SMED30009480
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009480 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Alignments
SMED30009480 aligns in the following genomic locations:
Homology
BLAST of SMED30009480 vs. UniProt/SwissProt
Match: sp|P04185|UROK_PIG (Urokinase-type plasminogen activator OS=Sus scrofa OX=9823 GN=PLAU PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.169e-6 Identity = 31/91 (34.07%), Postives = 43/91 (47.25%), Query Frame = 3 Query: 324 DSSRPCRSTENGWDYDGPVNISSNNKSCKPWKIGDV------KYKLDALQIKDFNENFCRNPNNRSSVWCYVDVN---TTEPCTVPLCLAN 569 D+S+ C NG Y G N ++ + C PW V ++ DALQ+ N+CRNP+N+ WCYV V + C VP C Sbjct: 67 DTSQTCFEG-NGHSYRGKANTNTGGRPCLPWNSATVLLNTYHAHRPDALQLGLGKHNYCRNPDNQRRPWCYVQVGLKQLVQECMVPNCSGG 156
BLAST of SMED30009480 vs. Ensembl Nematostella
Match: EDO43993 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RX97]) HSP 1 Score: 53.9138 bits (128), Expect = 3.637e-7 Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 3 Query: 357 GWDYDGPVNISSNNKSCKPWKIGDVKYKLDALQIKDFNENFCRNPNNRSSV-WCYVDVNTTEPCTVPLCLANPEA 578 G DY G +N++ C WK D YKL + NFCRNP + WCYVD NT E C +P C +A Sbjct: 137 GEDYIGRLNVTKYGMPCLSWKSNDPVYKL--------SHNFCRNPRGQHEAPWCYVDKNTYEYCVIPKCSEASDA 203
BLAST of SMED30009480 vs. Ensembl Medaka
Match: hgfb (hepatocyte growth factor [Source:NCBI gene;Acc:101167035]) HSP 1 Score: 54.299 bits (129), Expect = 9.920e-7 Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 3 Query: 354 NGWDYDGPVNISSNNKSCKPWKIGDVKYKL---DALQIKDFNENFCRNPNNRSSVWCY-VDVNTT-EPCTVPLCLANPEAN 581 NG DY GP++ + + K C+ W + + L K ++N+CRNPN R WC+ D NT E CT+ +C P++N Sbjct: 195 NGEDYRGPMDHTESGKECQRWDLDEPHKHLFHPKRYPDKGLDDNYCRNPNGRHRPWCFTTDPNTPWEYCTIKVCETPPDSN 275
BLAST of SMED30009480 vs. Ensembl Medaka
Match: hgfb (hepatocyte growth factor [Source:NCBI gene;Acc:101167035]) HSP 1 Score: 54.299 bits (129), Expect = 1.044e-6 Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 3 Query: 354 NGWDYDGPVNISSNNKSCKPWKIGDVKYKL---DALQIKDFNENFCRNPNNRSSVWCY-VDVNTT-EPCTVPLCLANPEAN 581 NG DY GP++ + + K C+ W + + L K ++N+CRNPN R WC+ D NT E CT+ +C P++N Sbjct: 201 NGEDYRGPMDHTESGKECQRWDLDEPHKHLFHPKRYPDKGLDDNYCRNPNGRHRPWCFTTDPNTPWEYCTIKVCETPPDSN 281
BLAST of SMED30009480 vs. Planmine SMEST
Match: SMESG000063980.1 (SMESG000063980.1) HSP 1 Score: 1197.19 bits (3096), Expect = 0.000e+0 Identity = 593/597 (99.33%), Postives = 593/597 (99.33%), Query Frame = 3 Query: 552 PLCLANPEANYCIPIPIRDFTACPILFQNKDLFKQNVSKEFVFCCLKDQIHTEYLPIIEGCLLSIISTKFLQPKFSLCPPGYYYKRIFNLLLEDKSIYQCCRFSVVKASYSLWLYQSVLDENKNNSISVFGSLTNSSCKPVHDFYTEVIEYFNTFEQEYRFIEYGDRLCFYYLNTMTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLXXXXXXXXXXXXXAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKDF 2342 P ANPEANYCIPIPIRDFTACPILFQNKDLFKQNVSKEFVFCCLKDQIHTEYLPIIEGCLLSIISTKFLQPKFSLCPPGYYYKRIFNLLLEDKSIYQCCRFSVVKASYSLWLYQSVLDENKNNSISVFGSLTNSSCKPVHDFYTEVIEYFNTFEQEYRFIEYGDRLCFYYLNTMTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSK F Sbjct: 274 PEIAANPEANYCIPIPIRDFTACPILFQNKDLFKQNVSKEFVFCCLKDQIHTEYLPIIEGCLLSIISTKFLQPKFSLCPPGYYYKRIFNLLLEDKSIYQCCRFSVVKASYSLWLYQSVLDENKNNSISVFGSLTNSSCKPVHDFYTEVIEYFNTFEQEYRFIEYGDRLCFYYLNTMTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKGF 870 HSP 2 Score: 950.273 bits (2455), Expect = 0.000e+0 Identity = 485/485 (100.00%), Postives = 485/485 (100.00%), Query Frame = 2 Query: 2333 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRXXXXXXXXXXXXXXFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 3787 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP Sbjct: 868 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 1352
BLAST of SMED30009480 vs. Planmine SMEST
Match: SMESG000063980.1 (SMESG000063980.1) HSP 1 Score: 1188.71 bits (3074), Expect = 0.000e+0 Identity = 591/593 (99.66%), Postives = 592/593 (99.83%), Query Frame = 3 Query: 564 ANPEANYCIPIPIRDFTACPILFQNKDLFKQNVSKEFVFCCLKDQIHTEYLPIIEGCLLSIISTKFLQPKFSLCPPGYYYKRIFNLLLEDKSIYQCCRFSVVKASYSLWLYQSVLDENKNNSISVFGSLTNSSCKPVHDFYTEVIEYFNTFEQEYRFIEYGDRLCFYYLNTMTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLXXXXXXXXXXXXXAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKDF 2342 +NPEANYCIPIPIRDFTACPILFQNKDLFKQNVSKEFVFCCLKDQIHTEYLPIIEGCLLSIISTKFLQPKFSLCPPGYYYKRIFNLLLEDKSIYQCCRFSVVKASYSLWLYQSVLDENKNNSISVFGSLTNSSCKPVHDFYTEVIEYFNTFEQEYRFIEYGDRLCFYYLNTMTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSK F Sbjct: 32 SNPEANYCIPIPIRDFTACPILFQNKDLFKQNVSKEFVFCCLKDQIHTEYLPIIEGCLLSIISTKFLQPKFSLCPPGYYYKRIFNLLLEDKSIYQCCRFSVVKASYSLWLYQSVLDENKNNSISVFGSLTNSSCKPVHDFYTEVIEYFNTFEQEYRFIEYGDRLCFYYLNTMTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKGF 624 HSP 2 Score: 945.266 bits (2442), Expect = 0.000e+0 Identity = 485/485 (100.00%), Postives = 485/485 (100.00%), Query Frame = 2 Query: 2333 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRXXXXXXXXXXXXXXFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 3787 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP Sbjct: 622 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 1106
BLAST of SMED30009480 vs. Planmine SMEST
Match: SMESG000063980.1 (SMESG000063980.1) HSP 1 Score: 946.806 bits (2446), Expect = 0.000e+0 Identity = 485/485 (100.00%), Postives = 485/485 (100.00%), Query Frame = 2 Query: 2333 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRXXXXXXXXXXXXXXFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 3787 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP Sbjct: 420 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 904 HSP 2 Score: 841.647 bits (2173), Expect = 0.000e+0 Identity = 421/422 (99.76%), Postives = 421/422 (99.76%), Query Frame = 3 Query: 1077 MTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLXXXXXXXXXXXXXAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKDF 2342 MTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSK F Sbjct: 1 MTDRMTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKGF 422
BLAST of SMED30009480 vs. Planmine SMEST
Match: SMESG000063980.1 (SMESG000063980.1) HSP 1 Score: 946.421 bits (2445), Expect = 0.000e+0 Identity = 485/485 (100.00%), Postives = 485/485 (100.00%), Query Frame = 2 Query: 2333 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRXXXXXXXXXXXXXXFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 3787 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP Sbjct: 416 KGFFPLKNYEKFPLIGLVAIGGKCPNVDNKIYSFQNAIEEVFEIERAKLNSDELYNFIKLSLIIDLNSKPNFVRITYKFCIYRLSKSQNSSINLLGIIKPLQSKCPINFYEEIHIISINRRENFHSIFPYFFKESNSSNKVYASFCFQRINAEINFFLLKYSSLCFFSYKTCPTGYKSELNDLLSLSKNNVEWESLILCCNKNREVIQNDSPHISMETPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSPISWPSGNYMTIAINNYCPPYFTLLQHKLTGLCMRNEINTEQIEFPSGQYCLLSHLGLRCPLSHGENPVRNFINIENKLYLICCSQSIDMIFNIYIPEGKIFSFLSLEKCSIISGVSVIAKPFANFSRIIQCIYVSDCFNKSSTNCKESAVTLKESSVNSRTLIIVILTIMVIVIFATFGVIVLTKFKNNSFAEHFKMESIIDYKDSGSNRIYSELENVP 900 HSP 2 Score: 832.402 bits (2149), Expect = 0.000e+0 Identity = 417/418 (99.76%), Postives = 417/418 (99.76%), Query Frame = 3 Query: 1089 MTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLXXXXXXXXXXXXXAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKDF 2342 MTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSK F Sbjct: 1 MTSNSKLGVFSLRNCPFSFIESNYTGSLTTTDKMHVKICRPISKDFIYPSGQYCLLLLSQEKLKCPSDFHAYIIRSAVNGEQLLKFCCLVNNLTTIMWLSHENNSINENSSIAFVLLTKECPFMISNVSMSYSIINATVESSSNPRGNQTMSDMGSQILKLCNYELLIDRFAYKKIGEVCPPGMVDSWLTFTSVFHWDPDLPNEIFKLEYCVGNAILKLDSFPKGNYCLYKIGNICPLGFISSSMPNPKTVLNQTLYAPNYTGDAFCCRTDGQNSVSISSERFPFLNKNKHSFGILISNKKDVCPKIIGYVDHHGANLDGFYCAYRTANDNYKWSNKIIFPMQTSETTQKFPKRKHWESLMNFQYVSSVVLSYPKDPFCIVSGEKCSSMKNIDFAMLYPISNMFLCCSLNKYYVSKGF 418
BLAST of SMED30009480 vs. Planmine SMEST
Match: SMESG000059844.1 (SMESG000059844.1) HSP 1 Score: 173.711 bits (439), Expect = 1.833e-46 Identity = 91/160 (56.88%), Postives = 115/160 (71.88%), Query Frame = -2 Query: 4048 WDRRYSRSTYGSQEWSH*NPER-G*DVEVSSVVIKREPGRNPA**IRREAEFQLQQHEYFERKYRWKASN*RRRLARINADIESGLIPSLDGYLSDYKVAFNPEDPMLLNINTPVHLAVPKKLLQPEILDNLIDRD-DDHSYARRPLQQDNHDKNHRNEI 4521 WD RYS ST+G+ EW + N R D+E+ S+ IKREPGRNPA IR EAE LQQ + ERKY WKAS RRL +IN DI G IPS DGYL +Y V FNPEDP L +NTPVHLA+PK+LLQP+IL+ L DR ++H+Y+RRPL ++ +N+ ++I Sbjct: 72 WDPRYSLSTHGTSEWPYRNKNRHDEDMELLSLAIKREPGRNPAREIRHEAEVALQQFVHLERKYHWKASLQLRRLVKINKDIAGGRIPSSDGYLLEYNVTFNPEDPAFLELNTPVHLALPKRLLQPDILEALTDRTYEEHAYSRRPLNREAPPRNYGHKI 231 The following BLAST results are available for this feature:
BLAST of SMED30009480 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30009480 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 1
BLAST of SMED30009480 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30009480 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30009480 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of SMED30009480 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009480 ID=SMED30009480|Name=SMED30009480|organism=Schmidtea mediterranea sexual|type=transcript|length=4522bpback to top protein sequence of SMED30009480-orf-1 >SMED30009480-orf-1 ID=SMED30009480-orf-1|Name=SMED30009480-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=696bp MKSWIIGLCLLLSLWNISTRDSSRPCRSTENGWDYDGPVNISSNNKSCKPback to top protein sequence of SMED30009480-orf-2 >SMED30009480-orf-2 ID=SMED30009480-orf-2|Name=SMED30009480-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=279bp METPFILPLKPGTKECPKITNFSYEKWKSKKIHFQTIQYMIFCFYHKNVSback to top protein sequence of SMED30009480-orf-3 >SMED30009480-orf-3 ID=SMED30009480-orf-3|Name=SMED30009480-orf-3|organism=Schmidtea mediterranea sexual|type=polypeptide|length=145bp MVVLLQRTTCVRVVVISIDQIVQDFGLQQLLRNRQVHRRVDIEKHWILRIback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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