Cleavage and polyadenylation specificity factor subunit 4

Overview
NameCleavage and polyadenylation specificity factor subunit 4
Smed IDSMED30009393
Length (bp)929
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Cleavage and polyadenylation specificity factor subunit 4 (SMED30009393) t-SNE clustered cells

Violin plots show distribution of expression levels for Cleavage and polyadenylation specificity factor subunit 4 (SMED30009393) in cells (dots) of each of the 12 neoblast clusters.

 

back to top


 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Cleavage and polyadenylation specificity factor subunit 4 (SMED30009393) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Cleavage and polyadenylation specificity factor subunit 4 (SMED30009393) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top


 

Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020




SMED30009393

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30009393h1SMcG0012805 SmedASXL_001422SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016
whole organism asexual adult RNA-sequencing evidence
X1 cellSMED30009393h1SMcG0012805 SmedASXL_001422SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30009393h1SMcG0012805 dd_Smed_v6_14360_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017
whole organism asexual adult RNA-sequencing evidence
zeta neoblastSMED30009393h1SMcG0012805 dd_Smed_v4_14360_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017
whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327])

HSP 1 Score: 226.868 bits (577), Expect = 7.703e-73
Identity = 115/276 (41.67%), Postives = 158/276 (57.25%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTEN--RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
            ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T        +     +  N P       ++ S + +   +N    +   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    4 IIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPP-----LQRSSSLIQLTSQNSSPNQQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327])

HSP 1 Score: 221.861 bits (564), Expect = 3.680e-71
Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPAKQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 244          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327])

HSP 1 Score: 183.726 bits (465), Expect = 4.584e-57
Identity = 97/221 (43.89%), Postives = 126/221 (57.01%), Query Frame = 2
Query:  209 LCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL
Sbjct:    1 MCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPAKQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFL 188          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4L (cleavage and polyadenylation specific factor 4 like [Source:HGNC Symbol;Acc:HGNC:33632])

HSP 1 Score: 175.637 bits (444), Expect = 4.763e-54
Identity = 78/165 (47.27%), Postives = 108/165 (65.45%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNR--VEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAH 541
              ++A   +F FA    +E Q G   LPF  MDK  + VCN++  G CE   LCP RH       VCKH+L GLCKKGD C+FLH YD+++MP+CYF++K+G+C N+ C++ H +   +  +CPWYD+GFC  GP CK  H  +I C NY+ GFCP+GP+C++A 
Sbjct:    2 QEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGFCKDGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAQ 166          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Match: CPSF4 (cleavage and polyadenylation specific factor 4 [Source:HGNC Symbol;Acc:HGNC:2327])

HSP 1 Score: 170.244 bits (430), Expect = 1.995e-51
Identity = 97/274 (35.40%), Postives = 130/274 (47.45%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+G                              P C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFG------------------------------PLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPAKR-TPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 211          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Celegans
Match: cpsf-4 (Cleavage and Polyadenylation Specificity Factor [Source:UniProtKB/TrEMBL;Acc:Q7YTG9])

HSP 1 Score: 196.823 bits (499), Expect = 5.296e-61
Identity = 108/278 (38.85%), Postives = 146/278 (52.52%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTEN------RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRN 868
            LV++ +     + + L  Q G+   PF  +D+    VC       C     CP RH++     VCKH+L GLCKKGD CEFLH YD++KMP+C+FF+KY  C N  C + H     ++ +CPWYDRGFC +GP CK  H  +  C NY+ GFC  GP+C+YAHP +     EN      + ++ Q   C +C+E GHK   C  L    R+   +  ++                D    P K    K L+++TCYKCGEKGHYAN C K    FL N
Sbjct:   18 LVSNITAPMTDVEEALFNQRGMKEAPFRDLDRSGKAVCRKNKLKMCPFGPTCPLRHIDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPSFGLPSFENIAVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRV----------------DLSLIPDK----KNLSDVTCYKCGEKGHYANRCHKGALAFLSN 275          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Celegans
Match: cpsf-4 (Cleavage and Polyadenylation Specificity Factor [Source:UniProtKB/TrEMBL;Acc:Q7YTG9])

HSP 1 Score: 196.823 bits (499), Expect = 5.296e-61
Identity = 108/278 (38.85%), Postives = 146/278 (52.52%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTEN------RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRN 868
            LV++ +     + + L  Q G+   PF  +D+    VC       C     CP RH++     VCKH+L GLCKKGD CEFLH YD++KMP+C+FF+KY  C N  C + H     ++ +CPWYDRGFC +GP CK  H  +  C NY+ GFC  GP+C+YAHP +     EN      + ++ Q   C +C+E GHK   C  L    R+   +  ++                D    P K    K L+++TCYKCGEKGHYAN C K    FL N
Sbjct:   18 LVSNITAPMTDVEEALFNQRGMKEAPFRDLDRSGKAVCRKNKLKMCPFGPTCPLRHIDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKMKDCPWYDRGFCRHGPYCKHRHRRRAVCPNYLAGFCLQGPDCQYAHPSFGLPSFENIAVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRV----------------DLSLIPDK----KNLSDVTCYKCGEKGHYANRCHKGALAFLSN 275          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Fly
Match: Clp (gene:FBgn0015621 transcript:FBtr0078011)

HSP 1 Score: 208.764 bits (530), Expect = 1.104e-65
Identity = 118/292 (40.41%), Postives = 157/292 (53.77%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYL--AGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTE--NRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKN-----------GNPQFNGFSKMDCN--DQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRN 868
            D L+A+ S   F     L +Q+G   LPF  MDK  A VCN+       C+    CP RH+      VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++++  C N+ C + H   + ++ +CPWY RGFC +GP C+  H  ++ C +Y+ GFCP+GP CK+ HP + LP   E    + H++   C +C E GHK   C++   V     RN +   +            +    G   M  N   Q  GP       PL EITCYKCG KGHYAN C K +  FL N
Sbjct:    2 DILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHKANSCKQY--VGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQPHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSN 291          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Zebrafish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:ZFIN;Acc:ZDB-GENE-990415-180])

HSP 1 Score: 222.246 bits (565), Expect = 3.619e-71
Identity = 116/282 (41.13%), Postives = 159/282 (56.38%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWL---------PLPTENRESHRQTWICRHCNEPGHKIQFCR-KLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
              L+A      F +   +E+Q+G   LPFP MDK  A VC +++   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+G  CK+ HP++          PLP + +   +Q  +          IQ     +S  + +RI N + I + N    G               RGP +PL+++TCYKCGEKGHYAN C K +  FL
Sbjct:    2 QELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYFMRAACMKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGATEQPPLPQQVQTQQKQQNMQPMNRSSQSLIQLTNPNISNNNHQRIPNAVGIVHSNSHMGG--------------ARGP-RPLDQVTCYKCGEKGHYANKCTKGHLAFL 268          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Zebrafish
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9399])

HSP 1 Score: 77.7962 bits (190), Expect = 2.201e-15
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 2
Query:  188 GTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRV--EIPNCPWYDRGFCNYGPACKLLHEWKIACKNYIN-GFCPDGPECKYAH 541
            G C   + CP+ H  D+   VC  +L G CKK D +C F H     KMP C +F K G C N SC Y+H  V  +   C  + RG+C  G  CK  H   + C ++ + G CP G +CK  H
Sbjct:  706 GKCNHGNTCPYIHDPDKV-AVCTRFLRGTCKKTDGTCPFSHKVAKEKMPVCSYFLK-GICNNSSCPYSHVYVSRKAEVCEDFVRGYCPQGDKCKKKH--TLVCPDFSSTGVCPRGSKCKLHH 823          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: cpsf4l (cleavage and polyadenylation specific factor 4-like [Source:NCBI gene;Acc:549557])

HSP 1 Score: 222.246 bits (565), Expect = 4.348e-71
Identity = 113/274 (41.24%), Postives = 155/274 (56.57%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKR---GPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            L+A   KF F +   +E Q G   LPF  MDK  A VC++Y+ G C     CP RH+N     VCKH+L GLCKKGD CEFLH YDM +MP+CYF++K+GEC N+ C + H     ++ +CPWYDRGFC +GPACK  H  ++ C NY+ GFCP+GP+CKY HPK  L L   +           H   P  + +F       D E I     +   + + +  + +    +     +    G L+PL ++TC+KCGE+GHYAN C +S   F+
Sbjct:    4 LIASIEKFSFDLEKDIEGQRGALLLPFQGMDKSGAAVCDFYVKGICRKGSTCPFRHLNGEKTVVCKHWLRGLCKKGDQCEFLHEYDMGRMPECYFYSKFGECSNKDCPFLHIDPASKVKDCPWYDRGFCKHGPACKHRHTRRVMCANYLVGFCPEGPKCKYVHPKADLVLCNAD-----------HPKNPAVQQRFPATSLPCDLEAIAKHQGLMLEHSRLSHLTVISMVQERIRKLQENVYGGLRPLEQVTCFKCGERGHYANKCNRSRLAFM 266          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: ubxn7 (UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5809953])

HSP 1 Score: 222.246 bits (565), Expect = 5.641e-71
Identity = 115/273 (42.12%), Postives = 156/273 (57.14%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
            L+A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFC +GP CK+ HP++  LP    E        +   +  +     R  S +     +N    +  +PQ  G  +     Q G    RGP +PL+++TCYKCGEKGHYAN C K +  FL   
Sbjct:    4 LIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRF-ELPMGTTEQPPLPQQTQTQQKQNNNQVLQRSSSLIQLTS-QNSPVSQQRSPQTIGVMQ----SQSGNQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: ubxn7 (UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5809953])

HSP 1 Score: 218.779 bits (556), Expect = 2.879e-69
Identity = 118/303 (38.94%), Postives = 164/303 (54.13%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTEN------------------------------RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
              L+A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFC +GP CK+ HP++ LP+ T                                + S+R  +  +  N      Q  ++ S + +   +N    +  +PQ  G  +     Q G    RGP +PL+++TCYKCGEKGHYAN C K +  FL
Sbjct:    2 QELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPPLPQQTQTQQKVFVYLHFANLHYAKLWFKSSYRFIFYLQQNNN-----QVLQRSSSLIQLTSQNSPVSQQRSPQTIGVMQ----SQSGNQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFL 294          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: cpsf4l (cleavage and polyadenylation specific factor 4-like [Source:NCBI gene;Acc:549557])

HSP 1 Score: 196.823 bits (499), Expect = 2.125e-61
Identity = 105/275 (38.18%), Postives = 144/275 (52.36%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICR--HCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKR---GPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            L+A   KF F +   +E Q G   LPF  MD                    CP RH+N     VCKH+L GLCKKGD CEFLH YDM +MP+CYF++K+GEC N+ C + H     ++ +CPWYDRGFC +GPACK  H  ++ C NY+ GFCP+GP+CKY HPK                +C   H   P  + +F       D E I     +   + + +  + +    +     +    G L+PL ++TC+KCGE+GHYAN C +S   F+
Sbjct:    4 LIASIEKFSFDLEKDIEGQRGALLLPFQGMD-----------------SSTCPFRHLNGEKTVVCKHWLRGLCKKGDQCEFLHEYDMGRMPECYFYSKFGECSNKDCPFLHIDPASKVKDCPWYDRGFCKHGPACKHRHTRRVMCANYLVGFCPEGPKCKYVHPKA------------DLVLCNADHPKNPAVQQRFPATSLPCDLEAIAKHQGLMLEHSRLSHLTVISMVQERIRKLQENVYGGLRPLEQVTCFKCGERGHYANKCNRSRLAFM 249          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Match: ubxn7 (UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5809953])

HSP 1 Score: 162.155 bits (409), Expect = 2.112e-48
Identity = 93/274 (33.94%), Postives = 130/274 (47.45%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              L+A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K                              +GP C+  H  ++ C NY+ GFC +GP CK+ HP++ LP+ T  +                             +++    +Q ++GN                    RGP +PL+++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSK------------------------------FGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPP--------------------LPQQTQTQQKTIGVMQSQSGN-----------------QGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 207          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602])

HSP 1 Score: 226.483 bits (576), Expect = 7.900e-73
Identity = 115/276 (41.67%), Postives = 156/276 (56.52%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T  +    Q             +Q    L ++  +   N    +   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPTKQSNNPPLQRSSSLIQLTSQ---NSSPNQQRAPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602])

HSP 1 Score: 221.09 bits (562), Expect = 4.394e-71
Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKQRAPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 244          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602])

HSP 1 Score: 217.624 bits (553), Expect = 1.178e-69
Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKRA-PQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4 (cleavage and polyadenylation specific factor 4 [Source:MGI Symbol;Acc:MGI:1861602])

HSP 1 Score: 169.474 bits (428), Expect = 2.587e-51
Identity = 97/274 (35.40%), Postives = 130/274 (47.45%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+G                              P C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFG------------------------------PLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKRA-PQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 211          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Match: Cpsf4l (cleavage and polyadenylation specific factor 4-like [Source:MGI Symbol;Acc:MGI:1277182])

HSP 1 Score: 168.318 bits (425), Expect = 1.016e-50
Identity = 78/171 (45.61%), Postives = 106/171 (61.99%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNR--VEIPNCPWYDRGFC-NYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLP 556
            + ++A    F FA    +E Q G   LPF  MDK  + VCN++  G C    LCP RH       VCKH+L GLC+K D C+FLH YD+SKMP CYF +K+G C N+ C + H +  +++ +CPWY++GFC   GP CK  H  ++ C NY  GFCP+GP+C++ HPK  P
Sbjct:    2 EEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLRHEQGEKLVVCKHWLRGLCRKSDCCDFLHQYDVSKMPVCYFHSKFGNCSNKECLFLHLKPVLKLQDCPWYNQGFCKEVGPLCKYRHVHQVLCPNYFTGFCPEGPQCQFGHPKMSP 172          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|O95639|CPSF4_HUMAN (Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens OX=9606 GN=CPSF4 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 3.699e-72
Identity = 115/276 (41.67%), Postives = 158/276 (57.25%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTEN--RESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
            ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T        +     +  N P       ++ S + +   +N    +   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    4 IIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQPPLPQQTQPPAKQSNNPP-----LQRSSSLIQLTSQNSSPNQQRTPQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|Q6DJP7|CPSF4_XENLA (Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis OX=8355 GN=cpsf4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.260e-71
Identity = 116/276 (42.03%), Postives = 160/276 (57.97%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              L+A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFC +GP CK+ HP++ LP+ T  +    Q    +        +Q    L ++  +   N    +  +PQ  G  ++    Q G    RGP +PL+++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTAEQPPLPQQTQNQQKQNNNQVLQRSSSLIQLTSQ---NSPVSQQRSPQTIGVMQL----QSGTQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|Q66KE3|CPSF4_XENTR (Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis OX=8364 GN=cpsf4 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.988e-70
Identity = 115/273 (42.12%), Postives = 156/273 (57.14%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
            L+A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFC +GP CK+ HP++  LP    E        +   +  +     R  S +     +N    +  +PQ  G  +     Q G    RGP +PL+++TCYKCGEKGHYAN C K +  FL   
Sbjct:    4 LIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRF-ELPMGTTEQPPLPQQTQTQQKQNNNQVLQRSSSLIQLTS-QNSPVSQQRSPQTIGVMQ----SQSGNQGNRGP-RPLDQVTCYKCGEKGHYANRCTKGHLAFLSGQ 269          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|O19137|CPSF4_BOVIN (Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus OX=9913 GN=CPSF4 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.026e-69
Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKR-TPQVIGVMQ----SQNSSAGSRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Match: sp|Q5FVR7|CPSF4_RAT (Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus OX=10116 GN=Cpsf4 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 8.238e-69
Identity = 114/276 (41.30%), Postives = 151/276 (54.71%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNH 871
              ++A      F +   +E+Q+G   LPFP MDK  A VC ++L   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+GP CK+ HP++ LP+ T                            +E      + Q   K   PQ  G  +     Q      RGP +PL ++TCYKCGEKGHYAN C K +  FL   
Sbjct:    2 QEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRFELPMGT----------------------------TEQPPLPQQTQPPTKRA-PQVIGVMQ----SQNSSAGNRGP-RPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ 243          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: G4VRQ2 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_037380 PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.011e-94
Identity = 143/291 (49.14%), Postives = 186/291 (63.92%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCND---------QFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            D+L+AD S   F I   LE QIG+  LPF  M+K  A VC +++   C L++LCP RH+      VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H     ++ +CPWYDRGFC  GP C+  H  ++ACKNYINGFCP G ECKYAHP W PLP  ++++ +  WIC +CNE GHKIQFC KLS  +R R++ Q +++N +       +   N          +FGG            ++GP KPL+E+TC+KCGEKGHYAN C K    FL
Sbjct:    2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFITNQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYINGFCPKGRECKYAHPIWWPLPGSDQDTQKSRWICHYCNERGHKIQFCLKLSPEERLRLQEQQRMQNISTGGAALPQQGVNPGSRFVSERLKFGGLMGTSQAAPTGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: A0A183Q9N7 (Uncharacterized protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.011e-94
Identity = 143/291 (49.14%), Postives = 186/291 (63.92%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCND---------QFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            D+L+AD S   F I   LE QIG+  LPF  M+K  A VC +++   C L++LCP RH+      VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H     ++ +CPWYDRGFC  GP C+  H  ++ACKNYINGFCP G ECKYAHP W PLP  ++++ +  WIC +CNE GHKIQFC KLS  +R R++ Q +++N +       +   N          +FGG            ++GP KPL+E+TC+KCGEKGHYAN C K    FL
Sbjct:    2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFITNQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYINGFCPKGRECKYAHPIWWPLPGSDQDTQKSRWICHYCNERGHKIQFCLKLSPEERLRLQEQQRMQNISTGGAALPQQGVNPGSRFVSERLKFGGLMGTSQAAPTGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: A0A095B3Z9 (Cleavage and polyadenylation specificity factor subunit 4 (Fragment) OS=Schistosoma haematobium OX=6185 GN=MS3_10495 PE=4 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.633e-94
Identity = 143/291 (49.14%), Postives = 186/291 (63.92%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCND---------QFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            D+L+AD S   F I   LE QIG+  LPF  M+K  A VC +++   C L++LCP RH+      VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H     ++ +CPWYDRGFC  GP C+  H  ++ACKNYINGFCP G ECKYAHP W PLP  ++++ +  WIC +CNE GHKIQFC KLS  +R R++ Q +++N +       +   N          +FGG            ++GP KPL+E+TC+KCGEKGHYAN C K    FL
Sbjct:    2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFIINQCPLNNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYINGFCPKGRECKYAHPIWWPLPGSDQDTQKSRWICHYCNERGHKIQFCLKLSPEERLRLQEQQRMQNISTGGAALPQQGVNPGSRFVSERLKFGGLMGTSQAAPTGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: C1LF64 (Cleavage and polyadenylation specificity factor subunit 4 OS=Schistosoma japonicum OX=6182 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.160e-93
Identity = 142/291 (48.80%), Postives = 185/291 (63.57%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQ---------FNGFSKMDCNDQFGG----------PKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            D+L+AD S   F I   LE QIG+  LPF  M+K  A VC +++   C L +LCP RH+      VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+K+GEC N+ C + H     ++ +CPWYDRGFC  GP C+  H  ++ACKNY+NGFCP G ECKYAHP W PLP  ++++ +  W+C +CNE GHKIQFC KLS  +R R++ Q ++ N N             G   +  + +FGG            ++GP KPL+E+TC+KCGEKGHYAN C K    FL
Sbjct:    2 DNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFIINQCPLSNLCPLRHIKADRTVVCKHWLRGLCKKGDDCEFLHEYDMTKMPECYFFSKFGECMNKECPFLHIDPASKVQDCPWYDRGFCRNGPLCRNRHVRRVACKNYVNGFCPKGRECKYAHPTWWPLPGSDQDTQKSRWVCHYCNERGHKIQFCLKLSPEERLRLQEQQRMLNVNTSGVTLPHQGASAGSRFVSEHLKFGGLMSTSQVAPSGPRQGPQKPLDEVTCFKCGEKGHYANRCNKGYLAFL 292          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Match: A0A0X3PVY0 (Uncharacterized protein OS=Schistocephalus solidus OX=70667 GN=TR150511 PE=4 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 1.005e-92
Identity = 145/314 (46.18%), Postives = 193/314 (61.46%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIK----------------------NGNPQFNGFSKM--------------------DCNDQFG--GPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            L+AD S+  F IN  LE+QIG+ +LPFPKM+K  A VCN++L  +C L  LCP RH+      VCKH+L GLCKKGD C+FLH YDM+KMP+CYFF+K+GEC N+ C + H     +I +C WY RGFC  GP+C+  H  ++AC+N+INGFCP G ECK+AHPKW PLP  ++++H+  W+CR+CNE GHK+QFC KLS  +R+R + Q Q++                       G+P F   + M                    D   Q G  G  ++ P KPL+E+TC+KCG+KGHYAN C K    FL
Sbjct:    4 LIADVSESEFLINYQLEQQIGLGSLPFPKMNKSGAGVCNFFLTNSCSLSTLCPFRHIEGDKTVVCKHWLRGLCKKGDDCDFLHEYDMTKMPECYFFSKFGECMNKECPFLHVDPASKIQDCAWYARGFCRNGPSCRNRHTRRVACQNFINGFCPLGKECKFAHPKWAPLPGADQDTHKHKWVCRYCNERGHKVQFCHKLSLEERQRYQEQSQMRFQSPQPLGGLQGQPIAMGAPGSTGHPPFFSPAGMGAASLNRPLMNPPGLNPHPFDRVKQIGAVGLPRQVPQKPLDEVTCFKCGDKGHYANRCNKGYLAFL 317          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:103032556])

HSP 1 Score: 219.55 bits (558), Expect = 2.927e-70
Identity = 118/274 (43.07%), Postives = 161/274 (58.76%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPL-PTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
              L+A+     F +   +E+Q+G   LPFP MDK  A VC +++   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+G  CK+ HP++ LP+  TE     +Q+   +  N P         LS +      N        P  +G S+    +  GG   RGP +PL+++TCYKCGEKGHYAN C K +  FL
Sbjct:    2 QELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQPPLPQQSQTQQKQNMPNMNRS---SLSLIQLTNSNNNPNFHQKMPYMHGPSQN--QNHMGG--SRGP-RPLDQVTCYKCGEKGHYANKCTKGHLAFL 267          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:103032556])

HSP 1 Score: 192.2 bits (487), Expect = 1.053e-59
Identity = 105/255 (41.18%), Postives = 147/255 (57.65%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPL-PTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYK 805
              L+A+     F +   +E+Q+G   LPFP MDK  A VC +++   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+G  CK+ HP++ LP+  TE     +Q+   +  N P         LS +      N        P  +G S+    +  GG   RGP +PL+++TCYK
Sbjct:    2 QELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQPPLPQQSQTQQKQNMPNMNRS---SLSLIQLTNSNNNPNFHQKMPYMHGPSQNQ--NHMGG--SRGP-RPLDQVTCYK 248          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:103032556])

HSP 1 Score: 138.272 bits (347), Expect = 1.862e-39
Identity = 67/175 (38.29%), Postives = 95/175 (54.29%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENR 574
              L+A+     F +   +E+Q+G   LPFP MDK  A VC +++   C    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K                              +GP C+  H  ++ C NY+ GFCP+G  CK+ HP++ LP+ T  +
Sbjct:    2 QELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSK------------------------------FGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQ 146          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9399])

HSP 1 Score: 66.6254 bits (161), Expect = 7.812e-12
Identity = 39/119 (32.77%), Postives = 51/119 (42.86%), Query Frame = 2
Query:  188 GTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAH 541
            G C     CP+ H  D+   VC  +L G CK+ D +C F H     KMP C +F K G C N SC Y+H  V                            C+++I G+CP G +CK  H
Sbjct:  770 GKCNRGSSCPYIHDPDKV-AVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLK-GICNNSSCPYSHVYVS----------------------RKADVCQDFIRGYCPQGEKCKKKH 864          

HSP 2 Score: 59.3066 bits (142), Expect = 1.877e-9
Identity = 41/114 (35.96%), Postives = 53/114 (46.49%), Query Frame = 2
Query:  149 DKCKAPVCNWYLAGTC-ELDDLCPHRH-MNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNRVEIPNCPWYDR-GFCNYGPACKLLHEWK 478
            D  K  VC  +L GTC + D  CP  H ++     VC ++L G+C    SC + H+Y   K   C  F + G C Q E C   H  V    CP + R G C  G  CKL H  +
Sbjct:  783 DPDKVAVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLKGICNN-SSCPYSHVYVSRKADVCQDFIR-GYCPQGEKCKKKHTLV----CPEFSRTGACPKGSKCKLQHRQR 890          

HSP 3 Score: 48.9062 bits (115), Expect = 4.480e-6
Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 2
Query:  125 ATLPFP-KMDKCKAPVCNWYLAGTCELDDLCPHRHMN-DRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNR 397
             T PF  K+ K K PVC+++L G C  +  CP+ H+   R   VC+ ++ G C +G+ C+  H         C  F++ G C +   C   H +
Sbjct:  803 GTCPFSHKVSKEKMPVCSYFLKGICN-NSSCPYSHVYVSRKADVCQDFIRGYCPQGEKCKKKHTL------VCPEFSRTGACPKGSKCKLQHRQ 889          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9399])

HSP 1 Score: 66.6254 bits (161), Expect = 7.869e-12
Identity = 39/119 (32.77%), Postives = 51/119 (42.86%), Query Frame = 2
Query:  188 GTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAH 541
            G C     CP+ H  D+   VC  +L G CK+ D +C F H     KMP C +F K G C N SC Y+H  V                            C+++I G+CP G +CK  H
Sbjct:  770 GKCNRGSSCPYIHDPDKV-AVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLK-GICNNSSCPYSHVYVS----------------------RKADVCQDFIRGYCPQGEKCKKKH 864          

HSP 2 Score: 59.3066 bits (142), Expect = 1.889e-9
Identity = 41/114 (35.96%), Postives = 53/114 (46.49%), Query Frame = 2
Query:  149 DKCKAPVCNWYLAGTC-ELDDLCPHRH-MNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNRVEIPNCPWYDR-GFCNYGPACKLLHEWK 478
            D  K  VC  +L GTC + D  CP  H ++     VC ++L G+C    SC + H+Y   K   C  F + G C Q E C   H  V    CP + R G C  G  CKL H  +
Sbjct:  783 DPDKVAVCTRFLRGTCKQTDGTCPFSHKVSKEKMPVCSYFLKGICNN-SSCPYSHVYVSRKADVCQDFIR-GYCPQGEKCKKKHTLV----CPEFSRTGACPKGSKCKLQHRQR 890          

HSP 3 Score: 48.9062 bits (115), Expect = 4.505e-6
Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 2
Query:  125 ATLPFP-KMDKCKAPVCNWYLAGTCELDDLCPHRHMN-DRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHNR 397
             T PF  K+ K K PVC+++L G C  +  CP+ H+   R   VC+ ++ G C +G+ C+  H         C  F++ G C +   C   H +
Sbjct:  803 GTCPFSHKVSKEKMPVCSYFLKGICN-NSSCPYSHVYVSRKADVCQDFIRGYCPQGEKCKKKHTL------VCPEFSRTGACPKGSKCKLQHRQ 889          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Yeast
Match: YTH1 (Essential RNA-binding component of cleavage and polyadenylation factor; contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation; relocalizes to the cytosol in response to hypoxia [Source:SGD;Acc:S000006311])

HSP 1 Score: 109.768 bits (273), Expect = 2.163e-29
Identity = 65/177 (36.72%), Postives = 96/177 (54.24%), Query Frame = 2
Query:   68 DDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLA----GTCELDDLCPHRHMND--RSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTH--NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGP-ECKYAHPKWLPLPTE 568
            D +K+ F     L ++   +  P         P+C +Y +     +C    LCP +H+    ++  VC+H+L GLCKK D CE+LH Y++ KMP+C FF+K G C Q+  C Y H     +IP C  Y+ GFC  G +C   H  K+ C+ Y+ GFCP G  EC   HP+++ +P E
Sbjct:    7 DTAKYPFKFEPFLRQEYSFSLDP-------DRPICEFYNSREGPKSCPRGPLCPKKHVLPIFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQYLHIDPASKIPKCENYEMGFCPLGSSCPRRHIKKVFCQRYMTGFCPLGKDECDMEHPQFI-IPDE 175          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Nematostella
Match: EDO40074 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8B4])

HSP 1 Score: 188.348 bits (477), Expect = 1.022e-59
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPL 559
            +VA  +     I   L+ QIG  +LPFP MDK  A VC++++ G C     CP RH +     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C Y H   + +I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCPDGP CK+ HP++ LP+
Sbjct:    4 IVASIADITLEIEYQLKNQIGCISLPFPGMDKSSAAVCDFFVKGLCNRGAYCPFRHTSGEKTVVCKHWLRGLCKKGDQCEFLHQYDMTKMPECYFYSKFGECSNKKCQYLHIDPQSKIKDCPWYDRGFCKHGPHCRHRHVRRVLCINYLCGFCPDGPNCKHKHPRFELPV 173          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Nematostella
Match: EDO33924 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SQV2])

HSP 1 Score: 49.2914 bits (116), Expect = 1.719e-7
Identity = 44/135 (32.59%), Postives = 59/135 (43.70%), Query Frame = 2
Query:  149 DKCKAPVCNWYLAGTCE-LDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRV--EIPNCPWYDRGFCNYGPACKLLHEWKIACKNY-INGFCPDGPECKYAH 541
            D  K  VC  +L G C+  D  C   H  D+      +Y+ G  KKG   E         MP C FF K G C N+ C Y+H  V  +   C  + +G+C  G  CK  H   + C+ +   G C  G +CK  H
Sbjct:   31 DPSKVAVCTKFLKGKCKNTDGTCTFSHRIDKEKVY--NYIPGKNKKGSIPE--------NMPVCQFFLK-GTCFNDDCPYSHVNVSNKAAICEDFVKGYCPLGQQCKKKHS--LECEEFTFTGKCSKGHKCKQMH 152          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:101173062])

HSP 1 Score: 226.483 bits (576), Expect = 6.128e-73
Identity = 116/274 (42.34%), Postives = 163/274 (59.49%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNP---QFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            L+A+     F +   +E+Q+G   LPFP MDK  + VC +++ GTC    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+G  CK+ HP++ LP+ T  +    Q            +IQ   K +        + +Q+ N +P   Q N  + +   +       RGP +PL+++TCYKCGEKGHYAN C K +  FL
Sbjct:    4 LLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMKGTCMKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTSEQPPLPQ------------QIQNQGKTAASSGRSSLSLIQLTNSSPGQRQQNNTNIISHQNNMNA--NRGP-RPLDQVTCYKCGEKGHYANKCTKGHLAFL 262          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: cpsf4 (cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:101173062])

HSP 1 Score: 199.904 bits (507), Expect = 1.562e-62
Identity = 103/255 (40.39%), Postives = 149/255 (58.43%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVE--IPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKW-LPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNP---QFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYK 805
            L+A+     F +   +E+Q+G   LPFP MDK  + VC +++ GTC    +CP RH++     VCKH+L GLCKKGD CEFLH YDM+KMP+CYF++K+GEC N+ C + H   E  I +CPWYDRGFC +GP C+  H  ++ C NY+ GFCP+G  CK+ HP++ LP+ T  +    Q            +IQ   K +        + +Q+ N +P   Q N  + +   +       RGP +PL+++TCYK
Sbjct:    4 LLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMKGTCMKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTSEQPPLPQ------------QIQNQGKTAASSGRSSLSLIQLTNSSPGQRQQNNTNIISHQNNMNA--NRGP-RPLDQVTCYK 243          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:101168697])

HSP 1 Score: 62.7734 bits (151), Expect = 1.604e-10
Identity = 55/183 (30.05%), Postives = 78/183 (42.62%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWY-LAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH----NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYI-NGFCPDGPECKYAHPKWLPLPTENRES 580
             SL    S  H A   +   Q  +A +   +  K +   C +Y   G C     C   H  D+   VC  +L G CK+ D +C F H     KMP C +F K G C N  C Y+H    ++ E+  C  + +G+C  G  CK  H   + C ++   G C  G  CK  H + L   + N  S
Sbjct:  608 SSLARPSSTRHLASRAV---QRSIAIIRQARQKKQQKQYCMYYNRFGKCNRGTSCTFIHDPDKV-AVCTRFLRGTCKREDGTCPFSHKVSKEKMPVCSYFLK-GICNNSDCPYSHVYVSSKAEV--CEDFVKGYCPEGEKCKKKHT--LVCSDFFKTGSCSRGSRCKLQHRQRLKRTSSNTSS 781          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: zc3h3 (zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:101168697])

HSP 1 Score: 62.7734 bits (151), Expect = 1.613e-10
Identity = 55/183 (30.05%), Postives = 78/183 (42.62%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWY-LAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGD-SCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTH----NRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYI-NGFCPDGPECKYAHPKWLPLPTENRES 580
             SL    S  H A   +   Q  +A +   +  K +   C +Y   G C     C   H  D+   VC  +L G CK+ D +C F H     KMP C +F K G C N  C Y+H    ++ E+  C  + +G+C  G  CK  H   + C ++   G C  G  CK  H + L   + N  S
Sbjct:  608 SSLARPSSTRHLASRAV---QRSIAIIRQARQKKQQKQYCMYYNRFGKCNRGTSCTFIHDPDKV-AVCTRFLRGTCKREDGTCPFSHKVSKEKMPVCSYFLK-GICNNSDCPYSHVYVSSKAEV--CEDFVKGYCPEGEKCKKKHT--LVCSDFFKTGSCSRGSRCKLQHRQRLKRTSSNTSS 781          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Match: zc3h6 (zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:101161746])

HSP 1 Score: 51.6026 bits (122), Expect = 7.179e-7
Identity = 26/80 (32.50%), Postives = 43/80 (53.75%), Query Frame = 2
Query:  167 VCNWYLAGTCELDDLCPHRH---MNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGEC-QNESCAYTHN 394
            +C ++L G C   + C   H   + D+   +CK YL G C KGD C ++H    ++ P C FF    +C Q ++C ++H+
Sbjct:  319 ICKYFLEGRCIKGEQCKFEHELVVPDKKKELCKFYLQGYCSKGDHCIYMH----NEYP-CKFFHTGAKCYQGDNCKFSHD 393          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000073172.1 (SMESG000073172.1)

HSP 1 Score: 571.237 bits (1471), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNHE 874
            DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNHE
Sbjct:    2 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFLRNHE 275          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000073169.1 (SMESG000073169.1)

HSP 1 Score: 311.227 bits (796), Expect = 4.244e-106
Identity = 151/271 (55.72%), Postives = 187/271 (69.00%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLP-TENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFG--GPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            LVAD   + F +    E+QIG+  LPF KMDK +A VC  +L   C L D CP RH+      VCKHYLNGLCKKGD CE+LH Y+M+KMP+CYF++K+GECQN  C YTH + +I NCPWYDRGFC  GP C   HE KIACKNYINGFC DGP+CK++HPKW PLP  + ++ HRQ W+C +C++PGHKIQFC KL    R++++ ++Q K    + NG       D +G   P + G LKPL EITC+KCGEKGHYAN C KS   FL
Sbjct:    4 LVADVHNYKFIVEAQFEEQIGLGELPFIKMDKSRAGVCQLFLENNCILGDRCPLRHIKGHRTIVCKHYLNGLCKKGDECEYLHEYNMNKMPECYFYSKFGECQNSECMYTHTKFQIKNCPWYDRGFCRNGPNCNFTHERKIACKNYINGFCVDGPDCKFSHPKWWPLPGNDQQDQHRQRWVCHNCHQPGHKIQFCLKLPVDVRQKLQEEMQAKY---KING-------DHYGVYRPGRSGQLKPLEEITCFKCGEKGHYANRCNKSYLAFL 264          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000074889.1 (SMESG000074889.1)

HSP 1 Score: 293.123 bits (749), Expect = 2.369e-99
Identity = 144/268 (53.73%), Postives = 178/268 (66.42%), Query Frame = 2
Query:   53 DSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFN 856
            DS +  +  F F I  L++K++G++TLPF KMDK KAP+C  +L+G C+L + CPHRH+N+ +NTVCKHYLNGLCKKGD+CEFLH YDMSKM DC F      C NE C Y H + EI  CPWYDRGFC  G  C L H  KI C N++NGFC +  +C++AHP W PLP +  E+H+QTWICRHCN  GHKIQFC KLS+ +RE+I  Q+QIKN  P        D    F  P K  P     EI C+ CG KGH +N C + N N
Sbjct:    2 DSFIRHE--FEFNIESLIDKKVGLSTLPFLKMDKSKAPICFGFLSGNCDLGNFCPHRHVNNNANTVCKHYLNGLCKKGDACEFLHAYDMSKMADCQFNVGSERCTNEDCIYNHRKEEIQACPWYDRGFCKLGNTCNLKHVQKIMCNNFLNGFCFEADDCQFAHPIWFPLP-DTHETHKQTWICRHCNGRGHKIQFCNKLSKEEREKILKQIQIKNSTP---ANQSHDNKYVFKRPNKFNP-NQTGEIICFTCGVKGHKSNVCTRKNVN 262          
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Match: SMESG000073125.1 (SMESG000073125.1)

HSP 1 Score: 288.886 bits (738), Expect = 2.443e-97
Identity = 142/273 (52.01%), Postives = 177/273 (64.84%), Query Frame = 2
Query:   59 LVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCELDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFTKYGECQNESCAYTHN--RVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYINGFCPDGPECKYAHPKWLPLPT-ENRESHRQTWICRHCNEPGHKIQFCRKLSEVDRERIRNQLQIKNGNPQFN--GFSKMDCNDQFGGPKKRGPLKPLNEITCYKCGEKGHYANNCKKSNFNFL 862
            +VA+ S   F +   LE Q+G+  LPF KM+K    VC++Y+   C +   CP RH+      VCKH+L GLCKKGD CEFLH YDM+KMP+CYFF+KYGECQN+ C + H     +I +C WYDRGFC  GP CK  H  ++ACKNYINGFCPDG ECK+AH +W PLP  + ++ H+Q W+C HCNE GHKIQFC KL    R++++ +LQ+K  N      GF      D  G    +   KPL EITCYKCGEKGHYAN C K    FL
Sbjct:    4 IVANASGIKFTVESQLEDQVGLGELPFSKMNKSGVGVCHFYMNNICTMGQRCPLRHIKGDRTVVCKHWLRGLCKKGDDCEFLHEYDMNKMPECYFFSKYGECQNKECPFLHIDPSTKIQDCQWYDRGFCRNGPHCKNRHVRRVACKNYINGFCPDGKECKFAHSRWWPLPGYDQQDQHKQRWVCHHCNERGHKIQFCLKLPLEKRQKLQEELQLKYANQNLTNPGF------DGLGHKFDKMSSKPLEEITCYKCGEKGHYANRCSKGYLAFL 270          
The following BLAST results are available for this feature:
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
CPSF47.703e-7341.67cleavage and polyadenylation specific factor 4 [So... [more]
CPSF43.680e-7141.30cleavage and polyadenylation specific factor 4 [So... [more]
CPSF44.584e-5743.89cleavage and polyadenylation specific factor 4 [So... [more]
CPSF4L4.763e-5447.27cleavage and polyadenylation specific factor 4 lik... [more]
CPSF41.995e-5135.40cleavage and polyadenylation specific factor 4 [So... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
cpsf-45.296e-6138.85Cleavage and Polyadenylation Specificity Factor [... [more]
cpsf-45.296e-6138.85Cleavage and Polyadenylation Specificity Factor [... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Clp1.104e-6540.41gene:FBgn0015621 transcript:FBtr0078011[more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
cpsf43.619e-7141.13cleavage and polyadenylation specific factor 4 [So... [more]
zc3h32.201e-1538.52zinc finger CCCH-type containing 3 [Source:ZFIN;Ac... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf4l4.348e-7141.24cleavage and polyadenylation specific factor 4-lik... [more]
ubxn75.641e-7142.12UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5... [more]
ubxn72.879e-6938.94UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5... [more]
cpsf4l2.125e-6138.18cleavage and polyadenylation specific factor 4-lik... [more]
ubxn72.112e-4833.94UBX domain protein 7 [Source:Xenbase;Acc:XB-GENE-5... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Cpsf47.900e-7341.67cleavage and polyadenylation specific factor 4 [So... [more]
Cpsf44.394e-7141.30cleavage and polyadenylation specific factor 4 [So... [more]
Cpsf41.178e-6941.30cleavage and polyadenylation specific factor 4 [So... [more]
Cpsf42.587e-5135.40cleavage and polyadenylation specific factor 4 [So... [more]
Cpsf4l1.016e-5045.61cleavage and polyadenylation specific factor 4-lik... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|O95639|CPSF4_HUMAN3.699e-7241.67Cleavage and polyadenylation specificity factor su... [more]
sp|Q6DJP7|CPSF4_XENLA1.260e-7142.03Cleavage and polyadenylation specificity factor su... [more]
sp|Q66KE3|CPSF4_XENTR2.988e-7042.12Cleavage and polyadenylation specificity factor su... [more]
sp|O19137|CPSF4_BOVIN4.026e-6941.30Cleavage and polyadenylation specificity factor su... [more]
sp|Q5FVR7|CPSF4_RAT8.238e-6941.30Cleavage and polyadenylation specificity factor su... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G4VRQ21.011e-9449.14Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A183Q9N71.011e-9449.14Uncharacterized protein OS=Schistosoma rodhaini OX... [more]
A0A095B3Z91.633e-9449.14Cleavage and polyadenylation specificity factor su... [more]
C1LF641.160e-9348.80Cleavage and polyadenylation specificity factor su... [more]
A0A0X3PVY01.005e-9246.18Uncharacterized protein OS=Schistocephalus solidus... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf42.927e-7043.07cleavage and polyadenylation specific factor 4 [So... [more]
cpsf41.053e-5941.18cleavage and polyadenylation specific factor 4 [So... [more]
cpsf41.862e-3938.29cleavage and polyadenylation specific factor 4 [So... [more]
zc3h37.812e-1232.77zinc finger CCCH-type containing 3 [Source:ZFIN;Ac... [more]
zc3h37.869e-1232.77zinc finger CCCH-type containing 3 [Source:ZFIN;Ac... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
YTH12.163e-2936.72Essential RNA-binding component of cleavage and po... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO400741.022e-5951.18Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO339241.719e-732.59Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cpsf46.128e-7342.34cleavage and polyadenylation specific factor 4 [So... [more]
cpsf41.562e-6240.39cleavage and polyadenylation specific factor 4 [So... [more]
zc3h31.604e-1030.05zinc finger CCCH-type containing 3 [Source:NCBI ge... [more]
zc3h31.613e-1030.05zinc finger CCCH-type containing 3 [Source:NCBI ge... [more]
zc3h67.179e-732.50zinc finger CCCH-type containing 6 [Source:NCBI ge... [more]
back to top
BLAST of Cleavage and polyadenylation specificity factor subunit 4 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000073172.10.000e+0100.00SMESG000073172.1[more]
SMESG000073169.14.244e-10655.72SMESG000073169.1[more]
SMESG000074889.12.369e-9953.73SMESG000074889.1[more]
SMESG000073125.12.443e-9752.01SMESG000073125.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30009393 ID=SMED30009393|Name=Cleavage and polyadenylation specificity factor subunit 4|organism=Schmidtea mediterranea sexual|type=transcript|length=929bp
GTTTTGAAAATGCGATTGAATAATGAATTTAATTTTTATTTAATTAATTA
TGGACTCATTAGTTGCTGATGACTCTAAATTTCATTTTGCAATCAATGAC
TTATTAGAAAAACAAATTGGTGTAGCAACGTTACCATTCCCAAAAATGGA
CAAATGCAAGGCACCAGTTTGCAATTGGTACTTAGCAGGAACATGTGAAC
TTGATGATCTTTGCCCCCATAGGCATATGAACGATCGCTCAAATACAGTA
TGTAAGCACTATTTAAACGGTCTATGTAAAAAAGGAGACAGTTGCGAATT
CCTCCATATGTATGATATGAGTAAAATGCCCGATTGTTATTTTTTCACAA
AATATGGTGAATGTCAAAACGAAAGCTGTGCATATACTCATAATAGAGTT
GAAATCCCGAATTGTCCATGGTACGATCGTGGATTTTGTAATTATGGCCC
CGCCTGTAAATTATTGCACGAATGGAAAATTGCTTGCAAAAACTACATTA
ATGGTTTCTGTCCCGATGGACCGGAATGTAAATATGCCCATCCTAAATGG
TTACCCTTGCCCACTGAAAATAGAGAATCTCATAGACAAACTTGGATTTG
TCGACATTGCAATGAACCTGGACATAAAATCCAGTTTTGTCGGAAATTAT
CAGAAGTTGACAGAGAACGAATTAGAAATCAATTGCAAATTAAAAATGGA
AATCCGCAGTTTAATGGATTTTCTAAAATGGATTGCAATGATCAATTTGG
AGGACCCAAAAAGCGGGGTCCTCTAAAACCATTAAATGAAATTACTTGTT
ACAAATGCGGCGAAAAGGGCCATTATGCCAATAATTGTAAAAAGAGCAAC
TTTAATTTCCTAAGAAATCACGAATAATAATTTATAATTACAAATATTTT
ATATATTTCTATTACGAATTATATAGCCG
back to top

protein sequence of SMED30009393-orf-1

>SMED30009393-orf-1 ID=SMED30009393-orf-1|Name=SMED30009393-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=276bp
MDSLVADDSKFHFAINDLLEKQIGVATLPFPKMDKCKAPVCNWYLAGTCE
LDDLCPHRHMNDRSNTVCKHYLNGLCKKGDSCEFLHMYDMSKMPDCYFFT
KYGECQNESCAYTHNRVEIPNCPWYDRGFCNYGPACKLLHEWKIACKNYI
NGFCPDGPECKYAHPKWLPLPTENRESHRQTWICRHCNEPGHKIQFCRKL
SEVDRERIRNQLQIKNGNPQFNGFSKMDCNDQFGGPKKRGPLKPLNEITC
YKCGEKGHYANNCKKSNFNFLRNHE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000014zeta neoblast
PLANA:0000419prepharyngeal region
PLANA:0000420parapharyngeal region
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR041367Znf-CCCH_4
IPR036855Znf_CCCH_sf
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
IPR000571Znf_CCCH
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0046872metal ion binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 90..116
e-value: 0.027
score: 23.6
coord: 143..166
e-value: 0.0025
score: 27.1
coord: 35..61
e-value: 0.43
score: 19.2
coord: 117..142
e-value: 0.028
score: 23.6
coord: 63..88
e-value: 1.5E-5
score: 34.4
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 146..166
e-value: 1.2E-4
score: 21.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 62..89
score: 14.615
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 116..143
score: 11.582
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 90..114
score: 8.146
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 35..59
score: 8.484
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 145..167
score: 12.972
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 183..199
e-value: 0.23
score: 15.1
coord: 249..265
e-value: 4.0E-4
score: 29.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 249..265
e-value: 1.4E-6
score: 28.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 250..265
score: 10.708
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 67..86
e-value: 6.6E-6
score: 25.8
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 119..199
e-value: 6.9E-9
score: 37.6
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 226..269
e-value: 1.3E-6
score: 30.2
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 56..118
e-value: 3.3E-22
score: 80.2
NoneNo IPR availablePANTHERPTHR23102ZINC FINGER CLIPPER -RELATEDcoord: 1..274
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 62..86
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 143..165
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 235..265