SMED30009602

Overview
NameSMED30009602
Smed IDSMED30009602
Length (bp)934
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009602 (SMED30009602) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009602 (SMED30009602) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009602 (SMED30009602) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009602 (SMED30009602) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30009602

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30009602SMESG000065696.1 SmedASXL_004439SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X1 cellSMED30009602SMESG000065696.1 SmedASXL_003018SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
gutSMED30009602SMESG000065696.1 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30009602SMESG000065696.1 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30009602SMESG000065696.1 dd_Smed_v4_35838_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
zeta neoblastSMED30009602SMESG000065696.1 dd_Smed_v4_22938_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009602 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.001732:5150..11412 -4132
Homology
BLAST of SMED30009602 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 416.772 bits (1070), Expect = 5.697e-133
Identity = 255/285 (89.47%), Postives = 260/285 (91.23%), Query Frame = 3
Query:   45 MMENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKIEKSNKKETTKKQIIPEVVGXXXXXXXXXXXXFHEDSIKNRLRARNTSTINRLSNSNSSIDLPVIEHANPEKRKCQNSQSGDSIQDFFSHEIFKGGAALPNKTAQISXXXXXXXXXXXXXXXXXXESILENGSIDKSIINNYYIDLHKPIDKINADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIP------EKPISNRFIENQNQSNIDRSILINK 881
            MMENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKI K NKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKNRLRARNTSTINRLSNSNSSIDL VIEHAN EKRKCQN+QSGDSIQDFFSHEI KGGAALPNKTAQISKKKKRKMILKK+K+TKNTESILEN SIDKSIINNYYIDLH    KINADKSIINENMPSKL P NSSSID QH+SNRSP DNSSVIP      EK ISN FIEN+NQSNI  S LINK
Sbjct:    1 MMENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKILKPNKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKNRLRARNTSTINRLSNSNSSIDLSVIEHANLEKRKCQNNQSGDSIQDFFSHEISKGGAALPNKTAQISKKKKRKMILKKSKVTKNTESILENCSIDKSIINNYYIDLH----KINADKSIINENMPSKLHPINSSSIDIQHLSNRSPVDNSSVIPETGEVIEKSISNEFIENRNQSNIIDSGLINK 281          

HSP 2 Score: 111.309 bits (277), Expect = 6.889e-27
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  687 ADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL 932
            A+KSIINEN  S L   +SS I+   ++ +S  DNSSVIPEKPISNRFIENQNQSNIDRSILINKL LPIECLGSN DESGL
Sbjct:  824 ANKSIINENQ-SNLSSIDSSGIEILALTEQSQVDNSSVIPEKPISNRFIENQNQSNIDRSILINKLRLPIECLGSNNDESGL 904          

HSP 3 Score: 85.1149 bits (209), Expect = 5.152e-18
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 3
Query:  684 NADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIP------EKPISNRFIENQNQSNIDRSILINKLLLPIECLGS 911
            N+++SI++E +P KLPP NSSSID QH+SNRSP DNSSVIP      EK ISN FIEN NQSNI+ S+LINK    I  L S
Sbjct:  332 NSERSILSE-IPPKLPPINSSSIDIQHLSNRSPVDNSSVIPETGEFIEKSISNEFIENLNQSNINDSVLINKSQTSIRYLES 412          

HSP 4 Score: 61.2326 bits (147), Expect = 4.419e-10
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  612 ENGSIDKSIINNYYIDLHKPIDKINADKSIINE--NMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINK 881
            EN S    IINN +     P+  +++++SI++E   + S L P NSS I+ + +S +SP  NS ++PEK ISN FIE +NQSNI  S+LINK
Sbjct:  558 ENPSKINDIINNSH-----PLINLDSERSILSEIPEIISILSPINSSGIEIETLSEQSPVKNSLLLPEKSISNEFIEYRNQSNIIDSVLINK 644          

HSP 5 Score: 59.3066 bits (142), Expect = 1.751e-9
Identity = 43/77 (55.84%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  687 ADKSIINEN--MPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGS 911
            +DKSIINEN  M SKL  KN        +SN+S  DNSSV PEK ISN FIEN NQS+I  S+LIN     I  L S
Sbjct:  670 SDKSIINENSKMSSKLSHKN--------LSNKSQVDNSSVFPEKSISNEFIENLNQSDIIDSVLINNSQTSIRYLES 738          

HSP 6 Score: 55.8398 bits (133), Expect = 2.442e-8
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  675 DKINADKSIINE--NMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL 932
            DK  AD+SIINE   +PS L   +SSS++ Q +S                   FIEN+NQSNID S++IN+  LP+EC GSNT+E GL
Sbjct:  749 DKNIADQSIINEISEIPSNLSSIDSSSVEIQALS------------------EFIENRNQSNIDGSVIINEFQLPMECSGSNTNEPGL 818          
BLAST of SMED30009602 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 413.69 bits (1062), Expect = 6.447e-132
Identity = 254/284 (89.44%), Postives = 259/284 (91.20%), Query Frame = 3
Query:   48 MENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKIEKSNKKETTKKQIIPEVVGXXXXXXXXXXXXFHEDSIKNRLRARNTSTINRLSNSNSSIDLPVIEHANPEKRKCQNSQSGDSIQDFFSHEIFKGGAALPNKTAQISXXXXXXXXXXXXXXXXXXESILENGSIDKSIINNYYIDLHKPIDKINADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIP------EKPISNRFIENQNQSNIDRSILINK 881
            MENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKI K NKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKNRLRARNTSTINRLSNSNSSIDL VIEHAN EKRKCQN+QSGDSIQDFFSHEI KGGAALPNKTAQISKKKKRKMILKK+K+TKNTESILEN SIDKSIINNYYIDLH    KINADKSIINENMPSKL P NSSSID QH+SNRSP DNSSVIP      EK ISN FIEN+NQSNI  S LINK
Sbjct:    1 MENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKILKPNKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKNRLRARNTSTINRLSNSNSSIDLSVIEHANLEKRKCQNNQSGDSIQDFFSHEISKGGAALPNKTAQISKKKKRKMILKKSKVTKNTESILENCSIDKSIINNYYIDLH----KINADKSIINENMPSKLHPINSSSIDIQHLSNRSPVDNSSVIPETGEVIEKSISNEFIENRNQSNIIDSGLINK 280          

HSP 2 Score: 111.309 bits (277), Expect = 7.937e-27
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  687 ADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL 932
            A+KSIINEN  S L   +SS I+   ++ +S  DNSSVIPEKPISNRFIENQNQSNIDRSILINKL LPIECLGSN DESGL
Sbjct:  823 ANKSIINENQ-SNLSSIDSSGIEILALTEQSQVDNSSVIPEKPISNRFIENQNQSNIDRSILINKLRLPIECLGSNNDESGL 903          

HSP 3 Score: 85.1149 bits (209), Expect = 6.032e-18
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 3
Query:  684 NADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIP------EKPISNRFIENQNQSNIDRSILINKLLLPIECLGS 911
            N+++SI++E +P KLPP NSSSID QH+SNRSP DNSSVIP      EK ISN FIEN NQSNI+ S+LINK    I  L S
Sbjct:  331 NSERSILSE-IPPKLPPINSSSIDIQHLSNRSPVDNSSVIPETGEFIEKSISNEFIENLNQSNINDSVLINKSQTSIRYLES 411          

HSP 4 Score: 61.2326 bits (147), Expect = 4.792e-10
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  612 ENGSIDKSIINNYYIDLHKPIDKINADKSIINE--NMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINK 881
            EN S    IINN +     P+  +++++SI++E   + S L P NSS I+ + +S +SP  NS ++PEK ISN FIE +NQSNI  S+LINK
Sbjct:  557 ENPSKINDIINNSH-----PLINLDSERSILSEIPEIISILSPINSSGIEIETLSEQSPVKNSLLLPEKSISNEFIEYRNQSNIIDSVLINK 643          

HSP 5 Score: 59.3066 bits (142), Expect = 1.899e-9
Identity = 43/77 (55.84%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  687 ADKSIINEN--MPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGS 911
            +DKSIINEN  M SKL  KN        +SN+S  DNSSV PEK ISN FIEN NQS+I  S+LIN     I  L S
Sbjct:  669 SDKSIINENSKMSSKLSHKN--------LSNKSQVDNSSVFPEKSISNEFIENLNQSDIIDSVLINNSQTSIRYLES 737          

HSP 6 Score: 55.8398 bits (133), Expect = 2.508e-8
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  675 DKINADKSIINE--NMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL 932
            DK  AD+SIINE   +PS L   +SSS++ Q +S                   FIEN+NQSNID S++IN+  LP+EC GSNT+E GL
Sbjct:  748 DKNIADQSIINEISEIPSNLSSIDSSSVEIQALS------------------EFIENRNQSNIDGSVIINEFQLPMECSGSNTNEPGL 817          
BLAST of SMED30009602 vs. Planmine SMEST
Match: SMESG000065696.1 (SMESG000065696.1)

HSP 1 Score: 407.912 bits (1047), Expect = 7.372e-130
Identity = 254/289 (87.89%), Postives = 259/289 (89.62%), Query Frame = 3
Query:   48 MENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKIEKSNKKETTKKQIIPEVVGXXXXXXXXXXXXFHEDSIKNRLRARNTSTINRLSNSNSSIDLPVIEHANPE-----KRKCQNSQSGDSIQDFFSHEIFKGGAALPNKTAQISXXXXXXXXXXXXXXXXXXESILENGSIDKSIINNYYIDLHKPIDKINADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIP------EKPISNRFIENQNQSNIDRSILINK 881
            MENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKI K NKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKNRLRARNTSTINRLSNSNSSIDL VIEHAN E     KRKCQN+QSGDSIQDFFSHEI KGGAALPNKTAQISKKKKRKMILKK+K+TKNTESILEN SIDKSIINNYYIDLH    KINADKSIINENMPSKL P NSSSID QH+SNRSP DNSSVIP      EK ISN FIEN+NQSNI  S LINK
Sbjct:    1 MENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFSFKSPKADKNKILKPNKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKNRLRARNTSTINRLSNSNSSIDLSVIEHANLEVKPQRKRKCQNNQSGDSIQDFFSHEISKGGAALPNKTAQISKKKKRKMILKKSKVTKNTESILENCSIDKSIINNYYIDLH----KINADKSIINENMPSKLHPINSSSIDIQHLSNRSPVDNSSVIPETGEVIEKSISNEFIENRNQSNIIDSGLINK 285          

HSP 2 Score: 111.309 bits (277), Expect = 7.362e-27
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  687 ADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL 932
            A+KSIINEN  S L   +SS I+   ++ +S  DNSSVIPEKPISNRFIENQNQSNIDRSILINKL LPIECLGSN DESGL
Sbjct:  828 ANKSIINENQ-SNLSSIDSSGIEILALTEQSQVDNSSVIPEKPISNRFIENQNQSNIDRSILINKLRLPIECLGSNNDESGL 908          

HSP 3 Score: 85.1149 bits (209), Expect = 5.448e-18
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 3
Query:  684 NADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNSSVIP------EKPISNRFIENQNQSNIDRSILINKLLLPIECLGS 911
            N+++SI++E +P KLPP NSSSID QH+SNRSP DNSSVIP      EK ISN FIEN NQSNI+ S+LINK    I  L S
Sbjct:  336 NSERSILSE-IPPKLPPINSSSIDIQHLSNRSPVDNSSVIPETGEFIEKSISNEFIENLNQSNINDSVLINKSQTSIRYLES 416          

HSP 4 Score: 61.2326 bits (147), Expect = 4.500e-10
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  612 ENGSIDKSIINNYYIDLHKPIDKINADKSIINE--NMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINK 881
            EN S    IINN +     P+  +++++SI++E   + S L P NSS I+ + +S +SP  NS ++PEK ISN FIE +NQSNI  S+LINK
Sbjct:  562 ENPSKINDIINNSH-----PLINLDSERSILSEIPEIISILSPINSSGIEIETLSEQSPVKNSLLLPEKSISNEFIEYRNQSNIIDSVLINK 648          

HSP 5 Score: 59.3066 bits (142), Expect = 1.784e-9
Identity = 43/77 (55.84%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  687 ADKSIINEN--MPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGS 911
            +DKSIINEN  M SKL  KN        +SN+S  DNSSV PEK ISN FIEN NQS+I  S+LIN     I  L S
Sbjct:  674 SDKSIINENSKMSSKLSHKN--------LSNKSQVDNSSVFPEKSISNEFIENLNQSDIIDSVLINNSQTSIRYLES 742          

HSP 6 Score: 55.8398 bits (133), Expect = 2.487e-8
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  675 DKINADKSIINE--NMPSKLPPKNSSSIDFQHISNRSPADNSSVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL 932
            DK  AD+SIINE   +PS L   +SSS++ Q +S                   FIEN+NQSNID S++IN+  LP+EC GSNT+E GL
Sbjct:  753 DKNIADQSIINEISEIPSNLSSIDSSSVEIQALS------------------EFIENRNQSNIDGSVIINEFQLPMECSGSNTNEPGL 822          
The following BLAST results are available for this feature:
BLAST of SMED30009602 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30009602 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000065696.15.697e-13389.47SMESG000065696.1[more]
SMESG000065696.16.447e-13289.44SMESG000065696.1[more]
SMESG000065696.17.372e-13087.89SMESG000065696.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009602 ID=SMED30009602|Name=SMED30009602|organism=Schmidtea mediterranea sexual|type=transcript|length=934bp
GCAGTCGAGTTATTATAAATTTGAATATTTTTTACTCGTAGAAAATGATG
GAGAATACATTAGAATTTTCACTTGACTCATCTGTTGATATAGATCAATA
TGATTGGAGCACTCAAATAACTAACTATAGTGATTTAACCTTCAATAATT
CGACTGCTAAAAAATTTTCTAAAAAAAATGTCACGAATTTCTCTTTTAAA
TCTCCCAAAGCTGATAAAAACAAAATAGAAAAGTCCAACAAAAAGGAAAC
AACAAAGAAACAGATAATTCCAGAGGTAGTCGGCAAAAAGAAATGTAAAC
AAAAACTCAATATCATCAAATTTCATGAAGATTCTATTAAGAATCGATTG
AGAGCGAGGAATACAAGCACAATCAACCGTCTATCCAATAGCAACTCGAG
TATTGATTTACCCGTTATCGAGCATGCAAATCCCGAGAAACGCAAATGTC
AAAACAGCCAATCAGGAGACAGTATTCAGGATTTCTTTTCCCATGAGATT
TTTAAAGGAGGAGCCGCATTGCCAAATAAAACAGCTCAAATTTCTAAAAA
GAAAAAAAGGAAAATGATTTTGAAAAAAAACAAAATGACCAAAAACACCG
AGTCGATTTTAGAAAATGGCTCGATCGATAAATCTATTATTAATAATTAT
TATATTGATTTACATAAGCCTATCGATAAAATAAATGCCGATAAATCGAT
TATTAATGAAAATATGCCATCAAAATTGCCCCCAAAAAATTCATCTAGTA
TCGACTTTCAACATATATCCAATAGATCACCGGCTGACAATTCCTCAGTT
ATTCCTGAAAAACCAATTTCCAATCGATTCATTGAAAATCAAAATCAGTC
AAATATTGATCGCTCTATATTAATCAATAAATTGCTATTGCCAATAGAAT
GCTTAGGATCAAATACAGACGAGTCGGGGCTAGA
back to top

protein sequence of SMED30009602-orf-1

>SMED30009602-orf-1 ID=SMED30009602-orf-1|Name=SMED30009602-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=296bp
MMENTLEFSLDSSVDIDQYDWSTQITNYSDLTFNNSTAKKFSKKNVTNFS
FKSPKADKNKIEKSNKKETTKKQIIPEVVGKKKCKQKLNIIKFHEDSIKN
RLRARNTSTINRLSNSNSSIDLPVIEHANPEKRKCQNSQSGDSIQDFFSH
EIFKGGAALPNKTAQISKKKKRKMILKKNKMTKNTESILENGSIDKSIIN
NYYIDLHKPIDKINADKSIINENMPSKLPPKNSSSIDFQHISNRSPADNS
SVIPEKPISNRFIENQNQSNIDRSILINKLLLPIECLGSNTDESGL
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000026gut
PLANA:0002109X1 cell