DNA repair and recombination protein RAD54B
|
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009590 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Human
Match: RAD54B (RAD54 homolog B [Source:HGNC Symbol;Acc:HGNC:17228]) HSP 1 Score: 519.235 bits (1336), Expect = 2.828e-168 Identity = 328/799 (41.05%), Postives = 473/799 (59.20%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSS-----TDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG---QRQNQQKPFCNTSLSHLNSWTHWVGE 2850
+ S VKY+SV + KPSKKKHK W+GD + + L + EGK++G + ++ +EEG + I GK +E++ + F + L + + S+ + F SS D + +P+ + MPRP +H + N +C P+ DV+ DP LV +RPHQ +G+IF+YECV G R + GAILAD MGLGKT+Q I+LI + QGPY + +I++ LIV P SLV NWK EF+KW+G++ I F V D +E+F +S+ SVLI+SYEMLLR+++ ++ + FDL++CDE HRLK+ + KT A+ SL ++RI+LTGTP+QND+ EFF L+ F NPG+LG + S+R+ + PI +REP AS + E G + L LT FILRRT+ + YLP K E ++FC P +Q +LY+ L+ + ++ L+ N L CI L+KLCN P LL + +KE ST +K E SL + + L + + +L E SGKL V +++L L+ EK+VLVS++TQTL++L+++CK A R+DG TP + R +IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ L ++VDL+ + ++ FS EEL+N+FT H S C TH LL+C+C V ++ + I SR C+LG Q+ N KP S+S L W H+ G+
Sbjct: 119 SDSLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLEGKDIGRGIGYKFKELEKIEEGQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHSSQVARKCFSNPFKSVCKPSSKENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILG-SLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSP---HLICIGALKKLCNHPCLLFNSIKEKECSST------CDKNEEKSLYKGL------LSVFPADYNPLLFTEKE-------SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVEELKNLFTLHESS----DCVTHDLLDCECT---GEEVHTGDSLEKFIVSR---DCQLGPHHQKSNSLKPL---SMSQLKQWKHFSGD 880
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Human
Match: FSBP (fibrinogen silencer binding protein [Source:HGNC Symbol;Acc:HGNC:43653]) HSP 1 Score: 493.812 bits (1270), Expect = 9.752e-161 Identity = 303/732 (41.39%), Postives = 434/732 (59.29%), Query Frame = 1
Query: 718 IGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSS-----TDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG---QRQNQQKPFCNTSLSHLNSWTHWVGE 2850
I GK +E++ + F + L + + S+ + F SS D + +P+ + MPRP +H + N +C P+ DV+ DP LV +RPHQ +G+IF+YECV G R + GAILAD MGLGKT+Q I+LI + QGPY + +I++ LIV P SLV NWK EF+KW+G++ I F V D +E+F +S+ SVLI+SYEMLLR+++ ++ + FDL++CDE HRLK+ + KT A+ SL ++RI+LTGTP+QND+ EFF L+ F NPG+LG + S+R+ + PI +REP AS + E G + L LT FILRRT+ + YLP K E ++FC P +Q +LY+ L+ + ++ L+ N L CI L+KLCN P LL + +KE ST +K E SL + + L + + +L E SGKL V +++L L+ EK+VLVS++TQTL++L+++CK A R+DG TP + R +IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ L ++VDL+ + ++ FS EEL+N+FT H S C TH LL+C+C V ++ + I SR C+LG Q+ N KP S+S L W H+ G+
Sbjct: 2 ICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHSSQVARKCFSNPFKSVCKPSSKENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILG-SLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSP---HLICIGALKKLCNHPCLLFNSIKEKECSST------CDKNEEKSLYKGL------LSVFPADYNPLLFTEKE-------SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVEELKNLFTLHESS----DCVTHDLLDCEC---TGEEVHTGDSLEKFIVSR---DCQLGPHHQKSNSLKPL---SMSQLKQWKHFSGD 696
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Human
Match: RAD54L (RAD54 like [Source:HGNC Symbol;Acc:HGNC:9826]) HSP 1 Score: 355.91 bits (912), Expect = 3.056e-108 Identity = 226/605 (37.36%), Postives = 336/605 (55.54%), Query Frame = 1
Query: 919 PRPTASHN-FKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYK-MLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
P P ++H+ K + + P+ V+ DP L + +RPHQ +GV F++ECV R G I+AD MGLGKT+Q I L+ +L Q P E + I + ++V PSSLV NW NE KW+G +I P + G D +E F + + +LI+SYE +V LQ S L++CDE HRLK+ N+T+ A++SL RR+L++GTP+QND+ E+F+LV F N G+LG E F++ F PI R+ AS + G E L + ++RRT + + YLP K E ++ C TP+Q +LYK L + K ++ LE + ++ +L+ I L+KLCN P L+ +++E+ + + S +L + K+ L++ ILA++ R ++ +K+VLVS++TQTLDL EKLC+ R+DG+ R ++V FN S + V +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++ GT+EE + QRQ K+ + S + + FS EL+ +F S TH L+C C N
Sbjct: 123 PPPLSAHDQLKLDKEKLPVH-VVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSP-ECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE-FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGK----MSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDY-------ILAVT---------------------RSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKK--ALSSCVVDEEQDVERHFSLGELKELFILDEASLSD----THDRLHCRRCVN 686
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Human
Match: RAD54L (RAD54 like [Source:HGNC Symbol;Acc:HGNC:9826]) HSP 1 Score: 355.91 bits (912), Expect = 3.056e-108 Identity = 226/605 (37.36%), Postives = 336/605 (55.54%), Query Frame = 1
Query: 919 PRPTASHN-FKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYK-MLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
P P ++H+ K + + P+ V+ DP L + +RPHQ +GV F++ECV R G I+AD MGLGKT+Q I L+ +L Q P E + I + ++V PSSLV NW NE KW+G +I P + G D +E F + + +LI+SYE +V LQ S L++CDE HRLK+ N+T+ A++SL RR+L++GTP+QND+ E+F+LV F N G+LG E F++ F PI R+ AS + G E L + ++RRT + + YLP K E ++ C TP+Q +LYK L + K ++ LE + ++ +L+ I L+KLCN P L+ +++E+ + + S +L + K+ L++ ILA++ R ++ +K+VLVS++TQTLDL EKLC+ R+DG+ R ++V FN S + V +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++ GT+EE + QRQ K+ + S + + FS EL+ +F S TH L+C C N
Sbjct: 123 PPPLSAHDQLKLDKEKLPVH-VVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSP-ECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE-FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGK----MSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDY-------ILAVT---------------------RSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKK--ALSSCVVDEEQDVERHFSLGELKELFILDEASLSD----THDRLHCRRCVN 686
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Human
Match: RAD54L (RAD54 like [Source:HGNC Symbol;Acc:HGNC:9826]) HSP 1 Score: 355.91 bits (912), Expect = 3.056e-108 Identity = 226/605 (37.36%), Postives = 336/605 (55.54%), Query Frame = 1
Query: 919 PRPTASHN-FKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYK-MLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
P P ++H+ K + + P+ V+ DP L + +RPHQ +GV F++ECV R G I+AD MGLGKT+Q I L+ +L Q P E + I + ++V PSSLV NW NE KW+G +I P + G D +E F + + +LI+SYE +V LQ S L++CDE HRLK+ N+T+ A++SL RR+L++GTP+QND+ E+F+LV F N G+LG E F++ F PI R+ AS + G E L + ++RRT + + YLP K E ++ C TP+Q +LYK L + K ++ LE + ++ +L+ I L+KLCN P L+ +++E+ + + S +L + K+ L++ ILA++ R ++ +K+VLVS++TQTLDL EKLC+ R+DG+ R ++V FN S + V +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++ GT+EE + QRQ K+ + S + + FS EL+ +F S TH L+C C N
Sbjct: 123 PPPLSAHDQLKLDKEKLPVH-VVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSP-ECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE-FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGK----MSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDY-------ILAVT---------------------RSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKK--ALSSCVVDEEQDVERHFSLGELKELFILDEASLSD----THDRLHCRRCVN 686
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Celegans
Match: rad-54 (pep chromosome:WBcel235:I:9065087:9070264:1 gene:WBGene00004298.1 transcript:W06D4.6.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rad-54) HSP 1 Score: 360.918 bits (925), Expect = 8.160e-110 Identity = 223/585 (38.12%), Postives = 322/585 (55.04%), Query Frame = 1
Query: 979 VIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQI------------IPFCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNR-ISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCC 2688
V+ DP + + +RPHQ DGV FM++CV G G I+AD MGLGKT+Q I+L+ +L Q P T + + +IVCPSSLV NW E +KW+GT++ I C++ ++ K ++ VLI+SYE L +++CDE HRLK+ N T+ A+ L+ RR+L++GTP+QND+ E+F+LV F NPG+LG E FR++F N I R+ AS++ ++G E + + L + I+RRT + T YLP K E+II C + +Q+ LY L+EC+ + +E ++ G AL+ I L+KLCN P L+ +NR R K ++ E+ K D SGK+ V +L R +K VLVS++TQT+D +LCK R+DGS R +IV FN S LLS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL+ TG++EE + QRQ K+ + S + + + FS E+LR +F ++S + TH+ L C C
Sbjct: 192 VVADPVVGKILRPHQRDGVKFMWDCVTGINIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPT-VSKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGKREQIIACLNSFMADSKMRCAI--PVLIISYETFRLYANILHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASE-FRKKFENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDK--GATASALSFITHLKKLCNHPYLVYDEFQKPDNR--------------------FRNKCLSIFPESFNPKSF---------DPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKK--ALSSCVVDAGEDVARHFSSEQLRELFK--LESTV--ASDTHEKLKCKRC 735
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Celegans
Match: Y116A8C.13 (pep chromosome:WBcel235:IV:16950065:16962868:1 gene:WBGene00013792.1 transcript:Y116A8C.13a.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y116A8C.13) HSP 1 Score: 327.02 bits (837), Expect = 4.429e-97 Identity = 258/767 (33.64%), Postives = 371/767 (48.37%), Query Frame = 1
Query: 523 SSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKEL--GSSMRSALSKVILEEGSSFHIGGKYVEILS--AVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQISMPRPTASHNFKHNP---------------------------------DCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECV--AGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVS---GDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEI-VNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDC 2685
S+ + + V YGK S +KHK W+GDG + L S + +++ SS L + LE+G +IG VEI A P S +P N E + + SS LG I +P+P + + P D + V D R R +RPHQ G+ F+++ + + G GAILAD MGLGK++QT+A +L +G + L CLI+ PSSLV NWK EF+KW P ++ D++ + T L L++SY++ R+VE L+ + FD++VCDE H+LK+ K + SL+I RR++LTGTP+QND +EF++L+ F P V G E FR+ + P N+ I+E C +LRRT V+ +LP K EYI+FC +P+QK ++ SE + DAL+ I R+L N P LL+ + +K +S K L L D KE SGKL M+ RL E V+VS++ +TLD++++LC+ L+ + R+DG T R ++V FN + LLS KAGG GLNLIGA+R++L+D DWNPA D QAMARIWRDGQ +YRLITTGT+EE +LQRQ+ K+ ++D + TF+ E+L++IFTF + C TH L C C
Sbjct: 18 SAEIARFVVLYGKASTRKHKIWEGDGLLVCFTDSCLLKSEDERDVICRSSALKGLDQ--LEDGRIINIGSWSVEIQERIATGPPQKPISAQKPEIQSPMPPMTPGNSENVENR----KRGGFSSPFLG-----IELPKPLSKRSATFVPPLIGSESSSSGGSSSSTIQEKIPPFILNEQDILDRKTTSAVTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNGGGGGAILADDMGLGKSLQTMAATWALL-KGSKTAQQLANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTIKLM-PYLVISYDLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVE-FRKM------CSDRPEQLNELIDE-C-------------MLRRTAADVDLKHLPEKHEYILFCAASPIQKHVH--------------SEICDYMTGDALSLIFFARQLANHPKLLLDNLREKTEKSKA------HKHSPLLLAFD------GAHMPRGGVKE--------------SGKLTALVDMIKCFRLLQ-ECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQI-KKTGLGCVIDAIEVGDTIATFTDEDLKDIFTF---TGSATECNTHDLCECPC 705
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Celegans
Match: Y116A8C.13 (pep chromosome:WBcel235:IV:16950066:16962868:1 gene:WBGene00013792.1 transcript:Y116A8C.13b.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Y116A8C.13) HSP 1 Score: 313.153 bits (801), Expect = 3.702e-93 Identity = 217/578 (37.54%), Postives = 309/578 (53.46%), Query Frame = 1
Query: 979 VIFDPRLVRRMRPHQIDGVIFMYECV--AGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVS---GDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEI-VNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDC 2685
V D R R +RPHQ G+ F+++ + + G GAILAD MGLGK++QT+A +L +G + L CLI+ PSSLV NWK EF+KW P ++ D++ + T L L++SY++ R+VE L+ + FD++VCDE H+LK+ K + SL+I RR++LTGTP+QND +EF++L+ F P V G E FR+ + P N+ I+E C +LRRT V+ +LP K EYI+FC +P+QK ++ SE + DAL+ I R+L N P LL+ + +K +S K L L D KE SGKL M+ RL E V+VS++ +TLD++++LC+ L+ + R+DG T R ++V FN + LLS KAGG GLNLIGA+R++L+D DWNPA D QAMARIWRDGQ +YRLITTGT+EE +LQRQ+ K+ ++D + TF+ E+L++IFTF + C TH L C C
Sbjct: 83 VTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNGGGGGAILADDMGLGKSLQTMAATWALL-KGSKTAQQLANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVIALTANDITTYQSTIKLM-PYLVISYDLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVE-FRKM------CSDRPEQLNELIDE-C-------------MLRRTAADVDLKHLPEKHEYILFCAASPIQKHVH--------------SEICDYMTGDALSLIFFARQLANHPKLLLDNLREKTEKSKA------HKHSPLLLAFD------GAHMPRGGVKE--------------SGKLTALVDMIKCFRLLQ-ECTVIVSNYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQI-KKTGLGCVIDAIEVGDTIATFTDEDLKDIFTF---TGSATECNTHDLCECPC 592
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Celegans
Match: chd-3 (Chromodomain-helicase-DNA-binding protein 3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q22516]) HSP 1 Score: 218.394 bits (555), Expect = 1.103e-57 Identity = 164/537 (30.54%), Postives = 254/537 (47.30%), Query Frame = 1
Query: 1009 MRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKW---------IGTQ------------IIPFCVSGDVSIEKFT--QSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL--SGKLWVTAQMLMRLKNGEKLVLV-SHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQ 2538
+ P+Q++G+ ++ C + NGT AILAD MGLGKTVQ++ + ++ +G + LI P S ++NW+ E E W +G + + V G + K ++LK VL+ SYE + + L + + +V DEAHRLK+ + F + I+ R+LLTGTPLQN+++E F+L+ F P ESF F S + E+ E L L +LRR + +P+K E I+ + +QK+ YK ++ + D + + GT + + I+ L+K CN P L ++ ++ KL+N +E S L+ +GK + +ML +LK+G VL+ S T LD+LE C +RIDGS R + +N K+ V LLS +AGG G+NL A+ +I+YD DWNP D QA +R R GQK +V +YR +T G+VEE + VAK++
Sbjct: 616 LHPYQLEGINWLRHCWS-----NGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGP-----FLIAAPLSTIINWEREAELWCPDFYVVTYVGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLENLKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRFN-QLESFTAEF------------SEISKEDQIEK---LHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNIL---TRNFDALNVKNGGTQMSLINIIMELKKCCNHPYLFMKACLEA-------------------------PKLKNGMYEGSA---------------LIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERIT--SVAKKK 1081
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Celegans
Match: let-418 (pep chromosome:WBcel235:V:5826833:5832866:1 gene:WBGene00002637.1 transcript:F26F12.7.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:let-418) HSP 1 Score: 214.157 bits (544), Expect = 2.913e-56 Identity = 160/540 (29.63%), Postives = 261/540 (48.33%), Query Frame = 1
Query: 1006 RMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQG----PYENETLIQRCLIVCPSSLVLNWKNEFEKWIGT-QIIPFC----------------VSGDV------SIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLV-SHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQ 2538
++ P+Q++G+ ++ C + NGT AILAD MGLGKTVQ++ + ++ +G P+ LI P S ++NW+ E E+W ++ + V G V S K T+++K VL+ SYE + + L + + +V DEAHRLK+ + F + I R+LLTGTPLQN+++E F+L+ F +KE F Q + A + IE+ L L +LRR + +P+K E I+ + +QK+ YK ++ + D + + GT + + ++ L+K CN P L ++ ++ E + Y E +L+++ SGK + +ML +LK+G VL+ S T+ LD++E LC+ +RIDGS +R + +N ++ + LLS +AGG G+NL A+ +I+YD DWNP D QA +R R GQK +V +YR +T +VEE + VAK++
Sbjct: 601 KLHPYQLEGLNWLRHCWS-----NGTDAILADEMGLGKTVQSLTFLYSLMKEGHCKGPF---------LIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNF-------LSKERFNQ--LEAFTAEFNEISKEDQIEK-------LHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNIL---TRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKAELEA---PKEKNGMY----EGTALIKN-------------------------------SGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKIT--SVAKKK 1067
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Fly
Match: okr (gene:FBgn0002989 transcript:FBtr0077673) HSP 1 Score: 340.887 bits (873), Expect = 1.165e-102 Identity = 216/582 (37.11%), Postives = 327/582 (56.19%), Query Frame = 1
Query: 979 VIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDV------SIEKFTQS---LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVL-LLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCC 2688
V+ DP L +RPHQ +GV FMYECV G R N G I+AD MGLGKT+Q + L+ +L QGP E + I + ++V PSSLV NW+ EF KW+ +++ + G ++E+F+ + L VL++SYE E L +++CDE HRLK+ N T+ A+ L+ KRR+LL+GTP+QND+ E+++LV F NP +LG F++ F + I + ++ Q + E + L L I+RRT + T YLP K E +I T +Q +LY ++ +++ L ++ ++ ALA I L+K+C+ P L+ E L+ E + QN+ N K++ + LSGK + ML +R + +K+VL+S++TQTLDL E+L + R+DG+ R ++V FN L +LS KAGG GLNLIGANR+ ++D DWNPA D QAMAR+WRDGQK +YRL+ +G++EE +LQRQ K+ LS++++D + S F++++L+++FTF D+ I TH L C C
Sbjct: 146 VVVDPLLSNILRPHQREGVRFMYECVEGKRG-NFNGCIMADEMGLGKTLQCVTLVWTLLRQGP-ECKPTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLG-TAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSL-ADCNEKASLTALADITTLKKICSHPDLIY---------------------EKLTAREKGFENSQNVLPSNYKPKDL---------NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKH--FTRDDLKDLFTF--DANILSD--THDKLKCKRC 687
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Fly
Match: Chd3 (gene:FBgn0023395 transcript:FBtr0074998) HSP 1 Score: 206.453 bits (524), Expect = 1.504e-54 Identity = 174/600 (29.00%), Postives = 278/600 (46.33%), Query Frame = 1
Query: 907 QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQG----PYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG----------DVSIEKFTQS--------LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLES--EEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLK-NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNR-ISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNT-FSKEELRNIFTF 2625
Q P PT N K+ + QP+ F ++ P QI+GV ++ + G ILAD MGLGKT+QT+ + + +G P+ LI P S + NW+ E E W V G ++S E+ T K +V++ SYE + + FL + + +V DEAHRL+ +K F + +I ++LLTGTPLQN+++E F+L+ F + G + ++F+ F + ++E E L + + +LRR + +P K E+I+ + +QK+ YK + L K+ ++ ++ G L ++ LRK CN P L + E + Y E SL + SGKL + ++ML +LK + +++L S T+ L++LE + RIDGS LR + + FN +S V LLS +AGG G+NL A+ +I++D DWNP D QA +R R GQK +V +YR +T +VEE ++ QVAK ++ + + + + T FSK+EL +I F
Sbjct: 239 QRDRPAPTIDLNKKY--EDQPV----FLKEAGLKLHPFQIEGVSWLR-----YSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPF---------LISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSSGKFN-DLQTFQAEFT---DVSKE------------EQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHI-----LTKNFKALNQKGGGRVCSLLNIMMDLRKCCNHPYL---FPSAAEEATISPSGLY----EMSSLTK-------------------------------ASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIM--QVAKHKMMLTHLVVRPGMGGMTTNFSKDELEDILRF 757
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Fly
Match: Hel89B (gene:FBgn0022787 transcript:FBtr0301715) HSP 1 Score: 207.223 bits (526), Expect = 6.041e-54 Identity = 166/551 (30.13%), Postives = 264/551 (47.91%), Query Frame = 1
Query: 976 DVIFDPRLVR----------RMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWI--GTQIIPFCVSG-DVSIEKFTQSL--KNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLY-----KMLVECKSLQKDLESEEFNGTAIDALACILM----LRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG--------EKLVLVSHFTQTLDLLEK--LCKNL-DIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQ 2523
D +F+P+ + +R +Q G+ +++ F IL D MGLGKT+QTI +++ N + L++CP +L +W E EK++ G+ + P G V EK + K ++++ SY+ + ++++F G+ F+ V DE H +K+G K+ A++ L+ R++L+GTP+QN++ E ++L F PG LG K+ F QRF PI ++R+ +S + E G A L R F+LRR + LP K + C +P+Q +LY K L +C D S + A I L+ +CN P L++R E++ K L NS+ +I +H S KL Q+L+ G + ++ LD++E+ L ++L + R+DGS P++ R IV++FN +VLLL+ GG GLNL GA+ +I + DWNP D QAM R R GQK V VYRLIT ++EE ++ Q
Sbjct: 1329 DYLFNPKSIPNYKVPVPISVELRCYQQAGINWLW-----FLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLP-SLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQ-FVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQS------------------------EELTKVTSQLALSNSSLDDI---------EH--SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQ 1837
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Fly
Match: Hel89B (gene:FBgn0022787 transcript:FBtr0344471) HSP 1 Score: 207.223 bits (526), Expect = 6.041e-54 Identity = 166/551 (30.13%), Postives = 264/551 (47.91%), Query Frame = 1
Query: 976 DVIFDPRLVR----------RMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWI--GTQIIPFCVSG-DVSIEKFTQSL--KNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLY-----KMLVECKSLQKDLESEEFNGTAIDALACILM----LRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG--------EKLVLVSHFTQTLDLLEK--LCKNL-DIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQ 2523
D +F+P+ + +R +Q G+ +++ F IL D MGLGKT+QTI +++ N + L++CP +L +W E EK++ G+ + P G V EK + K ++++ SY+ + ++++F G+ F+ V DE H +K+G K+ A++ L+ R++L+GTP+QN++ E ++L F PG LG K+ F QRF PI ++R+ +S + E G A L R F+LRR + LP K + C +P+Q +LY K L +C D S + A I L+ +CN P L++R E++ K L NS+ +I +H S KL Q+L+ G + ++ LD++E+ L ++L + R+DGS P++ R IV++FN +VLLL+ GG GLNL GA+ +I + DWNP D QAM R R GQK V VYRLIT ++EE ++ Q
Sbjct: 1329 DYLFNPKSIPNYKVPVPISVELRCYQQAGINWLW-----FLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLP-SLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQ-FVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQS------------------------EELTKVTSQLALSNSSLDDI---------EH--SAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQ 1837
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Fly
Match: Iswi (gene:FBgn0011604 transcript:FBtr0087841) HSP 1 Score: 196.823 bits (499), Expect = 4.022e-51 Identity = 172/556 (30.94%), Postives = 258/556 (46.40%), Query Frame = 1
Query: 1009 MRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIIL---NQ-GPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGD-----VSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLI-LQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDA-LACILM-LRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL--SGKLWVTAQMLMRLK-NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRI-SCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQR-QVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTF 2625
MR +QI G+ +M NG ILAD MGLGKT+QTI+L+ + NQ GP+ +++ P S + NW NEF+KW + + C+ GD I + V + SYEM +R + ++ +V DEAHR+K+ +K + + R+L+TGTPLQN++ E + L+ F P V + E F + F +N + G +A + L + + F+LRR + L K E IF + +Q+ Y K L KD++ G L ILM LRK N P Y+ D E Y HL+ SGK+ + ++L +L+ G ++++ S T+ LD+LE C + R+DG TP R R + +FN S K + +LS +AGG G+NL A+ +I+YD DWNP D QAM R R GQK +V V+RLIT TVEE +++R +V + + + N +K+E+ NI F
Sbjct: 128 MRDYQIRGLNWMISLY-----ENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPH---------IVIVPKSTLQNWVNEFKKWCPS-LRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSS-EDFDEWF-----------NTNTCL--GDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWY-----TKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHP-----YLFD----GAEPGPPYT------------------------------------TDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRF 604
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Zebrafish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 493.812 bits (1270), Expect = 1.556e-158 Identity = 309/807 (38.29%), Postives = 454/807 (56.26%), Query Frame = 1
Query: 523 SSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSF-------ETDGNVVLSSSTVPTTDLSKYVNREF-KPVLLQTTVSSSTDLGSDEP------------QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKN---GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRI-SCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPN--GAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGEAE 2856
++ YYSV + K S +KHK W+GD + + L EG+++G S++ L EG + +GGK +E++ + + + + S TV T + V++ F KP L + TD D+P + MPRPTA H +++N P+ DV+ DP L +RPHQ +GV+F+YEC+ G R GAILAD MGLGKT+Q + ++ +L QGPY +++R L+VCP SLV NW EF KW+G + I + V D +E F S SVL++SYEMLLR+V+ L+ L F +++CDE HRLK+ + KT A+ +L RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + YL + E+ +FC PT +Q +LY++L+ + ++ L S T L CI L+KLCN P LL + +K + + E K+L E+ A S SGKL V +L +++ +++VLVS+ TQTLDLL+ +C + R+DG TP R +IV FN S +LLLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTG++EE + QRQV+KQ LS ++VDL+ ++ +FS EELR++F F ++ C TH LLNC C + N G+V++S +E G C+LG Q N S+S L W H+ G +
Sbjct: 128 TTTAHYYSVIWCKASSRKHKRWEGDAVLVARGRTVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVGGKQIEVMGVISDQDYAKGRCFQDAAVEIPAESPTVSKTPAYRPVSKSFTKPALKGGAL---TDSELDKPICKPRYDPNAPGALVMPRPTADHQWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACL-SGSHTYTHSPHLVCINALKKLCNHPALLYNTLQEKAD----------------EMYEGEVKELFPEEYSTG------AFSTAD------SGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHI-SFSAEELRDLFRFDPNTT----CLTHDLLNCKCSGDGNTPGSVKES---SEDTGRS----CQLGRQADNAISVPQRVSMSELMHWRHFSGAVQ 889
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Zebrafish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 476.093 bits (1224), Expect = 1.518e-152 Identity = 304/823 (36.94%), Postives = 450/823 (54.68%), Query Frame = 1
Query: 475 IPKIQSQNCNKETIVAS---SNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEP------------QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG----EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRI-SCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCD------CCENPNGAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGEAE 2856
+ ++ + +KE + S +N YYSV + K S +KHK W+GD + + L EG+++G S++ L EG + +GGK +E++ + + ++ +P S V++ P L+ + ++L D+P + MPRPTA H +++N P+ DV+ DP L +RPHQ +GV+F+YEC+ G R GAILAD MGLGKT+Q + ++ +L QGPY +++R L+VCP SLV NW EF KW+G + I + V D +E F S SVL++SYEMLLR+V+ L+ L F +++CDE HRLK+ + KT A+ +L RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + YL + E+ +FC PT +Q +LY++L+ + ++ L S T L CI L+KLCN P LL + +K + + E K+L E+ A S SGKL V +L + ++VLVS+ TQTLDLL+ +C + R+DG TP R +IV FN S +LLLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTG++EE + QRQV+KQ LS ++VDL+ ++ +FS EELR++F F ++ C TH LLNC CC + S C+LG Q N S+S L W H+ G +
Sbjct: 61 VKQLSATGVSKEVLSLSPSHTNSHYYSVIWCKASSRKHKRWEGDAVLVARGRTVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVGGKQIEVMGVISDQDYAKGRCFQDAAVEIPAE--SPTVSK--TPPALKGGALTDSEL--DKPICKPRYDPNAPGALVMPRPTADHQWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACL-SGSHTYTHSPHLVCINALKKLCNHPALLYNTLQEKAD----------------EMYEGEVKELFPEEYSTG------AFSTAD------SGKLLVLTDLLSAIHFFCLFLPRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHI-SFSAEELRDLFRFDPNTT----CLTHDLLNCKYMVKTICCSQGQTLIWGS--------------CQLGRQADNAISVPQRVSMSELMHWRHFSGAVQ 828
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Zebrafish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 474.167 bits (1219), Expect = 4.800e-152 Identity = 299/793 (37.70%), Postives = 439/793 (55.36%), Query Frame = 1
Query: 538 YYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEP------------QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG----EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRI-SCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGEAE 2856
YYSV + K S +KHK W+GD + + L EG+++G S++ L EG + +GGK +E++ + + G ++ T + V++ F L+ + ++L D+P + MPRPTA H +++N P+ DV+ DP L +RPHQ +GV+F+YEC+ G R GAILAD MGLGKT+Q + ++ +L QGPY +++R L+VCP SLV NW EF KW+G + I + V D +E F S SVL++SYEMLLR+V+ L+ L F +++CDE HRLK+ + KT A+ +L RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + YL + E+ +FC PT +Q +LY++L+ + ++ L S T L CI L+KLCN P LL +L + K+L E+ A S SGKL V +L + ++VLVS+ TQTLDLL+ +C + R+DG TP R +IV FN S +LLLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTG++EE + QRQV+KQ LS ++VDL+ ++ +FS EELR++F F ++ C TH LLNC+ ++ +NE G C+LG Q N S+S L W H+ G +
Sbjct: 62 YYSVIWCKASSRKHKRWEGDAVLVARGRTVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVGGKQIEVMGVISDQDY-AKGRCFQDAAVEIPTPAYRPVSKSFTKPALKGGALTDSEL--DKPICKPRYDPNAPGALVMPRPTADHQWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACL-SGSHTYTHSPHLVCINALKKLCNHPALLYN-----------------------TLQVRMFKELFPEEYSTG------AFSTAD------SGKLLVLTDLLSAIHFFCLFLPRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHI-SFSAEELRDLFRFDPNTT----CLTHDLLNCNISKSTT-----CPTLNEDTGRS----CQLGRQADNAISVPQRVSMSELMHWRHFSGAVQ 800
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Zebrafish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 470.7 bits (1210), Expect = 1.082e-150 Identity = 299/783 (38.19%), Postives = 435/783 (55.56%), Query Frame = 1
Query: 538 YYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREF-KPVLLQTTVSSSTDLGSDEP-QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG----EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRI-SCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGEAE 2856
YYSV + K S +KHK W+GD + + L EG+++G S++ L EG + +GGK +E++ + + ++ +P S + E KP+ + P + MPRPTA H +++N P+ DV+ DP L +RPHQ +GV+F+YEC+ G R GAILAD MGLGKT+Q + ++ +L QGPY +++R L+VCP SLV NW EF KW+G + I + V D +E F S SVL++SYEMLLR+V+ L+ L F +++CDE HRLK+ + KT A+ +L RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + YL + E+ +FC PT +Q +LY++L+ + ++ L S T L CI L+KLCN P LL + +K + + E K+L E+ A S SGKL V +L + ++VLVS+ TQTLDLL+ +C + R+DG TP R +IV FN S +LLLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTG++EE + QRQV+KQ LS ++VDL+ ++ +FS EELR++F F ++ C TH LLN C+ G SV + R C+LG Q N S+S L W H+ G +
Sbjct: 84 YYSVIWCKASSRKHKRWEGDAVLVARGRTVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVGGKQIEVMGVISDQDYAKGRCFQDAAVEIPAE--SALTDSELDKPI-------CKPRYDPNAPGALVMPRPTADHQWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACL-SGSHTYTHSPHLVCINALKKLCNHPALLYNTLQEKAD----------------EMYEGEVKELFPEEYSTG------AFSTAD------SGKLLVLTDLLSAIHFFCLFLPRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHI-SFSAEELRDLFRFDPNTT----CLTHDLLN---CKYHIGCHSCSVKESSEDTGR---SCQLGRQADNAISVPQRVSMSELMHWRHFSGAVQ 816
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Zebrafish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 454.136 bits (1167), Expect = 5.841e-147 Identity = 275/652 (42.18%), Postives = 387/652 (59.36%), Query Frame = 1
Query: 916 MPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRI-SCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPN--GAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGEAE 2856
MPRPTA H +++N P+ DV+ DP L +RPHQ +GV+F+YEC+ G R GAILAD MGLGKT+Q + ++ +L QGPY +++R L+VCP SLV NW EF KW+G + I + V D +E F S SVL++SYEMLLR+V+ L+ L F +++CDE HRLK+ + KT A+ +L RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + YL + E+ +FC PT +Q +LY++L+ + ++ L S T L CI L+KLCN P LL + + R D Y E K+L E+ A S SGKL V +L + E +VLVS+ TQTLDLL+ +C + R+DG TP R +IV FN S +LLLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTG++EE + QRQV+KQ LS ++VDL+ ++ +FS EELR++F F ++ C TH LLNC C + N G+V++S +E G C+LG Q N S+S L W H+ G +
Sbjct: 1 MPRPTADHQWQYNKSGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACL-SGSHTYTHSPHLVCINALKKLCNHPALLYNTL---QVRMCSADEMY----------EGEVKELFPEEYSTG------AFSTAD------SGKLLVLTDLLTCKLHTEMVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHI-SFSAEELRDLFRFDPNTT----CLTHDLLNCKCSGDGNTPGSVKES---SEDTGRS----CQLGRQADNAISVPQRVSMSELMHWRHFSGAVQ 613
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Xenopus
Match: rad54b (RAD54 homolog B [Source:NCBI gene;Acc:100158622]) HSP 1 Score: 517.694 bits (1332), Expect = 3.346e-168 Identity = 336/830 (40.48%), Postives = 480/830 (57.83%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVN-REFKPVLLQTTVSSSTD-----LGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKN---GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNNAEVN 2949
+SS KY+SV + K SKKKHK W+GD + + L EGK++G + + LEEG + IGGK +E++S + SP G S T P + S+ + + F L +S + L + +P+ MP+PT H + +N PI DV+ DP L +RPHQ +G++F+YECV G R + GAILAD MGLGKT+Q I+LI ++ QGPY + +I++ LIV P SLV NW+ EF+KW+GT+ I F V D +E+F +S SVLI+SYEMLLR +E +Q L FD+++CDE HRLK+ S KT A+ SL +RI+L+GTP+QND+ EFF L++F NP LG + ++R+ F PI +REP A+ + G E + L RLT FILRRT+ V +LP K E I+FC P+ Q LY+ L+ ++++ L +G + L CI L+KLCN P LL R + + +ST D ++ +L E + + +++ S E SGKL V +++L R++ E++VLVS++TQTL++L+ LC + R+DG TP R IV FN + S + LLS KAGG GLNLIGA+ +ILYDLDWNPA D QAMAR+WRDGQ+ V +YRL+TTG++EE + QRQ++KQ LS ++VDL+ ++ FS +ELRN+FT H D+ C TH LL CDC + + P I+ C+LG Q+Q N S+S L W H+ G+ D + + +S VF T N++VN
Sbjct: 77 SSSFAKYFSVVWCKASKKKHKKWEGDAVLIAKGRAVTLKDMEGKDIGKGTGYKIKDLESLEEGHTLMIGGKEIEVMSIM-SPEDYNSGRCFHSVVTSPASTPSESIQMKPFTNPLRNDRKGASKENMFKELQNIKPRHDPCAPNAFVMPKPTQHHQWAYNKTGLPIVDVVVDPYLAVHLRPHQKEGILFLYECVMGMRVNERFGAILADEMGLGKTLQCISLIWTLIRQGPYGGKPVIKKALIVTPGSLVKNWRKEFQKWLGTERIRVFAVDQDHKVEEFMKSPLYSVLIISYEMLLRCLEQIQSLDFDVVICDEGHRLKNTSIKTTSALASLTCSKRIILSGTPVQNDLQEFFALIEFVNPAALG-SLSTYRKIFEEPIIRSREPTATTEEKNLGEERAAELARLTGLFILRRTQEVINKFLPPKIESIVFCRPSQFQLDLYRKLLNSRTVKSCLLG---SGESSPHLVCIGALKKLCNHPFLLFRTI---QGKSTNPD------QDEHNLYESVAEVFPQ-DYDGSKISES------------ESGKLLVLSKLLSRIRELSPSERVVLVSNYTQTLNILQDLCNQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSTDFIFLLSSKAGGVGLNLIGASHLILYDLDWNPANDIQAMARVWRDGQRHTVHIYRLLTTGSLEEKIYQRQISKQGLSGAVVDLTKKSEHIR-FSLDELRNLFTLHEDT----DCVTHDLLQCDC------TITNCHSDGSPQKPLIHRSCQLGLHQDQLNK--NFSMSELMQWKHFSGQ----QNTEDPFLQMGKEHISFVFQNTT-NSQVN 861
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Xenopus
Match: rad54b (RAD54 homolog B [Source:NCBI gene;Acc:100158622]) HSP 1 Score: 518.079 bits (1333), Expect = 5.839e-168 Identity = 336/830 (40.48%), Postives = 480/830 (57.83%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVN-REFKPVLLQTTVSSSTD-----LGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKN---GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNNAEVN 2949
+SS KY+SV + K SKKKHK W+GD + + L EGK++G + + LEEG + IGGK +E++S + SP G S T P + S+ + + F L +S + L + +P+ MP+PT H + +N PI DV+ DP L +RPHQ +G++F+YECV G R + GAILAD MGLGKT+Q I+LI ++ QGPY + +I++ LIV P SLV NW+ EF+KW+GT+ I F V D +E+F +S SVLI+SYEMLLR +E +Q L FD+++CDE HRLK+ S KT A+ SL +RI+L+GTP+QND+ EFF L++F NP LG + ++R+ F PI +REP A+ + G E + L RLT FILRRT+ V +LP K E I+FC P+ Q LY+ L+ ++++ L +G + L CI L+KLCN P LL R + + +ST D ++ +L E + + +++ S E SGKL V +++L R++ E++VLVS++TQTL++L+ LC + R+DG TP R IV FN + S + LLS KAGG GLNLIGA+ +ILYDLDWNPA D QAMAR+WRDGQ+ V +YRL+TTG++EE + QRQ++KQ LS ++VDL+ ++ FS +ELRN+FT H D+ C TH LL CDC + + P I+ C+LG Q+Q N S+S L W H+ G+ D + + +S VF T N++VN
Sbjct: 104 SSSFAKYFSVVWCKASKKKHKKWEGDAVLIAKGRAVTLKDMEGKDIGKGTGYKIKDLESLEEGHTLMIGGKEIEVMS-IMSPEDYNSGRCFHSVVTSPASTPSESIQMKPFTNPLRNDRKGASKENMFKELQNIKPRHDPCAPNAFVMPKPTQHHQWAYNKTGLPIVDVVVDPYLAVHLRPHQKEGILFLYECVMGMRVNERFGAILADEMGLGKTLQCISLIWTLIRQGPYGGKPVIKKALIVTPGSLVKNWRKEFQKWLGTERIRVFAVDQDHKVEEFMKSPLYSVLIISYEMLLRCLEQIQSLDFDVVICDEGHRLKNTSIKTTSALASLTCSKRIILSGTPVQNDLQEFFALIEFVNPAALG-SLSTYRKIFEEPIIRSREPTATTEEKNLGEERAAELARLTGLFILRRTQEVINKFLPPKIESIVFCRPSQFQLDLYRKLLNSRTVKSCLLG---SGESSPHLVCIGALKKLCNHPFLLFRTI---QGKSTNPD------QDEHNLYESVAEVFPQ-DYDGSKISES------------ESGKLLVLSKLLSRIRELSPSERVVLVSNYTQTLNILQDLCNQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSTDFIFLLSSKAGGVGLNLIGASHLILYDLDWNPANDIQAMARVWRDGQRHTVHIYRLLTTGSLEEKIYQRQISKQGLSGAVVDLTKKSEHIR-FSLDELRNLFTLHEDT----DCVTHDLLQCDC------TITNCHSDGSPQKPLIHRSCQLGLHQDQLNK--NFSMSELMQWKHFSGQ----QNTEDPFLQMGKEHISFVFQNTT-NSQVN 888
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Xenopus
Match: rad54l (RAD54 like [Source:NCBI gene;Acc:407922]) HSP 1 Score: 355.525 bits (911), Expect = 3.941e-108 Identity = 217/577 (37.61%), Postives = 322/577 (55.81%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
L + +RPHQ +GV F++ECV G R G+I+AD MGLGKT+Q I LI +L Q P + + I++ ++VCPSSLV NW NE KW+G +I P + G D + F + + +LI+SYE + E L S L++CDE HRLK+ N+T+ A+ SL RR+L++GTP+QND+ E+F+LV F N G+LG +E F++RF PI R+ AS ++G E L + ++RRT + + YLP K E ++ C TP+Q +LYK+ ++ +DL ++ +L+ I L+KLCN P L+ +++E N + + S+ + K+ L++ ILA++ R + +K+VLVS++TQTLDL EKLC+ R+DG+ R +IV FN S E + +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++TGT+EE + QRQ K+ + S + + FS EL+ +F + ++ TH C C N
Sbjct: 150 LGKVLRPHQREGVKFLWECVTGRRISGSHGSIMADEMGLGKTLQCITLIWTLLRQSP-DAKPEIEKAVVVCPSSLVKNWYNEVSKWLGGRIQPLAIDGGSKEEIDKKLSGFMNQHGMRVPSPILIISYETFRLHAEVLHRGSVGLVICDEGHRLKNSENQTYQALNSLNTVRRVLISGTPIQNDLLEYFSLVHFVNAGILGTAQE-FKKRFEIPILKGRDADASAADRQKGEEKLKELIGVVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQSELYKLFLKQAKPAEDLNE---GKISVSSLSSITSLKKLCNHPSLIYEKCVEEEEGFQGALNLFPSGYSTKSVEPQLSGKMLVLDY-------ILAVT---------------------RSTSSDKVVLVSNYTQTLDLFEKLCRTRRYLYVRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCFIYRLLSTGTIEEKIFQRQTHKK--ALSSCVVDEEQDVERHFSIGELKELFILNENTTSD----THDKFKCRRCVN 687
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Xenopus
Match: rad54l (RAD54 like [Source:NCBI gene;Acc:407922]) HSP 1 Score: 355.14 bits (910), Expect = 4.403e-108 Identity = 217/577 (37.61%), Postives = 322/577 (55.81%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
L + +RPHQ +GV F++ECV G R G+I+AD MGLGKT+Q I LI +L Q P + + I++ ++VCPSSLV NW NE KW+G +I P + G D + F + + +LI+SYE + E L S L++CDE HRLK+ N+T+ A+ SL RR+L++GTP+QND+ E+F+LV F N G+LG +E F++RF PI R+ AS ++G E L + ++RRT + + YLP K E ++ C TP+Q +LYK+ ++ +DL ++ +L+ I L+KLCN P L+ +++E N + + S+ + K+ L++ ILA++ R + +K+VLVS++TQTLDL EKLC+ R+DG+ R +IV FN S E + +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++TGT+EE + QRQ K+ + S + + FS EL+ +F + ++ TH C C N
Sbjct: 147 LGKVLRPHQREGVKFLWECVTGRRISGSHGSIMADEMGLGKTLQCITLIWTLLRQSP-DAKPEIEKAVVVCPSSLVKNWYNEVSKWLGGRIQPLAIDGGSKEEIDKKLSGFMNQHGMRVPSPILIISYETFRLHAEVLHRGSVGLVICDEGHRLKNSENQTYQALNSLNTVRRVLISGTPIQNDLLEYFSLVHFVNAGILGTAQE-FKKRFEIPILKGRDADASAADRQKGEEKLKELIGVVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQSELYKLFLKQAKPAEDLNE---GKISVSSLSSITSLKKLCNHPSLIYEKCVEEEEGFQGALNLFPSGYSTKSVEPQLSGKMLVLDY-------ILAVT---------------------RSTSSDKVVLVSNYTQTLDLFEKLCRTRRYLYVRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCFIYRLLSTGTIEEKIFQRQTHKK--ALSSCVVDEEQDVERHFSIGELKELFILNENTTSD----THDKFKCRRCVN 684
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Xenopus
Match: rad54b (RAD54 homolog B [Source:NCBI gene;Acc:100158622]) HSP 1 Score: 345.51 bits (885), Expect = 1.614e-103 Identity = 219/558 (39.25%), Postives = 312/558 (55.91%), Query Frame = 1
Query: 397 MRRTAAPSKILDNNKLRKIF---------------------NYAQTNIPKIQSQNCNKETI-------VASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVN-REFKPVLLQTTVSSSTD-----LGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYV 1938
MRR+AAPS++ N + F + TNI + N + I +SS KY+SV + K SKKKHK W+GD + + L EGK++G + + LEEG + IGGK +E++S + SP G S T P + S+ + + F L +S + L + +P+ MP+PT H + +N PI DV+ DP L +RPHQ +G++F+YECV G R + GAILAD MGLGKT+Q I+LI ++ QGPY + +I++ LIV P SLV NW+ EF+KW+GT+ I F V D +E+F +S SVLI+SYEMLLR +E +Q L FD+++CDE HRLK+ S KT A+ SL +RI+L+GTP+QND+ EFF L++F NP LG + ++R+ F PI +REP A+ + G E + L RLT FILRRT+ V +LP K E I+FC P+ Q LY+ L+ ++++ L +G + L CI L+KLCN P LL R +
Sbjct: 1 MRRSAAPSQLSGNPAKKPRFIPPGKVNAACPDTETKHSITDSTVSTNICFLIPTNIHAYKINTLSKSPESSSFAKYFSVVWCKASKKKHKKWEGDAVLIAKGRAVTLKDMEGKDIGKGTGYKIKDLESLEEGHTLMIGGKEIEVMS-IMSPEDYNSGRCFHSVVTSPASTPSESIQMKPFTNPLRNDRKGASKENMFKELQNIKPRHDPCAPNAFVMPKPTQHHQWAYNKTGLPIVDVVVDPYLAVHLRPHQKEGILFLYECVMGMRVNERFGAILADEMGLGKTLQCISLIWTLIRQGPYGGKPVIKKALIVTPGSLVKNWRKEFQKWLGTERIRVFAVDQDHKVEEFMKSPLYSVLIISYEMLLRCLEQIQSLDFDVVICDEGHRLKNTSIKTTSALASLTCSKRIILSGTPVQNDLQEFFALIEFVNPAALG-SLSTYRKIFEEPIIRSREPTATTEEKNLGEERAAELARLTGLFILRRTQEVINKFLPPKIESIVFCRPSQFQLDLYRKLLNSRTVKSCLLG---SGESSPHLVCIGALKKLCNHPFLLFRTI 553 HSP 2 Score: 184.111 bits (466), Expect = 2.816e-47 Identity = 110/254 (43.31%), Postives = 149/254 (58.66%), Query Frame = 1
Query: 2185 FTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNNAE 2943
+TQTL++L+ LC + R+DG TP R IV FN + S + LLS KAGG GLNLIGA+ +ILYDLDWNPA D QAMAR+WRDGQ+ V +YRL+TTG++EE + QRQ++KQ LS ++VDL+ ++ FS +ELRN+FT H D+ C TH LL CDC + + P I+ C+LG Q+Q N S+S L W H+ G+ D + + +S VF T N +
Sbjct: 589 YTQTLNILQDLCNQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSTDFIFLLSSKAGGVGLNLIGASHLILYDLDWNPANDIQAMARVWRDGQRHTVHIYRLLTTGSLEEKIYQRQISKQGLSGAVVDLTKKSEHIR-FSLDELRNLFTLHEDT----DCVTHDLLQCDC------TITNCHSDGSPQKPLIHRSCQLGLHQDQLNK--NFSMSELMQWKHFSGQ----QNTEDPFLQMGKEHISFVFQNTTNKQQ 825
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Mouse
Match: Rad54b (RAD54 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:3605986]) HSP 1 Score: 528.094 bits (1359), Expect = 4.046e-172 Identity = 336/796 (42.21%), Postives = 463/796 (58.17%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVI-LEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNR----EFKPVLLQTTVSSSTDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGE 2850
ASS +KY+SV + K SKKKHK W+GD + + L EGK++G + + +EEG + IGGK +EIL + S F + G S P S+ + FK V Q+T + P+ + MPRP +H N C PI DV+ DP LV +RPHQ DG+IF+YECV G RA GAILAD MGLGKT+Q I+LI + QGPY + +I++ LIV P SLV NW+ EF+KW+G++ I F V D +E+F S +SVLI+SYEMLLR+++ ++ + F L++CDE HRLK+ S KT A+ SL ++ ++LTGTP+QND+ EFF LV F NPG+LG + S+R+ + PI +REP +S + E G + L RLT FILRRT+ V YLP K E ++FC P +Q +LY+ L+ +S++ L+ N L CI L+KLCN P LL V KE S+ +N E+ L+ L+F SGKL V ++L L+ EK++LVS++ QTL++LE++CK A R+DG TP + R IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ LS ++VDL+ S ++ FS EEL+N+FT H S C TH LL+C+C G E A P+ SR C+ G Q+ + +P S+S L W H+ G+
Sbjct: 100 ASSLLKYFSVVWCKASKKKHKKWEGDAILIVRGRSFTLKDLEGKDIGRGIGYKFKDLENVEEGQTLIIGGKEIEILGTISSDDFNS-GKCFQHGSGSPAVPSSQAARKCFSNPFKSVC-QSTQAQGKRWNDCRPRHNPCTPNALVMPRPDENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIFLYECVMGMRAVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDQDHKVEEFINSTFHSVLIISYEMLLRSLDQIKTIPFGLLICDEGHRLKNSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILG-SLSSYRKIYEEPIIISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLRSQSVRFCLQGLLENSA---HLICIGALKKLCNHPCLLFSSVKGKEFSSSCEEN--EERNLCQGLLSVFPAGYNPLQFSEEE-----------------SGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHIQ-FSVEELKNLFTLHESSH----CVTHDLLDCECT-GEKGHTED--ASEGPVASR---QCQFGPQKSDALRPL---SMSQLKQWKHFSGD 856
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Mouse
Match: Rad54l (RAD54 like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:894697]) HSP 1 Score: 355.91 bits (912), Expect = 2.449e-108 Identity = 228/606 (37.62%), Postives = 335/606 (55.28%), Query Frame = 1
Query: 919 PRPTASHN-FKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
P P ++H+ K + + P+ V+ DP L + +RPHQ +GV F++ECV R G I+AD MGLGKT+Q I L+ +L Q P E + I++ ++V PSSLV NW NE EKW+G +I P + G D +E F + + +LI+SYE +V L+ + L++CDE HRLK+ N+T+ A++SL RR+L++GTP+QND+ E+F+LV F N G+LG E F++ F PI +R+ AS + G E L + ++RRT + + YLP K E ++ C TP+Q +LYK + +++L + + +++ ++ L+KLCN P L+ D C E ED FE T K + LSGK+ V +L R ++ +K+VLVS++TQTLDL EKLC+ R+DG+ R ++V FN S + V +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++ GT+EE + QRQ K+ + S + + FS EL+ +FT S TH L+C C N
Sbjct: 123 PPPLSAHDQLKLDKEKLPVH-VVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSP-ECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE-FKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELREGKMSVSSLSSIT---SLKKLCNHPALI-------------YDKCVAE--------ED--------GFEG-TLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKK--ALSSCVVDEEQDVERHFSLGELKELFTLDEASLSD----THDRLHCRRCVN 686
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Mouse
Match: Rad54l (RAD54 like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:894697]) HSP 1 Score: 355.91 bits (912), Expect = 2.449e-108 Identity = 228/606 (37.62%), Postives = 335/606 (55.28%), Query Frame = 1
Query: 919 PRPTASHN-FKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
P P ++H+ K + + P+ V+ DP L + +RPHQ +GV F++ECV R G I+AD MGLGKT+Q I L+ +L Q P E + I++ ++V PSSLV NW NE EKW+G +I P + G D +E F + + +LI+SYE +V L+ + L++CDE HRLK+ N+T+ A++SL RR+L++GTP+QND+ E+F+LV F N G+LG E F++ F PI +R+ AS + G E L + ++RRT + + YLP K E ++ C TP+Q +LYK + +++L + + +++ ++ L+KLCN P L+ D C E ED FE T K + LSGK+ V +L R ++ +K+VLVS++TQTLDL EKLC+ R+DG+ R ++V FN S + V +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK +YRL++ GT+EE + QRQ K+ + S + + FS EL+ +FT S TH L+C C N
Sbjct: 123 PPPLSAHDQLKLDKEKLPVH-VVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSP-ECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHE-FKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELREGKMSVSSLSSIT---SLKKLCNHPALI-------------YDKCVAE--------ED--------GFEG-TLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKK--ALSSCVVDEEQDVERHFSLGELKELFTLDEASLSD----THDRLHCRRCVN 686
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Mouse
Match: Ercc6l (excision repair cross-complementing rodent repair deficiency complementation group 6 like [Source:MGI Symbol;Acc:MGI:2654144]) HSP 1 Score: 243.432 bits (620), Expect = 1.079e-65 Identity = 183/582 (31.44%), Postives = 288/582 (49.48%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWI-GTQIIPFCVSGDVSIEKFTQSL-----KNSVLILSYEMLLRNVEFL-----QGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTE------------------------IVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL---SGKLWVTAQMLMRLKN-GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSAL-RMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFT 2622
L ++ HQ +G+ F+Y R G ILAD MGLGKTVQ IA +S + + +L+ L++ P++L+ W NEF KW G ++ F S S + T+SL +N V+I +Y+MLL N + L Q +D ++ DEAH++K S K+ + ++ R+LLTGTP+QN++ E ++L FA G L ++F+ + +PI ARE A+ G + S L + + + LRRT+ I + L K++ I++ P+Q+++Y+ V ++ E LA + +L+KLC+ P LL N T + E ++ ED+ N+ S++ L D L SGK+ +L RL++ G + ++ S + L+++E+L KN RIDG+ R + + F + V LL+ + GG GL L A R++++D WNPATDAQA+ R++R GQK V VYRLIT GTVEE + +RQV K S K+ F+K+EL+ +FT
Sbjct: 93 LYEKLFEHQKEGIAFLYSLYKDGR----KGGILADDMGLGKTVQIIAFLSGMFDA------SLVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGS---SKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRTKEEVQTKKADNPEARLGEKNPAGEAICDMFSLARKNDLIVWIRLLPLQEEIYRKFVSLDHIK------ELLMETRSPLAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQDENEQ-----EDV----SNMN------------SIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKD--SLIRQTTGEKKNPFRYFTKQELKELFT 632
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Mouse
Match: Ercc6l2 (excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 [Source:MGI Symbol;Acc:MGI:1923501]) HSP 1 Score: 232.261 bits (591), Expect = 3.703e-64 Identity = 174/553 (31.46%), Postives = 275/553 (49.73%), Query Frame = 1
Query: 1003 RRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQ-GPYEN------------------ETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG-DVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVE---------------CKSLQKDLESEEFNGTAIDA-----LACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRL-KNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQ 2538
R +R +Q +G F+Y G G IL D MGLGKT+Q I+ ++ +L++ G E+ T + LIV P S++ NWK+E + W ++ S D + + Q K + + +YE L +E L L + I+ DEAHR+K+ + +++++ K RI LTGT LQN+M E + ++ +A PG+LG ++ F+++F +P+ + A+ + + G +A L + + LRRT+ + LP K++ +++C T QK +Y+ ++E C S QK + + D L+ + +L+K+ N LL K + C S D +K ++ FE L D SGK+ V Q+L K +K++L S T+ LD+L++ C + +R+DGST S R++IV +FN + L+S AGG GLN +GAN +IL+D WNPA D QA+ R +R GQ V V RLI+ GTVEE + RQV KQQ
Sbjct: 120 RYLRDYQREGAQFLYRHYI-----EGRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGSKKDNELLRLKQR-KCEIALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLG-SRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSYLTVLQKVANHVALLQAASTSKHQETVIKRIC----DRVFSRFPDFVQKSKDAAFET-------------LSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQ 648
BLAST of DNA repair and recombination protein RAD54B vs. UniProt/SwissProt
Match: sp|Q6PFE3|RA54B_MOUSE (DNA repair and recombination protein RAD54B OS=Mus musculus OX=10090 GN=Rad54b PE=2 SV=1) HSP 1 Score: 528.094 bits (1359), Expect = 2.830e-171 Identity = 336/796 (42.21%), Postives = 463/796 (58.17%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVI-LEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNR----EFKPVLLQTTVSSSTDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG-QRQNQQKPFCNTSLSHLNSWTHWVGE 2850
ASS +KY+SV + K SKKKHK W+GD + + L EGK++G + + +EEG + IGGK +EIL + S F + G S P S+ + FK V Q+T + P+ + MPRP +H N C PI DV+ DP LV +RPHQ DG+IF+YECV G RA GAILAD MGLGKT+Q I+LI + QGPY + +I++ LIV P SLV NW+ EF+KW+G++ I F V D +E+F S +SVLI+SYEMLLR+++ ++ + F L++CDE HRLK+ S KT A+ SL ++ ++LTGTP+QND+ EFF LV F NPG+LG + S+R+ + PI +REP +S + E G + L RLT FILRRT+ V YLP K E ++FC P +Q +LY+ L+ +S++ L+ N L CI L+KLCN P LL V KE S+ +N E+ L+ L+F SGKL V ++L L+ EK++LVS++ QTL++LE++CK A R+DG TP + R IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ LS ++VDL+ S ++ FS EEL+N+FT H S C TH LL+C+C G E A P+ SR C+ G Q+ + +P S+S L W H+ G+
Sbjct: 100 ASSLLKYFSVVWCKASKKKHKKWEGDAILIVRGRSFTLKDLEGKDIGRGIGYKFKDLENVEEGQTLIIGGKEIEILGTISSDDFNS-GKCFQHGSGSPAVPSSQAARKCFSNPFKSVC-QSTQAQGKRWNDCRPRHNPCTPNALVMPRPDENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIFLYECVMGMRAVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWRKEFQKWLGSERIKIFTVDQDHKVEEFINSTFHSVLIISYEMLLRSLDQIKTIPFGLLICDEGHRLKNSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILG-SLSSYRKIYEEPIIISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIELYRKLLRSQSVRFCLQGLLENSA---HLICIGALKKLCNHPCLLFSSVKGKEFSSSCEEN--EERNLCQGLLSVFPAGYNPLQFSEEE-----------------SGKLQVLVKLLAVIHELRPTEKVILVSNYRQTLNVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHIQ-FSVEELKNLFTLHESSH----CVTHDLLDCECT-GEKGHTED--ASEGPVASR---QCQFGPQKSDALRPL---SMSQLKQWKHFSGD 856
BLAST of DNA repair and recombination protein RAD54B vs. UniProt/SwissProt
Match: sp|Q9Y620|RA54B_HUMAN (DNA repair and recombination protein RAD54B OS=Homo sapiens OX=9606 GN=RAD54B PE=1 SV=1) HSP 1 Score: 519.235 bits (1336), Expect = 1.358e-167 Identity = 328/799 (41.05%), Postives = 473/799 (59.20%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSS-----TDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG---QRQNQQKPFCNTSLSHLNSWTHWVGE 2850
+ S VKY+SV + KPSKKKHK W+GD + + L + EGK++G + ++ +EEG + I GK +E++ + F + L + + S+ + F SS D + +P+ + MPRP +H + N +C P+ DV+ DP LV +RPHQ +G+IF+YECV G R + GAILAD MGLGKT+Q I+LI + QGPY + +I++ LIV P SLV NWK EF+KW+G++ I F V D +E+F +S+ SVLI+SYEMLLR+++ ++ + FDL++CDE HRLK+ + KT A+ SL ++RI+LTGTP+QND+ EFF L+ F NPG+LG + S+R+ + PI +REP AS + E G + L LT FILRRT+ + YLP K E ++FC P +Q +LY+ L+ + ++ L+ N L CI L+KLCN P LL + +KE ST +K E SL + + L + + +L E SGKL V +++L L+ EK+VLVS++TQTL++L+++CK A R+DG TP + R +IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ L ++VDL+ + ++ FS EEL+N+FT H S C TH LL+C+C V ++ + I SR C+LG Q+ N KP S+S L W H+ G+
Sbjct: 119 SDSLVKYFSVVWCKPSKKKHKKWEGDAVLIVKGKSFILKNLEGKDIGRGIGYKFKELEKIEEGQTLMICGKEIEVMGVISPDDFSSGRCFQLGGGSTAISHSSQVARKCFSNPFKSVCKPSSKENRQNDFQNCKPRHDPYTPNSLVMPRPDKNHQWVFNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILG-SLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSP---HLICIGALKKLCNHPCLLFNSIKEKECSST------CDKNEEKSLYKGL------LSVFPADYNPLLFTEKE-------SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVEELKNLFTLHESS----DCVTHDLLDCECT---GEEVHTGDSLEKFIVSR---DCQLGPHHQKSNSLKPL---SMSQLKQWKHFSGD 880
BLAST of DNA repair and recombination protein RAD54B vs. UniProt/SwissProt
Match: sp|Q9DG67|RA54B_CHICK (DNA repair and recombination protein RAD54B OS=Gallus gallus OX=9031 GN=RAD54B PE=2 SV=1) HSP 1 Score: 509.605 bits (1311), Expect = 1.001e-163 Identity = 338/831 (40.67%), Postives = 490/831 (58.97%), Query Frame = 1
Query: 532 VKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNV---VLSSSTVPTTDLSKYVNREF-KPVLLQTTVSSSTDL------------GSDEPQISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDK--ENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQ---NQQKPFCNTSLSHLNSWTHWVGEAE-ISDKCRDSLILESVKMVSCVFLRTVNNA 2940
KY+SV + K SKKKHK W+GD + + L EGK++G ++ LEEG + IGGK +E++ + + F + + + TVPT L + ++F KP+ S+ ++ +D + MPRP ASH N P+ DV+ DP + +RPHQ +G++F+YECV G R GAILAD MGLGKT+Q I+L+ +L QG Y + +++R LIV P SLV NWK EF+KW+G++ I F V D +E+F S SV+I+SYEMLLR+++ +Q + F+L++CDE HRLK+ S KT A+ +L +RRI+LTGTP+QND+ EF+ L++F NPGVLG + ++R+ + PI +REP A+ + + G + + L RLT FILRRT+ V +LP K E IIFC PT +Q +LY+ L+ + + L+ N L CI L+KLCN P LL + + +K + +S E ++E SL E + ++ + T+ EI SGKL V ++L L + E++VLVS++TQTL++L + CK + R+DG+TP + R +IV FN + S + LLS KAGG GLNL+GA+ +ILYD+DWNPATD QAMAR+WRDGQK V +YRL+TTGT+EE + QRQ++KQ LS ++VDLS + +++ FS EELRN+FT H +S+ C TH LL CDC N + Q+ + +P SR C+L Q Q N +KP S+S L W H+ G+ + + D LE +K + V NA
Sbjct: 128 TKYFSVMWCKASKKKHKKWEGDAILITKGKSVILKDMEGKDIGRGTGYKSKELDSLEEGQTLMIGGKEIEVMGVISADDFSSGRCFQAGIATHDTVPTA-LPQTTMKQFCKPIKSACQPSTKENILLNPQSCKPRHNPNDTNSLVMPRPNASHQCMFNKAGLPVVDVVVDPYIANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVFTVDQDHKVEEFISSPLYSVMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLG-SLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCLQGRLENSP---HLICIGALKKLCNHPCLLFKALKEKCCDPKSDE----HVES----SLYEGLTDVFPQ-DYTSDTFSEI------------DSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIH-FSVEELRNLFTLHENSS----CVTHDLLECDCMGNKD---HQNPSSKKPSVSRC---CQLRQDQGKHNSKKPL---SMSQLMQWKHFSGQHQALPDP-----FLERIKENVSFIFQNVTNA 913
BLAST of DNA repair and recombination protein RAD54B vs. UniProt/SwissProt
Match: sp|P41410|RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp54 PE=1 SV=2) HSP 1 Score: 390.578 bits (1002), Expect = 1.915e-119 Identity = 230/591 (38.92%), Postives = 328/591 (55.50%), Query Frame = 1
Query: 979 VIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQ-IIPFCVSGDVSIEKFTQSLKN-----------SVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESL----SLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLK--NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
V+ DP+L R +RPHQI+GV F+Y+CV G G I+AD MGLGKT+Q IAL+ +L Q P + I++ +I CPSSLV NW NE KW+G I PF + G S ++ +L+ VLI SYE L VE L +++CDE HRLK+ + TF A++ L ++RR++L+GTP+QND+ E+F+L+ FANPG+LG +E FR+ + PI R+ + + E G L ++ FI+RRT + + YLP K E+++FC + Q LYK + + K L GT L I +L+K+CN P LL N + +L+ C E+L + ++R + +N+ D LSGK+ V +ML ++K +K+VL+S++T TLDL E+LC+ R+DG+ R R+V FN V LLS KAGG G+NLIGANR+IL+D DWNPA D QA+AR+WRDGQK VYR I TGT+EE + QRQ KQ S + ++ FS + LR +F + D + C TH+ C C +
Sbjct: 254 VVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQE-FRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILR-----GTGSQPLKAIGLLKKICNHPDLL--------NLTEDLEGC-----EALFPPGFIPRELRGRDRNI-------------------DSSLSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQS--LSSCVVDEAQDVERHFSLDNLRQLFQLN-DHTV---CETHETYKCKRCRD 800
BLAST of DNA repair and recombination protein RAD54B vs. UniProt/SwissProt
Match: sp|A4PBL4|RAD54_ORYSJ (DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD54 PE=1 SV=1) HSP 1 Score: 390.193 bits (1001), Expect = 6.743e-118 Identity = 256/658 (38.91%), Postives = 372/658 (56.53%), Query Frame = 1
Query: 988 DPRLVRRMRPHQIDGVIFMYECVAGFRAHNG-TGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIG--TQIIPFCVS--GDV--SIEKFTQSLKN-SVLILSYEML-LRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML--MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXX-XXXXXXXXXXXNTFSKEELRNIFTFH--IDSAIPFGCWTHQLLNCDCCENPNGAV-------EQSVAVNEPIGSRINDYCELG---------QRQN-QQKPFCNTSLSHLNSWTHWVGEAEISD 2865
D LVR +RPHQ +GV FM++CV+G +G +G ILAD MGLGKT+Q+I L+ +L QG ++ + +++R ++V P+SLV NW++E KW+ Q++ C S DV IE F + L VLI+SYE + + +F + S DL++CDEAHRLK+ T A+ +L KRRILL+GTP+QND++EFF++V F NPGVLG + FR+ + PI REP AS + G E S L FILRRT + + +LP K ++ C T +Q LY + K++++ L SE + + LA I L+KLCN P L+ + + + D+C L + +W M VE LSGK+ V A++L +RLK +++VLVS++TQTLDL +LC+ R+DG+T R ++V+ FN S E V LLS KAGG GLNL+G NR+IL+D DWNPA D QA AR+WRDGQK RV +YR ++TGT+EE + QRQ++K+ L + + K ++ S E+LR++FTFH I S I H+ L C+ C N +G + + + +E S N Y ++G Q+ N + + S L SW H + + D
Sbjct: 228 DHLLVRYLRPHQREGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSITLLYTLLCQG-FDAKPMVKRAVVVTPTSLVSNWESEIIKWLKGRVQLLALCESTRADVLSGIESFLKPLSRLQVLIVSYETFRMHSSKFERPGSCDLLICDEAHRLKNDQTLTNKALAALPCKRRILLSGTPMQNDLEEFFSMVNFTNPGVLG-DATYFRRYYEAPIICGREPTASAEEKNLGSERSAELSAKVNLFILRRTNALLSNHLPPKIVEVVCCKLTALQTALYNHFIHSKNVKR-LISEGTKQSKV--LAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPEL------------FSGRSGSWTGGGGMWVE------LSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLVGGNRLILFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQADGKMQGSSLSTEDLRDLFTFHEQIRSEI------HENLKCNRC-NKDGCMVLDGSKFDSAATEHEASNSGENSYIDIGGFGAISGCVQKMNSSNQQIGSPSEEDLGSWGHHSDPSTVPD 855
BLAST of DNA repair and recombination protein RAD54B vs. TrEMBL
Match: C3Z5F3 (Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_202887 PE=4 SV=1) HSP 1 Score: 547.354 bits (1409), Expect = 1.894e-177 Identity = 336/833 (40.34%), Postives = 476/833 (57.14%), Query Frame = 1
Query: 532 VKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELG-SSMRSALSKVILEEGSSFHIGGKYVEI---LSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLL--QTTVSSSTDLGSDEPQ-------------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG---EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNC-----DCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNNAE 2943
+YY+V + K S +KHK W+GD + + ++L+ EGK++G +S A + EG + +GGK VEI +S D S + ++ SSS P + + F + Q + GS PQ + MPRP+ +H +K+NP QP+ DV+ DP L R +RPHQ DG+IF+Y CV G R H G GAILAD+MGLGKT+Q I +I +L QGPY + ++ R LIV P SLV NW EF+KW+G + + V D +++F +S V+I+SYEML+R V ++ ++FDLIVCDE HRLK+ + KT ++ L +RRI+LTGTP+QND+ E ++V F NPGVLG +FR+ + PI + +PGA+ G + L RLT F LRRTE VN YLP K E ++FC PTP+Q +Y+ L+ + L+ L S ++ L CI L+KLCNDP L+ Y KE D + + S+ +D+ NS+ E SGKL V A +L L + E++V+VS++TQTLD+++ + R+DGSTP+ R +IV FN C++ V LLS KAGG GLNLIGA+R++LYD+DWNPA D QAMAR+WRDGQ V +YRLITTGT+EE + QRQ++KQ LS ++VD SS FS E+L+++FT H D+ TH LL+C CC P Q+ AV+ P C+LGQ Q+ N S++ L WTH+ G E D +D +L S + +S VF+ N+++
Sbjct: 1 ARYYNVMWCKVSGRKHKRWEGDAVLVVYKRSVELLDTEGKKIGGASGYKATELSEMTEGQTLKVGGKEVEIYDEISLEDWNSGKCFQSIASSSSPDPAPTKVQPKPKPFTNPMKDKQAATQRKSAGGSGAPQTVAPRFDPTAEGVLVMPRPSPAHQWKYNPAGQPLVDVVVDPHLSRHLRPHQRDGIIFLYLCVMGMRDHPGLGAILADSMGLGKTLQCITMIWTLLKQGPYGGKPVLHRILIVTPGSLVKNWVKEFKKWLGNERCKVYAVGQDSRVDEFARSPLYPVMIISYEMLVRYVRDIEKINFDLIVCDEGHRLKNTNIKTTSSISGLSARRRIVLTGTPIQNDLQELHSIVDFCNPGVLG-PITAFRKVYEEPIVRSHQPGATEAEKTLGATRAEELSRLTGQFTLRRTEDVNNKYLPPKVEAVVFCRPTPLQLDIYRKLLCSRVLKSFLYSNRPTDGSLH-LMCISALKKLCNDPCLI--YTAAKEGE----DELFGFDQGEESIYKDVLSLFPRGYDPNSSSPE-------------YSGKLQVLADLLGSLYSEGPRERIVVVSNYTQTLDMVQ-----VRYGYLRLDGSTPTGKRQQIVERFNDKYCRDFVFLLSTKAGGVGLNLIGASRLVLYDIDWNPANDLQAMARVWRDGQPRVVHIYRLITTGTIEEKIYQRQISKQGLSGAVVDAKSSSKVQ--FSAEDLKDLFTLHEDT----DSVTHDLLDCAGKTSSCC--PGSDRPQTSAVSRP--------CQLGQPQSASLLKSNLSMAELLGWTHYRGPLEHQD-IQDYHLLSSAENISYVFVNETNSSQ 790
BLAST of DNA repair and recombination protein RAD54B vs. TrEMBL
Match: H0VJN1 (Uncharacterized protein OS=Cavia porcellus OX=10141 GN=Rad54b PE=4 SV=2) HSP 1 Score: 540.421 bits (1391), Expect = 2.351e-173 Identity = 337/824 (40.90%), Postives = 480/824 (58.25%), Query Frame = 1
Query: 532 VKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVI-LEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQ-------------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELG---QRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNN 2937
VKY+SV + K SKKKHK W+GD + + L EGK++G + ++ +EEG + IGGK +EI+ + S F + L + D S+ + F S+S + D+ Q + MPRP +H + N +C P+ DV+ DP +V +RPHQ +G+IF+YECV G R + GAILAD MGLGKT+Q I+LI + QGPY + +I+R LIV P SLV NW+ EF++W+G++ I F V D +E+F +S SVLI+SYEMLLR+++ ++ + FDL++CDE HRLK+ + KT A+ SL K+RI+LTGTP+QND+ EFF L+ F NPGVLG + S+R+ + PI +REP AS + E G + L RLT FILRRT+ V YLP K E ++FC P +Q +LYK L+ ++++ L+ N L CI L+KLCN P LL + KE +T + E SL E + L + + ++ E SGKL V +Q+L L+ EK+VLVS++TQTLD+L+ +CK + R+DG TP + R +IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ LS ++VDL+ + ++ FS EEL+N+FT H +S C TH LL+C+C G + + E ++ +C+LG Q+ N KP S+S L W H+ G+ D LE ++ F + V N
Sbjct: 113 VKYFSVVWSKASKKKHKKWEGDAILIVKGRSFILKDLEGKDIGKGIGYKFKELENIEEGQTLMIGGKEIEIMGIISSEDFNSGRCFQLGGGSPAVPDSSQTARKCFSKPFKSVCKSNSKENIQDDFQKYKPRHDPYTPNSLVMPRPDKNHQWMLNKNCFPVVDVVIDPHVVYHLRPHQKEGIIFLYECVMGMRMNGRYGAILADEMGLGKTLQCISLIWTLQCQGPYGGQPVIKRTLIVTPGSLVTNWRKEFKQWLGSERIKIFTVDQDHKVEEFMKSTFYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALFSLSCKKRIILTGTPIQNDLQEFFALIDFVNPGVLG-SLSSYRKIYEEPIIMSREPSASEEEKELGERRAAELTRLTGLFILRRTQEVINKYLPPKIENVLFCRPGTLQIELYKKLLNSQTVKFCLQGSVENSP---HLICIGALKKLCNHPCLLFNSIKGKECSTT------CDGNEEKSLYEGL------LNVFPTDYNPLVFTEKE-------SGKLQVLSQLLAVIHELRPTEKVVLVSNYTQTLDILQDICKRYGYSYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHAVHIYRLLTTGTIEEKIYQRQISKQALSGAVVDLTKTSEHIQ-FSVEELKNLFTLHENSH----CVTHDLLDCEC----TGEKDHTDDSLEKFA--VSRHCQLGLYQQKSNSLKPL---SMSQLKKWKHFSGD----DLNLTDPFLERIRENVSFFFQNVTN 895
BLAST of DNA repair and recombination protein RAD54B vs. TrEMBL
Match: L5M1F8 (DNA repair and recombination protein RAD54B OS=Myotis davidii OX=225400 GN=MDA_GLEAN10014514 PE=4 SV=1) HSP 1 Score: 535.798 bits (1379), Expect = 1.164e-172 Identity = 324/800 (40.50%), Postives = 471/800 (58.88%), Query Frame = 1
Query: 508 ETIVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETD--------GNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGS-DEP----QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGE 2850
+ + S VKY++V + K SKKKHKTW+GD + ++ + L EGK++G ++ +EEG + IGGK +EI+ ++ F + G + SSS S + +KP + +S + +P + MPRP +H + N +C P+ DV+ DP L +RPHQ +G+IF+YECV G R + GAILAD MGLGKT+Q I+L+ + QGPY + +I++ LIV P SLV NW+ EF+KW+G++ I F V D +E+F +S SVLI+SYEMLLR+++ ++ + FDL++CDE HRLK+ + KT A+ SL ++RI+LTGTP+QND+ EFF L+ F NPG+LG + SFR+ + PI +R+P AS + E G + L T F LRRT+ V YLP K E ++FC P +Q +LY+ L+ ++++ L+ N L CI L+KLCN P LL + +KE ST + E +ES SL E + L + + ++ E SGKL V ++L L+ +++VLVS++TQTL++L+++CK A R+DG TP + R +IV FN + S + LLS KAGG GLNLIG + +ILYD+DWNPATD QAM+R+WRDGQK V +YRL+TTGT+EE + QRQ++KQ LS ++VDL+ + ++ FS EEL+N+FT H S C TH LL+CDC G E + E N C+LG + S+S L W H+ G+
Sbjct: 21 QEVEPGSAVKYFTVVWCKASKKKHKTWEGDAVLIVNGKSLTLKDLEGKDIGRGTGYKFKELEKIEEGYTMMIGGKEIEIMGSISPDDFSSGRCFQLGGGGPAISSSSQAAKKCFSNPLKSVYKPSSKENRQNSFQNCKPRHDPCAPNSLVMPRPDKNHQWMFNKNCFPVVDVVIDPHLAYYLRPHQKEGLIFLYECVMGMRVNGRCGAILADEMGLGKTLQCISLLWTLQCQGPYGGKPIIKKTLIVTPGSLVNNWRREFQKWLGSERIKIFTVDQDHKVEEFIKSPLYSVLIISYEMLLRSLDQIKNIKFDLLICDEGHRLKNSAIKTTTALISLACEKRIILTGTPVQNDLQEFFALIDFVNPGILG-SLSSFRKIYEEPIIVSRQPSASKEDKELGERRAAELVCFTGLFFLRRTQEVINKYLPPKIENVVFCRPGALQLELYQKLLNSQAVRFCLQGSLENSP---HLICIGALKKLCNHPCLLFNSIKEKECSST-----WDEHEES-SLYEGL------LNVFPADYNPLMFTEKE-------SGKLQVLTKLLAVIHELRPTDRVVLVSNYTQTLNILQEVCKRHGYACTRLDGQTPVSQRQQIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLAKTSEHIQ-FSVEELKNLFTLHESSH----CVTHDLLDCDCA----GKREHTGDSLEKFPVSRN--CQLGPHHKKSDSLKPLSMSQLKQWKHFSGD 786
BLAST of DNA repair and recombination protein RAD54B vs. TrEMBL
Match: A0A0P4WBD0 (Uncharacterized protein OS=Scylla olivacea OX=85551 PE=4 SV=1) HSP 1 Score: 540.421 bits (1391), Expect = 1.203e-172 Identity = 331/798 (41.48%), Postives = 447/798 (56.02%), Query Frame = 1
Query: 520 ASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFET----DGNVVLSSSTVPTTDLSKYVNREFK------PVLLQTTVSSSTDLGSDEPQIS----MPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLG----DHLLSGKLWVTAQMLMRLKNG--EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDF-NRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQN--QQKPFCNTSLSHLNSWTH 2838
A S KYY+V + K S+KKHK W+GD + + + L EGKE+G L + LEEGS+ +GGK VEI + + + S+ G V ++ ++ L K + F+ P + + + ++ P + MPRP A H + HN + DV+ DP L ++RPHQ +GV+F+YECV GF G GAILAD MGLGKT+Q I LI +L QGPY +++R L+V PSSL NW+ EF+KW+G + + F V +E++T V+I+SYEM LRN E ++ + FDLI+CDEAHRLK+ + KT + SL KRRIL+TGTP+QND+ E F LV FANPGVLG SFR + PI A+++P E G + L R+T FILRRT+ + YLP K EY++ C P+ Q+ LY +V C+SL++ S E D L+ IL LRKLCN P LL + +E+ E K LS KEI L D SGKL V + ML L+ G EK+VLVS++T TLD+L LC + R+DGSTPSA R ++V F N+ S V LLS KAGG GLNL+GA+RI+LYD+DWNPATD QAMAR+WRDGQ +V +YRL+ TGT++E + QRQV KQ LS ++VD S+ FS EEL+++FT H D+A C TH LL C+C + EP C+LG N ++ L +W H
Sbjct: 166 APSETKYYAVVWCKLSRKKHKNWEGDAILIVKGRSVTLKDLEGKEIGRGSGYKLKDLGSLEEGSTLPVGGKEVEIQNVISAESYALGHCFQGEVTVTEKAESSSRLPKPKPKPFRLPTLGRPAGPACSSTEAENMPLFNPSLPDALVMPRPPAQHQWHHNSGRTSVVDVVVDPHLASQLRPHQQEGVVFLYECVMGFHLQTGCGAILADEMGLGKTLQCITLIWTLLKQGPYGRRPVVRRVLVVTPSSLTSNWRKEFKKWLGKERLGVFVVDQQNKVEQYTSQQHTPVMIISYEMFLRNSEVIEKIGFDLIICDEAHRLKNPAIKTTHLLASLPCKRRILVTGTPIQNDLQELFALVDFANPGVLG-TPSSFRHIYEEPIVASQQPNTPLTEKELGASRASQLNRITSLFILRRTQDIINRYLPPKAEYVVLCQPSETQQALYSEVVGCRSLRRCFTSLEPG----DHLSAILALRKLCNHPALL---AVSEES----------ENKNELS-------------------KEISTFMPSHLQAGVYDEADSGKLAVVSCMLWALREGGQEKIVLVSNYTTTLDMLASLCVRYNYPYLRLDGSTPSAKRQKLVDSFNNKCSTDFVFLLSAKAGGVGLNLVGASRILLYDIDWNPATDLQAMARVWRDGQHRKVHIYRLLVTGTLDEKMYQRQVRKQGLSGAVVDARDSERVH--FSTEELKDLFTVHWDTA----CLTHDLLECECDQQGGSGAPPQKTAQEP-----ERACQLGGAGNITIDAAHPTKTMDQLQNWYH 915
BLAST of DNA repair and recombination protein RAD54B vs. TrEMBL
Match: W5MVF2 (RAD54 homolog B OS=Lepisosteus oculatus OX=7918 PE=4 SV=1) HSP 1 Score: 539.265 bits (1388), Expect = 2.142e-172 Identity = 328/797 (41.15%), Postives = 461/797 (57.84%), Query Frame = 1
Query: 526 SNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSS--------TDLG---SDEP----QISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRT-EIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDC-CENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVG 2847
S +Y+SV + K SKKKHK W+GD + + L EGK++G S++ L EG S +GGK +E++ AV + F + + KP S S T+ G +P + MPRPT +H + N + DV+ DP L +RPHQ +GV+F+YECV G RA GAILAD MGLGKT+Q +AL+ +L QGPY +++R L+V P SLV NW EF+KW+G Q I F V D +E+F S +VLI+SYEMLLR+VE +Q + F LI+CDE HRLK+ S KT A+ SL +RRI+LTGTP+QND+ EF +++F NPG+LG + ++R+ + PI +R+P ++ + G E + L RLT FILRRT EI+N+ YLP K E+I+FC PTP+Q ++Y+ ++ C+ ++ L+ N L CI L+KLCN P LL + ++E+R+ +C + SL +E + S E L D SGKL V +L +L +++VLVS++TQTLD+L+ LC+ R+DG TP + R +IV FN R S V LLS KAGG GLNL+GA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTGT+EE + QRQ++KQ LS ++VDLS +++ +FS EELRN+FT H DS C TH LL C C + G + V +P+ R C+LG++ + S+S L W H+ G
Sbjct: 139 SAARYFSVVWCKASKKKHKRWEGDAVLVARGRSVVLKDLEGKDIGRGTGYKSSELESLAEGQSLMVGGKEIEVMGAVSAEDFSSGRCFHEGPAEAAAAPPVPARRPAQKPFAGPARKSGSGALQRAPETEAGCRPRHDPLAPGALVMPRPTLNHQWLFNKAGLQVVDVVVDPYLTAHLRPHQREGVVFLYECVMGMRAAGRHGAILADEMGLGKTLQCVALLWTLLRQGPYGGRAVLRRALVVTPGSLVRNWGAEFQKWLGGQRIGVFAVDQDHKVEEFVNSQIYAVLIISYEMLLRSVEQIQRVEFGLIICDEGHRLKNSSIKTSSALSSLSCERRIILTGTPVQNDLQEFHAIIEFVNPGILG-SSSAYRKVYEEPIVKSRQPSSTGEEKRLGAERAAELARLTGLFILRRTQEIINS-YLPPKLEWIVFCQPTPLQLEVYRNILSCRLVRSCLQGALENSP---HLVCIGALKKLCNHPGLLYATIREREDRAR--SDCADAAESSL--------------YEGLSGLFPEGYSSEGL-DASDSGKLMVLTDLLAAIRQLSPADRVVLVSNYTQTLDMLQDLCRRCGYRSTRLDGQTPVSQRQKIVDVFNSRYSSDFVFLLSSKAGGVGLNLVGASHLVLYDVDWNPANDIQAMARVWRDGQKRTVHIYRFLTTGTIEEKIYQRQISKQGLSGAVVDLSKRAAHI-SFSSEELRNLFTLHEDSE----CVTHDLLGCRCRSGDSAGGLAAEV---KPLMER---SCQLGRKSEKPSTQKYLSISELMQWKHYSG 902
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Cavefish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 497.278 bits (1279), Expect = 3.638e-161 Identity = 313/809 (38.69%), Postives = 457/809 (56.49%), Query Frame = 1
Query: 490 SQNCNKETIVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKV-ILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKY-VNREF-KPVLLQTTVSSSTDLGSDEPQ---------------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLES-EEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNR-ISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFC--NTSLSHLNSWTHWVG 2847
S NC+ ++ S +YYSV + K S +KHK W+GD + + L EG+++G S++ L EG + +GGK +E++ + + + ++ VP +++ V+R KP +T LG EP+ + MPRP+A+H + N P+ DV+ DP L +RPHQ +GV+F+YEC+ G R GAILAD MGLGKT+Q + ++ +L QGPY + +++R L+VCP SLV NW EF KW+G + I F V D ++ F S V+++SYEMLLR++E L+ L F L++CDE HRLK+ + KT A+ +L +RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + +LP + E+ +FC PT +Q QLY L+ +S++ + N + LACI L+KLCN P LL V K+ + L E + KL + E + D SGKL V +L + ++VLVS++TQTLDLL+ LC +L R+DG TP A R RIV FN S + LLS KAGG GLNL+GA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTGT+EE + QRQV+KQ LS ++VDL ++ +FS EELR++FTF +++ C TH LL+C C +G+ SV V E C+LG R N P ++S L W H+ G
Sbjct: 23 SLNCSVSCLICVS-AQYYSVVWCKASSRKHKRWEGDAVLVARGRSVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVGGKQIEVMGVISNEDYTKGRCFQDAAVDVPLEAVTRAPVSRPLAKPFSRPALKGGATKLGP-EPEGPVPKPRHDPNAPGALVMPRPSANHQWLCNKTGLPVVDVVVDPHLTNHLRPHQREGVVFLYECLMGMRFAGRCGAILADEMGLGKTLQCVCVLWTLLKQGPYGGQPVLKRGLVVCPGSLVKNWGAEFNKWLGRERIRVFTVDQDNRVQDFVSSPLCPVMVISYEMLLRSIEVLKKLDFSLVICDEGHRLKNSNIKTAGALTALACERRVILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPIIRSRQPTCTEEERFMGEERAAELARLTSVFTLRRTQEIINHFLPERLEWTVFCRPTELQVQLYNALLSTRSVRACISGYNTLNHSP--HLACINALKKLCNHPGLLYNTV----------------KESTDELYESLSVKL---------FPEAYSTGNFCTAD---SGKLLVLTDLLKAI----QVVLVSNYTQTLDLLQDLCTHLGYTWCRLDGQTPVAQRQRIVESFNSPYSSHFLFLLSSKAGGVGLNLVGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGTIEEKMYQRQVSKQGLSGTVVDLKKKAEHI-SFSAEELRDLFTFEANTS----CLTHDLLDCQCLG--DGSTPGSVTVAE------GRACQLGHRANSSSPCVPQRVTMSELMHWRHFSG 781
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Cavefish
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 407.142 bits (1045), Expect = 4.957e-128 Identity = 260/680 (38.24%), Postives = 385/680 (56.62%), Query Frame = 1
Query: 718 IGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKY-VNREF-KPVLLQTTVSSSTDLGSDEPQISMPRPTASHNFKHNPDCQPIR------------DVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQII------PFCVS-GDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLES-EEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKN---GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNR-ISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNC 2679
+GGK +E++ + + + ++ VP +++ V+R KP +T LG EP+ +P+P +H+P+ I+ ++ +P + + M C R GAILAD MGLGKT+Q + ++ +L QGPY + +++R L+VCP SLV NW EF KW+G + I C S GD ++ F S V+++SYEMLLR++E L+ L F L++CDE HRLK+ + KT A+ +L +RR++LTGTP+QND+ EF+++++F NPG+LG ++R+ + PI +R+P + + G E + L RLT F LRRT+ + +LP + E+ +FC PT +Q QLY L+ +S++ + N + LACI L+KLCN P LL Y K + ST+ E ESLS+ + E + D SGKL V +L +++ +K+VLVS++TQTLDLL+ LC +L R+DG TP A R RIV FN S + LLS KAGG GLNL+GA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YR +TTGT+EE + QRQV+KQ LS ++VDL ++ +FS EELR++FTF +++ C TH L +C
Sbjct: 2 VGGKQIEVMGVISNEDYTKGRCFQDAAVDVPLEAVTRAPVSRPLAKPFSRPALKGGATKLGP-EPEGPVPKP------RHDPNAPGIKLPLAILFLKLYVSIVLNPPMCQYM------------SCGCVCRFAGRCGAILADEMGLGKTLQCVCVLWTLLKQGPYGGQPVLKRGLVVCPGSLVKNWGAEFNKWLGRERIRVFTVDQVCGSEGDNRVQDFVSSPLCPVMVISYEMLLRSIEVLKKLDFSLVICDEGHRLKNSNIKTAGALTALACERRVILTGTPVQNDLQEFYSIIEFVNPGILG-TSAAYRKIYEEPIIRSRQPTCTEEERFMGEERAAELARLTSVFTLRRTQEIINHFLPERLEWTVFCRPTELQVQLYNALLSTRSVRACISGYNTLNHSP--HLACINALKKLCNHPGLL--YNTVKVSESTD------ELYESLSV---------------KLFPEAYSTGNFCTAD---SGKLLVLTDLLKAIQHVNRTDKVVLVSNYTQTLDLLQDLCTHLGYTWCRLDGQTPVAQRQRIVESFNSPYSSHFLFLLSSKAGGVGLNLVGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRFLTTGTIEEKMYQRQVSKQGLSGTVVDLKKKAEHI-SFSAEELRDLFTFEANTS----CLTHDLPHC 628
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Cavefish
Match: rad54l (RAD54 like [Source:NCBI gene;Acc:103036648]) HSP 1 Score: 352.058 bits (902), Expect = 4.559e-107 Identity = 216/578 (37.37%), Postives = 322/578 (55.71%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKN-----------SVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
L + +RPHQ +GV F++ECV G R + G I+AD MGLGKT+Q I L+ +L Q P + + I + ++V PSSLV NW NE KW+G ++ P + G S E+ + L N +LI+SYE + E L L++CDE HRLK+ N+T+ A+ ++ +RR+L++GTP+QND+ E+F+LV F N G+LG +E F++RF PI R+ AS++ G E L + ++RRT + + YLP K E ++ C TP+QK+LYK+ ++ K +ES + ++ +L+ I L+KLCN P L+ +D E + + + + + K+ L++ ILAM+ R +K+VLVS++TQTLDL EKLC+ R+DG+ R +IV FN S E + +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQ+ +YRL++TGT+EE +LQRQ K+ + S + + FS ELR +F + ++ TH C C N
Sbjct: 147 LSKVLRPHQREGVKFLWECVTGRRIPDSYGCIMADEMGLGKTLQCITLVWTLLRQSP-DFKPEIDKAIVVSPSSLVRNWYNEVAKWLGGRVQPVAIDGG-SKEEIDRKLVNFISQHGLRVPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYQALNAMNAQRRVLISGTPIQNDLLEYFSLVHFVNAGILGTAQE-FKKRFEIPILKGRDADASDKDRAVGEEKLKELISVVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQKELYKLFLK---QAKPVESLQQGKISVSSLSSITSLKKLCNHPSLIYEKCVDGEEGFAGAMDLFPPGYSTKGVEPQLSGKMLVLDY-------ILAMT---------------------RSTTSDKVVLVSNYTQTLDLFEKLCRTRKYLYVRLDGTMSIKKRAKIVERFNSPSNPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQRKTCYIYRLLSTGTIEEKILQRQAHKK--ALSSCVVDEEQDVERHFSLGELRELFALNEETLSD----THDRFRCRRCVN 684
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Cavefish
Match: ercc6l (excision repair cross-complementation group 6-like [Source:NCBI gene;Acc:100005291]) HSP 1 Score: 251.136 bits (640), Expect = 1.879e-68 Identity = 187/585 (31.97%), Postives = 288/585 (49.23%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWI-GTQIIPFCVSGDVSIEKFTQSL--KNSVLILSYEMLLRNVEFL-----QGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIV------------------------NTLYLPT---KDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL---SGKLWVTAQMLMRLKNGEKLVLVSHFTQT---LDLLEKLCKNLDIALQRIDGSTPSAL-RMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTF 2625
L ++ HQ +GV F+Y R G ILAD MGLGKT+Q I+ +S G Y+ E L L+V P+SL+ NW EF KW G ++ F + V + + + K V+I +Y+ML+ N E L Q +D ++ DEAH++K S KT + ++ + R+LLTGTP+QN++ E + L FA G L ++F+ + NPI ARE A+ G + S L L + + LRRT+ ++ +P+ K++ II+ + VQ+ +Y+ + ++ T LA + +L+KLC+ P LL + + L L + L + EN E A S+E + D L SGKL +L +LK + LV F+Q+ LD+++++ +N + L R+DG+ + R R ++ F V LL+ + GG G+ L ANR++++D WNPATDAQA+ R +R GQ V +YRLIT GTVEE + +RQV K S K+ FSK+EL+ +FT
Sbjct: 78 LYNKLYEHQKEGVAFLYSLHRDGR----RGGILADDMGLGKTIQVISFLS-----GMYDAE-LANHSLLVMPTSLIKNWVREFAKWTPGMRVKEFHGTSKVERNRNLERIQRKGGVIITTYQMLINNWEQLATYQHQEFRWDYVILDEAHKIKTSSTKTAKSAHAIPARNRVLLTGTPVQNNLREMWALFDFACQGALLGTAKTFKTEYENPITRAREKDATPGEKTLGLKISQNLMDLIRPYFLRRTKAEVQQKKQNAKGTRHEEEENKCPNAGDSAEMPSLTRKNDLIIWTYLSEVQEDIYQQFISLDHIKA------LMMTTRSPLAELTVLKKLCDHPRLLSARAVTQ-----------------LGLEQGAATDLAAEDNEN----ESAAGSIEHVSDETLLEESGKLRFLVSLLEQLKADQHRTLV--FSQSRKMLDIIDRVLRNRNFRLLRVDGTVTQLVERERRITLFQTDRRYSVFLLTTQVGGVGITLTAANRVVIFDPSWNPATDAQAVDRAYRIGQTENVVIYRLITCGTVEEKIYRRQVFKD--SLIRQTTGDKKNPFRYFSKQELKELFTL 621
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Cavefish
Match: atrxl (ATRX chromatin remodeler, like [Source:ZFIN;Acc:ZDB-GENE-030131-2019]) HSP 1 Score: 232.646 bits (592), Expect = 4.085e-62 Identity = 182/604 (30.13%), Postives = 292/604 (48.34%), Query Frame = 1
Query: 964 QPIRDVIFDPRLVRRMRPHQIDGVIFMY----ECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKW-IGTQIIPFCVSGDVSIEKF--------TQSLKNSVLILSYEM--LLRNVE-------------FLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENR---STELDNCYIEKKESLSLVEDIRKKLQNLEFENST--------------------------WKEILAMSVEKLGDHLLSGKLWVTAQML-MRLKNGEKLVLVSHFTQTLDLLEKLCKNL--------------------DIALQRIDGSTPSALRMRIVSDFNRISCK--EVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQ 2535
QP+ V D L+ +++PHQ GV FM+ E + + G+G ILA MGLGKT+Q IA + +L+ + +T L+VCP + VLNWK EF+KW G + V VS++ + K +V+I+SYEM +L N + LQ D++VCDE H L++ + F A+ S++ +RRI+LTGTPLQN++ E+ +V F +LG +E FR RF+NPI + ++ + + +L L + RR V T +LP K EY++ T +Q +LY+ ++ + + D S F I +L + P L ++K N+ T + EK + S D Q E+ +K+ ++ + ++ +H SGKL + ++L M + EK+++ S +LDL+E + D R+DGST + R + +FN+I K + L+S KAG G+NL+ ANR++++D WNP D Q++ R++R GQ+ V VYR + GT+E+ + +RQVAKQ
Sbjct: 919 QPLLQV--DTHLLSKLKPHQRVGVQFMWDSCCESITKVKESPGSGCILAHCMGLGKTLQVIAFLHTVLSSELVQLKT----ALVVCPLNTVLNWKAEFDKWQCGIKTRKLEVIELVSVKSALCRVEALSSWHQKVAVMIISYEMYRILTNGKKSKYAKHHQRLRTALQNPGPDIVVCDEGHILRNETTGIFKAMSSIRTRRRIVLTGTPLQNNLTEYHCMVNFIKENLLGSQRE-FRNRFINPIQNGQCADSTPSDVRLMKKLVHVLHELLAGCVQRRDYSVLTPFLPPKQEYVLSIRMTSLQCELYRHYLQNYTGEGDGVSRLFQDFQILSL--------IWTHPWCLQLSDLNKGNKVHAHTHTSSFSKEKTSTSSTKGDSVTNAQGHSVEDGKTIAHNFLSFFLSLSFFLVSNGPAAGWYKKFVSATDAEILEH--SGKLVLLMEILHMAEQLQEKVLVFSQSLVSLDLIESFLELANKAKRERKDSVYKGNRIWVRDTDYYRLDGSTSATARKKWAQEFNKIRNKRGRLFLISTKAGSLGINLVAANRVVVFDASWNPTYDIQSIFRVYRFGQRKPVYVYRFLAQGTMEQKIYERQVAKQ 1505
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Sea Lamprey
Match: rad54b (RAD54 homolog B [Source:ZFIN;Acc:ZDB-GENE-060810-50]) HSP 1 Score: 505.753 bits (1301), Expect = 2.413e-165 Identity = 321/805 (39.88%), Postives = 462/805 (57.39%), Query Frame = 1
Query: 526 SNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKEL----GSSMRSALSKVILEEGSSFHIGGKYVEILSAVDSPSFETD--------GNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG---EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFN-RISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNT-FSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENP---NGAVEQSVAVNEPIGSRINDYCELGQRQN----QQKPFCNTSLSHLNSWTHW 2841
S KYYSV +GK SKKKHK W+GD + S + L EGK++ G + R S L EG + I GK +E++ + + +SS P Y N F+ V T+ +P+ + MP+P+ +H +++N P+ DV+ DP LV +RPHQ +GV+F+YE V G + GAILAD MGLGKT+Q IAL+ +L QGPY N + + LIV P SLV NW EF KW+G + I F V + +E+F +S VLI+SYEM+LR ++ ++ + F L++CDE HRLK+ S KT A++SL KRRILLTGTP+QND+ EF+++V+F NPG+LG + +FR+ F PI + +P AS + + G + LQRLT F+LRRT+ +N YLP K E+++ C PTP+Q QLY+ L+ +++ L + + L CI L+KLCNDP LL + + K++ E D +SL + + ++ + ST K L SGKL V A++L + E++VLVS+ TQ LD+L + C + + R+DG+TP + R ++ +FN R S V LLS KAGG GLNL+GA+R++LYD+DWNPA D QAMAR+WRDGQ V +YR +TTGT+EE + QRQV+KQ LS S+VD +SS + + FS EELRN+FT H + C+TH LL C C + +GA ++S+ + C+LG+ N Q+ S++ L W H+
Sbjct: 1 SVTKYYSVMWGKASKKKHKKWEGDAVLITSGRVVNLKDMEGKDICKGTGYNKRELES---LSEGHTLVISGKEIEVMGLISCEDYSNGRCFQVSGASCDSAASSATPNKAARPYAN-PFRAVTGAPEKFRVTETKVYKPRFDPFAPNALVMPQPSPAHQWQNNAAGLPMGDVVVDPHLVVHLRPHQREGVVFLYEAVMGMSFNVFFGAILADEMGLGKTLQCIALVWTLLRQGPYGNRPSLHKVLIVTPGSLVRNWSREFNKWLGVERIRVFTVDQEHKVEEFMKSPIYPVLIISYEMVLRCIDAVRVIPFGLVICDEGHRLKNSSIKTASAIDSLPCKRRILLTGTPIQNDLQEFYSIVEFVNPGILG-SAAAFRKVFEEPIVQSHQPSASLEDKQLGETRAAELQRLTGLFVLRRTQEINQRYLPPKREFVVMCRPTPLQIQLYRRLLASPAVRSCLNRVTTDRSP--HLVCISALKKLCNDPCLLYKTLQKKQDSEEEAD---------VSLYDGLYEEFSLIYNPESTSK-------------LESGKLRVLARLLEAMHQKTPVERVVLVSNSTQMLDVLARCCSSWGYSWVRLDGTTPVSQRQHLLENFNSRFSTHSVFLLSSKAGGVGLNLVGASRLVLYDIDWNPANDMQAMARVWRDGQHKTVHIYRFLTTGTIEEKIYQRQVSKQGLSGSVVDAASSARSEHIRFSLEELRNLFTLHEGTC----CFTHDLLGCPCQGDGGILSGANKKSL---------VERTCQLGRETNTSSSAQRSTKALSMAELMEWHHF 763
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000008546.1 (pep scaffold:Pmarinus_7.0:GL478142:26283:34743:1 gene:ENSPMAG00000007719.1 transcript:ENSPMAT00000008546.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 353.214 bits (905), Expect = 3.539e-108 Identity = 207/536 (38.62%), Postives = 298/536 (55.60%), Query Frame = 1
Query: 919 PRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG------DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM--RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLIT 2487
P TA K + D QP+ V+ DP L + +RPHQ +GV F++ECV G R G I+AD MGLGKT+Q I L+ +L Q P + + I + ++V PSSLV NW NE KW+G ++ P + G D +E F + N +LI+SYE + E L L++CDE HRLK+ N+T+ A+ SL +RR+L++GTP+QND+ E+F+LV F N G+LG +E F+++F PI R+ A++ G E L + ++RRT + + YLP K E ++ C T +Q LYK+ + +L + + + +L+ I L+KLCN P L+ D C +E +E LE S + KL + LSGK+ V +L R +K+VLVS++TQTLDL E+LC+ R+DGS R ++V FN S E V +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQ+ +YRL++
Sbjct: 123 PEVTAHDLLKADKDTQPVH-VVVDPELCKVLRPHQREGVQFLWECVTGRRIPGSFGCIMADEMGLGKTLQCITLMWTLLRQSP-DAKPEIDKVMVVAPSSLVKNWFNEVAKWLGGRVTPLAIDGGSKGEIDKMLESFMAQHGLRIPNPILIISYETFRLHAEVLHRGRVGLVICDEGHRLKNAENQTYQALNSLNAQRRVLISGTPIQNDLLEYFSLVHFVNCGILGTAQE-FKKKFELPILKGRDADATDALKRRGEERLQELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTALQAGLYKLFLRQNKTASELSTAKNGTISASSLSSITQLKKLCNHPSLI-------------FDKC-VEGEEGFE---------GALELFPSGYN-------PKLLEPQLSGKMLVLDYILAVTRSTTSDKVVLVSNYTQTLDLFERLCRARSYLYVRLDGSMSIKKRAKVVDQFNNSSSPEFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQRKSCYIYRLVS 625
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Sea Lamprey
Match: ercc6l (excision repair cross-complementation group 6-like [Source:NCBI gene;Acc:100005291]) HSP 1 Score: 215.698 bits (548), Expect = 4.581e-59 Identity = 175/588 (29.76%), Postives = 278/588 (47.28%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWI-GTQIIPFCVSGDVSIEKFTQSLKN-SVLILSYEMLLRNVEFL---QGLSF--DLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTE------------------------IVNTLY-------LPT---KDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELD-NCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL---SGKLWVTAQMLMRLKN-GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGS-TPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIF 2619
L ++ HQ++GV ++Y R G ILAD MGLGKT+Q I+ +S + + +L L+V P++L+ W +EF+KW G I F + + + V+I SY++L+ N L QG F D ++ DE H++K S KT + ++ R++LTGTP+QN++ E + L F G L ++F+ + NPI AR+ A+ G + LQ L + LRRT+ T + +PT K++ I++ +PVQ+Q+Y+ +++ L+S L + +L+K+C P LL E +L N + ES L S W S++ + L SGKL +L RL+ G + ++ S + LD+++ + K+ + RIDG+ T R + V F + S V LL+ + GG GL L ANR+++ D WNPATDAQA+ R +R GQ V +YRL+T GT+EE + +RQ+ K+ S K+ FS++ELR +F
Sbjct: 75 LHNQLYSHQLEGVAWLYNLFKNKRK----GGILADDMGLGKTIQVISFLSGMFD------ASLFGHVLLVMPTTLMSIWISEFDKWAPGITIREFYGTKSERTRNLQKVQRTQGVVITSYQLLVNNWHELSTYQGQEFIWDAMILDEGHKIKTSSTKTAKSAHAIPAHFRMILTGTPVQNNLKEIWALFDFVCEGSLLGTSKTFKMEYENPITKARQKDATVGEKALGTRMAENLQELIGPYFLRRTKAEVQSKELHAKQLRDNKENDPTKCFSYTFFDARIQIEMPTLTRKNDLIVWVYLSPVQEQIYRDFQNLDDIKELLDSTR------SPLVALGILKKICVHPRLL------PERACAQLGLNQQFGRIESEGL--------------QSNW---FLSSIKNVPPKTLIEESGKLTFLIGLLERLRQEGHRTLVFSQSLKMLDIIDHILKHQGFKVMRIDGTITHITEREKRVQTFQKDSAFNVFLLTTQVGGVGLTLTAANRVVILDPSWNPATDAQAVDRAYRIGQTDNVIIYRLVTCGTMEEKIYRRQIFKE--SLIRQTTGDKKNPFRYFSQQELRELF 621
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Sea Lamprey
Match: ercc6l (excision repair cross-complementation group 6-like [Source:NCBI gene;Acc:100005291]) HSP 1 Score: 216.468 bits (550), Expect = 5.783e-59 Identity = 174/584 (29.79%), Postives = 279/584 (47.77%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWI-GTQIIPFCVSGDVSIEKFTQSLKN-SVLILSYEMLLRNVEFL---QGLSF--DLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTE---------------------IVNTL------YLPT---KDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNC-YIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL---SGKLWVTAQMLMRLKN-GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGS-TPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIF 2619
L ++ HQ++GV ++Y R G ILAD MGLGKT+Q I+ +S + + +L L+V P++L+ W +EF+KW G I F + + + V+I SY++L+ N L QG F D ++ DE H++K S KT + ++ R++LTGTP+QN++ E + L F G L ++F+ + NPI AR+ A+ G + LQ L + LRRT+ V L +PT K++ I++ +PVQ+Q+Y+ +++ L+S L + +L+K+C P R + ++ L C + + ES L S W S++ + L SGKL +L RL+ G + ++ S + LD+++ + K+ + RIDG+ T R + V F + S V LL+ + GG GL L ANR+++ D WNPATDAQA+ R +R GQ V +YRL+T GT+EE + +RQ+ K+ S K+ FS++ELR +F
Sbjct: 94 LHNQLYSHQLEGVAWLYNLFKNKRK----GGILADDMGLGKTIQVISFLSGMFD------ASLFGHVLLVMPTTLMSIWISEFDKWAPGITIREFYGTKSERTRNLQKVQRTQGVVITSYQLLVNNWHELSTYQGQEFIWDAMILDEGHKIKTSSTKTAKSAHAIPAHFRMILTGTPVQNNLKEIWALFDFVCEGSLLGTSKTFKMEYENPITKARQKDATVGEKALGTRMAENLQELIGPYFLRRTKAEVQSKELHAKQLRDNKENDPTVGNLDQRIQIEMPTLTRKNDLIVWVYLSPVQEQIYRDFQNLDDIKELLDSTR------SPLVALGILKKICVHP----RLLPERACAQLGLITCEFFFRIESEGL--------------QSNW---FLSSIKNVPPKTLIEESGKLTFLIGLLERLRQEGHRTLVFSQSLKMLDIIDHILKHQGFKVMRIDGTITHITEREKRVQTFQKDSAFNVFLLTTQVGGVGLTLTAANRVVILDPSWNPATDAQAVDRAYRIGQTDNVIIYRLVTCGTMEEKIYRRQIFKE--SLIRQTTGDKKNPFRYFSQQELRELF 638
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004254.1 (pep scaffold:Pmarinus_7.0:GL484668:1435:12215:1 gene:ENSPMAG00000003871.1 transcript:ENSPMAT00000004254.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 200.29 bits (508), Expect = 1.980e-55 Identity = 155/503 (30.82%), Postives = 241/503 (47.91%), Query Frame = 1
Query: 1078 GTGAILADAMGLGKTVQTIALISIILNQ----GPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVS----------IEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLV--ECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLK-NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEV-LLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAK 2532
G ILAD MGLGKT+QTI+ +S + + GP+ L+V P S V +W+ EF W ++ GD+S I + T+ LK + L+ +YE+LL++ L +++ + DEAHRLK+ + + ++ + R+L+TGTPLQN + E ++L+ F P +K S + F +A G+ N + L + + F+LRR + LP K E I+ TP QK YK ++ K+L K G+ L ++ L+K CN +CY+ + L ED EN + L V SGKL + ++L RL+ G ++++ S + LD+L QR+DGS + R + + FN ++ LLS +AGG G+NL A+ ++++D DWNP D QA AR R GQK +V +YRL+T GTVEE +++R K
Sbjct: 3 GNSVILADEMGLGKTIQTISFLSYMFHSHQVYGPF---------LLVVPLSTVTSWQREFATW-APEMNVVVYLGDMSSRNVIREYEWIHQQTKKLKFNALVTTYEILLKDKTVLGAVNWAFLGVDEAHRLKNDDSLLYKSLIEFKTNVRLLITGTPLQNSLKELWSLLHFIMP-----DKFSAWEDF----DAVHGSGSDNGYVS--------LHKELEPFLLRRVKKDVERSLPAKVEQILRVEMTPQQKHYYKWILTRNFKALSKGTR-----GSTSGFLNIMMELKKCCN--------------------HCYL-----IKLPED----------ENVDKHDALQSLVRS------SGKLILLDKLLCRLRETGHRVLIFSQMVRMLDILADYLAMKHFPFQRLDGSIKNEQRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTRGTVEEDIIERAKKK 432
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Yeast
Match: RDH54 (DNA-dependent ATPase; DNA recombination/repair translocase, supercoils DNA and promotes DNA strand opening; stimulates strand exchange by modifying dsDNA topology; involved in recombinational repair of DNA double-strand breaks (DSBs) during mitosis and meiosis; phosphorylated in Mec1p-, Rad53p-dependent way in response to one DSB; contributes to remodelling of nucleosomes; proposed to be involved in crossover interference; interacts with Dmc1p; stimulates Dmc1p and Rad51p [Source:SGD;Acc:S000000277]) HSP 1 Score: 375.941 bits (964), Expect = 9.394e-115 Identity = 285/842 (33.85%), Postives = 425/842 (50.48%), Query Frame = 1
Query: 514 IVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKL-ISNE-GKELGSSMRSALSKVILEEGSSFHIGGKYV----------EILSAVDSPSFETDGNVVLSSSTVPT------TDLSKY-----------VNREFKPVLLQTTVSSST-DLGSDEPQISMPRPTASHNFKHNP-----DCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGF--------------------RAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENET-----------LIQRCLIVCPSSLVLNWKNEFEKWIG-TQIIPFCVSGDVSIEKFTQSLKN--------SVLILSYEMLLRNVEFLQGLS--FDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPG--ASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNG--EKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAK----QQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQN 2784
+ ++ N +Y+++ Y KP+ KKHKTW GDGY ++ S KL NE GK LGSSM + S + E + F G V EI SA ++ S + GN +++ D KY + FK V QT +T S + P N NP + DVI DP L + +RPHQ +GV FMY+C+ G + +G +LAD MGLGKT+ +I LI ++ Q P+ ++ L ++ L+VCP +L+ NWK EF KW+ ++I +S S + +++N VLI+ YE LL E L+ D++VCDE HRLK+G++K ++SL I+R++LLTGTP+QND++EFF ++ F NPG+LG + SF++RF+ PI AR+ + + +E+G E S + +T+ FILRRT + YLP K + I+FC P Q +K +++ L D F+ +L I +L+K+CN P L+ D Y S ++D + S + L SGKL V +L ++ G EK+V+VS++TQTLD++E L ++ R+DGS P+ R IV+ FNR LLS K+GG GLNL+GA+R+IL+D DWNP+ D QAM+RI RDGQK +YRL+TTG ++E +LQRQ+ K Q+ + SN + F+KE+L+++F+ H D+ TH L+ C C + +G I +Y E Q+QN
Sbjct: 99 LSSNENTRYFTIMYRKPTTKKHKTWSGDGYATLKASSDKLCFYNEAGKFLGSSMLPSDSDSLFE--TLFKAGSNEVQLDYELKENAEIRSAKEALS-QNMGNPSPPTTSTTETVPSTKNDGGKYQMPLSQLFSLNTVKRFKSVTKQTNEHMTTVPKTSQNSKAKKYYPVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILG-SFASFKRRFIIPITRARDTANRYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGARL--DFGQLTFSS----SLGLITLLKKVCNSPGLVGS------------DPYY------KSHIKDTQ-------------------SQDSYSRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTK----SNTHDLI-CSC---------------DGLGEEI-EYPETNQQQN 872
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Yeast
Match: RAD54 (DNA-dependent ATPase that stimulates strand exchange; modifies the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family of DNA translocases; forms nuclear foci upon DNA replication stress [Source:SGD;Acc:S000003131]) HSP 1 Score: 360.147 bits (923), Expect = 1.868e-109 Identity = 233/637 (36.58%), Postives = 343/637 (53.85%), Query Frame = 1
Query: 979 VIFDPRLVRRMRPHQIDGVIFMYECVAGF--------RAHNGT--------------------------GAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQII-PFCVSGDVS------------IEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLK--NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAV 2727
V+ DP+L + +RPHQ++GV F+Y CV G A N + G I+AD MGLGKT+Q IAL+ +L QGP + + LI +C+IVCPSSLV NW NE KW+G + P V G S I + Q+ + VLI+SYE L RNV+ L+ + L++ DE HRLK+G + TF A++S+ RR++L+GTP+QND+ E+F L+ F+NPG+LG E FR+ F NPI R+ A+++ I +G L + FI+RRT + YLP K E++IF P+Q +LY L++ + ++K ++ + L I +L+KLCN P LL + EL + Y S D++ K S K + + L ++K + +K+VL+S++TQTLDL+EK+C+ + R+DG+ R ++V FN +E + LLS KAGG G+NLIGANR+IL D DWNPA D QA+AR+WRDGQK +YR I+TGT+EE + QRQ K LS+ +VD L FS + LR +F + ++ C TH+ +C C ++++ A+
Sbjct: 261 VVIDPKLAKILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGP-QGKRLIDKCIIVCPSSLVNNWANELIKWLGPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRAE-FRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGS----QPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDY---NMPGSKARDVQTKY--------------------------SAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERL--FSSDNLRQLFQKNENTI----CETHETYHCKRCNAQGKQLKRAPAM 856
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Yeast
Match: RAD26 (Protein involved in transcription-coupled nucleotide excision repair; repairs UV-induced DNA lesions; recruitment to DNA lesions is dependent on an elongating RNA polymerase II; homolog of human CSB protein [Source:SGD;Acc:S000003796]) HSP 1 Score: 230.335 bits (586), Expect = 1.056e-62 Identity = 172/565 (30.44%), Postives = 257/565 (45.49%), Query Frame = 1
Query: 1015 PHQIDGVIFMYE--CVAGFRA--HNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKW---IGTQIIPFCVSGDVSIEKFT--------------------QSLKNS-------------------------VLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRL-KNGEKLVLVSHFTQTLDLLEKLCKNLDIALQ-----RIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQ 2535
P +I ++F Y+ CV G I+ D MGLGKT+Q IA I+ + + G L LIVCP++++ W NEF+ W + T I+ SG S +KF + KNS +LI +Y L + + L + + V DE H++++ ++ + + L+ RI+L+GTP+QN++ E ++L F PG LG F+Q+FV PIN A+N ++ G + ++ L+ L ++LRR + LP K E ++FC T Q+ Y + L + + L I +LRK+CN P LL R K N ++ GD SGK+ V Q+L+ K G K +L + Q LD+LE+ D L R+DG+T R +V FN S +V LL+ + GG G+NL GANRII++D DWNP+TD QA R WR GQK V +YRL+ G++EE + RQ+ KQ
Sbjct: 290 PGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSG-----LLTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNSKPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGT-LPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLN------QIQNGKRNVLFGIDILRKICNHPDLLDRDT-----------------------------KRHNPDY----------------GDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFNNESF-DVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQ 796
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Yeast
Match: IRC5 (Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increased levels of spontaneous Rad52p foci; SWAT-GFP and mCherry fusion proteins localize to the nucleus [Source:SGD;Acc:S000001934]) HSP 1 Score: 212.231 bits (539), Expect = 1.719e-57 Identity = 181/575 (31.48%), Postives = 281/575 (48.87%), Query Frame = 1
Query: 967 PIRDVIFDPRLVRR--MRPHQIDGV---IFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIIL---NQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKN--------SVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRF-VNPIN--AAREPGASNQAIEEGCEASLI--LQRLTQSFILRR-TEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECK---SLQKDLESEEF-----------NGTAIDALACILMLRKLCN-----DPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFE-----NSTWKEILA-MSVEKLGDHLL---SGKLWVTAQMLMRL-KNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQ 2535
P I PRL++ ++P+Q++G+ I +YE NG ILAD MGLGKTVQ+IAL++ I +GP+ L+ P S + NW NEF K+ + G ++ + LKN ++I SYE++LR+ + + ++ ++ DE HRLK+ + + ++ + R+LLTGTPLQN++ E ++L+ F P + + E F + F + +N + A N+ I + + +LI L + + F+LRR ++V LP K EYII C T Q++ YK + K ++ K+L + F N + D + L + N +P LL + K+N E+ N KKLQN+ + +ST+ + E L L SGKL + +++ L G K+++ S F LDL+E C A RIDGS + R + FN K + LLS +A G G+NL+GA+ ++L+D DWNP D QAM R R GQ+S V VYRL T+E +L R K+
Sbjct: 206 PDDAAIKQPRLLKNCILKPYQLEGLNWLITLYE--------NGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPF---------LVTAPLSTLDNWMNEFAKF-APDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPDIF-ADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIKDFFTLNDEYIGHVSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISN----------------KKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKR 745
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Yeast
Match: CHD1 (Chromatin remodeler that regulates various aspects of transcription; acts in in conjunction with Isw1b to regulate chromatin structure and maintain chromatin integrity during transcription elongation by RNAP II by preventing trans-histone exchange over coding regions; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SLIK complexes [Source:SGD;Acc:S000000966]) HSP 1 Score: 212.231 bits (539), Expect = 1.784e-56 Identity = 168/531 (31.64%), Postives = 247/531 (46.52%), Query Frame = 1
Query: 1009 MRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIIL----NQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIE--------------KFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKE-SFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLE--SEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLK-NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAK 2532
+R Q+ G+ +M F G ILAD MGLGKTVQT+A IS ++ GP+ +IV P S + W + FEKW + C G+ K +++K +VL+ +YE +L++ L + + + DEAHRLK+ + + ++ S ++ R+L+TGTPLQN++ E LV F PG ++E F NQ EE E L R Q FILRR + LP+K E I+ + VQ + YK + L K+ + G L + L+K N P L DN E + +K + + L MS SGK+ + Q+L RLK +G ++++ S + LD+L I QR+DG+ PSA R + FN + V LLS +AGG G+NL+ A+ ++++D DWNP D QAMAR R GQK+ V VYRL++ TVEE +L+R K
Sbjct: 376 LRDFQLTGINWM-----AFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPH---------IIVVPLSTMPAWLDTFEKW-APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDF----------------ENQD-EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNI-----LTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLF--------------DNA----------EERVLQKFGDGKMTRENVLRGLIMS---------SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 836
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Nematostella
Match: EDO39293 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAK4]) HSP 1 Score: 523.857 bits (1348), Expect = 1.113e-171 Identity = 337/851 (39.60%), Postives = 480/851 (56.40%), Query Frame = 1
Query: 466 QTNIPKIQSQNCNKETIVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKEL--GSSMRSALSKVILEEGSSFHIGGKYVEILSAVDSPS------FETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQ--------ISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLK-NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDY---CELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNNAEVNR 2952
Q +I +I K+ + KYYSV + K SKKKHK WDGDG I++ + L EGKE+ GS ++A + IL+EG + GGK +EI+ ++ S F++ +V SS P T +SK K +T + S L P+ +++PRP+ASH +N QP+ DV+ DP L + +RPHQ DGV+F+YECV G R NG GAILAD MGLGKT+Q IALI + QGPY + + R LI+ P SLV NW EF KW+G + + F V+ D+ +++F S VLI+SYEM +R+ + + + FDL +CDEAHRLK+ + KT + L+ +RR+LLTGTP+QND+ EF L++ NPGVLG FR+ + PI ++PGA+++ G + L RLT+ F LRRT +N YLP K E ++FC P +Q LY+ L+ + L+ L + + T ++ CI L+KLCN P LL E + +SL + + K + +S+ + SGKL V ML + GE++VLVS+++QTLD+L+KLC R+DGSTP+A R +V FN C++ V LLS KAGG GLNLIGA+R+ILYD+DWNPA D QAMAR+WRDGQ+ RV +YRL+TTGT+EE + QRQ KQ LS ++ D FS+E+++++FT + C TH LL C C V+Q A EP S + C+LG ++K N S++ L W H+ +++ C D+ IL + ++ VF VN +R
Sbjct: 30 QRSIQEINPYTVTKQPNEEETVTKYYSVVWCKMSKKKHKKWDGDGIIAVRGRSLSLKDLEGKEIAKGSGYKTAELQ-ILQEGHTLCAGGKELEIMGSISSEDYLSGKCFQSTASVS-SSIVAPLTAVSKSFVNPAKHKSSKTGPTKSAALSRMTPRHSIDAPNALALPRPSASHQLANNKSVQPLVDVVVDPHLGQHLRPHQRDGVLFLYECVMGLRNFNGNGAILADEMGLGKTLQCIALIWTLHKQGPYGGQPVCNRILIITPGSLVKNWCAEFRKWLGNERMRVFPVTSDMRVKEFIISPIYPVLIISYEMFIRSQDDIMNIKFDLFICDEAHRLKNSAIKTTTLISGLKTRRRVLLTGTPIQNDLKEFHTLIELCNPGVLG---TLFRRVYEQPIVNGQQPGATSEDKLLGQTRASELNRLTRLFFLRRTSEINEKYLPPKVEMVVFCRPAHLQVTLYRHLLTSRFLRGCLRASCPSSTHLE---CIGALKKLCNHPTLLYSASQGANTLGDE---------DQVSLYDGLLKLFPEC-------NDASELSIAQ------SGKLTVLNSMLEEIHCTGERVVLVSNYSQTLDILQKLCTVKKYRYLRLDGSTPTAKRQSLVERFNAKHCQDFVFLLSSKAGGVGLNLIGASRLILYDIDWNPANDLQAMARVWRDGQRRRVVIYRLLTTGTIEEKIYQRQTTKQGLSGAVADDRKQVKV--DFSQEDVKDLFTLDELTV----CSTHDLLQCQRCNR----VQQ--AEKEPDPSCVQTMTRACQLGMPPTEKK--MNVSIAELMKWQHFPSPLCLTELCDDA-ILRAEDHITFVFRNEVNEDGTSR 835
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Nematostella
Match: EDO36092 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SJN9]) HSP 1 Score: 357.451 bits (916), Expect = 2.250e-109 Identity = 222/600 (37.00%), Postives = 324/600 (54.00%), Query Frame = 1
Query: 979 VIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCV-SG-----DVSIEKFTQS----LKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDL---ESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLG----DHLLSGKLWVTAQMLMRLK--NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSR--------VCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
V+ DP L + +RPHQ +GV F+Y+C G R G I+AD MGLGKT+Q I LI +L QGP + ++ + +IV PSSLV NW NE KW+G +I + SG D ++E++ VLI+SYE + L S L++CDE HRLK+ ++T+ A+ L RR+LL+GTP+QND+ E+F+LV F N G+LG E F+++F PI R+ A++ ++G E L L I+RRT + + YLP K E ++ C T +Q +YK L+ K+L+ L + G + +L I L+KLCN P L+ + + E+ ++ +L M +K LSGK+ V +L K + +K+VLVS++TQTLDL EKLC+ R+DGS R +IV FN + + +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK + V +YRL++TGT+EE + QRQ K+ + S + ++ FS E+LR++F + ++ TH C C N
Sbjct: 142 VVVDPLLCKVLRPHQREGVKFLYDCTTGARIQGSYGCIMADEMGLGKTLQCITLIWTLLRQGP-SAQPIVSKVIIVAPSSLVKNWYNELYKWLGNRINALAIDSGSKDEIDRNLERYMSQQGSRTPTPVLIISYETFRLHAAALHNGSVGLVICDEGHRLKNLESQTYQALNKLNATRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTVSE-FKRKFETPILRGRDADATDAEHKKGIERLTELASLVNKCIIRRTAAILSKYLPIKVEQVVCCRLTALQTAIYKRLIHSKALKIKLAEGSKGKPGGVSTSSLGFITSLKKLCNHPELI----------------------------------YEKAQMEDEGFEGVLEMFPQKFDLKNVQPELSGKMQVLDYILAVTKATSDDKVVLVSNYTQTLDLFEKLCRQRRYQHVRLDGSMSIKKRQKIVDRFNDPKGGDFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKKAIFDLLLQVFIYRLLSTGTIEEKIFQRQAHKK--ALSSCVVDEEENVEKHFSVEQLRDLFRLNEETLSD----THDKFKCRRCVN 699
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Nematostella
Match: EDO46132 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RQM3]) HSP 1 Score: 245.358 bits (625), Expect = 5.650e-70 Identity = 175/547 (31.99%), Postives = 278/547 (50.82%), Query Frame = 1
Query: 1006 RMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILN--------------QGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQ----KDLESE---------------EFNGTAIDAL--ACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQML-MRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQ 2538
R+R +Q +GV F+Y+ +R++NG AIL D MGLGKTVQ IAL+S IL QGP + + LIVCP S++ NWK+E + W ++ + S + K V++ +Y+ L NV +++ +V DE H+LK S K A + L+++RR LTGTPLQN E + ++ +ANPG LG N F + I + A+ + + G S Q +++LRRT+ + +LP KD+ ++FC TP Q+ +Y L++ +Q KD + +G + +L C + K+ N LL+ V ++ ++K + ++ E + + + + + S + L + GK+ V ++L M K+ K++L S+ T+ L++LE + R+DG T A RMR+V +FN + L+S KAGG GLN GAN +I++D WNP+ D QA R +R GQ+ V V RLI++GT+EE + RQ+ KQQ
Sbjct: 11 RLRDYQREGVQFLYQ---HYRSNNG--AILGDDMGLGKTVQVIALLSAILGKTGTRADVFGKYIGQGPSGKQKGV--FLIVCPGSMLYNWKDELDTWGYFRVKMYHGSSKEMVMDQAAKGKLDVVLTTYDTLRINVTEFDCVNWLAVVMDEVHKLKDPSAKNTKAAKRLKVQRRFGLTGTPLQNRWSELWCVLDWANPGCLGSNLR-FDAFYGKAIRKGQRHDANKRELALGRTRSSQFQSKLNNWMLRRTKDLIAQHLPHKDDKVVFCSLTPFQEDVYMALLQSPDVQLVRKKDYRCDCGSGQNRGKCCYSCCPVSGEPLKSLLMRCFQLFLKVANHAALLMPGVKQTDD----------QRKRAKAICEGVLTRHPHFV------QSLAENSFQTLSNPEYCGKMKVLDKLLRMFEKDKCKVLLFSYSTELLNILENYVIGRGLVFSRLDGQTSPAQRMRVVREFNGNRDIFICLVSTKAGGLGLNFTGANVVIIFDPTWNPSNDLQAQDRAYRIGQRRDVQVLRLISSGTIEEMMYLRQIYKQQ 533
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Nematostella
Match: EDO41059 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S5B2]) HSP 1 Score: 222.246 bits (565), Expect = 9.239e-62 Identity = 170/540 (31.48%), Postives = 271/540 (50.19%), Query Frame = 1
Query: 1000 VRRMRPHQIDGV---IFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIIL---NQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEK-------FTQSLKNSVLILSYEML---LRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLY-KMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILL-------------IRYVMDKENRSTELD-NCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL--SGKLWVTAQMLMRLK-NGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQ 2517
+ ++P+Q+ G+ I M+E G ILAD MGLGKTVQ I+ I+ ++ + GP+ LI+ PSS + NW EF++W T I F + E+ + V+I +Y M + FL+ L +V DE H LK+ ++ ++ + ++ KRR+LLTGTP+QND+ E +L+ F P + + + F N + A + I+E E + +++ + F+LRR + LP K E++I C + QK L+ K++++C + +D D ++ LR + N P+LL ++Y D ENR +E+D C E ++++ D +L L E ++S LG+ LL SGK ML +K NG++++L S FT +D++E ++ R+DG TP R ++ +FN + LLS KAGG G+NL AN +IL+D+D+NP D QA R R GQ V VYRLI TVE+++L+
Sbjct: 110 AKSLKPYQLTGLNWLILMHE--------QGVNGILADEMGLGKTVQAISFIAHLIEKGDDGPH---------LIIVPSSTLNNWVKEFKQWCPT--IRFTLYYGSQEERTYLREEILDEHSDFKVIITTYNMATGGFEDTSFLRQLRPHYVVFDEGHMLKNMQSQRYLKLTRIRAKRRLLLTGTPMQNDLLELMSLLSFVMPTIFDGRTDGLKLLFGN---KKLDRDADSGYIKERAEQA---KKIMKPFVLRRLKKDVLQELPQKHEHVIHCELSTSQKDLHSKLMLKCYNEYRDASKSR------DYKNILMALRMMSNHPLLLRNYYKDETLREMAVKYCRDIENRGSEVDLVC-----EDMTVMSDF--ELHRLCLEQR------SLSSYVLGEELLYDSGKFERLNAMLPEMKDNGDRVLLFSQFTLVMDIIEVYLQHCGYRYFRLDGQTPVVERQPMIDNFNSDPDIFLFLLSTKAGGLGINLTSANVVILHDIDFNPYNDKQAEDRCHRVGQTRDVHVYRLIAKDTVEDNMLK 605
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Nematostella
Match: EDO31943 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SWF7]) HSP 1 Score: 212.231 bits (539), Expect = 6.126e-57 Identity = 161/513 (31.38%), Postives = 247/513 (48.15%), Query Frame = 1
Query: 1009 MRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSG----DVSIEKFTQSLKN-SVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNK-ESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILM-LRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLL--SGKLWVTAQMLMRL-KNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQ 2517
+RP+Q++GV +M +C A G G IL D MGLGKT+QTI+++ +L + ++ L L++ P S++ NWKNE +++ + + + +++ K Q +KN VL+ SYE+ LR FLQ + + DEAHRLK+ + + + + ILLTGTP+QN++ E ++L+ F P + E F F N + R+ S+ L +L F+LRR + + LP K E I++ + +QK+ YK + L KD + +G + + L IL LRK N P L + E A LG+HL+ SGKL Q+L L K G K+++ S T+ LD+++ A +R+DGS R + +FN + LLS KAGG+GLNL+ A+ +I D D+NP D QA AR R GQ V + RL+ TVEE +L+
Sbjct: 16 LRPYQLEGVGWMRDC-----ALTGHGCILGDEMGLGKTIQTISVL--LLLKRTIKHTGLF---LVLSPLSVMANWKNEIKRFTKSLKVLSLIGSKEEREITKNKLFQDIKNIDVLLTSYEICLRETSFLQRFHWSAVAVDEAHRLKNSQSLLYTELIQFKYDFSILLTGTPVQNNLKELYSLLSFIAPSIFDLEYVEEFETAFKN-LATGRDNTNSD------------LPQLLSPFLLRRVKSEVMVDLPEKSEVILYAGMSELQKKYYKAI-----LMKDYDIFSTDGPSRNKLNSILTNLRKCVNHPYLF-----------------------------------------DGVEPEPFA-----LGEHLITASGKLHAIDQLLSYLYKRGHKVLMFSQMTRMLDIVQDYLGYRGYAYERLDGSVRGEERYIAIKNFNEEQDNFIFLLSTKAGGQGLNLMSADTVIFVDSDYNPQNDLQAAARAHRIGQTRPVKIIRLVGRNTVEEIILK 454
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Medaka
Match: rad54b (RAD54 homolog B [Source:NCBI gene;Acc:101169636]) HSP 1 Score: 528.48 bits (1360), Expect = 9.927e-172 Identity = 320/829 (38.60%), Postives = 465/829 (56.09%), Query Frame = 1
Query: 529 NVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVI-LEEGSSFHIGGKYVEILSAVDSPSF-------ETDGNVVLSSSTVPTTDLSKYVNREFKP--VLLQTTVSSSTDLG----------SDEPQISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVL-LLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNE-PIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNN 2937
V+Y+SV + K SKKKHK W+GD + L EGK++G +S++ L EG + IGGK VE++ + S + E S + + ++ F P +L Q + G S + MPRP+ +H + HN P+ +V+ DP L + +RPHQ DG++F+YECV G R + GAILAD MGLGKT+Q++AL +L QGPY + + +R L+V P SLV NWK EF KW+G + I F V D IE+F S +SVL++SYEMLLR +E +Q + F LI+CDE HRLK+ S KT A+ SL RR++LTGTP+QND+ EF +++F NPG+LG + ++R+ + PI +R+P + + G E + L RLT FILRRT+ + YLP + ++ +FC P+ +Q++LY+ L+ + + ++ T LACI L+KLCN P LL V E+ ES +L + ++L +L + E +++ D SGKL V + +L +L +++VLVS++TQTLDLL+ LCK++ R+DG TP+ R R+V FN + L LLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YRL+T GT+EE + QRQV+K Q + V + +FS ELR++F+ + P C TH LLNC C + +GAV V E P R G R+ Q + + S+S L W H+ G+A D + S K ++ F T+++
Sbjct: 144 GVRYFSVVWCKASKKKHKRWEGDAVLITRGRTATLKDMEGKDIGQGRGYKVSELASLSEGETLMIGGKEVEVMGIISSEDYVKGRCFQEGQTEQAESRAKAGPPSSCRPTSKPFTPPTMLGQPAHAGGKAEGKQSCKPHHDPSAPGALVMPRPSTNHQWLHNKAALPVVEVVVDPHLTQHLRPHQRDGLLFLYECVMGMRVASCYGAILADEMGLGKTLQSVALSWTLLKQGPYGGKPVAKRVLVVTPGSLVQNWKAEFNKWLGRERISVFTVDQDHRIEQFVLSPLHSVLVISYEMLLRCLEQVQKVEFGLIICDEGHRLKNSSIKTSSALTSLSCDRRVILTGTPVQNDLQEFHAIIEFVNPGILG-SPTAYRKLYEEPILRSRQPSCTEEERVLGEERAAELSRLTGMFILRRTQEIINRYLPPRVDWTLFCEPSALQQELYQRLLCHRVFRDCMQGSTQTST---HLACITALKKLCNHPGLLYATVK--------------ERTESGTLESSLYERLADL------FPETYSLAGFNTAD---SGKLLVLSDLLAAIRQLSPSDRVVLVSNYTQTLDLLQDLCKHMGYTFCRLDGQTPTGQRQRLVDGFNSSYSQNFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRLLTAGTIEERIYQRQVSK-QGLSGTVVDMGKGAEHTSFSSSELRDLFSL---TETP--CLTHDLLNCGC--SMDGAVNDVVEEEEDPTSGRPCQLGRQGDRKGQTQK--HLSMSELMQWRHFSGDAH---SFSDPYLDYSRKHITFAFQTTISH 932
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Medaka
Match: rad54b (RAD54 homolog B [Source:NCBI gene;Acc:101169636]) HSP 1 Score: 479.945 bits (1234), Expect = 6.549e-157 Identity = 281/680 (41.32%), Postives = 405/680 (59.56%), Query Frame = 1
Query: 916 MPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIP-FCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM---RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVL-LLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVE-QSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNN 2937
MPRP+ +H + HN P+ +V+ DP L + +RPHQ DG++F+YECV G R + GAILAD MGLGKT+Q++AL +L QGPY + + +R L+V P SLV NWK EF KW+G + I F V D IE+F S +SVL++SYEMLLR +E Q + F LI+CDE HRLK+ S KT A+ SL RR++LTGTP+QND+ EF +++F NPG+LG + ++R+ + PI +R+P + + G E + L RLT FILRRT+ + YLP + ++ +FC P+ +Q++LY+ L+ + + ++ T LACI L+KLCN P LL V K +R T S +L + ++L +L + E +++ D SGKL V + +L +L +++VLVS++TQTLDLL+ LCK++ R+DG TP+ R R+V FN + L LLS KAGG GLNLIGA+ ++LYD+DWNPA D QAMAR+WRDGQK V +YRL+T GT+EE + QRQV+K Q + V + +FS ELR++F+ + P C TH LLNC C + +GAV + +P R G R+ Q + + S+S L W H+ G+A D + S K ++ F T+++
Sbjct: 1 MPRPSTNHQWLHNKAALPVVEVVVDPHLTQHLRPHQRDGLLFLYECVMGMRVASCYGAILADEMGLGKTLQSVALSWTLLKQGPYGGKPVAKRVLVVTPGSLVQNWKAEFNKWLGRERISVFTVDQDHRIEQFVLSPLHSVLVISYEMLLRCLE--QKVEFGLIICDEGHRLKNSSIKTSSALTSLSCDRRVILTGTPVQNDLQEFHAIIEFVNPGILG-SPTAYRKLYEEPILRSRQPSCTEEERVLGEERAAELSRLTGMFILRRTQEIINRYLPPRVDWTLFCEPSALQQELYQRLLCHRVFRDCMQGSTQTST---HLACITALKKLCNHPGLLYATV-KKGSRMT-----------SGTLESSLYERLADL------FPETYSLAGFNTAD---SGKLLVLSDLLAAIRQLSPSDRVVLVSNYTQTLDLLQDLCKHMGYTFCRLDGQTPTGQRQRLVDGFNSSYSQNFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRLLTAGTIEERIYQRQVSK-QGLSGTVVDMGKGAEHTSFSSSELRDLFSL---TETP--CLTHDLLNCGC--SMDGAVNGRHTDEEDPTSGRPCQLGRQGDRKGQTQK--HLSMSELMQWRHFSGDAH---SFSDPYLDYSRKHITFAFQTTISH 640
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Medaka
Match: rad54l (RAD54 like [Source:NCBI gene;Acc:101160723]) HSP 1 Score: 367.081 bits (941), Expect = 7.383e-113 Identity = 228/606 (37.62%), Postives = 335/606 (55.28%), Query Frame = 1
Query: 919 PRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKN-----------SVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM--RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
P +A + + D P+ V+ DP L + +RPHQ +GV F++ECV G R G I+AD MGLGKT+Q IAL+ +L Q P + + I + ++V PSSLV NW NE KW+G ++ P + G S E+ + L N +LI+SYE + L L++CDE HRLK+ N+T+ A+ +++ +RR+L++GTP+QND+ E+F+LV F N G+LG + + F++RF PI R+ AS+ G E L + ++RRT + + YLP K E ++ C TP+Q +LY++ + K L++ + + +L+ I L+KLCN P L+ D C + +E D L + KE+ + LSGK+ V +L R +K+VLVS++TQTLDL EKLC++ R+DGS R ++V FN S + + +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK VYRL+TTGT+EE +LQRQ K+ + S + + FS ELR +FT + ++A TH C C N
Sbjct: 113 PNLSAHDLIRADKDKLPVH-VVVDPVLGKVLRPHQREGVRFLWECVTGRRIPGSHGCIMADEMGLGKTLQCIALVWTLLRQSP-DGKPEIDKAIVVSPSSLVRNWYNEVGKWLGGRVSPVAIDGG-SKEEIDRQLVNFVSQNGLRVPTPILIISYETFRLHAAVLHRGRVGLVICDEGHRLKNADNQTYQALNAMKAQRRVLISGTPIQNDLLEYFSLVHFVNAGILG-SAQDFKKRFELPILKGRDADASDADRRAGEEKLKELIGIVNRCLIRRTSDILSKYLPVKVEQVVCCRLTPLQAELYRLFLR---QAKPLQTLQQGSMNVSSLSSITSLKKLCNHPTLI-------------HDKC-VSGEEGFDGALD-------LFPPGYSSKEV---------EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRSRRYLYVRLDGSMSIKKRAKMVERFNSPSSPDFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYVYRLLTTGTIEEKILQRQAHKK--ALSSCVVDEEQDVERHFSLGELRELFTLNEETASD----THDKFRCRRCVN 675
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Medaka
Match: rad54l (RAD54 like [Source:NCBI gene;Acc:101160723]) HSP 1 Score: 253.832 bits (647), Expect = 6.930e-74 Identity = 160/430 (37.21%), Postives = 238/430 (55.35%), Query Frame = 1
Query: 1414 EAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLM--RLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
HRLK+ N+T+ A+ +++ +RR+L++GTP+QND+ E+F+LV F N G+LG + + F++RF PI R+ AS+ G E L + ++RRT + + YLP K E ++ C TP+Q +LY++ + K L++ + + +L+ I L+KLCN P L+ D C + +E D+ + KE+ + LSGK+ V +L R +K+VLVS++TQTLDL EKLC++ R+DGS R ++V FN S + + +LS KAGG GLNLIGANR++++D DWNPA D QAMAR+WRDGQK VYRL+TTGT+EE +LQRQ K+ + S + + FS ELR +FT + ++A TH C C N
Sbjct: 39 HGHRLKNADNQTYQALNAMKAQRRVLISGTPIQNDLLEYFSLVHFVNAGILG-SAQDFKKRFELPILKGRDADASDADRRAGEEKLKELIGIVNRCLIRRTSDILSKYLPVKVEQVVCCRLTPLQAELYRLFLR---QAKPLQTLQQGSMNVSSLSSITSLKKLCNHPTLI-------------HDKC-VSGEEGFDGALDLFP-------PGYSSKEV---------EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRSRRYLYVRLDGSMSIKKRAKMVERFNSPSSPDFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYVYRLLTTGTIEEKILQRQAHKK--ALSSCVVDEEQDVERHFSLGELRELFTLNEETASD----THDKFRCRRCVN 428
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Medaka
Match: ercc6 (ERCC excision repair 6, chromatin remodeling factor [Source:NCBI gene;Acc:101166245]) HSP 1 Score: 229.565 bits (584), Expect = 3.264e-61 Identity = 155/531 (29.19%), Postives = 256/531 (48.21%), Query Frame = 1
Query: 997 LVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALI-----SIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLK---------NSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRR--TEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRL--KNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQ 2535
L +++ +Q GV +M+E G IL D MGLGKT+Q I+ + S + +G + +IVCP++++ W EF W PF V+ FT + + +LI SY + + L + I+ DE H++++ + A + Q R +L+G+P+QN++ E ++L F PG LG F ++F PI AS ++ + + +L+ ++LRR ++ L LP K+E ++FC T Q+Q+Y+ ++ K + + L NG + + ++ LRK+CN P L +++ I + E W+ SGKL + + L+RL K G +++L S Q LD+LE + + + ++DG+T A R +++ +N+ + LL+ K GG G+NL GANR+I+YD DWNP+TD QA R WR GQ +V +YRL+T GT+EE + RQ+ KQ
Sbjct: 494 LWKKLYKYQQTGVRWMWELHC-----QQAGGILGDEMGLGKTIQVISFLAGLSYSKLRTRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWW----PPFRVAVLHETGSFTSKKEKLIPEIASCHGILITSYSAVRNLQDILIRYDWHYIILDEGHKIRNPNAAVTAACKQFQTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGT-LPVFMEQFSVPITMGGYSNASPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEEQRQVYQSFLDSKEVYQIL-----NGD-MQVFSGLIALRKICNHPDLF---------------------SGGPRMLKGIPEDQLTEEEHFGFWRR--------------SGKL-IVVESLLRLWFKQGHRVLLFSQSRQMLDILEVFVRENNYSYLKMDGTTTIASRQPLIARYNQDRSIFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQTLQVTIYRLLTAGTIEEKIYHRQIFKQ 972
BLAST of DNA repair and recombination protein RAD54B vs. Planmine SMEST
Match: SMESG000074988.1 (SMESG000074988.1) HSP 1 Score: 1712.2 bits (4433), Expect = 0.000e+0 Identity = 842/853 (98.71%), Postives = 847/853 (99.30%), Query Frame = 1
Query: 397 MRRTAAPSKILDNNKLRKIFNYAQTNIPKIQSQNCNKETIVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVILEEGSSFHIGGKYVEILSAVDSPSFETDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQISMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQNQQKPFCNTSLSHLNSWTHWVGEAEISDKCRDSLILESVKMVSCVFLRTVNNAEVNRY 2955
MRRTAAPSKILDNNKLRKIFNYAQTNIPKIQSQNCNKETIVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVILEEGSSFHIGGKYVEILSAVDSPSFE DGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQISMPRPTASHNFKHNPDC PIRDVIFDPRL RRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQ+CLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFL GLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGC+KESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEK ESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQLSTSL+DLSSSKSNLNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQ+QQKPFCNTSLS LNSWTHWVGEAEIS+KCRDSLILESVKMVSCVFLRTVNNAEVNRY
Sbjct: 1 MRRTAAPSKILDNNKLRKIFNYAQTNIPKIQSQNCNKETIVASSNVKYYSVAYGKPSKKKHKTWDGDGYISISDSRIKLISNEGKELGSSMRSALSKVILEEGSSFHIGGKYVEILSAVDSPSFENDGNVVLSSSTVPTTDLSKYVNREFKPVLLQTTVSSSTDLGSDEPQISMPRPTASHNFKHNPDCHPIRDVIFDPRLARRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQKCLIVCPSSLVLNWKNEFEKWIGTQIIPFCVSGDVSIEKFTQSLKNSVLILSYEMLLRNVEFLHGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCSKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKMESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKEVLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQLSTSLIDLSSSKSNLNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCENPNGAVEQSVAVNEPIGSRINDYCELGQRQDQQKPFCNTSLSQLNSWTHWVGEAEISEKCRDSLILESVKMVSCVFLRTVNNAEVNRY 853
BLAST of DNA repair and recombination protein RAD54B vs. Planmine SMEST
Match: SMESG000049182.1 (SMESG000049182.1) HSP 1 Score: 357.451 bits (916), Expect = 1.255e-108 Identity = 229/608 (37.66%), Postives = 332/608 (54.61%), Query Frame = 1
Query: 913 SMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCV---SGDVSIEKFTQSLKNS-------VLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKD-LESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKN--GEKLVLVSHFTQTLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE-VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQQXXXXXXXXXXXXXXXNTFSKEELRNIFTFHIDSAIPFGCWTHQLLNCDCCEN 2694
S P +A K + D Q I V+ DP L + +RPHQ +GV FMY+CV G + + G I+AD MGLGKT+Q I+L+ +L QGP + LI + +IV PSSLV NW+NE KW+ +I + S D + T + S VLI+SYE + + L S LI+CDE HRLK+ N+T+ ++ L +++R+LL+GTP+QND+ E+F+LV F N G+LG E F++ + PI +R+ AS + +G E L ++ I+RRT+ + T YLP K E ++ C VQ+Q+Y+ ++ K+ KD L A +L I L+K+CN P L+ + ++ + FE S S + SGK V ML +K+ +K+V+VS++TQTLD+ E +CK R+DGS R +IV FN +E V +LS KAGG GLNLIGANR+ ++D DWNPA D QAMAR+WRDGQK + +YRLI TGT+EE +LQRQ K+ + S + + FS EL+ +F+++I + TH+ C C N
Sbjct: 176 SPPELSAHEQLKVDLDKQNIH-VVVDPMLSKVLRPHQREGVKFMYDCVTGMQIADSYGCIMADEMGLGKTLQCISLMWTLLRQGP-TGKPLIDKAVIVAPSSLVKNWQNEINKWLAAKISCMTIDSGSKDDIDKNLTYFVNQSGYRILYPVLIISYETFRLHAKVLHKGSVGLILCDEGHRLKNSENQTYQSLIQLSVQKRVLLSGTPIQNDLLEYFSLVHFVNQGILGTASE-FKRHYETPILRSRDAEASPEDHSKGKERLQELLKIVNCCIIRRTQSLLTKYLPVKIEQVVCCKLISVQEQIYEDFMKRKA--KDVLLKAAGEKVAFSSLQAITSLKKICNHPDLVYDKMCERAD-----------------------------GFERSFSYLPEGYSPTRFNPQ-YSGKFQVLDCMLAVIKSTTNDKVVVVSNYTQTLDICELMCKTRGYVFVRLDGSMSIKKRAKIVDKFNDPYSQEFVFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKQCFIYRLIATGTIEEKILQRQAHKK--ALSSCVIDQEEDVERHFSLSELKELFSYNIGTLSD----THEKFKCKRCVN 742
BLAST of DNA repair and recombination protein RAD54B vs. Planmine SMEST
Match: SMESG000049182.1 (SMESG000049182.1) HSP 1 Score: 226.098 bits (575), Expect = 6.400e-64 Identity = 136/349 (38.97%), Postives = 202/349 (57.88%), Query Frame = 1
Query: 913 SMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCV---SGDVSIEKFTQSLKNS-------VLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKD-LESEEFNGTAIDALACILMLRKLCNDPILL 1926
S P +A K + D Q I V+ DP L + +RPHQ +GV FMY+CV G + + G I+AD MGLGKT+Q I+L+ +L QGP + LI + +IV PSSLV NW+NE KW+ +I + S D + T + S VLI+SYE + + L S LI+CDE HRLK+ N+T+ ++ L +++R+LL+GTP+QND+ E+F+LV F N G+LG E F++ + PI +R+ AS + +G E L ++ I+RRT+ + T YLP K E ++ C VQ+Q+Y+ ++ K+ KD L A +L I L+K+CN P L+
Sbjct: 127 SPPELSAHEQLKVDLDKQNIH-VVVDPMLSKVLRPHQREGVKFMYDCVTGMQIADSYGCIMADEMGLGKTLQCISLMWTLLRQGP-TGKPLIDKAVIVAPSSLVKNWQNEINKWLAAKISCMTIDSGSKDDIDKNLTYFVNQSGYRILYPVLIISYETFRLHAKVLHKGSVGLILCDEGHRLKNSENQTYQSLIQLSVQKRVLLSGTPIQNDLLEYFSLVHFVNQGILGTASE-FKRHYETPILRSRDAEASPEDHSKGKERLQELLKIVNCCIIRRTQSLLTKYLPVKIEQVVCCKLISVQEQIYEDFMKRKA--KDVLLKAAGEKVAFSSLQAITSLKKICNHPDLV 470
BLAST of DNA repair and recombination protein RAD54B vs. Planmine SMEST
Match: SMESG000049182.1 (SMESG000049182.1) HSP 1 Score: 226.098 bits (575), Expect = 2.190e-63 Identity = 136/349 (38.97%), Postives = 202/349 (57.88%), Query Frame = 1
Query: 913 SMPRPTASHNFKHNPDCQPIRDVIFDPRLVRRMRPHQIDGVIFMYECVAGFRAHNGTGAILADAMGLGKTVQTIALISIILNQGPYENETLIQRCLIVCPSSLVLNWKNEFEKWIGTQIIPFCV---SGDVSIEKFTQSLKNS-------VLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKD-LESEEFNGTAIDALACILMLRKLCNDPILL 1926
S P +A K + D Q I V+ DP L + +RPHQ +GV FMY+CV G + + G I+AD MGLGKT+Q I+L+ +L QGP + LI + +IV PSSLV NW+NE KW+ +I + S D + T + S VLI+SYE + + L S LI+CDE HRLK+ N+T+ ++ L +++R+LL+GTP+QND+ E+F+LV F N G+LG E F++ + PI +R+ AS + +G E L ++ I+RRT+ + T YLP K E ++ C VQ+Q+Y+ ++ K+ KD L A +L I L+K+CN P L+
Sbjct: 176 SPPELSAHEQLKVDLDKQNIH-VVVDPMLSKVLRPHQREGVKFMYDCVTGMQIADSYGCIMADEMGLGKTLQCISLMWTLLRQGP-TGKPLIDKAVIVAPSSLVKNWQNEINKWLAAKISCMTIDSGSKDDIDKNLTYFVNQSGYRILYPVLIISYETFRLHAKVLHKGSVGLILCDEGHRLKNSENQTYQSLIQLSVQKRVLLSGTPIQNDLLEYFSLVHFVNQGILGTASE-FKRHYETPILRSRDAEASPEDHSKGKERLQELLKIVNCCIIRRTQSLLTKYLPVKIEQVVCCKLISVQEQIYEDFMKRKA--KDVLLKAAGEKVAFSSLQAITSLKKICNHPDLV 519
BLAST of DNA repair and recombination protein RAD54B vs. Planmine SMEST
Match: SMESG000014388.1 (SMESG000014388.1) HSP 1 Score: 230.335 bits (586), Expect = 9.775e-62 Identity = 152/499 (30.46%), Postives = 249/499 (49.90%), Query Frame = 1
Query: 1075 NGTGAILADAMGLGKTVQTIALISIILNQ--GPYENETLIQRCLIVCPSSLVLNWKNEFEKW---IGTQIIPFCVSGDVSIEKFTQSLKN--SVLILSYEMLLRNVEFLQGLSFDLIVCDEAHRLKHGSNKTFIAVESLQIKRRILLTGTPLQNDMDEFFNLVQFANPGVLGCNKESFRQRFVNPINAAREPGASNQAIEEGCEASLILQRLTQSFILRRTEIVNTLYLPTKDEYIIFCLPTPVQKQLYKMLVECKSLQKDLESEEFNGTAIDALACILMLRKLCNDPILLIRYVMDKENRSTELDNCYIEKKESLSLVEDIRKKLQNLEFENSTWKEILAMSVEKLGDHLLSGKLWVTAQMLMRLKNGEKLVLVSHFTQ---TLDLLEKLCKNLDIALQRIDGSTPSALRMRIVSDFNRISCKE--VLLLSCKAGGEGLNLIGANRIILYDLDWNPATDAQAMARIWRDGQKSRVCVYRLITTGTVEESLLQRQVAKQ 2535
NG G IL D MGLGKT+Q IA ++ + G Y+ I LIVCP++++ W +EF W ++ SG E+ +S+ + VLI +Y ++ + L + I+ DE H++K+ + K + + + R++++G+P+QN++ E ++LV F PG LG + SF Q F PI AS +E + +++ ++LRRT+ L LP K E ++FC T Q ++Y+ + + ++ + ++ ++MLRK+CN P L+ T C ++ L + + +F G SGK+ V ++L G+ VL+ FTQ L +L++ + ++ +DG+T R IV FN KE + LL+ + GG GLNL+GA+R++++D DWNP TD QA R WR GQ +V +YRL+ +G+VEE + RQV KQ
Sbjct: 298 NGAGGILGDEMGLGKTIQVIAFLAGLSRSKGGNYD----IGPVLIVCPATVMRQWMDEFRAWAPLFRVALLHATGSGYDKPERLLESIAHHPGVLITTYSSMVLHHPLLTRYDWQYIILDEGHKIKNPNAKVTHCCKQFETRHRLIMSGSPIQNNLKELWSLVDFIYPGKLG-SLASFIQNFAVPIMKGGYEHASPLQVETAYRCACVVRDTINEYLLRRTKAEVELQLPRKTEQVLFCGLTGHQNEVYREYLASRQCKQIIAGQQV------PFPGLVMLRKICNHPDLV-----------TGGPKCVLD-HPILGFAREATDDGHSYKF----------------GHFSRSGKMVVVKELLRLWYRGKHKVLL--FTQGRMMLQILKRFIEQQGYSMCTMDGTTAIGSRHAIVDKFNDSPYKEAFIFLLTTRVGGLGLNLVGADRVLVFDPDWNPCTDLQARERAWRIGQNRKVVIYRLVISGSVEEKIYHRQVFKQ 755 The following BLAST results are available for this feature:
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of DNA repair and recombination protein RAD54B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009590 ID=SMED30009590|Name=DNA repair and recombination protein RAD54B|organism=Schmidtea mediterranea sexual|type=transcript|length=3155bpback to top protein sequence of SMED30009590-orf-1 >SMED30009590-orf-1 ID=SMED30009590-orf-1|Name=SMED30009590-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=854bp MRRTAAPSKILDNNKLRKIFNYAQTNIPKIQSQNCNKETIVASSNVKYYSback to top Annotated Terms
The following terms have been associated with this transcript:
|
