SMED30009565
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009565 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 33Note: Hover over icons to view figure legend
Alignments
SMED30009565 aligns in the following genomic locations:
Homology
BLAST of SMED30009565 vs. TrEMBL
Match: G7YN43 (Basement membrane-specific heparan sulfate proteoglycan core protein OS=Clonorchis sinensis OX=79923 GN=CLF_102536 PE=4 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.678e-33 Identity = 131/485 (27.01%), Postives = 213/485 (43.92%), Query Frame = 3 Query: 360 EPLS--VNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYA----------TGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYS-QDTVDSFQCEATLKNKTV--RRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKM-ENDKKEPVAIKKVEWIFK--ESNGELI-------PLLKLAKVVDRRD--NKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFP-EKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTS-LLSFPANSTKYFDVGQYRCQVKL-IMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEEN---IPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 EP+ + V+S N I G D + L R R +L+C A TGE ++ WY + DVPIP++ P+ P VI N + D YS +D V F C A +++ V ++ + +Q++ + F V D+ + R F + C + E E V + +W ++NGE + P L ++ ++ + L L A +C+ ++N ++D S ++L+ P I +I + P E +L Y A + Q+ C A++ TW KC D C + PT L F ANST+Y D G +RC V L + ++ L ++ + + R +PP + + ++ ++L C+ + SSPE V W+F P GK EE I T Y + + L E+SG Y C TN +GS DVT++E +R +R Sbjct: 6321 EPIGFLLKVDSPANPIYDIGG--DNHTILARVQRPFELNCRAVFTSGGDRASTGEQLPRLVWYYRQPEIPGDVPIPSQVFPVMPPRMETLVITAQENHKISIHSDAYSFRDDVAEFHCNAYMESGDVVAQKIVFVQKVAEKFNVRI-FDEESRGRVYAFVGESKTLTCYVDEISTGERVEPESYQWEVSTGDANGEWVRGDHPRQPALAISGWTSKQLVLDSLVLPKTATPTEASFEFRCIVHHNATFDTASRPFVMNLRNKPVIESIQIDREKPTEAVLAAVGVPKDEYDAAEDYQLNCKPKV-IGAEASATWQKCADSQCDEAEDLHPTGDKLFFFANSTRYIDEGFFRCLVGLQLKEYNFRLTESRIVQIKRKSPPAIYNGDAITYTTSDEMSLQCTDESSSPESTVKWTFEPSGKVPEERKDPILLGKTYEYGRIYIFAIARGQLMTEHSGKYTCTATNPFGSSSGTIDVTVTEDLHRSVR 6801
BLAST of SMED30009565 vs. TrEMBL
Match: A0A3R7EXM7 (Uncharacterized protein (Fragment) OS=Clonorchis sinensis OX=79923 GN=CSKR_561s PE=4 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.890e-33 Identity = 131/485 (27.01%), Postives = 213/485 (43.92%), Query Frame = 3 Query: 360 EPLS--VNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYA----------TGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYS-QDTVDSFQCEATLKNKTV--RRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKM-ENDKKEPVAIKKVEWIFK--ESNGELI-------PLLKLAKVVDRRD--NKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFP-EKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTS-LLSFPANSTKYFDVGQYRCQVKL-IMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEEN---IPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 EP+ + V+S N I G D + L R R +L+C A TGE ++ WY + DVPIP++ P+ P VI N + D YS +D V F C A +++ V ++ + +Q++ + F V D+ + R F + C + E E V + +W ++NGE + P L ++ ++ + L L A +C+ ++N ++D S ++L+ P I +I + P E +L Y A + Q+ C A++ TW KC D C + PT L F ANST+Y D G +RC V L + ++ L ++ + + R +PP + + ++ ++L C+ + SSPE V W+F P GK EE I T Y + + L E+SG Y C TN +GS DVT++E +R +R Sbjct: 1261 EPIGFLLKVDSPANPIYDIGG--DNHTILARVQRPFELNCRAVFTSGGDRASTGEQLPRLVWYYRQPEIPGDVPIPSQVFPVMPPRMETLVITAQENHKISIHSDAYSFRDDVAEFHCNAYMESGDVVAQKIVFVQKVAEKFNVRI-FDEESRGRVYAFVGESKTLTCYVDEISTGERVEPESYQWEVSTGDANGEWVRGDHPRQPALAISGWTSKQLVLDSLVLPKTATPTEASFEFRCIVHHNATFDTASRPFVMNLRNKPVIESIQIDREKPTEAVLAAVGVPKDEYDAAEDYQLNCKPKV-IGAEASATWQKCADSQCDEAEDLHPTGDKLFFFANSTRYIDEGFFRCLVGLQLKEYNFRLTESRIVQIKRKSPPAIYNGDAITYTTSDEMSLQCTDESSSPESTVKWTFEPSGKVPEERKDPILLGKTYEYGRIYIFAIARGQLMTEHSGKYTCTATNPFGSSSGTIDVTVTEDLHRSVR 1741
BLAST of SMED30009565 vs. TrEMBL
Match: A0A4S2KYA6 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_010460 PE=4 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.527e-31 Identity = 122/463 (26.35%), Postives = 199/463 (42.98%), Query Frame = 3 Query: 420 ADLLSTLVRSNRKLQLDCYA----------TGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYS-QDTVDSFQCEATLKNKTV--RRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKM-ENDKKEPVAIKKVEWIFK--ESNGELI-------PLLKLAKVVDRRD--NKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFP-EKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTS-LLSFPANSTKYFDVGQYRCQVKL-IMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEEN---IPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 D + L R R +L+C A TGE ++ WY + DVPIP++ P+ P VI N + D YS +D V F C A +++ V ++ + +Q++ + F V D+ + R F + C + E E V + +W ++NGE I P L + ++ + L L A +C+ ++N ++D S ++L+ P I +I + P E +L Y A + Q+ C A++ TW KC D C + P L F ANST+Y D G +RC V L + ++ L ++ + + R +PP + + ++ ++L C+ + SSPE + W+F P GK E I T Y + + L E+SG Y C TN +GS DVT++E +R R Sbjct: 6338 GDNHTILARVQRPFELNCRAVFISGGDRASTGEQLPRLVWYYRQPEIPGDVPIPSQVFPVMPPRMETLVITAQENHKISIYSDAYSFRDDVAEFHCNAYMESGDVVAQKIVFVQKVAEKFNVRI-FDEESRGRVYAFVGESKTLTCYVDEISTGERVEPESYQWEVSTGDANGEWIRGDHPRQPALAIKGWTSKQLVLDSLVLPKTATPTEASFEFRCIVHHNATFDTASRPFVMNLRNKPVIESIQIDREKPTEAVLAAVGVPKDEYDAAEDYQLSCKPKV-IGAEASATWQKCADSQCDEAEDLHPIGDKLFFFANSTRYLDEGFFRCLVGLQLKEYNFRLTESRIVQIKRKSPPAIYNGDAITYTTSDEMSLQCTDESSSPESTIKWTFEPSGKVPAERKDPILLGKTYEYGRIYIFAIARGQLMTEHSGKYTCTATNPFGSSSGTIDVTVTEDLHRSAR 6798
BLAST of SMED30009565 vs. TrEMBL
Match: A0A075A363 (Uncharacterized protein OS=Opisthorchis viverrini OX=6198 GN=T265_00466 PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.659e-31 Identity = 129/482 (26.76%), Postives = 209/482 (43.36%), Query Frame = 3 Query: 360 EPLS--VNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYA----------TGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYS-QDTVDSFQCEATLKNKTV--RRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKM-ENDKKEPVAIKKVEWIFK--ESNGELI----PLLKLAKVVDRRDNKLYLANITLS-----FGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFP-EKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTS-LLSFPANSTKYFDVGQYRCQVKL-IMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEEN---IPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNR 1706 EP+ + V+S+ N I G D + L R R +L+C A TGE ++ WY + DVPIP++ P+ P VI N + D YS +D V F C A +++ V ++ + +Q++ + F V D+ + R F + C + E E V + +W ++N E I P + + + +L L ++ L A +C+ +N ++D S ++L+ P I +I + P E +L Y A + Q+ C A++ TW KC D C + P L F ANST+Y D G +RC V L + ++ L ++ + + R +PP + + + ++L C+ + SSPE V W+F P GK EE I T Y + + L E+SG Y C TN +GS DVT++E +R Sbjct: 6270 EPIGFLLKVDSSANPIYDIGG--DNHTILARVQRPFELNCRAVFTSGGDRTSTGEQLPRLVWYYRQPEIPGDVPIPSQVFPVMPPRMETLVITAQENHKISIHSDAYSFRDDVAEFHCNAYMESGDVVAQKIVFVQKVAEKFNVRI-FDEESRGRVYAFVGESKTLTCYVDEISTGERVEPESYQWEVSTGDANNEWIRGDHPRQPASAISGWKSKQLVLDSLVLPKTATPTEASFEFRCIVNHNATFDTASRPFVMNLRNKPVIESIQIDREKPTEAVLAAVGVPMDEYDAAEDYQLSCKPKV-IGAEASATWQKCADSQCDEAEDLHPIGDKLFFFANSTRYIDEGFFRCLVGLQLKEYNFRLTESRIVQIKRKSPPAIYNGDAITYTTNDEMSLQCTDESSSPESTVKWTFEPSGKVPEERKDPILLGKTYEYGRIYIFAIARGQLMTEHSGKYTCTATNPFGSSSGTIDVTVTEDLHR 6747
BLAST of SMED30009565 vs. TrEMBL
Match: A0A1S8WHH9 (Immunoglobulin domain protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_10342 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.683e-30 Identity = 129/482 (26.76%), Postives = 209/482 (43.36%), Query Frame = 3 Query: 360 EPLS--VNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYA----------TGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYS-QDTVDSFQCEATLKNKTV--RRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKM-ENDKKEPVAIKKVEWIFK--ESNGELI----PLLKLAKVVDRRDNKLYLANITLS-----FGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFP-EKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTS-LLSFPANSTKYFDVGQYRCQVKL-IMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEEN---IPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNR 1706 EP+ + V+S+ N I G D + L R R +L+C A TGE ++ WY + DVPIP++ P+ P VI N + D YS +D V F C A +++ V ++ + +Q++ + F V D+ + R F + C + E E V + +W ++N E I P + + + +L L ++ L A +C+ +N ++D S ++L+ P I +I + P E +L Y A + Q+ C A++ TW KC D C + P L F ANST+Y D G +RC V L + ++ L ++ + + R +PP + + + ++L C+ + SSPE V W+F P GK EE I T Y + + L E+SG Y C TN +GS DVT++E +R Sbjct: 4626 EPIGFLLKVDSSANPIYDIGG--DNHTILARVQRPFELNCRAVFTSGGDRTSTGEQLPRLVWYYRQPEIPGDVPIPSQVFPVMPPRMETLVITAQENHKISIHSDAYSFRDDVAEFHCNAYMESGDVVAQKIVFVQKVAEKFNVRI-FDEESRGRVYAFVGESKTLTCYVDEISTGERVEPESYQWEVSTGDANNEWIRGDHPRQPASAISGWKSKQLVLDSLVLPKTATPTEASFEFRCIVNHNATFDTASRPFVMNLRNKPVIESIQIDREKPTEAVLAAVGVPMDEYDAAEDYQLSCKPKV-IGAEASATWQKCADSQCDEAEDLHPIGDKLFFFANSTRYIDEGFFRCLVGLQLKEYNFRLTESRIVQIKRKSPPAIYNGDAITYTTNDEMSLQCTDESSSPESTVKWTFEPSGKVPEERKDPILLGKTYEYGRIYIFAIARGQLMTEHSGKYTCTATNPFGSSSGTIDVTVTEDLHR 5103
BLAST of SMED30009565 vs. Planmine SMEST
Match: SMESG000055070.1 (SMESG000055070.1) HSP 1 Score: 1017.3 bits (2629), Expect = 0.000e+0 Identity = 494/506 (97.63%), Postives = 497/506 (98.22%), Query Frame = 3 Query: 198 GNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 G + +KNENSVTIMFPVEQS ISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMY+ALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNL CSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR Sbjct: 5310 GKPIPKEWIQKNENSVTIMFPVEQSSISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYNALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLLCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 5815 HSP 2 Score: 159.073 bits (401), Expect = 2.022e-40 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNINGKPIPKEWIQK 229 AQCFAT GAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETT+IYIGNINGKPIPKEWIQK Sbjct: 5245 AQCFATKGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTQIYIGNINGKPIPKEWIQK 5320 HSP 3 Score: 53.5286 bits (127), Expect = 3.767e-9 Identity = 35/130 (26.92%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 228 KNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIER 605 KN+NSV ++ P+ +++G+Y C A+NK+GTD+ +++K + P+S+N+ + I+ G + S++ N ++DC Y+ G+P + W++ + RK+P + K V E+ Sbjct: 2933 KNKNSVELILPINSENPLKFIGSYECKAENKFGTDHRIVDVKYVQRYPPISINIITKSGPISKESGMKYIKSSIGLLN---EIDCLYSGGKPPLVADWFLEKNSEM-------RKLPRGDSVKKYKVFEK 3052 HSP 4 Score: 26.9498 bits (58), Expect = 3.767e-9 Identity = 16/66 (24.24%), Postives = 29/66 (43.94%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNING 199 +C Y S V ED +PKL + ++ + + + L CL++ E T I + ++G Sbjct: 2859 GRCIVIVQGKKYFSKYFEVFTNEDALRKPKLIANYSVDEKTGIIKALECLDQSGEMTNIQVTFLSG 2924 HSP 5 Score: 42.3578 bits (98), Expect = 1.099e-7 Identity = 63/267 (23.60%), Postives = 109/267 (40.82%), Query Frame = 3 Query: 171 LKYILEILMGNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIE-RITN--KHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLR-QQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKL 947 L YI L G K N + +F + +Y G Y C A +KYG+++ TL+ K F+PL V+V S R + ++ R +++DC + G+P + WY + ++ K N +K N++ +I N K+ +T + +D + + V Q + V D +S +Q D+ QA K+ +W F +SN E P+ KLA+ VD++ ++ Sbjct: 3242 LDYINRTLAGGVLN-----KKRNHIEYVFTTDSKSTLKYDGIYRCNATSKYGSNSITLDTKIKPVFKPLIVSVYSKDVNFTVKDKRN---TAILPEYRVIEIDCLHFGGQPPTDVTWYQIKDSQEVELLKSEIKDNFNVYQKQPNILTVKILNMKKNSNMTLNCVVKDA------NGVMISSPV---FLTQSPSGVRFVVAGLDGDSSFNPKQGSMDRKLQASIIDAKTGKDLSGGFTFKWYFLQSNKEEYPIDKLAEKVDQKGGEI 3491 HSP 6 Score: 33.113 bits (74), Expect = 1.099e-7 Identity = 21/65 (32.31%), Postives = 31/65 (47.69%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNIN 196 AQC NG+ N S + V ED RPKL T + ++L C++ T+E+ + IN Sbjct: 3182 AQCRVNNGSVNDVSKPFFIHVDEDELKRPKLFLKPTFEGELNAVKRLDCIDRSEATSEMTLDYIN 3246
BLAST of SMED30009565 vs. Planmine SMEST
Match: SMESG000055070.1 (SMESG000055070.1) HSP 1 Score: 1017.3 bits (2629), Expect = 0.000e+0 Identity = 494/506 (97.63%), Postives = 497/506 (98.22%), Query Frame = 3 Query: 198 GNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 G + +KNENSVTIMFPVEQS ISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMY+ALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNL CSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR Sbjct: 5008 GKPIPKEWIQKNENSVTIMFPVEQSSISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYNALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLLCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 5513 HSP 2 Score: 159.073 bits (401), Expect = 2.030e-40 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNINGKPIPKEWIQK 229 AQCFAT GAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETT+IYIGNINGKPIPKEWIQK Sbjct: 4943 AQCFATKGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTQIYIGNINGKPIPKEWIQK 5018 HSP 3 Score: 53.5286 bits (127), Expect = 3.595e-9 Identity = 35/130 (26.92%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 228 KNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIER 605 KN+NSV ++ P+ +++G+Y C A+NK+GTD+ +++K + P+S+N+ + I+ G + S++ N ++DC Y+ G+P + W++ + RK+P + K V E+ Sbjct: 2933 KNKNSVELILPINSENPLKFIGSYECKAENKFGTDHRIVDVKYVQRYPPISINIITKSGPISKESGMKYIKSSIGLLN---EIDCLYSGGKPPLVADWFLEKNSEM-------RKLPRGDSVKKYKVFEK 3052 HSP 4 Score: 26.9498 bits (58), Expect = 3.595e-9 Identity = 16/66 (24.24%), Postives = 29/66 (43.94%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNING 199 +C Y S V ED +PKL + ++ + + + L CL++ E T I + ++G Sbjct: 2859 GRCIVIVQGKKYFSKYFEVFTNEDALRKPKLIANYSVDEKTGIIKALECLDQSGEMTNIQVTFLSG 2924 HSP 5 Score: 42.3578 bits (98), Expect = 1.058e-7 Identity = 63/267 (23.60%), Postives = 109/267 (40.82%), Query Frame = 3 Query: 171 LKYILEILMGNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIE-RITN--KHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLR-QQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKL 947 L YI L G K N + +F + +Y G Y C A +KYG+++ TL+ K F+PL V+V S R + ++ R +++DC + G+P + WY + ++ K N +K N++ +I N K+ +T + +D + + V Q + V D +S +Q D+ QA K+ +W F +SN E P+ KLA+ VD++ ++ Sbjct: 3242 LDYINRTLAGGVLN-----KKRNHIEYVFTTDSKSTLKYDGIYRCNATSKYGSNSITLDTKIKPVFKPLIVSVYSKDVNFTVKDKRN---TAILPEYRVIEIDCLHFGGQPPTDVTWYQIKDSQEVELLKSEIKDNFNVYQKQPNILTVKILNMKKNSNMTLNCVVKDA------NGVMISSPV---FLTQSPSGVRFVVAGLDGDSSFNPKQGSMDRKLQASIIDAKTGKDLSGGFTFKWYFLQSNKEEYPIDKLAEKVDQKGGEI 3491 HSP 6 Score: 33.113 bits (74), Expect = 1.058e-7 Identity = 21/65 (32.31%), Postives = 31/65 (47.69%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNIN 196 AQC NG+ N S + V ED RPKL T + ++L C++ T+E+ + IN Sbjct: 3182 AQCRVNNGSVNDVSKPFFIHVDEDELKRPKLFLKPTFEGELNAVKRLDCIDRSEATSEMTLDYIN 3246
BLAST of SMED30009565 vs. Planmine SMEST
Match: SMESG000055070.1 (SMESG000055070.1) HSP 1 Score: 1017.3 bits (2629), Expect = 0.000e+0 Identity = 494/506 (97.63%), Postives = 497/506 (98.22%), Query Frame = 3 Query: 198 GNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 G + +KNENSVTIMFPVEQS ISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMY+ALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNL CSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR Sbjct: 5310 GKPIPKEWIQKNENSVTIMFPVEQSSISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYNALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLLCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 5815 HSP 2 Score: 159.073 bits (401), Expect = 2.022e-40 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNINGKPIPKEWIQK 229 AQCFAT GAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETT+IYIGNINGKPIPKEWIQK Sbjct: 5245 AQCFATKGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTQIYIGNINGKPIPKEWIQK 5320 HSP 3 Score: 53.5286 bits (127), Expect = 3.767e-9 Identity = 35/130 (26.92%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 228 KNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIER 605 KN+NSV ++ P+ +++G+Y C A+NK+GTD+ +++K + P+S+N+ + I+ G + S++ N ++DC Y+ G+P + W++ + RK+P + K V E+ Sbjct: 2933 KNKNSVELILPINSENPLKFIGSYECKAENKFGTDHRIVDVKYVQRYPPISINIITKSGPISKESGMKYIKSSIGLLN---EIDCLYSGGKPPLVADWFLEKNSEM-------RKLPRGDSVKKYKVFEK 3052 HSP 4 Score: 26.9498 bits (58), Expect = 3.767e-9 Identity = 16/66 (24.24%), Postives = 29/66 (43.94%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNING 199 +C Y S V ED +PKL + ++ + + + L CL++ E T I + ++G Sbjct: 2859 GRCIVIVQGKKYFSKYFEVFTNEDALRKPKLIANYSVDEKTGIIKALECLDQSGEMTNIQVTFLSG 2924 HSP 5 Score: 42.3578 bits (98), Expect = 1.099e-7 Identity = 63/267 (23.60%), Postives = 109/267 (40.82%), Query Frame = 3 Query: 171 LKYILEILMGNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIE-RITN--KHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLR-QQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKL 947 L YI L G K N + +F + +Y G Y C A +KYG+++ TL+ K F+PL V+V S R + ++ R +++DC + G+P + WY + ++ K N +K N++ +I N K+ +T + +D + + V Q + V D +S +Q D+ QA K+ +W F +SN E P+ KLA+ VD++ ++ Sbjct: 3242 LDYINRTLAGGVLN-----KKRNHIEYVFTTDSKSTLKYDGIYRCNATSKYGSNSITLDTKIKPVFKPLIVSVYSKDVNFTVKDKRN---TAILPEYRVIEIDCLHFGGQPPTDVTWYQIKDSQEVELLKSEIKDNFNVYQKQPNILTVKILNMKKNSNMTLNCVVKDA------NGVMISSPV---FLTQSPSGVRFVVAGLDGDSSFNPKQGSMDRKLQASIIDAKTGKDLSGGFTFKWYFLQSNKEEYPIDKLAEKVDQKGGEI 3491 HSP 6 Score: 33.113 bits (74), Expect = 1.099e-7 Identity = 21/65 (32.31%), Postives = 31/65 (47.69%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNIN 196 AQC NG+ N S + V ED RPKL T + ++L C++ T+E+ + IN Sbjct: 3182 AQCRVNNGSVNDVSKPFFIHVDEDELKRPKLFLKPTFEGELNAVKRLDCIDRSEATSEMTLDYIN 3246
BLAST of SMED30009565 vs. Planmine SMEST
Match: SMESG000055070.1 (SMESG000055070.1) HSP 1 Score: 1017.3 bits (2629), Expect = 0.000e+0 Identity = 494/506 (97.63%), Postives = 497/506 (98.22%), Query Frame = 3 Query: 198 GNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 G + +KNENSVTIMFPVEQS ISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMY+ALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNL CSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR Sbjct: 5214 GKPIPKEWIQKNENSVTIMFPVEQSSISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYNALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLLCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 5719 HSP 2 Score: 159.073 bits (401), Expect = 2.113e-40 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNINGKPIPKEWIQK 229 AQCFAT GAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETT+IYIGNINGKPIPKEWIQK Sbjct: 5149 AQCFATKGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTQIYIGNINGKPIPKEWIQK 5224 HSP 3 Score: 53.5286 bits (127), Expect = 3.620e-9 Identity = 35/130 (26.92%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 228 KNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIER 605 KN+NSV ++ P+ +++G+Y C A+NK+GTD+ +++K + P+S+N+ + I+ G + S++ N ++DC Y+ G+P + W++ + RK+P + K V E+ Sbjct: 2933 KNKNSVELILPINSENPLKFIGSYECKAENKFGTDHRIVDVKYVQRYPPISINIITKSGPISKESGMKYIKSSIGLLN---EIDCLYSGGKPPLVADWFLEKNSEM-------RKLPRGDSVKKYKVFEK 3052 HSP 4 Score: 26.9498 bits (58), Expect = 3.620e-9 Identity = 16/66 (24.24%), Postives = 29/66 (43.94%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNING 199 +C Y S V ED +PKL + ++ + + + L CL++ E T I + ++G Sbjct: 2859 GRCIVIVQGKKYFSKYFEVFTNEDALRKPKLIANYSVDEKTGIIKALECLDQSGEMTNIQVTFLSG 2924 HSP 5 Score: 42.3578 bits (98), Expect = 1.048e-7 Identity = 63/267 (23.60%), Postives = 109/267 (40.82%), Query Frame = 3 Query: 171 LKYILEILMGNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIE-RITN--KHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLR-QQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKL 947 L YI L G K N + +F + +Y G Y C A +KYG+++ TL+ K F+PL V+V S R + ++ R +++DC + G+P + WY + ++ K N +K N++ +I N K+ +T + +D + + V Q + V D +S +Q D+ QA K+ +W F +SN E P+ KLA+ VD++ ++ Sbjct: 3242 LDYINRTLAGGVLN-----KKRNHIEYVFTTDSKSTLKYDGIYRCNATSKYGSNSITLDTKIKPVFKPLIVSVYSKDVNFTVKDKRN---TAILPEYRVIEIDCLHFGGQPPTDVTWYQIKDSQEVELLKSEIKDNFNVYQKQPNILTVKILNMKKNSNMTLNCVVKDA------NGVMISSPV---FLTQSPSGVRFVVAGLDGDSSFNPKQGSMDRKLQASIIDAKTGKDLSGGFTFKWYFLQSNKEEYPIDKLAEKVDQKGGEI 3491 HSP 6 Score: 33.113 bits (74), Expect = 1.048e-7 Identity = 21/65 (32.31%), Postives = 31/65 (47.69%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNIN 196 AQC NG+ N S + V ED RPKL T + ++L C++ T+E+ + IN Sbjct: 3182 AQCRVNNGSVNDVSKPFFIHVDEDELKRPKLFLKPTFEGELNAVKRLDCIDRSEATSEMTLDYIN 3246
BLAST of SMED30009565 vs. Planmine SMEST
Match: SMESG000055070.1 (SMESG000055070.1) HSP 1 Score: 1017.3 bits (2629), Expect = 0.000e+0 Identity = 494/506 (97.63%), Postives = 497/506 (98.22%), Query Frame = 3 Query: 198 GNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYSALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLPCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 1715 G + +KNENSVTIMFPVEQS ISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMY+ALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNL CSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR Sbjct: 5208 GKPIPKEWIQKNENSVTIMFPVEQSSISEYLGTYYCFAKNKYGTDNTTLEIKGFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDCYATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIERITNKHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLRQQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKLYLANITLSFGAYIRSQCVAYYNDSYDVISAEVSLHLQESPKIYTIYFKQNFPEKILHMAAPYNLMYNALKKTQIECIANTSTNAKSKITWLKCKDKNCQNTSEASPTSLLSFPANSTKYFDVGQYRCQVKLIMDFKEVLNQTVTLYVDRSAPPKEVAKQLLRLSKTNNLNLLCSSDFSSPEGNVTWSFIPLGKAKEENIPKNATINSSERYYNLVIKRPLKLEYSGLYICRITNEYGSGGYKFDVTISEGPNRWLR 5713 HSP 2 Score: 159.073 bits (401), Expect = 2.113e-40 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNINGKPIPKEWIQK 229 AQCFAT GAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETT+IYIGNINGKPIPKEWIQK Sbjct: 5143 AQCFATKGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTQIYIGNINGKPIPKEWIQK 5218 HSP 3 Score: 53.5286 bits (127), Expect = 3.649e-9 Identity = 35/130 (26.92%), Postives = 69/130 (53.08%), Query Frame = 3 Query: 228 KNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIER 605 KN+NSV ++ P+ +++G+Y C A+NK+GTD+ +++K + P+S+N+ + I+ G + S++ N ++DC Y+ G+P + W++ + RK+P + K V E+ Sbjct: 2933 KNKNSVELILPINSENPLKFIGSYECKAENKFGTDHRIVDVKYVQRYPPISINIITKSGPISKESGMKYIKSSIGLLN---EIDCLYSGGKPPLVADWFLEKNSEM-------RKLPRGDSVKKYKVFEK 3052 HSP 4 Score: 26.9498 bits (58), Expect = 3.649e-9 Identity = 16/66 (24.24%), Postives = 29/66 (43.94%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNING 199 +C Y S V ED +PKL + ++ + + + L CL++ E T I + ++G Sbjct: 2859 GRCIVIVQGKKYFSKYFEVFTNEDALRKPKLIANYSVDEKTGIIKALECLDQSGEMTNIQVTFLSG 2924 HSP 5 Score: 42.3578 bits (98), Expect = 1.023e-7 Identity = 63/267 (23.60%), Postives = 109/267 (40.82%), Query Frame = 3 Query: 171 LKYILEILMGNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYCFAKNKYGTDNTTLEIK---GFEPLSVNVNSTINKINPNPGRADLLSTLVRSNRKLQLDC-YATGEPNVKIQWYIFTEKYVPDVPIPARKIPLNPNEKSQNVIE-RITN--KHYRLTRDYYSQDTVDSFQCEATLKNKTVRRNIKIQEIQDIFKVNYETDQGNSLR-QQVFADKPFQAWCKMENDKKEPVAIKKVEWIFKESNGELIPLLKLAKVVDRRDNKL 947 L YI L G K N + +F + +Y G Y C A +KYG+++ TL+ K F+PL V+V S R + ++ R +++DC + G+P + WY + ++ K N +K N++ +I N K+ +T + +D + + V Q + V D +S +Q D+ QA K+ +W F +SN E P+ KLA+ VD++ ++ Sbjct: 3242 LDYINRTLAGGVLN-----KKRNHIEYVFTTDSKSTLKYDGIYRCNATSKYGSNSITLDTKIKPVFKPLIVSVYSKDVNFTVKDKRN---TAILPEYRVIEIDCLHFGGQPPTDVTWYQIKDSQEVELLKSEIKDNFNVYQKQPNILTVKILNMKKNSNMTLNCVVKDA------NGVMISSPV---FLTQSPSGVRFVVAGLDGDSSFNPKQGSMDRKLQASIIDAKTGKDLSGGFTFKWYFLQSNKEEYPIDKLAEKVDQKGGEI 3491 HSP 6 Score: 33.113 bits (74), Expect = 1.023e-7 Identity = 21/65 (32.31%), Postives = 31/65 (47.69%), Query Frame = 2 Query: 2 AQCFATNGAHNYTSTRISVTVVEDVDNRPKLHFSKTIGKLSDFPEKLLCLNERPETTEIYIGNIN 196 AQC NG+ N S + V ED RPKL T + ++L C++ T+E+ + IN Sbjct: 3182 AQCRVNNGSVNDVSKPFFIHVDEDELKRPKLFLKPTFEGELNAVKRLDCIDRSEATSEMTLDYIN 3246 The following BLAST results are available for this feature:
BLAST of SMED30009565 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30009565 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30009565 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30009565 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30009565 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30009565 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009565 ID=SMED30009565|Name=SMED30009565|organism=Schmidtea mediterranea sexual|type=transcript|length=1816bpback to top protein sequence of SMED30009565-orf-1 >SMED30009565-orf-1 ID=SMED30009565-orf-1|Name=SMED30009565-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=523bp MNDQKRLKYILEILMGNQFQRNGFKKNENSVTIMFPVEQSFISEYLGTYYback to top Annotated Terms
The following terms have been associated with this transcript:
|