SMED30009581

Overview
NameSMED30009581
Smed IDSMED30009581
Length (bp)5675
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30009581 (SMED30009581) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30009581 (SMED30009581) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30009581 (SMED30009581) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30009581 (SMED30009581) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30009581

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30009581SMESG000074980.1 SmedASXL_015958SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30009581SMESG000074980.1 SmedASXL_015958SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30009581 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002797:9383..17935 +28175
Homology
BLAST of SMED30009581 vs. Planmine SMEST
Match: SMESG000074980.1 (SMESG000074980.1)

HSP 1 Score: 2788.06 bits (7226), Expect = 0.000e+0
Identity = 1721/1726 (99.71%), Postives = 1721/1726 (99.71%), Query Frame = 3
Query:  123 QQQFDFXXXXXXXXXXXXXXXCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITGSNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRXXXXXXXXXXXXXXXXXYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPXXXXXXXXXXXXXHDNGSMINATAASNLRSSTIMTTTSHGSNXXXXXXXXXXXQHPIMPRTLQYQPTGQIMHQLATQPXXXXXXXXXTFKRPTNRKSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDXXXXXXXLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISXXXXXXXXXLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLXXXXXXXXXXXXXXPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLXXXXXXXXXXXXXAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTXXXXXXVAHNEISSLLQRQEQRDPXXXXXXXXXXXXTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLXXXXXXXXXXXXQRQLLSGTVSDLGNGASHXXXXXXXXXXXXELFVPGCFIEHEKSSLQSMQXXXXXXXXXXXXXXXWNHSSPSMPVLAPQEPFCTXXXXXXXXXXXXXXDNPAVKSNHISIQPVYDXXXXXX-XXXXXXXXXDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTXXXXXXXXXXXXXXXXXXXXLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQXXXXXXXXXXXXXXXXXGYQPISDHQAXXXXXXXXXXXXXXXXXXXDQTSTKKRKEXXXXXXXXXXXYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTXXXXXXXXXXXXXXXXPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK 5297
            QQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITGSNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTTTSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQIQTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCCAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVAHNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLGNGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVSTSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPVYDYS     NLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDHQASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK
Sbjct:   12 QQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITGSNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTTTSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQIQTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCCAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVAHNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLGNGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVSTSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPVYDYSSQSQINLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDHQASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK 1737          
BLAST of SMED30009581 vs. Planmine SMEST
Match: SMESG000074980.1 (SMESG000074980.1)

HSP 1 Score: 2786.9 bits (7223), Expect = 0.000e+0
Identity = 1725/1727 (99.88%), Postives = 1725/1727 (99.88%), Query Frame = 3
Query:  123 QQQFDFXXXXXXXXXXXXXXXCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITG--SNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRXXXXXXXXXXXXXXXXXYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPXXXXXXXXXXXXXHDNGSMINATAASNLRSSTIMTTTSHGSNXXXXXXXXXXXQHPIMPRTLQYQPTGQIMHQLATQPXXXXXXXXXTFKRPTNRKSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDXXXXXXXLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISXXXXXXXXXLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLXXXXXXXXXXXXXXPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLXXXXXXXXXXXXXAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTXXXXXXVAHNEISSLLQRQEQRDPXXXXXXXXXXXXTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLXXXXXXXXXXXXQRQLLSGTVSDLGNGASHXXXXXXXXXXXXELFVPGCFIEHEKSSLQSMQXXXXXXXXXXXXXXXWNHSSPSMPVLAPQEPFCTXXXXXXXXXXXXXXDNPAVKSNHISIQPVYDXXXXXXXXXXXXXXXDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTXXXXXXXXXXXXXXXXXXXXLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQXXXXXXXXXXXXXXXXXGYQPISDHQAXXXXXXXXXXXXXXXXXXXDQTSTKKRKEXXXXXXXXXXXYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTXXXXXXXXXXXXXXXXPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK 5297
            QQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITG  SNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTTTSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQIQTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCCAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVAHNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLGNGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVSTSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPVYDYSQSQINLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDHQASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK
Sbjct:   12 QQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITGFRSNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTTTSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQIQTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCCAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVAHNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLGNGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVSTSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPVYDYSQSQINLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDHQASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK 1738          
BLAST of SMED30009581 vs. Planmine SMEST
Match: SMESG000074980.1 (SMESG000074980.1)

HSP 1 Score: 2782.67 bits (7212), Expect = 0.000e+0
Identity = 1721/1728 (99.59%), Postives = 1721/1728 (99.59%), Query Frame = 3
Query:  123 QQQFDFXXXXXXXXXXXXXXXCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITG--SNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRXXXXXXXXXXXXXXXXXYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPXXXXXXXXXXXXXHDNGSMINATAASNLRSSTIMTTTSHGSNXXXXXXXXXXXQHPIMPRTLQYQPTGQIMHQLATQPXXXXXXXXXTFKRPTNRKSSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDXXXXXXXLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISXXXXXXXXXLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLXXXXXXXXXXXXXXPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLXXXXXXXXXXXXXAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTXXXXXXVAHNEISSLLQRQEQRDPXXXXXXXXXXXXTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLXXXXXXXXXXXXQRQLLSGTVSDLGNGASHXXXXXXXXXXXXELFVPGCFIEHEKSSLQSMQXXXXXXXXXXXXXXXWNHSSPSMPVLAPQEPFCTXXXXXXXXXXXXXXDNPAVKSNHISIQPVYDXXXXXX-XXXXXXXXXDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTXXXXXXXXXXXXXXXXXXXXLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQXXXXXXXXXXXXXXXXXGYQPISDHQAXXXXXXXXXXXXXXXXXXXDQTSTKKRKEXXXXXXXXXXXYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTXXXXXXXXXXXXXXXXPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK 5297
            QQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITG  SNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTTTSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQIQTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCCAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVAHNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLGNGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVSTSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPVYDYS     NLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDHQASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK
Sbjct:   12 QQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTTLYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILSDMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSNMSNITGFRSNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRPSSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLPINMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNPISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTTTSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQIQTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAWEMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHGINVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDSTVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDFIQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSSDVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISPIKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMMLPFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLELPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSKRSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTLPTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVSKRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANISSCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMKRIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSPSAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCCAIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVAHNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHSFTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLGNGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVSTSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPVYDYSSQSQINLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVMRPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSSPLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDHQASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIYNAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWNNAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDYSNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK 1739          
The following BLAST results are available for this feature:
BLAST of SMED30009581 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30009581 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000074980.10.000e+099.71SMESG000074980.1[more]
SMESG000074980.10.000e+099.88SMESG000074980.1[more]
SMESG000074980.10.000e+099.59SMESG000074980.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009581 ID=SMED30009581|Name=SMED30009581|organism=Schmidtea mediterranea sexual|type=transcript|length=5675bp
GCAATAATCTTTGTGTAAAATGGAGCTTTAAATAATTATTATATTTATAT
TAATATTAATTAATTGAAATTGTGATAATTATCTAAAATATGAATAATGA
TGATATACATTTGAATAATATTCAGCAACAGTTTGATTTCAATATGCAAA
ACATAAATAATTCTTTAAATCAAAATGATGACAATTGTATGGACTTGTTA
GATAAGCTAACGTACGATGATAACACATCTAACACCACATTATATACTTC
TGCTAATATTGGAATGATTGATAATGAAAAATTTGCTCACGAAGTACAGT
CAGCATTAGAAAGAAATGATTTTGATCGTAAACTCACTTTATCTCTATCG
CAATCAAATAATGGGCATAAAATGGGGAAAATATTGTCAGATATGATTCA
CGACATTGAAAAAAATAAACCAATCGATGGAAAATTAAAAGACAAAATAA
ATAGTACAGTGAGATCCCAAACAACTCCCTTACGAGCAACTGTAGCTCCA
ATTAGAAATGAATCAATAGTTTGTTCCAGTAATTCAAATATGTCAAACAT
TACTGGATCGAACAAACCAGTAAAACCAGAAGCGCCACAAGATGATTTTT
TATCATTAATGTCATCGGATTGTAAAGTTCAATCTGGAACTCGCAGCTTA
CCAGCTACTCCGCCAATTAGTCAGGTTCCGAATCGTCCTTCAAGTTCACA
TTGCATACCAATTCGAAGCAATGAACAACGGAAGCGATCTGACTGCGACA
TTGATCAACAACTGCAACAACAGATTTCGTCCTGTTCTTACGGAACTCCA
CAACCGAACAATCAGCAAGCATCAATGCAATTTCTTCCGATTAACATGAA
TCAATTTGCCCAATATCAACAGTCAATGATGCCACCTAATATTGTTATAA
TGCCGTTAATGAACACACCCGAGACTACTCAAACTGCTGTATCACAATCT
AATCAAATGCTAGGCCAAACCAATCAATCCAATAATCCTATTTCATATCT
CGTTGGGCCCCACGCATTTTTCAGCATGCCAAATAACGGATCTAATCAAA
CAAACAGTACAACAACTAGCCACGATAATGGATCCATGATTAATGCAACA
GCAGCCTCTAATCTCCGTTCATCTACTATCATGACAACAACATCTCACGG
GTCGAATTTACCGAAGCTACTGCCTAAATTACCGAAACCTCAACATCCAA
TAATGCCGAGAACATTGCAATATCAACCGACAGGACAGATTATGCACCAA
TTAGCCACTCAGCCTATTCAGAACAATATTAACCAAATCCAAACATTTAA
ACGACCAACAAATCGCAAATCATCTGTCAAATCACGGCCGAATACTTCAA
GGTCCAGCAAGTCGACGAAAAAGGAAAATTCAAACAATGCCAGTTTCAAC
AATAGCAATAACAACAAGGACAATGTATTGATGGCCTGGGAAATGTCTGG
CCAATGTGGTGCTGATGATGACTCAGCTGCATCGTCATTCGTCAATGAGC
TAACCAATGGAATTGCATCAGATGCACAGCAATACTGCATTATTCCTGCT
GGACTAGATAATGGCTCAATCGATAGCTTCTGTCATGGAATCAATGTTAT
GCCTGATGTTTCAATGGTTGCAGCTAATTCAATCCCTCCAACTCAGCCGG
AATTCGATGATATATTGGATGAGTTGGTGACGATCCTTGATGTGAAATAT
GCACAATTAATCATCGAAGAGGATTTATGCTCTGATTCTACTGTTGCCAG
TATTGAGCCGGTTACATATTTTAATGCCACTGTCATCAAGGCTATCAATT
ACGGCTATTCTATCTCAGCCTGTCAACAGGCCATGATTCCTAGTTCGAAT
TGTGTTGTTATTGCACGACAATCGCCAATAATTGATTTCATCCAATCGCG
AATAAATTCTTCATCAGTTGCACCTTCCGCAACCACACCAAATGTTGACC
AACAGAGAGTTATGCAATTGCTGTATGCGCATCTCGGGCATCATTCAGAA
ATCCTTACGCCTCTACTCAAATGTTTCTTGCCATCGTCCGATGTGGCTAC
CGCACCGCCGCAGCAGTCCAGGACTGTCACGGGAACTGCGCCAGCCATTC
AGCACCACTCTCGCCCGTTGTCAGTTTGCACTCGGTTATCAGAACAAGAC
GAACTGACTGAGGATGATTTATTGGCTGACATTAGTCCAATCAAACGGGA
CCCGACACAATTGGCAAATCTCGATAAATTTCTCGAGAGTTGCCAATCGA
TCAGTCCATGTAGCAGTCTAATGCAGGAATACGACGAGGAACACGATGAA
CCGCCGTTTGATGAGGTGTGCCAGCAAAAGATGATGCTGCCATTTCAGGC
GAGCATCGAGGATAATTTGACGCTTCAAGATTTCTCCAGTTCGTCTAATC
GGCAGGACGCCTCGTGGCTACGCAAAAGCAAGCAACGTAACAAGTGGATA
ATGAACGCCAGTGTCATTCGATCGACAAAGGTGCTGGAATTACCCGCGAC
ACAAGGAAATAATGGCCCGGACAAAAGAAAAGAGAAATCTCTCAGCAAAA
AGGCCAACTATAAAACGAGTGGCACAATTTCCGTAACTTCTGAATCAAAA
TTCTGCAAACAAATCCACCAGAATTCAGCCAGTAGTAAACGGTCGGTGAA
ATATTTGGAGAAGATTCGAAAAATCAAGCGCCACAATAATGGAAACGGCG
GAGAGTCTGAAGCAATCAAGGATTCCAACTGTAACCGCTGGCAACAGTCA
GCCAATGGAGATAATTCTTCATTCGTTAGTCCAACGTTACCGACTGCCGC
ATCGACAAGTGGAACATTGAAATTGGTAATCAATTTGATTCAATCGAAAG
TCATTGCCACAACAATCACCCGGTCTCTCGATCCTCCCGCTCCACCACCG
CCATTAGTTGATATTCCGATCAGAACCGAAGTTGTATCGAAACGAATCGC
AACTCCAATGGTAAAGCAGTCACGGCGGGCAAAGGTGATAAAATCTAATC
CGGGAATCATCTCACCCCCGCCTCCTCCACCGCCGCCGCCATTGATCCAG
CGGCAAGCCAAGAAATACAACATTGAAGCCAATATCAGCAGTTGCAGCAG
CAGCACCAAACGGATATTCTGTACACGGAAAGAAGATCGGCGCAGTTCAG
CAGTATTGACAAACAACACCAGCACCGGCAACAGCAACAGCAGCACGAGT
CCAGTGAAACATCGGAAAGTATCACCGTGCAAAATGAAGCGGATTAAACA
CCACCAAATCGCAACGCCGGAAAGACCGCCATTGATTCTCAAGCTGCCGA
CAACAAAACGACAGGATAACAGTCCGTCAATGGAAACATCGAGTCCTGAA
CAACCAATAGAAACCGCCGATCGAGATGGATCGAGTCCAAGTGCCCACAA
TATGACCTGCCAACCGACAACTGGATTGTTGAAGCTGAGGCTGAAATTGA
ACAATCAATCGAACACGAATGAAACACCGGCCAAGGAAAATCAGCCATTG
TCTTGCTCGTGTTCCTCTTCCTCCTGTTGTTGCTGTTGTGCGATAATCAA
GCCGAATTACGAATTCAATTCCAATGAACGAGTGAATTTGGTTCCACCGC
CATCACTTCAGCACCGTTCACGTCCGCAACTAGCGGGATTACAATTCAGT
CCCACCCAGTCCACTAGTGACAGCGATTCTGACGTGGCCCATAATGAAAT
CAGCAGCCTCCTTCAGCGGCAAGAGCAAAGAGATCCACTATCAGCACTTG
GCAATGGTGCTGCTGGGGGTTCCACAGTTGGGTCAGTGATAGCAGCTGGT
GGCCATGCTGATTCCGTGGCAGCTACAAACCATCATTCATTCACACAATT
ACCAGTCCCATATCTTGTTGGTAGTGATCCTACGGTTTTTATCGATCCCC
ATGAGTTCGATCTTGTCGTCGTCAAAAATTCCAAGTATAAGAAAGTTTCA
CAGCGCCAGTTATTATCTGGAACAGTGAGTGACCTTGGTAACGGTGCTAG
TCATGTTGTCGACGTGGTTTCGGATTCATCAAACGTCAATGAGCTGTTTG
TTCCGGGATGCTTCATTGAGCATGAAAAATCATCCTTGCAAAGCATGCAG
TCGTCATTAGTGACGGCGGCAGCTACTGCAGCCGTGTCCACATCTTGGAA
TCATTCGAGCCCTTCAATGCCTGTATTAGCACCTCAGGAACCATTCTGCA
CATCTACTGCGGCTTCAGGAGGCAGTGTTGGCATCGGTTCTGCTGATAAT
CCTGCTGTCAAATCAAATCACATCTCTATACAGCCAGTATATGATTACAG
TCAATCACAAATCAATCTATCAAATCAACAGTCATATTCTGATACGTCGG
ATCGACTGCAACAATCACCGCTGTGTATGACAACCTCATCAAATCCACCT
CAGTCATCTCAATATTCAGCATCACAGAACGATGTAATGAGACCCGATAC
TGTCAAATCTCCAACAACCTATCAACATCAGTCATCATCATATTATCAGC
CTCAGCAATCCTATAGCAGTTCTTGCTACCTGGCGGATAATTCTATCACA
GCGGCTGGGAATCAATCAAAAACTCAAATACATTCATCGCCTCTTGCTAC
AACAGGTTCCTCCTCTCACATTCAAGATTATTCAGCATACTTCCAAAACG
CTAGTCAGATCCAGTCTCACTCGTCTGATACGGCCTCCTTTTCTTCCATA
TCTCTCACATCTTCTGGGTATCAGCCGATTTCCGACCACCAGGCGTCATC
AAAACACGGTTCATCGAAACGTTCAAGCAACAGTCGGTCTCATCATCAAT
CGGATCAGACATCAACCAAAAAACGAAAAGAACAGCCACCCCAGTCTTCA
TTGCAGTTACCATCGTATTCCAACAATGCCGACATCTACAATGCAGCTGT
CCAATACTCGAATTTGGATTACTATTCTAACGGATTTTCAGATATTATTG
GCGGTATCGATCGTGTAAAATTATATGAACAGTGGTCACGGGAGTGTAAT
TTACCTCTCAATTTCTGTGGCCAAAATCTTCCTTGGAACAATGCAATGGC
CGAGTACTGTAAGCATGCAGCCAGCCTTATGCCACAAACTGGCTCCGCTG
CTTCCTCGTCGGGATTCGGACTCGGATCCAACAGCAACCCGCTTGCGTTG
ACATCGAACCTAAACCCAGTCGGTGGAGCAATGGATTATTCAAACGATAT
TTCACATTCAGTCGAAACTTTCAAGTACCTGGACTCGTACACAGCATACG
CAATGAGCCAGCCGTATATGTACTCGACGTTCGGAGGAATCCCAAAATAA
TAGTTAATTCACCGCCGCCGCCATGCACCACCAAGTGATATAGAAATTTC
ATCTGTCAGTATTAACACTGTATGTTTTATTCCCCGAAACGCTATTTTAA
CCTGTGTGACCCTCTGTACAGATGATATGGCCAGCCTGTGTATATGTGTA
CATATATTTGCATAATTTGTAAAATTGTTCTGATGACAGTGATGAATAGG
ACATCAGTAGCAGTTAATCAATCTCTAATATATATAAATATTACTATCAA
GATCTATTATATCATTATTATTTCTAACACTATCTGATGAGCGCATTACA
AATCTGTTTATGGTTTCTAATTCTGTGGAGCAGTGCCTCTGCAGGACTTT
AGTTTGACTAGTTTATTGATGAGAT
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protein sequence of SMED30009581-orf-1

>SMED30009581-orf-1 ID=SMED30009581-orf-1|Name=SMED30009581-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1737bp
MNNDDIHLNNIQQQFDFNMQNINNSLNQNDDNCMDLLDKLTYDDNTSNTT
LYTSANIGMIDNEKFAHEVQSALERNDFDRKLTLSLSQSNNGHKMGKILS
DMIHDIEKNKPIDGKLKDKINSTVRSQTTPLRATVAPIRNESIVCSSNSN
MSNITGSNKPVKPEAPQDDFLSLMSSDCKVQSGTRSLPATPPISQVPNRP
SSSHCIPIRSNEQRKRSDCDIDQQLQQQISSCSYGTPQPNNQQASMQFLP
INMNQFAQYQQSMMPPNIVIMPLMNTPETTQTAVSQSNQMLGQTNQSNNP
ISYLVGPHAFFSMPNNGSNQTNSTTTSHDNGSMINATAASNLRSSTIMTT
TSHGSNLPKLLPKLPKPQHPIMPRTLQYQPTGQIMHQLATQPIQNNINQI
QTFKRPTNRKSSVKSRPNTSRSSKSTKKENSNNASFNNSNNNKDNVLMAW
EMSGQCGADDDSAASSFVNELTNGIASDAQQYCIIPAGLDNGSIDSFCHG
INVMPDVSMVAANSIPPTQPEFDDILDELVTILDVKYAQLIIEEDLCSDS
TVASIEPVTYFNATVIKAINYGYSISACQQAMIPSSNCVVIARQSPIIDF
IQSRINSSSVAPSATTPNVDQQRVMQLLYAHLGHHSEILTPLLKCFLPSS
DVATAPPQQSRTVTGTAPAIQHHSRPLSVCTRLSEQDELTEDDLLADISP
IKRDPTQLANLDKFLESCQSISPCSSLMQEYDEEHDEPPFDEVCQQKMML
PFQASIEDNLTLQDFSSSSNRQDASWLRKSKQRNKWIMNASVIRSTKVLE
LPATQGNNGPDKRKEKSLSKKANYKTSGTISVTSESKFCKQIHQNSASSK
RSVKYLEKIRKIKRHNNGNGGESEAIKDSNCNRWQQSANGDNSSFVSPTL
PTAASTSGTLKLVINLIQSKVIATTITRSLDPPAPPPPLVDIPIRTEVVS
KRIATPMVKQSRRAKVIKSNPGIISPPPPPPPPPLIQRQAKKYNIEANIS
SCSSSTKRIFCTRKEDRRSSAVLTNNTSTGNSNSSTSPVKHRKVSPCKMK
RIKHHQIATPERPPLILKLPTTKRQDNSPSMETSSPEQPIETADRDGSSP
SAHNMTCQPTTGLLKLRLKLNNQSNTNETPAKENQPLSCSCSSSSCCCCC
AIIKPNYEFNSNERVNLVPPPSLQHRSRPQLAGLQFSPTQSTSDSDSDVA
HNEISSLLQRQEQRDPLSALGNGAAGGSTVGSVIAAGGHADSVAATNHHS
FTQLPVPYLVGSDPTVFIDPHEFDLVVVKNSKYKKVSQRQLLSGTVSDLG
NGASHVVDVVSDSSNVNELFVPGCFIEHEKSSLQSMQSSLVTAAATAAVS
TSWNHSSPSMPVLAPQEPFCTSTAASGGSVGIGSADNPAVKSNHISIQPV
YDYSQSQINLSNQQSYSDTSDRLQQSPLCMTTSSNPPQSSQYSASQNDVM
RPDTVKSPTTYQHQSSSYYQPQQSYSSSCYLADNSITAAGNQSKTQIHSS
PLATTGSSSHIQDYSAYFQNASQIQSHSSDTASFSSISLTSSGYQPISDH
QASSKHGSSKRSSNSRSHHQSDQTSTKKRKEQPPQSSLQLPSYSNNADIY
NAAVQYSNLDYYSNGFSDIIGGIDRVKLYEQWSRECNLPLNFCGQNLPWN
NAMAEYCKHAASLMPQTGSAASSSGFGLGSNSNPLALTSNLNPVGGAMDY
SNDISHSVETFKYLDSYTAYAMSQPYMYSTFGGIPK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002056medial muscle cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1545..1560
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1545..1592
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1015..1104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1071..1104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1565..1579
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1430..1449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1021..1041
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 801..826
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 401..442