSNQNRSMEAH FL+KKG+ VKSFG GSQVKLPGP+ +PN++ F TTYD M +L+++D AL YTQNG+L+ML+RN+RIK +PERFQ + E FD++VT EERVYD V+E LE RD+ PVH+INIDIQDNHEEAT+GAFLICDL M+ SDD++N++DE++Q F E NR +LHTVSFY Sbjct: 2 GDLNIAVVCSSNQNRSMEAHAFLSKKGFRVKSFGTGSQVKLPGPAPDKPNVYDFGTTYDQMHKDLTQKDLALLKPRYTQNGILHMLDRNKRIKPRPERFQSAKERFDIVVTCEERVYDQVVEDLETRDSG-ADAPVHVINIDIQDNHEEATIGAFLICDLCQMLQDSDDLENEMDEILQAFEEKCNRPILHTVSFY 196
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. TrEMBL
Match: A0A4Y2GVC3 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Araneus ventricosus OX=182803 GN=SSU72 PE=4 SV=1) HSP 1 Score: 265.774 bits (678), Expect = 2.818e-87 Identity = 121/194 (62.37%), Postives = 158/194 (81.44%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 M+SD+++AVVCSSNQNRSMEAH FL+KKG+ V+SFG G+QVKLPGP+ +PN++ F +Y+ M+ +L +DKALYTQNG+L+ML+RNRRIKS PERFQ E FDVI TVEERVYD V+E L +R K P+HIINID+QDNHEEAT+GAFL+C++ +M+ +S+D+DNDIDE++Q F + R +LHTV FY Sbjct: 1 MTSDLRVAVVCSSNQNRSMEAHAFLSKKGFKVRSFGSGNQVKLPGPAPDKPNVYDFSISYEQMYQDLLAKDKALYTQNGLLHMLDRNRRIKSHPERFQSCYETFDVIFTVEERVYDQVVEELASRSPK-EISPIHIINIDVQDNHEEATIGAFLVCEMATMMAESEDLDNDIDELLQEFEAKAQRPILHTVQFY 193
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. TrEMBL
Match: A0A0B7API3 (Uncharacterized protein OS=Arion vulgaris OX=1028688 GN=ORF133465 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 5.770e-86 Identity = 122/194 (62.89%), Postives = 157/194 (80.93%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 M++++KIAV+CSSNQNRSMEAH FL+KKG+ VKSFG G+ VKLPGP+ +PNI+ F TYD M+ +L ++D LYTQNG+L+ML+RNRRIK+ PERFQ S E FD+++T EERVYD VLE ENRD + VHIINIDIQDNHEEAT+GAF+IC+LV+M+ SDD+DN++DE++Q F +R +LHTV FY Sbjct: 1 MANELKIAVICSSNQNRSMEAHSFLSKKGFNVKSFGTGNMVKLPGPAPDKPNIYDFSITYDAMYRDLMQKDYELYTQNGILHMLDRNRRIKANPERFQLSKEKFDLVITCEERVYDQVLEDFENRDRN-DEQAVHIINIDIQDNHEEATIGAFMICELVTMLYASDDLDNEVDEILQEFEHKVSRTVLHTVQFY 193
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. TrEMBL
Match: A0A5F8G229 (Uncharacterized protein OS=Monodelphis domestica OX=13616 PE=4 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 1.019e-85 Identity = 118/194 (60.82%), Postives = 160/194 (82.47%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 M S +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTYD M+++L ++DK LYTQNG+L+ML+RNRRIK +PERFQ+ +LFD+I+T EERVYD V+E L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I ++D++N+IDE++Q F E SNR LHTV FY Sbjct: 1 MQSSLRVAVVCSSNQNRSMEAHNILSKRGFNVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNRRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETC-QPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSNRTFLHTVCFY 193
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Cavefish
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:103043050]) HSP 1 Score: 253.062 bits (645), Expect = 1.085e-85 Identity = 114/193 (59.07%), Postives = 156/193 (80.83%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 S +++AVVCSSNQNRSMEAH+ L+K+G+ V+SFG G+ VKLPGP+ +PN++ F+TTY+ M+ +L ++DK LYTQNG+L+MLERN+RIK +PERFQ + FD+++T EERVYD VLE L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I +DD++N+IDE++Q F + S+R LHTV FY Sbjct: 3 SQPLRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYSDLVRKDKDLYTQNGILHMLERNKRIKQRPERFQSCKDQFDLVITCEERVYDQVLEDLNSREQET-FQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEIDELLQEFEDKSSRPFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Sea Lamprey
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:393701]) HSP 1 Score: 246.128 bits (627), Expect = 1.393e-83 Identity = 115/192 (59.90%), Postives = 151/192 (78.65%), Query Frame = 2 Query: 62 SDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 S +KIAVVCSSNQNRSMEAH L+KKG+ V+SFG G+ VKLPGP+ +PN++ F+TTY+ M+ +L +DK LYTQNG+L+MLERNRR+K +PERFQ E FD+++T EERVYD VLE L +R+ + +PVH+IN+DIQDNHE+ATLGAFL+ + I +DD+DNDIDE++Q F + + LLHTV FY Sbjct: 4 SSMKIAVVCSSNQNRSMEAHSVLSKKGFYVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYSDLVMKDKELYTQNGILHMLERNRRLKPRPERFQSCREHFDIVLTCEERVYDQVLEDLNSREQET-LQPVHVINVDIQDNHEDATLGAFLLLEKNQKIKLTDDVDNDIDELLQDFEDKCGKPLLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Sea Lamprey
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:393701]) HSP 1 Score: 210.69 bits (535), Expect = 6.812e-70 Identity = 99/170 (58.24%), Postives = 133/170 (78.24%), Query Frame = 2 Query: 131 NKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLEC-LENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 +KKG+ V+SFG G+ VKLPGPS +PNI+ F+T YD M+ +L +RDK LYTQNG+L+ML+RNRRIK PERFQ+ + FD+I+T EERVYD V+E L R+ + +PVH+IN+D+QDNHE+ATLGAFLIC+L I ++D+DN+IDE++Q F E S + +LHTV FY Sbjct: 1 SKKGFDVRSFGTGTHVKLPGPSPDKPNIYEFKTPYDAMYQDLLQRDKDLYTQNGILHMLDRNRRIKPCPERFQECPDRFDLILTCEERVYDQVVEADLSGREQE-SFQPVHVINVDVQDNHEDATLGAFLICELCQCIQLTEDLDNEIDELVQDFEEKSGKLILHTVCFY 169
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Yeast
Match: SSU72 (Phosphatase and transcription/RNA-processing factor; associates with TFIIB and cleavage/polyadenylation factor Pta1p; exhibits phosphatase activity on serine-5 and serine-7 of the RNA polymerase II C-terminal domain; affects start site selection and transcriptional read through in vivo [Source:SGD;Acc:S000005166]) HSP 1 Score: 165.236 bits (417), Expect = 7.872e-52 Identity = 85/202 (42.08%), Postives = 129/202 (63.86%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMI------VQSDDI---DNDIDEVIQHFSEHSNRHLLHTVSFY 637 +S++K VC+SN NRSME+H L + GY V S+G GS V+LPG S +PN++SF T Y+ ++++L + Y NG+L ML+RNRR+K PE++Q+ST++FD + T EER +D V E L NR K+ ++ VH+IN+DI+D+ E A +G+ I +L M+ + DDI D +D + + S HS L+ S+Y Sbjct: 6 NSNLKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYNDLLSQSADRYKSNGLLQMLDRNRRLKKAPEKWQESTKVFDFVFTCEERCFDAVCEDLMNRGGKL-NKIVHVINVDIKDDDENAKIGSKAILELADMLNDKIEQCEKDDIPFEDCIMDILTEWQSSHSQLPSLYAPSYY 206
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Nematostella
Match: EDO39582 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S9J1]) HSP 1 Score: 246.128 bits (627), Expect = 2.705e-83 Identity = 112/194 (57.73%), Postives = 157/194 (80.93%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 M +KIAVVCSSNQNRSMEAH+FL+K+G+ VKS+G G+ VKLPGP+ +PNI++F+T YD M+ +L ++D ALYTQNG+L+ML+RNRRIK+ PERFQ++ E FD+I+T EERVYD V+E LE D + ++PVH++NIDI DNHEEATLGAFLIC++ I + D++++I++V+ F + R++LH+V+FY Sbjct: 1 MVHKLKIAVVCSSNQNRSMEAHNFLSKRGFNVKSYGSGTHVKLPGPAPDKPNIYTFDTPYDEMYKDLLRKDSALYTQNGILHMLDRNRRIKALPERFQEAVEHFDLIITAEERVYDQVIEHLEGLDAQ-SYKPVHVVNIDILDNHEEATLGAFLICEICEAIEKLTDVEDEINDVVAKFEDKYKRNILHSVAFY 193
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Medaka
Match: ssu72 (SSU72 homolog, RNA polymerase II CTD phosphatase [Source:NCBI gene;Acc:101170572]) HSP 1 Score: 257.684 bits (657), Expect = 2.173e-87 Identity = 118/193 (61.14%), Postives = 157/193 (81.35%), Query Frame = 2 Query: 59 SSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 S +++AVVCSSNQNRSMEAH L+K+G+ V+SFG GS VKLPGP+ +PN++ F+TTY+ M+++L ++DK LYTQNG+L+ML+RN+RIKSKPERFQ E FD+++T EERVYD VLE L +R+ + +PVH+IN+DIQDNHEEATLGAFLIC+L I +DD++N+IDE++Q F + SNR LHTV FY Sbjct: 3 SHPLRVAVVCSSNQNRSMEAHSILSKRGFEVRSFGTGSHVKLPGPAPDKPNVYDFKTTYEQMYNDLVRKDKELYTQNGILHMLDRNKRIKSKPERFQLCKEKFDLVITCEERVYDQVLEDLNSREQET-MQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEIDELLQEFEDKSNRPFLHTVCFY 194
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Planmine SMEST
Match: SMESG000002994.1 (SMESG000002994.1) HSP 1 Score: 400.208 bits (1027), Expect = 6.167e-144 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 2 Query: 56 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 637 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY Sbjct: 1 MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEPNIFSFETTYDHMFDELSKRDKALYTQNGVLNMLERNRRIKSKPERFQDSTELFDVIVTVEERVYDVVLECLENRDNKIGHRPVHIINIDIQDNHEEATLGAFLICDLVSMIVQSDDIDNDIDEVIQHFSEHSNRHLLHTVSFY 194 The following BLAST results are available for this feature:
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 2
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of RNA polymerase II subunit A C-terminal domain phosphatase SSU72 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009636 ID=SMED30009636|Name=RNA polymerase II subunit A C-terminal domain phosphatase SSU72|organism=Schmidtea mediterranea sexual|type=transcript|length=699bpback to top protein sequence of SMED30009636-orf-1 >SMED30009636-orf-1 ID=SMED30009636-orf-1|Name=SMED30009636-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=195bp MSSDIKIAVVCSSNQNRSMEAHHFLNKKGYLVKSFGIGSQVKLPGPSQSEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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