Cleavage and polyadenylation specificity factor subunit 4
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30009393 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327]) HSP 1 Score: 226.868 bits (577), Expect = 7.703e-73 Identity = 115/276 (41.67%), Postives = 158/276 (57.25%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTEN--RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T + + N P ++ S + + +N + PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 4 IIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPP-----LQRSSSLIQLTSQNSSPNQQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327]) HSP 1 Score: 221.861 bits (564), Expect = 3.680e-71 Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPAKQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 244
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327]) HSP 1 Score: 183.726 bits (465), Expect = 4.584e-57 Identity = 97/221 (43.89%), Postives = 126/221 (57.01%), Query Frame = 2 Query: 209 LCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 1 MCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPAKQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFL 188
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4L (cleavage and polyadenylation specific factor 4 like [Source:HGNC Symbol;Acc:HGNC:33632]) HSP 1 Score: 175.637 bits (444), Expect = 4.763e-54 Identity = 78/165 (47.27%), Postives = 108/165 (65.45%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNR--VEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAH 541 ++A +F FA +E Q G LPF MDK + VCN++ G CE LCP RH VCKH+L GLCKKGD C+FLH YD+++MP+CYF++K+G+C N+ C++ H + + +CPWYD+GFC GP CK H +I C NY+ GFCP+GP+C++A Sbjct: 2 QEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAQ 166
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327]) HSP 1 Score: 170.244 bits (430), Expect = 1.995e-51 Identity = 97/274 (35.40%), Postives = 130/274 (47.45%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+G P C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFG------------------------------PLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPAKR-TPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 211
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Celegans
Match: cpsf-4 (Cleavage and Polyadenylation Specificity Factor [Source:UniProtKB/TrEMBL;Acc:Q7YTG9]) HSP 1 Score: 196.823 bits (499), Expect = 5.296e-61 Identity = 108/278 (38.85%), Postives = 146/278 (52.52%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTEN------RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRN 868 LV++ + + + L Q G+ PF +D+ VC C CP RH++ VCKH+L GLCKKGD CEFLH YD++KMP+C+FF+KY C N C + H ++ +CPWYDRGFC +GP CK H + C NY+ GFC GP+C+YAHP + EN + ++ Q C +C+E GHK C L R+ + ++ D P K K L+++TCYKCGEKGHYAN C K FL N Sbjct: 18 LVSNITAPMTDVEEALFNQRGMKEAPFRDLDRSGKAVCRKNKLKMCPFGPTCPLRHIDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPSFGLPSFENIAVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRV----------------DLSLIPDK----KNLSDVTCYKCGEKGHYANRCHKGALAFLSN 275
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Celegans
Match: cpsf-4 (Cleavage and Polyadenylation Specificity Factor [Source:UniProtKB/TrEMBL;Acc:Q7YTG9]) HSP 1 Score: 196.823 bits (499), Expect = 5.296e-61 Identity = 108/278 (38.85%), Postives = 146/278 (52.52%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTEN------RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRN 868 LV++ + + + L Q G+ PF +D+ VC C CP RH++ VCKH+L GLCKKGD CEFLH YD++KMP+C+FF+KY C N C + H ++ +CPWYDRGFC +GP CK H + C NY+ GFC GP+C+YAHP + EN + ++ Q C +C+E GHK C L R+ + ++ D P K K L+++TCYKCGEKGHYAN C K FL N Sbjct: 18 LVSNITAPMTDVEEALFNQRGMKEAPFRDLDRSGKAVCRKNKLKMCPFGPTCPLRHIDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPSFGLPSFENIAVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRV----------------DLSLIPDK----KNLSDVTCYKCGEKGHYANRCHKGALAFLSN 275
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Fly
Match: Clp (gene:FBgn0015621 transcript:FBtr0078011) HSP 1 Score: 208.764 bits (530), Expect = 1.104e-65 Identity = 118/292 (40.41%), Postives = 157/292 (53.77%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYL--AGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTE--NRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKN-----------GNPQFNGFSKMDCN--DQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRN 868 D L+A+ S F L +Q+G LPF MDK A VCN+ C+ CP RH+ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++++ C N+ C + H + ++ +CPWY RGFC +GP C+ H ++ C +Y+ GFCP+GP CK+ HP + LP E + H++ C +C E GHK C++ V RN + + + G M N Q GP PL EITCYKCG KGHYAN C K + FL N Sbjct: 2 DILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHKANSCKQY--VGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQPHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSN 291
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Zebrafish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:ZFIN;Acc:ZDB-GENE-990415-180]) HSP 1 Score: 222.246 bits (565), Expect = 3.619e-71 Identity = 116/282 (41.13%), Postives = 159/282 (56.38%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWL---------PLPTENRESHRQTWICRHCNEPGHKIQFCR-KLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+A F + +E+Q+G LPFP MDK A VC +++ C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+G CK+ HP++ PLP + + +Q + IQ +S + +RI N + I + N G RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 2 QELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYFMRAACMKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGATEQPPLPQQVQTQQKQQNMQPMNRSSQSLIQLTNPNISNNNHQRIPNAVGIVHSNSHMGG--------------ARGP-RPLDQVTCYKCGEKGHYANKCTKGHLAFL 268
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Zebrafish
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9399]) HSP 1 Score: 77.7962 bits (190), Expect = 2.201e-15 Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 2 Query: 188 GTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRV--EIPNCPWYDRGFCNYGPACKLLHEWKIACKNYIN-GFCPDGPECKYAH 541 G C + CP+ H D+ VC +L G CKK D +C F H KMP C +F K G C N SC Y+H V + C + RG+C G CK H + C ++ + G CP G +CK H Sbjct: 706 GKCNHGNTCPYIHDPDKV-AVCTRFLRGTCKKTDGTCPFSHKVAKEKMPVCSYFLK-GICNNSSCPYSHVYVSRKAEVCEDFVRGYCPQGDKCKKKH--TLVCPDFSSTGVCPRGSKCKLHH 823
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: cpsf4l (cleavage and polyadenylation specific factor 4-like [Source:NCBI gene;Acc:549557]) HSP 1 Score: 222.246 bits (565), Expect = 4.348e-71 Identity = 113/274 (41.24%), Postives = 155/274 (56.57%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKR---GPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+A KF F + +E Q G LPF MDK A VC++Y+ G C CP RH+N VCKH+L GLCKKGD CEFLH YDM +MP+CYF++K+GEC N+ C + H ++ +CPWYDRGFC +GPACK H ++ C NY+ GFCP+GP+CKY HPK L L + H P + +F D E I + + + + + + + + G L+PL ++TC+KCGE+GHYAN C +S F+ Sbjct: 4 LIASIEKFSFDLEKDIEGQRGALLLPFQGMDKSGAAVCDFYVKGICRKGSTCPFRHLNGEKTVVCKHWLRGLCKKGDQCEFLHEYDMGRMPECYFYSKFGECSNKDCPFLHIDPASKVKDCPWYDRGFCKHGPACKHRHTRRVMCANYLVGFCPEGPKCKYVHPKADLVLCNAD-----------HPKNPAVQQRFPATSLPCDLEAIAKHQGLMLEHSRLSHLTVISMVQERIRKLQENVYGGLRPLEQVTCFKCGERGHYANKCNRSRLAFM 266
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: ubxn7 (UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5809953]) HSP 1 Score: 222.246 bits (565), Expect = 5.641e-71 Identity = 115/273 (42.12%), Postives = 156/273 (57.14%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 L+A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFC +GP CK+ HP++ LP E + + + R S + +N + +PQ G + Q G RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 4 LIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRF-ELPMGTTEQPPLPQQTQTQQKQNNNQVLQRSSSLIQLTS-QNSPVSQQRSPQTIGVMQ----SQSGNQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: ubxn7 (UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5809953]) HSP 1 Score: 218.779 bits (556), Expect = 2.879e-69 Identity = 118/303 (38.94%), Postives = 164/303 (54.13%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTEN------------------------------RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFC +GP CK+ HP++ LP+ T + S+R + + N Q ++ S + + +N + +PQ G + Q G RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 2 QELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPPLPQQTQTQQKVFVYLHFANLHYAKLWFKSSYRFIFYLQQNNN-----QVLQRSSSLIQLTSQNSPVSQQRSPQTIGVMQ----SQSGNQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFL 294
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: cpsf4l (cleavage and polyadenylation specific factor 4-like [Source:NCBI gene;Acc:549557]) HSP 1 Score: 196.823 bits (499), Expect = 2.125e-61 Identity = 105/275 (38.18%), Postives = 144/275 (52.36%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICR--HCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKR---GPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+A KF F + +E Q G LPF MD CP RH+N VCKH+L GLCKKGD CEFLH YDM +MP+CYF++K+GEC N+ C + H ++ +CPWYDRGFC +GPACK H ++ C NY+ GFCP+GP+CKY HPK +C H P + +F D E I + + + + + + + + G L+PL ++TC+KCGE+GHYAN C +S F+ Sbjct: 4 LIASIEKFSFDLEKDIEGQRGALLLPFQGMD-----------------SSTCPFRHLNGEKTVVCKHWLRGLCKKGDQCEFLHEYDMGRMPECYFYSKFGECSNKDCPFLHIDPASKVKDCPWYDRGFCKHGPACKHRHTRRVMCANYLVGFCPEGPKCKYVHPKA------------DLVLCNADHPKNPAVQQRFPATSLPCDLEAIAKHQGLMLEHSRLSHLTVISMVQERIRKLQENVYGGLRPLEQVTCFKCGERGHYANKCNRSRLAFM 249
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: ubxn7 (UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5809953]) HSP 1 Score: 162.155 bits (409), Expect = 2.112e-48 Identity = 93/274 (33.94%), Postives = 130/274 (47.45%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 L+A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K +GP C+ H ++ C NY+ GFC +GP CK+ HP++ LP+ T + +++ +Q ++GN RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 2 QELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSK------------------------------FGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPP--------------------LPQQTQTQQKTIGVMQSQSGN-----------------QGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 207
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602]) HSP 1 Score: 226.483 bits (576), Expect = 7.900e-73 Identity = 115/276 (41.67%), Postives = 156/276 (56.52%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T + Q +Q L ++ + N + PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKQSNNPPLQRSSSLIQLTSQ---NSSPNQQRAPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602]) HSP 1 Score: 221.09 bits (562), Expect = 4.394e-71 Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKQRAPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 244
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602]) HSP 1 Score: 217.624 bits (553), Expect = 1.178e-69 Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKRA-PQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602]) HSP 1 Score: 169.474 bits (428), Expect = 2.587e-51 Identity = 97/274 (35.40%), Postives = 130/274 (47.45%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+G P C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFG------------------------------PLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKRA-PQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 211
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4l (cleavage and polyadenylation specific factor 4-like [Source:MGI Symbol;Acc:MGI:1277182]) HSP 1 Score: 168.318 bits (425), Expect = 1.016e-50 Identity = 78/171 (45.61%), Postives = 106/171 (61.99%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNR--VEIPNCPWYDRGFC-NYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLP 556 + ++A F FA +E Q G LPF MDK + VCN++ G C LCP RH VCKH+L GLC+K D C+FLH YD+SKMP CYF +K+G C N+ C + H + +++ +CPWY++GFC GP CK H ++ C NY GFCP+GP+C++ HPK P Sbjct: 2 EEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLRHEQGEKLVVCKHWLRGLCRKSDCCDFLHQYDVSKMPVCYFHSKFGNCSNKECLFLHLKPVLKLQDCPWYNQGFCKEVGPLCKYRHVHQVLCPNYFTGFCPEGPQCQFGHPKMSP 172
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|O95639|CPSF4_HUMAN (Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens OX=9606 GN=CPSF4 PE=1 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 3.699e-72 Identity = 115/276 (41.67%), Postives = 158/276 (57.25%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTEN--RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T + + N P ++ S + + +N + PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 4 IIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPP-----LQRSSSLIQLTSQNSSPNQQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|Q6DJP7|CPSF4_XENLA (Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis OX=8355 GN=cpsf4 PE=2 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.260e-71 Identity = 116/276 (42.03%), Postives = 160/276 (57.97%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 L+A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFC +GP CK+ HP++ LP+ T + Q + +Q L ++ + N + +PQ G ++ Q G RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 2 QELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTAEQPPLPQQTQNQQKQNNNQVLQRSSSLIQLTSQ---NSPVSQQRSPQTIGVMQL----QSGTQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|Q66KE3|CPSF4_XENTR (Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis OX=8364 GN=cpsf4 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.988e-70 Identity = 115/273 (42.12%), Postives = 156/273 (57.14%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 L+A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFC +GP CK+ HP++ LP E + + + R S + +N + +PQ G + Q G RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 4 LIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRF-ELPMGTTEQPPLPQQTQTQQKQNNNQVLQRSSSLIQLTS-QNSPVSQQRSPQTIGVMQ----SQSGNQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|O19137|CPSF4_BOVIN (Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus OX=9913 GN=CPSF4 PE=1 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 4.026e-69 Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKR-TPQVIGVMQ----SQNSSAGSRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|Q5FVR7|CPSF4_RAT (Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus OX=10116 GN=Cpsf4 PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 8.238e-69 Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871 ++A F + +E+Q+G LPFP MDK A VC ++L C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+GP CK+ HP++ LP+ T +E + Q K PQ G + Q RGP +PL ++TCYKCGEKGHYAN C K + FL Sbjct: 2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKRA-PQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: G4VRQ2 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_037380 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 1.011e-94 Identity = 143/291 (49.14%), Postives = 186/291 (63.92%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCND---------QFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 D+L+AD S F I LE QIG+ LPF M+K A VC +++ C L++LCP RH+ VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H ++ +CPWYDRGFC GP C+ H ++ACKNYINGFCP G ECKYAHP W PLP ++++ + WIC +CNE GHKIQFC KLS +R R++ Q +++N + + N +FGG ++GP KPL+E+TC+KCGEKGHYAN C K FL Sbjct: 2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFITNQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYINGFCPKGRECKYAHPIWWPLPGSDQDTQKSRWICHYCNERGHKIQFCLKLSPEERLRLQEQQRMQNISTGGAALPQQGVNPGSRFVSERLKFGGLMGTSQAAPTGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: A0A183Q9N7 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 291.967 bits (746), Expect = 1.011e-94 Identity = 143/291 (49.14%), Postives = 186/291 (63.92%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCND---------QFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 D+L+AD S F I LE QIG+ LPF M+K A VC +++ C L++LCP RH+ VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H ++ +CPWYDRGFC GP C+ H ++ACKNYINGFCP G ECKYAHP W PLP ++++ + WIC +CNE GHKIQFC KLS +R R++ Q +++N + + N +FGG ++GP KPL+E+TC+KCGEKGHYAN C K FL Sbjct: 2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFITNQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYINGFCPKGRECKYAHPIWWPLPGSDQDTQKSRWICHYCNERGHKIQFCLKLSPEERLRLQEQQRMQNISTGGAALPQQGVNPGSRFVSERLKFGGLMGTSQAAPTGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: A0A095B3Z9 (Cleavage and polyadenylation specificity factor subunit 4 (Fragment) OS=Schistosoma haematobium OX=6185 GN=MS3_10495 PE=4 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 1.633e-94 Identity = 143/291 (49.14%), Postives = 186/291 (63.92%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCND---------QFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 D+L+AD S F I LE QIG+ LPF M+K A VC +++ C L++LCP RH+ VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H ++ +CPWYDRGFC GP C+ H ++ACKNYINGFCP G ECKYAHP W PLP ++++ + WIC +CNE GHKIQFC KLS +R R++ Q +++N + + N +FGG ++GP KPL+E+TC+KCGEKGHYAN C K FL Sbjct: 2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFIINQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYINGFCPKGRECKYAHPIWWPLPGSDQDTQKSRWICHYCNERGHKIQFCLKLSPEERLRLQEQQRMQNISTGGAALPQQGVNPGSRFVSERLKFGGLMGTSQAAPTGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: C1LF64 (Cleavage and polyadenylation specificity factor subunit 4 OS=Schistosoma japonicum OX=6182 PE=2 SV=1) HSP 1 Score: 289.271 bits (739), Expect = 1.160e-93 Identity = 142/291 (48.80%), Postives = 185/291 (63.57%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQ---------FNGFSKMDCNDQFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 D+L+AD S F I LE QIG+ LPF M+K A VC +++ C L +LCP RH+ VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H ++ +CPWYDRGFC GP C+ H ++ACKNY+NGFCP G ECKYAHP W PLP ++++ + W+C +CNE GHKIQFC KLS +R R++ Q ++ N N G + + +FGG ++GP KPL+E+TC+KCGEKGHYAN C K FL Sbjct: 2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFIINQCPLSNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYVNGFCPKGRECKYAHPTWWPLPGSDQDTQKSRWVCHYCNERGHKIQFCLKLSPEERLRLQEQQRMLNVNTSGVTLPHQGASAGSRFVSEHLKFGGLMSTSQVAPSGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: A0A0X3PVY0 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR150511 PE=4 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 1.005e-92 Identity = 145/314 (46.18%), Postives = 193/314 (61.46%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIK----------------------NGNPQFNGFSKM--------------------DCNDQFG--GPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+AD S+ F IN LE+QIG+ +LPFPKM+K A VCN++L +C L LCP RH+ VCKH+L GLCKKGD C+FLH YDM+KMP+CYFF+K+GEC N+ C + H +I +C WY RGFC GP+C+ H ++AC+N+INGFCP G ECK+AHPKW PLP ++++H+ W+CR+CNE GHK+QFC KLS +R+R + Q Q++ G+P F + M D Q G G ++ P KPL+E+TC+KCG+KGHYAN C K FL Sbjct: 4 LIADVSESEFLINYQLEQQIGLGSLPFPKMNKSGAGVCNFFLTNSCSLSTLCPFRHIEGDKTVVCKHWLRGLCKKGDDCDFLHEYDMTKMPECYFFSKFGECMNKECPFLHVDPASKIQDCAWYARGFCRNGPSCRNRHTRRVACQNFINGFCPLGKECKFAHPKWAPLPGADQDTHKHKWVCRYCNERGHKVQFCHKLSLEERQRYQEQSQMRFQSPQPLGGLQGQPIAMGAPGSTGHPPFFSPAGMGAASLNRPLMNPPGLNPHPFDRVKQIGAVGLPRQVPQKPLDEVTCFKCGDKGHYANRCNKGYLAFL 317
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:103032556]) HSP 1 Score: 219.55 bits (558), Expect = 2.927e-70 Identity = 118/274 (43.07%), Postives = 161/274 (58.76%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPL-PTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+A+ F + +E+Q+G LPFP MDK A VC +++ C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+G CK+ HP++ LP+ TE +Q+ + N P LS + N P +G S+ + GG RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 2 QELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQPPLPQQSQTQQKQNMPNMNRS---SLSLIQLTNSNNNPNFHQKMPYMHGPSQN--QNHMGG--SRGP-RPLDQVTCYKCGEKGHYANKCTKGHLAFL 267
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:103032556]) HSP 1 Score: 192.2 bits (487), Expect = 1.053e-59 Identity = 105/255 (41.18%), Postives = 147/255 (57.65%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPL-PTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYK 805 L+A+ F + +E+Q+G LPFP MDK A VC +++ C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+G CK+ HP++ LP+ TE +Q+ + N P LS + N P +G S+ + GG RGP +PL+++TCYK Sbjct: 2 QELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQPPLPQQSQTQQKQNMPNMNRS---SLSLIQLTNSNNNPNFHQKMPYMHGPSQNQ--NHMGG--SRGP-RPLDQVTCYK 248
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:103032556]) HSP 1 Score: 138.272 bits (347), Expect = 1.862e-39 Identity = 67/175 (38.29%), Postives = 95/175 (54.29%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENR 574 L+A+ F + +E+Q+G LPFP MDK A VC +++ C +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K +GP C+ H ++ C NY+ GFCP+G CK+ HP++ LP+ T + Sbjct: 2 QELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSK------------------------------FGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQ 146
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9399]) HSP 1 Score: 66.6254 bits (161), Expect = 7.812e-12 Identity = 39/119 (32.77%), Postives = 51/119 (42.86%), Query Frame = 2 Query: 188 GTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAH 541 G C CP+ H D+ VC +L G CK+ D +C F H KMP C +F K G C N SC Y+H V C+++I G+CP G +CK H Sbjct: 770 GKCNRGSSCPYIHDPDKV-AVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLK-GICNNSSCPYSHVYVS----------------------RKADVCQDFIRGYCPQGEKCKKKH 864 HSP 2 Score: 59.3066 bits (142), Expect = 1.877e-9 Identity = 41/114 (35.96%), Postives = 53/114 (46.49%), Query Frame = 2 Query: 149 DKCKAPVCNWYLAGTC-ELDDLCPHRH-MNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNRVEIPNCPWYDR-GFCNYGPACKLLHEWK 478 D K VC +L GTC + D CP H ++ VC ++L G+C SC + H+Y K C F + G C Q E C H V CP + R G C G CKL H + Sbjct: 783 DPDKVAVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLKGICNN-SSCPYSHVYVSRKADVCQDFIR-GYCPQGEKCKKKHTLV----CPEFSRTGACPKGSKCKLQHRQR 890 HSP 3 Score: 48.9062 bits (115), Expect = 4.480e-6 Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 2 Query: 125 ATLPFP-KMDKCKAPVCNWYLAGTCELDDLCPHRHMN-DRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNR 397 T PF K+ K K PVC+++L G C + CP+ H+ R VC+ ++ G C +G+ C+ H C F++ G C + C H + Sbjct: 803 GTCPFSHKVSKEKMPVCSYFLKGICN-NSSCPYSHVYVSRKADVCQDFIRGYCPQGEKCKKKHTL------VCPEFSRTGACPKGSKCKLQHRQ 889
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9399]) HSP 1 Score: 66.6254 bits (161), Expect = 7.869e-12 Identity = 39/119 (32.77%), Postives = 51/119 (42.86%), Query Frame = 2 Query: 188 GTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAH 541 G C CP+ H D+ VC +L G CK+ D +C F H KMP C +F K G C N SC Y+H V C+++I G+CP G +CK H Sbjct: 770 GKCNRGSSCPYIHDPDKV-AVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLK-GICNNSSCPYSHVYVS----------------------RKADVCQDFIRGYCPQGEKCKKKH 864 HSP 2 Score: 59.3066 bits (142), Expect = 1.889e-9 Identity = 41/114 (35.96%), Postives = 53/114 (46.49%), Query Frame = 2 Query: 149 DKCKAPVCNWYLAGTC-ELDDLCPHRH-MNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNRVEIPNCPWYDR-GFCNYGPACKLLHEWK 478 D K VC +L GTC + D CP H ++ VC ++L G+C SC + H+Y K C F + G C Q E C H V CP + R G C G CKL H + Sbjct: 783 DPDKVAVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLKGICNN-SSCPYSHVYVSRKADVCQDFIR-GYCPQGEKCKKKHTLV----CPEFSRTGACPKGSKCKLQHRQR 890 HSP 3 Score: 48.9062 bits (115), Expect = 4.505e-6 Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 2 Query: 125 ATLPFP-KMDKCKAPVCNWYLAGTCELDDLCPHRHMN-DRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNR 397 T PF K+ K K PVC+++L G C + CP+ H+ R VC+ ++ G C +G+ C+ H C F++ G C + C H + Sbjct: 803 GTCPFSHKVSKEKMPVCSYFLKGICN-NSSCPYSHVYVSRKADVCQDFIRGYCPQGEKCKKKHTL------VCPEFSRTGACPKGSKCKLQHRQ 889
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Yeast
Match: YTH1 (Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000006311]) HSP 1 Score: 109.768 bits (273), Expect = 2.163e-29 Identity = 65/177 (36.72%), Postives = 96/177 (54.24%), Query Frame = 2 Query: 68 DDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLA----GTCELDDLCPHRHMND--RSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGP-ECKYAHPKWLPLPTE 568 D +K+ F L ++ + P P+C +Y + +C LCP +H+ ++ VC+H+L GLCKK D CE+LH Y++ KMP+C FF+K G C Q+ C Y H +IP C Y+ GFC G +C H K+ C+ Y+ GFCP G EC HP+++ +P E Sbjct: 7 DTAKYPFKFEPFLRQEYSFSLDP-------DRPICEFYNSREGPKSCPRGPLCPKKHVLPIFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQYLHIDPASKIPKCENYEMGFCPLGSSCPRRHIKKVFCQRYMTGFCPLGKDECDMEHPQFI-IPDE 175
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Nematostella
Match: EDO40074 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8B4]) HSP 1 Score: 188.348 bits (477), Expect = 1.022e-59 Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPL 559 +VA + I L+ QIG +LPFP MDK A VC++++ G C CP RH + VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C Y H + +I +CPWYDRGFC +GP C+ H ++ C NY+ GFCPDGP CK+ HP++ LP+ Sbjct: 4 IVASIADITLEIEYQLKNQIGCISLPFPGMDKSSAAVCDFFVKGLCNRGAYCPFRHTSGEKTVVCKHWLRGLCKKGDQCEFLHQYDMTKMPECYFYSKFGECSNKKCQYLHIDPQSKIKDCPWYDRGFCKHGPHCRHRHVRRVLCINYLCGFCPDGPNCKHKHPRFELPV 173
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Nematostella
Match: EDO33924 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQV2]) HSP 1 Score: 49.2914 bits (116), Expect = 1.719e-7 Identity = 44/135 (32.59%), Postives = 59/135 (43.70%), Query Frame = 2 Query: 149 DKCKAPVCNWYLAGTCE-LDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRV--EIPNCPWYDRGFCNYGPACKLLHEWKIACKNY-INGFCPDGPECKYAH 541 D K VC +L G C+ D C H D+ +Y+ G KKG E MP C FF K G C N+ C Y+H V + C + +G+C G CK H + C+ + G C G +CK H Sbjct: 31 DPSKVAVCTKFLKGKCKNTDGTCTFSHRIDKEKVY--NYIPGKNKKGSIPE--------NMPVCQFFLK-GTCFNDDCPYSHVNVSNKAAICEDFVKGYCPLGQQCKKKHS--LECEEFTFTGKCSKGHKCKQMH 152
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:101173062]) HSP 1 Score: 226.483 bits (576), Expect = 6.128e-73 Identity = 116/274 (42.34%), Postives = 163/274 (59.49%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNP---QFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 L+A+ F + +E+Q+G LPFP MDK + VC +++ GTC +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+G CK+ HP++ LP+ T + Q +IQ K + + +Q+ N +P Q N + + + RGP +PL+++TCYKCGEKGHYAN C K + FL Sbjct: 4 LLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMKGTCMKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTSEQPPLPQ------------QIQNQGKTAASSGRSSLSLIQLTNSSPGQRQQNNTNIISHQNNMNA--NRGP-RPLDQVTCYKCGEKGHYANKCTKGHLAFL 262
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:101173062]) HSP 1 Score: 199.904 bits (507), Expect = 1.562e-62 Identity = 103/255 (40.39%), Postives = 149/255 (58.43%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNP---QFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYK 805 L+A+ F + +E+Q+G LPFP MDK + VC +++ GTC +CP RH++ VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H E I +CPWYDRGFC +GP C+ H ++ C NY+ GFCP+G CK+ HP++ LP+ T + Q +IQ K + + +Q+ N +P Q N + + + RGP +PL+++TCYK Sbjct: 4 LLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMKGTCMKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTSEQPPLPQ------------QIQNQGKTAASSGRSSLSLIQLTNSSPGQRQQNNTNIISHQNNMNA--NRGP-RPLDQVTCYK 243
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:101168697]) HSP 1 Score: 62.7734 bits (151), Expect = 1.604e-10 Identity = 55/183 (30.05%), Postives = 78/183 (42.62%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWY-LAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH----NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYI-NGFCPDGPECKYAHPKWLPLPTENRES 580 SL S H A + Q +A + + K + C +Y G C C H D+ VC +L G CK+ D +C F H KMP C +F K G C N C Y+H ++ E+ C + +G+C G CK H + C ++ G C G CK H + L + N S Sbjct: 608 SSLARPSSTRHLASRAV---QRSIAIIRQARQKKQQKQYCMYYNRFGKCNRGTSCTFIHDPDKV-AVCTRFLRGTCKREDGTCPFSHKVSKEKMPVCSYFLK-GICNNSDCPYSHVYVSSKAEV--CEDFVKGYCPEGEKCKKKHT--LVCSDFFKTGSCSRGSRCKLQHRQRLKRTSSNTSS 781
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:101168697]) HSP 1 Score: 62.7734 bits (151), Expect = 1.613e-10 Identity = 55/183 (30.05%), Postives = 78/183 (42.62%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWY-LAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH----NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYI-NGFCPDGPECKYAHPKWLPLPTENRES 580 SL S H A + Q +A + + K + C +Y G C C H D+ VC +L G CK+ D +C F H KMP C +F K G C N C Y+H ++ E+ C + +G+C G CK H + C ++ G C G CK H + L + N S Sbjct: 608 SSLARPSSTRHLASRAV---QRSIAIIRQARQKKQQKQYCMYYNRFGKCNRGTSCTFIHDPDKV-AVCTRFLRGTCKREDGTCPFSHKVSKEKMPVCSYFLK-GICNNSDCPYSHVYVSSKAEV--CEDFVKGYCPEGEKCKKKHT--LVCSDFFKTGSCSRGSRCKLQHRQRLKRTSSNTSS 781
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: zc3h6 (zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:101161746]) HSP 1 Score: 51.6026 bits (122), Expect = 7.179e-7 Identity = 26/80 (32.50%), Postives = 43/80 (53.75%), Query Frame = 2 Query: 167 VCNWYLAGTCELDDLCPHRH---MNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHN 394 +C ++L G C + C H + D+ +CK YL G C KGD C ++H ++ P C FF +C Q ++C ++H+ Sbjct: 319 ICKYFLEGRCIKGEQCKFEHELVVPDKKKELCKFYLQGYCSKGDHCIYMH----NEYP-CKFFHTGAKCYQGDNCKFSHD 393
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000073172.1 (SMESG000073172.1) HSP 1 Score: 571.237 bits (1471), Expect = 0.000e+0 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNHE 874 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNHE Sbjct: 2 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNHE 275
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000073169.1 (SMESG000073169.1) HSP 1 Score: 311.227 bits (796), Expect = 4.244e-106 Identity = 151/271 (55.72%), Postives = 187/271 (69.00%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLP-TENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFG--GPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 LVAD + F + E+QIG+ LPF KMDK +A VC +L C L D CP RH+ VCKHYLNGLCKKGD CE+LH Y+M+KMP+CYF++K+GECQN C YTH + +I NCPWYDRGFC GP C HE KIACKNYINGFC DGP+CK++HPKW PLP + ++ HRQ W+C +C++PGHKIQFC KL R++++ ++Q K + NG D +G P + G LKPL EITC+KCGEKGHYAN C KS FL Sbjct: 4 LVADVHNYKFIVEAQFEEQIGLGELPFIKMDKSRAGVCQLFLENNCILGDRCPLRHIKGHRTIVCKHYLNGLCKKGDECEYLHEYNMNKMPECYFYSKFGECQNSECMYTHTKFQIKNCPWYDRGFCRNGPNCNFTHERKIACKNYINGFCVDGPDCKFSHPKWWPLPGNDQQDQHRQRWVCHNCHQPGHKIQFCLKLPVDVRQKLQEEMQAKY---KING-------DHYGVYRPGRSGQLKPLEEITCFKCGEKGHYANRCNKSYLAFL 264
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000074889.1 (SMESG000074889.1) HSP 1 Score: 293.123 bits (749), Expect = 2.369e-99 Identity = 144/268 (53.73%), Postives = 178/268 (66.42%), Query Frame = 2 Query: 53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFN 856 DS + + F F I L++K++G++TLPF KMDK KAP+C +L+G C+L + CPHRH+N+ +NTVCKHYLNGLCKKGD+CEFLH YDMSKM DC F C NE C Y H + EI CPWYDRGFC G C L H KI C N++NGFC + +C++AHP W PLP + E+H+QTWICRHCN GHKIQFC KLS+ +RE+I Q+QIKN P D F P K P EI C+ CG KGH +N C + N N Sbjct: 2 DSFIRHE--FEFNIESLIDKKVGLSTLPFLKMDKSKAPICFGFLSGNCDLGNFCPHRHVNNNANTVCKHYLNGLCKKGDACEFLHAYDMSKMADCQFNVGSERCTNEDCIYNHRKEEIQACPWYDRGFCKLGNTCNLKHVQKIMCNNFLNGFCFEADDCQFAHPIWFPLP-DTHETHKQTWICRHCNGRGHKIQFCNKLSKEEREKILKQIQIKNSTP---ANQSHDNKYVFKRPNKFNP-NQTGEIICFTCGVKGHKSNVCTRKNVN 262
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000073125.1 (SMESG000073125.1) HSP 1 Score: 288.886 bits (738), Expect = 2.443e-97 Identity = 142/273 (52.01%), Postives = 177/273 (64.84%), Query Frame = 2 Query: 59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPT-ENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFN--GFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862 +VA+ S F + LE Q+G+ LPF KM+K VC++Y+ C + CP RH+ VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+KYGECQN+ C + H +I +C WYDRGFC GP CK H ++ACKNYINGFCPDG ECK+AH +W PLP + ++ H+Q W+C HCNE GHKIQFC KL R++++ +LQ+K N GF D G + KPL EITCYKCGEKGHYAN C K FL Sbjct: 4 IVANASGIKFTVESQLEDQVGLGELPFSKMNKSGVGVCHFYMNNICTMGQRCPLRHIKGDRTVVCKHWLRGLCKKGDDCEFLHEYDMNKMPECYFFSKYGECQNKECPFLHIDPSTKIQDCQWYDRGFCRNGPHCKNRHVRRVACKNYINGFCPDGKECKFAHSRWWPLPGYDQQDQHKQRWVCHHCNERGHKIQFCLKLPLEKRQKLQEELQLKYANQNLTNPGF------DGLGHKFDKMSSKPLEEITCYKCGEKGHYANRCSKGYLAFL 270 The following BLAST results are available for this feature:
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 2
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 1
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30009393 ID=SMED30009393|Name=Cleavage and polyadenylation specificity factor subunit 4|organism=Schmidtea mediterranea sexual|type=transcript|length=929bpback to top protein sequence of SMED30009393-orf-1 >SMED30009393-orf-1 ID=SMED30009393-orf-1|Name=SMED30009393-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=276bp MDSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
|