RanBP-type and C3HC4-type zinc finger containing 1

Overview


Name	RanBP-type and C3HC4-type zinc finger containing 1
Smed ID	SMED30009348
Length (bp)	943

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RanBP-type and C3HC4-type zinc finger containing 1 (SMED30009348) t-SNE clustered cells

Violin plots show distribution of expression levels for RanBP-type and C3HC4-type zinc finger containing 1 (SMED30009348) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RanBP-type and C3HC4-type zinc finger containing 1 (SMED30009348) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30009348

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30009348	h1SMcG0008568	dd_Smed_v4_3486_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30009348	h1SMcG0008568	dd_Smed_v4_3486_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30009348	h1SMcG0008568	dd_Smed_v4_3486_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30009348	h1SMcG0008568	dd_Smed_v4_3486_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
Match: RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:HGNC Symbol;Acc:HGNC:15864])

HSP 1 Score: 88.5817 bits (218), Expect = 5.718e-19
Identity = 76/254 (29.92%), Postives = 119/254 (46.85%), Query Frame = 3

Query:  114 QMKSLKDLENFLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQ------HQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Q   L      L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       C   + + +   +L  E++  F    +          Y C   +CK +    D  N+  C  C  +NC +C A H+Q       +   + A ++    +   ++K+     + +GE M CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  222 QHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDN---TYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM----LQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 468

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
Match: RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:HGNC Symbol;Acc:HGNC:15864])

HSP 1 Score: 88.5817 bits (218), Expect = 6.599e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 3

Query:  144 FLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQ------HQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
             L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       C   + + +   +L  E++  F    +          Y C   +CK +    D  N+  C  C  +NC +C A H+Q       +   + A ++    +   ++K+     + +GE M CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  274 VLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDN---TYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM----LQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 510

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
Match: RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:HGNC Symbol;Acc:HGNC:15864])

HSP 1 Score: 81.2629 bits (199), Expect = 8.191e-17
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 3

Query:  426 YPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQ------HQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Y C   +CK +    D  N+  C  C  +NC +C A H+Q       +   + A ++    +   ++K+     + +GE M CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  199 YHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM----LQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 340

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
Match: RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:HGNC Symbol;Acc:HGNC:15864])

HSP 1 Score: 81.2629 bits (199), Expect = 8.191e-17
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 3

Query:  426 YPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQ------HQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Y C   +CK +    D  N+  C  C  +NC +C A H+Q       +   + A ++    +   ++K+     + +GE M CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  199 YHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM----LQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 340

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
Match: CUL9 (cullin 9 [Source:HGNC Symbol;Acc:HGNC:15982])

HSP 1 Score: 50.0618 bits (118), Expect = 4.448e-6
Identity = 54/216 (25.00%), Postives = 89/216 (41.20%), Query Frame = 3

Query:  168 CPVCESP----ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNE-DNLYPCYG-ENCKFSIKRDG-NNQQECVRCGTINCYICGAFHKQH--QTC---EMWAADNPEI------IKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGP 761
            CPVC SP    +++ S+  C H+CC+SC  ++  LTT   +   +N    +  CP          I+     ++   K L+  Y+    NL  C   + C   + R G      C +CG  +C+ C +F + H   +C     W  D           + ++L KL ++          CP C+   E  +GC  + CA C    C+   ++ W P
Sbjct: 2042 CPVCVSPLGCDDDLPSLC-CMHYCCKSCWNEY--LTTRIEQNLVLNCTCPIADCPAQPTGAFIRAIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQGLGCGTTCSKCGWASCFNC-SFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLISKR---------CPSCQAPIEKNEGCLHMTCAKCNHGFCWRCLKS-WKP 2243

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Celegans
Match: C17H11.6 (RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A0K3AYH3])

HSP 1 Score: 47.3654 bits (111), Expect = 9.387e-6
Identity = 56/217 (25.81%), Postives = 91/217 (41.94%), Query Frame = 3

Query:  168 CPVCESP---ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCP---CIIQDNQCFDILEK-----ENHVAFNRKRLMHRYMNEDNLYPCYGENCKF---SIKRDGNNQQECVR--CGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNL---------MKLYNEDKITKGEGMYCPKCKMFF-EVTQG-CDAVRCAICLLDICFL 737
            CP+C +         + GC H  CR+CL Q++ L+    R        + +PCP     +  N    ++       E + AF+ +R +   M E +   C   +C F   + K     Q +C R  CGT+ CY C      +QTC+   A  PE  K R L              +  +  G+   CP+CK +  ++  G C+ + C +C  + C+L
Sbjct:   55 CPLCAAKMPGSAFPKLKGCQHRSCRACLRQYVELSITENR--------VEVPCPECSSYLHPNDIKMLIGDIPTLIEKYEAFSLRRYL---MTEADARWCPAPDCGFVFIATKCAACPQLKCQRPDCGTLFCYHCKREWHSNQTCD--EARRPEKRKSRGLAFEEIMRTGFHQSADSTLKPGDVKACPRCKTYIVKMDDGSCNHMVCTMCNAEFCWL 258

[Close]

Query:  168 CPVCESP---ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCP---CIIQDNQCFDILEK-----ENHVAFNRKRLMHRYMNEDNLYPCYGENCKF---SIKRDGNNQQECVR--CGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNL---------MKLYNEDKITKGEGMYCPKCKMFF-EVTQG-CDAVRCAICLLDICFL 737
            CP+C +         + GC H  CR+CL Q++ L+    R        + +PCP     +  N    ++       E + AF+ +R +   M E +   C   +C F   + K     Q +C R  CGT+ CY C      +QTC+   A  PE  K R L              +  +  G+   CP+CK +  ++  G C+ + C +C  + C+L
Sbjct:   55 CPLCAAKMPGSAFPKLKGCQHRSCRACLRQYVELSITENR--------VEVPCPECSSYLHPNDIKMLIGDIPTLIEKYEAFSLRRYL---MTEADARWCPAPDCGFVFIATKCAACPQLKCQRPDCGTLFCYHCKREWHSNQTCD--EARRPEKRKSRGLAFEEIMRTGFHQSADSTLKPGDVKACPRCKTYIVKMDDGSCNHMVCTMCNAEFCWL 258

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Fly
Match: LUBEL (gene:FBgn0031857 transcript:FBtr0331216)

HSP 1 Score: 55.8398 bits (133), Expect = 2.673e-8
Identity = 51/239 (21.34%), Postives = 96/239 (40.17%), Query Frame = 3

Query:  108 IWQMKSLKDLENFLLTKKRICPVCES--PEN-IESIIGCNHHCCRSCLEQHILL-----TTYPPRCPFMNVFPLLLPCPCIIQDNQCFD---------------ILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYIC-GAFHKQHQ--TCEM---WAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQ-GCDAVRCAICLLDICF 734
            +W  +   DL+  +   ++ C +C +  P N + S++ C H CC+ C + +  +     +     CPF  +       P +  + Q  D               IL+ + H  F RK      + + N   C   +  F   R    +  C  CG++ C  C   + +QH+  +CE    W  +N   ++ + + +   ++      G+ CPKCK  + + + GC    C  C  + C+
Sbjct: 2494 LWAARECSDLDQAIAMLQQECELCMNSYPMNQMVSMLKCLHKCCKQCAKSYFTVQITDRSINDCSCPFCKL-------PELSNEAQHEDEHLEYFSNLDIFLKSILDNDVHELFQRKLRDRSLLQDPNFKWCIQCSSGF-FARPKQKRLICPDCGSVTCAQCRKPWERQHEGSSCEAYLEWKRENDPELQAQGVQEHLAQN------GIDCPKCKFRYSLARGGCMHFTCTQCKFEFCY 2718

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Fly
Match: LUBEL (gene:FBgn0031857 transcript:FBtr0331220)

HSP 1 Score: 55.8398 bits (133), Expect = 2.893e-8
Identity = 51/239 (21.34%), Postives = 96/239 (40.17%), Query Frame = 3

Query:  108 IWQMKSLKDLENFLLTKKRICPVCES--PEN-IESIIGCNHHCCRSCLEQHILL-----TTYPPRCPFMNVFPLLLPCPCIIQDNQCFD---------------ILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYIC-GAFHKQHQ--TCEM---WAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQ-GCDAVRCAICLLDICF 734
            +W  +   DL+  +   ++ C +C +  P N + S++ C H CC+ C + +  +     +     CPF  +       P +  + Q  D               IL+ + H  F RK      + + N   C   +  F   R    +  C  CG++ C  C   + +QH+  +CE    W  +N   ++ + + +   ++      G+ CPKCK  + + + GC    C  C  + C+
Sbjct: 2441 LWAARECSDLDQAIAMLQQECELCMNSYPMNQMVSMLKCLHKCCKQCAKSYFTVQITDRSINDCSCPFCKL-------PELSNEAQHEDEHLEYFSNLDIFLKSILDNDVHELFQRKLRDRSLLQDPNFKWCIQCSSGF-FARPKQKRLICPDCGSVTCAQCRKPWERQHEGSSCEAYLEWKRENDPELQAQGVQEHLAQN------GIDCPKCKFRYSLARGGCMHFTCTQCKFEFCY 2665

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Fly
Match: LUBEL (gene:FBgn0031857 transcript:FBtr0331218)

HSP 1 Score: 55.8398 bits (133), Expect = 2.894e-8
Identity = 51/239 (21.34%), Postives = 96/239 (40.17%), Query Frame = 3

Query:  108 IWQMKSLKDLENFLLTKKRICPVCES--PEN-IESIIGCNHHCCRSCLEQHILL-----TTYPPRCPFMNVFPLLLPCPCIIQDNQCFD---------------ILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYIC-GAFHKQHQ--TCEM---WAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQ-GCDAVRCAICLLDICF 734
            +W  +   DL+  +   ++ C +C +  P N + S++ C H CC+ C + +  +     +     CPF  +       P +  + Q  D               IL+ + H  F RK      + + N   C   +  F   R    +  C  CG++ C  C   + +QH+  +CE    W  +N   ++ + + +   ++      G+ CPKCK  + + + GC    C  C  + C+
Sbjct: 2453 LWAARECSDLDQAIAMLQQECELCMNSYPMNQMVSMLKCLHKCCKQCAKSYFTVQITDRSINDCSCPFCKL-------PELSNEAQHEDEHLEYFSNLDIFLKSILDNDVHELFQRKLRDRSLLQDPNFKWCIQCSSGF-FARPKQKRLICPDCGSVTCAQCRKPWERQHEGSSCEAYLEWKRENDPELQAQGVQEHLAQN------GIDCPKCKFRYSLARGGCMHFTCTQCKFEFCY 2677

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Fly
Match: LUBEL (gene:FBgn0031857 transcript:FBtr0331221)

HSP 1 Score: 55.8398 bits (133), Expect = 3.160e-8
Identity = 51/239 (21.34%), Postives = 96/239 (40.17%), Query Frame = 3

Query:  108 IWQMKSLKDLENFLLTKKRICPVCES--PEN-IESIIGCNHHCCRSCLEQHILL-----TTYPPRCPFMNVFPLLLPCPCIIQDNQCFD---------------ILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYIC-GAFHKQHQ--TCEM---WAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQ-GCDAVRCAICLLDICF 734
            +W  +   DL+  +   ++ C +C +  P N + S++ C H CC+ C + +  +     +     CPF  +       P +  + Q  D               IL+ + H  F RK      + + N   C   +  F   R    +  C  CG++ C  C   + +QH+  +CE    W  +N   ++ + + +   ++      G+ CPKCK  + + + GC    C  C  + C+
Sbjct: 2400 LWAARECSDLDQAIAMLQQECELCMNSYPMNQMVSMLKCLHKCCKQCAKSYFTVQITDRSINDCSCPFCKL-------PELSNEAQHEDEHLEYFSNLDIFLKSILDNDVHELFQRKLRDRSLLQDPNFKWCIQCSSGF-FARPKQKRLICPDCGSVTCAQCRKPWERQHEGSSCEAYLEWKRENDPELQAQGVQEHLAQN------GIDCPKCKFRYSLARGGCMHFTCTQCKFEFCY 2624

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Zebrafish
Match: rbck1 (RanBP-type and C3HC4-type zinc finger containing 1 [Source:ZFIN;Acc:ZDB-GENE-040704-3])

HSP 1 Score: 112.464 bits (280), Expect = 1.901e-27
Identity = 76/218 (34.86%), Postives = 110/218 (50.46%), Query Frame = 3

Query:  213 CNHHCCRSCLEQHILLTTYPPRC-PFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHK-----QHQTCEMWAADNPEIIKGRNLMKLYNEDKITK-GEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C H  CR CL+  ++       C P+ +       C C +QD +   +L ++ +  F   RL       +N Y C   +C  + I  D  N+ +C  C   NC +C A HK     ++Q      A N E  +    M     D++ K GE M CPKC++  +   GCD + C +C  +IC++TKQARWGP G GD SGGCKC VNG+ C+  C++CH
Sbjct:  305 CLHSFCRDCLKGTVVNCLDAEVCCPYGDN---AYACNCKLQDREIKSLLTQDEYQKFLELRLNIAESRSENSYHCKTPDCAGWCIFEDDVNEFKCDICNETNCLLCKAIHKGMNCKEYQDDLRVRAQNDEAARQTTEML----DQLLKNGEAMNCPKCQVIVQKKDGCDWICCLMCKTEICWVTKQARWGPLGAGDTSGGCKCRVNGVLCHPQCQNCH 515

[Close]

Query:  213 CNHHCCRSCLEQHILLTTYPPRC-PFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHK-----QHQTCEMWAADNPEIIKGRNLMKLYNEDKITK-GEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C H  CR CL+  ++       C P+ +       C C +QD +   +L ++ +  F   RL       +N Y C   +C  + I  D  N+ +C  C   NC +C A HK     ++Q      A N E  +    M     D++ K GE M CPKC++  +   GCD + C +C  +IC++TKQARWGP G GD SGGCKC VNG+ C+  C++CH
Sbjct:  305 CLHSFCRDCLKGTVVNCLDAEVCCPYGDN---AYACNCKLQDREIKSLLTQDEYQKFLELRLNIAESRSENSYHCKTPDCAGWCIFEDDVNEFKCDICNETNCLLCKAIHKGMNCKEYQDDLRVRAQNDEAARQTTEML----DQLLKNGEAMNCPKCQVIVQKKDGCDWICCLMCKTEICWVTKQARWGPLGAGDTSGGCKCRVNGVLCHPQCQNCH 515

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Zebrafish
Match: shrprbck1r (sharpin and rbck1 related [Source:NCBI gene;Acc:569903])

HSP 1 Score: 109.383 bits (272), Expect = 4.196e-26
Identity = 74/236 (31.36%), Postives = 122/236 (51.69%), Query Frame = 3

Query:  162 RICPV-CESPENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQT-CEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            RIC V  ES E +  +  C H  C+ CL   IL++  P   CP+ +       C C++Q+ +   ++  +++  + ++ L       +  Y C   +C  + +  D  N   C  C   NC +C A H     KQ+Q      A ++    + R+L+K      +  GE M+CP+C +  +  +GCD +RC +C  +IC++T+  RWGP+G GDISGGC+C VN  +C+  C++CH
Sbjct:  487 RICYVELESGEGV-LLRECLHCFCKECLRSVILMSEDPQVACPYRDES---YACDCVLQEREIRALVSVDDYQHWLQRGLSVAESRCEGSYHCATADCPGWCVYEDTVNTFHCPVCKKQNCLLCKAIHEGMNCKQYQDDLTARAINDSAARRTRDLLKTL----VNSGEAMHCPQCGIIVQKKEGCDWLRCTVCHTEICWVTRGPRWGPKGPGDISGGCRCNVNKQRCHPKCQNCH 714

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Zebrafish
Match: rbck1 (RanBP-type and C3HC4-type zinc finger containing 1 [Source:ZFIN;Acc:ZDB-GENE-040704-3])

HSP 1 Score: 98.5969 bits (244), Expect = 1.528e-24
Identity = 60/166 (36.14%), Postives = 85/166 (51.20%), Query Frame = 3

Query:  351 ILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHK-----QHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENC 830
            +L ++ +  F   RL       +N Y C   +C  + I  D  N+ +C  C   NC +C A HK     ++Q      A N E  +    M    +  +  GE M CPKC++  +   GCD + C +C  +IC++TKQARWGP G GD SGGCKC VNG+ C+  C
Sbjct:   11 LLTQDEYQKFLELRLNIAESRSENSYHCKTPDCAGWCIFEDDVNEFKCDICNETNCLLCKAIHKGMNCKEYQDDLRVRAQNDEAARQTTEML---DQLLKNGEAMNCPKCQVIVQKKDGCDWICCLMCKTEICWVTKQARWGPLGAGDTSGGCKCRVNGVLCHPQC 173

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
Match: ENSXETT00000033448.1 (RanBP-type and C3HC4-type zinc finger containing 1 [Source:NCBI gene;Acc:100491300])

HSP 1 Score: 111.694 bits (278), Expect = 3.142e-28
Identity = 70/217 (32.26%), Postives = 105/217 (48.39%), Query Frame = 3

Query:  213 CNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C H  CR CL Q +     P   CPF +       C   +Q  +   ++ +E +  F  + L+       + Y C   +C+ + +  D  N+  C  C   NC  C A H     +++Q      A N    +  N M    +  +  GE MYCP C++  +   GCD +RC +C  +IC++TK  RWGPQG GD SGGC+C +NG KC+  C++CH
Sbjct:   72 CLHSFCRECLRQLVNCCEEPEVSCPFRDE---TYACNSKLQQREIRALVAQEEYSRFLERGLVVAESRSHDSYHCRTADCRGWCVYEDSVNEFTCPICHAQNCLTCKAIHDGMNCREYQDDLRIRAQNDAAARQTNDML---KTLVQTGEAMYCPVCQIIVQKKDGCDWIRCTMCQTEICWVTKGPRWGPQGPGDTSGGCQCNINGKKCDPRCQNCH 282

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
Match: cul9 (cullin 9 [Source:NCBI gene;Acc:100145662])

HSP 1 Score: 50.8322 bits (120), Expect = 2.289e-6
Identity = 53/205 (25.85%), Postives = 90/205 (43.90%), Query Frame = 3

Query:  168 CPVCESP---ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCP---CIIQDNQCF--DILEKENHVAFNRKRLMHRYM-NEDNLYPCYG-ENCKFSIKRDG-NNQQECVRCGTINCYICGAFHKQH--QTCEMWAA--DNPEIIKGRNLMKLYNEDK-ITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICF 734
            CPVC SP         + C H CC+SC +++  LTT   +   +N       CP   C+ Q    F   I+  +  +    K L+  ++ N  NL  C   + C   + ++G  +   C +C  ++C+ C +F + H   +C   +   D+    +G   M +  + K +TK    +CP C+   E  +GC  + CA C    C+
Sbjct: 2042 CPVCVSPLSPAEHHPTLCCQHLCCKSCWKEY--LTTRIEQNLALNC-----TCPTTDCLAQPTSDFISKIITSKEVIEKYEKSLLRGFVENCSNLTWCTNPQGCDRVLCKEGLGSGAACTKCSWLSCFNC-SFPEAHYPASCSHMSQWMDDGGFYEG---MTVEAQSKHLTKLISKHCPSCQAPIEKNEGCLHMTCAKCNHGFCW 2235

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
Match: cul9 (cullin 9 [Source:NCBI gene;Acc:100145662])

HSP 1 Score: 50.447 bits (119), Expect = 3.402e-6
Identity = 53/205 (25.85%), Postives = 90/205 (43.90%), Query Frame = 3

Query:  168 CPVCESP---ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCP---CIIQDNQCF--DILEKENHVAFNRKRLMHRYM-NEDNLYPCYG-ENCKFSIKRDG-NNQQECVRCGTINCYICGAFHKQH--QTCEMWAA--DNPEIIKGRNLMKLYNEDK-ITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICF 734
            CPVC SP         + C H CC+SC +++  LTT   +   +N       CP   C+ Q    F   I+  +  +    K L+  ++ N  NL  C   + C   + ++G  +   C +C  ++C+ C +F + H   +C   +   D+    +G   M +  + K +TK    +CP C+   E  +GC  + CA C    C+
Sbjct: 2037 CPVCVSPLSPAEHHPTLCCQHLCCKSCWKEY--LTTRIEQNLALNC-----TCPTTDCLAQPTSDFISKIITSKEVIEKYEKSLLRGFVENCSNLTWCTNPQGCDRVLCKEGLGSGAACTKCSWLSCFNC-SFPEAHYPASCSHMSQWMDDGGFYEG---MTVEAQSKHLTKLISKHCPSCQAPIEKNEGCLHMTCAKCNHGFCW 2230

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
Match: cul9 (cullin 9 [Source:NCBI gene;Acc:100145662])

HSP 1 Score: 50.0618 bits (118), Expect = 4.321e-6
Identity = 53/205 (25.85%), Postives = 90/205 (43.90%), Query Frame = 3

Query:  168 CPVCESP---ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCP---CIIQDNQCF--DILEKENHVAFNRKRLMHRYM-NEDNLYPCYG-ENCKFSIKRDG-NNQQECVRCGTINCYICGAFHKQH--QTCEMWAA--DNPEIIKGRNLMKLYNEDK-ITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICF 734
            CPVC SP         + C H CC+SC +++  LTT   +   +N       CP   C+ Q    F   I+  +  +    K L+  ++ N  NL  C   + C   + ++G  +   C +C  ++C+ C +F + H   +C   +   D+    +G   M +  + K +TK    +CP C+   E  +GC  + CA C    C+
Sbjct: 1739 CPVCVSPLSPAEHHPTLCCQHLCCKSCWKEY--LTTRIEQNLALNC-----TCPTTDCLAQPTSDFISKIITSKEVIEKYEKSLLRGFVENCSNLTWCTNPQGCDRVLCKEGLGSGAACTKCSWLSCFNC-SFPEAHYPASCSHMSQWMDDGGFYEG---MTVEAQSKHLTKLISKHCPSCQAPIEKNEGCLHMTCAKCNHGFCW 1932

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
Match: cul9 (cullin 9 [Source:NCBI gene;Acc:100145662])

HSP 1 Score: 49.6766 bits (117), Expect = 4.538e-6
Identity = 53/205 (25.85%), Postives = 90/205 (43.90%), Query Frame = 3

Query:  168 CPVCESP---ENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCP---CIIQDNQCF--DILEKENHVAFNRKRLMHRYM-NEDNLYPCYG-ENCKFSIKRDG-NNQQECVRCGTINCYICGAFHKQH--QTCEMWAA--DNPEIIKGRNLMKLYNEDK-ITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICF 734
            CPVC SP         + C H CC+SC +++  LTT   +   +N       CP   C+ Q    F   I+  +  +    K L+  ++ N  NL  C   + C   + ++G  +   C +C  ++C+ C +F + H   +C   +   D+    +G   M +  + K +TK    +CP C+   E  +GC  + CA C    C+
Sbjct: 1670 CPVCVSPLSPAEHHPTLCCQHLCCKSCWKEY--LTTRIEQNLALNC-----TCPTTDCLAQPTSDFISKIITSKEVIEKYEKSLLRGFVENCSNLTWCTNPQGCDRVLCKEGLGSGAACTKCSWLSCFNC-SFPEAHYPASCSHMSQWMDDGGFYEG---MTVEAQSKHLTKLISKHCPSCQAPIEKNEGCLHMTCAKCNHGFCW 1863

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Mouse
Match: Rbck1 (RanBP-type and C3HC4-type zinc finger containing 1 [Source:MGI Symbol;Acc:MGI:1344372])

HSP 1 Score: 95.1301 bits (235), Expect = 2.297e-21
Identity = 78/253 (30.83%), Postives = 121/253 (47.83%), Query Frame = 3

Query:  114 QMKSLKDLENFLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITK-----GEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Q   L+     L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       CP  + + +   +L  E++  F    +          Y C   +C+ +    D  N+  C  C  +NC +C A H +H  C  +  D    ++ +N +      ++ K     GE M+CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  262 QHVQLEQRSLVLNTEPTECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDS---TYSCPGKLLEREIRALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIH-EHMNCREYQDDL--ALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 508

[Close]

Query:  114 QMKSLKDLENFLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITK-----GEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Q   L+     L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       CP  + + +   +L  E++  F    +          Y C   +C+ +    D  N+  C  C  +NC +C A H +H  C  +  D    ++ +N +      ++ K     GE M+CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  262 QHVQLEQRSLVLNTEPTECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDS---TYSCPGKLLEREIRALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIH-EHMNCREYQDDL--ALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 508

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
Match: sp|A9JTG5|HOIL1_DANRE (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Danio rerio OX=7955 GN=rbck1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.167e-25
Identity = 74/236 (31.36%), Postives = 122/236 (51.69%), Query Frame = 3

Query:  162 RICPV-CESPENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQT-CEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            RIC V  ES E +  +  C H  C+ CL   IL++  P   CP+ +       C C++Q+ +   ++  +++  + ++ L       +  Y C   +C  + +  D  N   C  C   NC +C A H     KQ+Q      A ++    + R+L+K      +  GE M+CP+C +  +  +GCD +RC +C  +IC++T+  RWGP+G GDISGGC+C VN  +C+  C++CH
Sbjct:  487 RICYVELESGEGV-LLRECLHCFCKECLRSVILMSEDPQVACPYRDES---YACDCVLQEREIRALVSVDDYQHWLQRGLSVAESRCEGSYHCATADCPGWCVYEDTVNTFHCPVCKKQNCLLCKAIHEGMNCKQYQDDLTARAINDSAARRTRDLLKTL----VNSGEAMHCPQCGIIVQKKEGCDWLRCTVCHTEICWVTRGPRWGPKGPGDISGGCRCNVNKQRCHPKCQNCH 714

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
Match: sp|E6ZIJ1|HOIL1_DICLA (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Dicentrarchus labrax OX=13489 GN=rbck1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.671e-23
Identity = 72/235 (30.64%), Postives = 113/235 (48.09%), Query Frame = 3

Query:  162 RICPVCESPENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENC-KFSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQT-CEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            RIC +   P     +  C H  CR CL   I+L+  P   CP+ +       C C +Q+ +   ++  E +  + ++ L       +  Y C   +C  + +  D  N   C  C   NC IC + H     KQ+Q      A ++    +   L+K      +  GE M+CP+C +  +   GCD +RC +C  +IC++T+  RWGP+G GD SGGC+C VN  KC+  C++CH
Sbjct:  480 RICYMDLQPGEGVLLRECLHCFCRECLRSVIMLSEEPEVSCPYRDD---TYSCACSLQEREIRALVPAEEYERWLQRGLSVAESRCEGSYHCATPDCLGWCVYEDTVNVFHCPVCRKHNCLICKSIHEGMNCKQYQDDLAARAINDSAARRTTQLLKTL----VQSGEAMHCPQCGIIVQKRDGCDWLRCTVCHTEICWVTRGPRWGPKGPGDTSGGCRCNVNNQKCHPKCQNCH 707

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
Match: sp|Q9WUB0|HOIL1_MOUSE (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Rbck1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.607e-20
Identity = 78/253 (30.83%), Postives = 121/253 (47.83%), Query Frame = 3

Query:  114 QMKSLKDLENFLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITK-----GEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Q   L+     L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       CP  + + +   +L  E++  F    +          Y C   +C+ +    D  N+  C  C  +NC +C A H +H  C  +  D    ++ +N +      ++ K     GE M+CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  262 QHVQLEQRSLVLNTEPTECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDS---TYSCPGKLLEREIRALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIH-EHMNCREYQDDL--ALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 508

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
Match: sp|Q62921|HOIL1_RAT (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Rbck1 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 7.606e-20
Identity = 78/253 (30.83%), Postives = 120/253 (47.43%), Query Frame = 3

Query:  114 QMKSLKDLENFLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITK-----GEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            Q   L+     L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       CP  + + +   +L  E++  F    +          Y C   +C+ +    D  N+  C  C  +NC +C A H++   C  +  D     + RN +      ++ +     GE MYCP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  262 QHVQLEQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDN---TYSCPGKLLEREIRALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHER-MNCREYQDDLAH--RARNDVAAQQTTEMLRVMLQQGEAMYCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 508

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
Match: sp|Q9BYM8|HOIL1_HUMAN (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=RBCK1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.169e-18
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 3

Query:  144 FLLTKKRICPVCES---PENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQ------HQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
             L T+   CPVC S   P     +  C H  CR CL+  I  +      CPF++       C   + + +   +L  E++  F    +          Y C   +CK +    D  N+  C  C  +NC +C A H+Q       +   + A ++    +   ++K+     + +GE M CP+C++  +   GCD +RC +C  +IC++TK  RWGP G GD SGGC+C VNGI C+ +C++CH
Sbjct:  274 VLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDN---TYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM----LQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 510

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
Match: W5JD78 (Ubiquitin conjugating enzyme 7 interacting protein OS=Anopheles darlingi OX=43151 GN=AND_007582 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.582e-33
Identity = 80/235 (34.04%), Postives = 118/235 (50.21%), Query Frame = 3

Query:  168 CPVCESP-ENIESII--GCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            CP+C  P +  E I+   C H  C+ CL   I  +     RCP+ +    +  C  +IQ  +   ++ KE + A   K +       DN + C   NC+ + I  D  NQ +C  C  +NC  C   H     KQ+Q  +   +D    I+ R    +  E  I KG+ + CP C++      GCD ++C++C  +IC++T+ ARWGP G GD SGGC+C VNGIKC+  C  CH
Sbjct: 1747 CPICFGPFQPYEGIVLRDCLHSFCKQCLISTIQYSDEAEIRCPYSDA---VYSCESVIQQREIKALVSKELYEAHLAKSIQQAESKIDNTFHCRTPNCRGWCIYEDNVNQFKCPVCTIVNCLTCRVIHDGLDCKQYQ--DRMNSDCDTNIEARRTKAMLQE-MIEKGDALNCPTCQVIVMKKWGCDWLKCSMCKTEICWVTRGARWGPAGKGDTSGGCRCGVNGIKCHPKCNYCH 1975

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
Match: A0A084VMC3 (AGAP009239-PA-like protein OS=Anopheles sinensis OX=74873 GN=ZHAS_00006445 PE=4 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.080e-32
Identity = 79/235 (33.62%), Postives = 118/235 (50.21%), Query Frame = 3

Query:  168 CPVCESP-ENIESII--GCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            CP+C  P +  E I+   C H  C+ CL   I  +     RCP+ +    +  C  +IQ  +   ++ KE + A   K +       DN + C   NC+ + I  D  NQ +C  C  +NC  C   H     KQ+Q  +   +D    ++ R   K   +D I KG+ + CP C++      GCD ++C++C  +IC++T+  RWGP G GD SGGC+C VNGIKC+  C  CH
Sbjct: 1834 CPICFGPFQPYEGIVLRDCLHSFCKQCLISTIQYSEDAAIRCPYSDA---VYSCESVIQQREIKALVSKELYEAHLAKSIQQAESAIDNTFHCRTPNCRGWCIYEDNVNQFKCPVCRIVNCLTCRVIHDGLDCKQYQ--DRMNSDCDTNLEARR-TKAMLQDMIEKGDALNCPTCQVIVMKKWGCDWLKCSMCKTEICWVTRGHRWGPAGKGDTSGGCRCGVNGIKCHPKCNYCH 2062

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
Match: A0A182KU91 (Uncharacterized protein OS=Anopheles coluzzii OX=1518534 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.111e-31
Identity = 78/235 (33.19%), Postives = 116/235 (49.36%), Query Frame = 3

Query:  168 CPVCESP-ENIESII--GCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            CP+C    +  E I+   C H  C+ CL   I  +     RCP+ +    +  C  +IQ  +   ++ KE + A   K +       DN + C   NC+ + I  D  NQ +C  C  +NC  C   H     KQ+Q  +   +D    ++ R    +  E  I KGE + CP C++      GCD ++C++C  +IC++T+  RWGP G GD SGGC+C VNGIKC+  C  CH
Sbjct: 1798 CPICFGAFQPYEGIVLRDCLHSFCKQCLISTIQYSEDAAIRCPYSDA---VYSCESVIQQREIKALVSKELYEAHLAKSIQQAESTIDNTFHCRTPNCRGWCIYEDNVNQFKCPVCRIVNCLTCRVIHDGLDCKQYQ--DRMNSDCDTNLEARRTKAMLQE-MIEKGEALNCPTCQVIVMKKWGCDWLKCSMCKTEICWVTRGHRWGPAGKGDTSGGCRCGVNGIKCHPKCNYCH 2026

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
Match: A0A182M3Z3 (Uncharacterized protein OS=Anopheles culicifacies OX=139723 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.178e-31
Identity = 77/235 (32.77%), Postives = 116/235 (49.36%), Query Frame = 3

Query:  168 CPVCESP-ENIESII--GCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            CP+C    +  E I+   C H  C+ CL   I  +     RCP+ +    +  C  +IQ  +   ++ KE + A   K +       DN + C   NC+ + I  D  NQ +C  C  +NC  C   H     KQ+Q  +   +D    ++ R    +  E  I KGE + CP C++      GCD ++C++C  +IC++T+  RWGP G GD SGGC+C +NGIKC+  C  CH
Sbjct: 1820 CPICFGAFQPYEGIVLRDCLHSFCKQCLISTIQYSEDAAIRCPYSDA---VYSCESVIQQREIKALVSKELYEAHLAKSIQQAESTIDNTFHCRTPNCRGWCIYEDNVNQFKCPVCRIVNCLTCRVIHDGLDCKQYQ--DRMNSDCDTNLEARRTKAMLQE-MIEKGEALSCPTCQVIVMKKWGCDWLKCSMCKTEICWVTRGHRWGPAGKGDTSGGCRCGINGIKCHPKCNYCH 2048

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
Match: A0A182U716 (Uncharacterized protein OS=Anopheles melas OX=34690 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.369e-31
Identity = 78/235 (33.19%), Postives = 116/235 (49.36%), Query Frame = 3

Query:  168 CPVCESP-ENIESII--GCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            CP+C    +  E I+   C H  C+ CL   I  +     RCP+ +    +  C  +IQ  +   ++ KE + A   K +       DN + C   NC+ + I  D  NQ +C  C  +NC  C   H     KQ+Q  +   +D    ++ R    +  E  I KGE + CP C++      GCD ++C++C  +IC++T+  RWGP G GD SGGC+C VNGIKC+  C  CH
Sbjct: 1793 CPICFGAFQPYEGIVLRDCLHSFCKQCLISTIQYSEDAAIRCPYSDA---VYSCESVIQQREIKALVSKELYEAHLAKSIQQAESTIDNTFHCRTPNCRGWCIYEDNVNQFKCPVCRIVNCLTCRVIHDGLDCKQYQ--DRMNSDCDTNLEARRTKAMLQE-MIEKGEALNCPTCQVIVMKKWGCDWLKCSMCKTEICWVTRGHRWGPAGKGDTSGGCRCGVNGIKCHPKCNYCH 2021

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
Match: rbck1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:NCBI gene;Acc:103044240])

HSP 1 Score: 128.642 bits (322), Expect = 3.661e-33
Identity = 85/233 (36.48%), Postives = 117/233 (50.21%), Query Frame = 3

Query:  165 ICPVCESPENIESIIGCNHHCCRSCLEQHILL-TTYPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHK-----QHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
             CPV   P    ++  C H  CR CL+Q I+  T    +CP+ +       C   +QD +   +L  E +  F   RL       +N Y C   +C  + I  D  N+  C  CG  NC +C A HK     ++Q      A+N    K    M    E  +T GE MYCPKCK+  +   GCD + C +C  +IC++TKQARWGP G GD SGGC+C VNG+ C+  C++CH
Sbjct:  309 FCPVM--PGEGATLRECLHSFCRECLKQTIVNCTDAEVQCPYRDDE---YACAYTLQDREIKTLLSAEEYQKFEELRLSIAESRSENSYHCKTPDCGGWCIFEDDVNEFICDSCGEKNCLLCKAIHKDMNCKEYQDDLRIRAENDTAAKKTTEML---EMLVTNGEAMYCPKCKVIVQKKDGCDWICCLMCKTEICWVTKQARWGPLGNGDTSGGCRCRVNGVLCHPRCQNCH 533

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
Match: rbck1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:NCBI gene;Acc:103044240])

HSP 1 Score: 128.257 bits (321), Expect = 3.793e-33
Identity = 85/233 (36.48%), Postives = 117/233 (50.21%), Query Frame = 3

Query:  165 ICPVCESPENIESIIGCNHHCCRSCLEQHILL-TTYPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHK-----QHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
             CPV   P    ++  C H  CR CL+Q I+  T    +CP+ +       C   +QD +   +L  E +  F   RL       +N Y C   +C  + I  D  N+  C  CG  NC +C A HK     ++Q      A+N    K    M    E  +T GE MYCPKCK+  +   GCD + C +C  +IC++TKQARWGP G GD SGGC+C VNG+ C+  C++CH
Sbjct:  293 FCPVM--PGEGATLRECLHSFCRECLKQTIVNCTDAEVQCPYRDDE---YACAYTLQDREIKTLLSAEEYQKFEELRLSIAESRSENSYHCKTPDCGGWCIFEDDVNEFICDSCGEKNCLLCKAIHKDMNCKEYQDDLRIRAENDTAAKKTTEML---EMLVTNGEAMYCPKCKVIVQKKDGCDWICCLMCKTEICWVTKQARWGPLGNGDTSGGCRCRVNGVLCHPRCQNCH 517

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
Match: rbck1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:NCBI gene;Acc:103044240])

HSP 1 Score: 128.642 bits (322), Expect = 4.538e-33
Identity = 85/233 (36.48%), Postives = 117/233 (50.21%), Query Frame = 3

Query:  165 ICPVCESPENIESIIGCNHHCCRSCLEQHILL-TTYPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHK-----QHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
             CPV   P    ++  C H  CR CL+Q I+  T    +CP+ +       C   +QD +   +L  E +  F   RL       +N Y C   +C  + I  D  N+  C  CG  NC +C A HK     ++Q      A+N    K    M    E  +T GE MYCPKCK+  +   GCD + C +C  +IC++TKQARWGP G GD SGGC+C VNG+ C+  C++CH
Sbjct:  323 FCPVM--PGEGATLRECLHSFCRECLKQTIVNCTDAEVQCPYRDDE---YACAYTLQDREIKTLLSAEEYQKFEELRLSIAESRSENSYHCKTPDCGGWCIFEDDVNEFICDSCGEKNCLLCKAIHKDMNCKEYQDDLRIRAENDTAAKKTTEML---EMLVTNGEAMYCPKCKVIVQKKDGCDWICCLMCKTEICWVTKQARWGPLGNGDTSGGCRCRVNGVLCHPRCQNCH 547

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
Match: shrprbck1r (ranBP-type and C3HC4-type zinc finger-containing protein 1-like [Source:NCBI gene;Acc:103029459])

HSP 1 Score: 90.1225 bits (222), Expect = 1.266e-19
Identity = 73/235 (31.06%), Postives = 116/235 (49.36%), Query Frame = 3

Query:  162 RICPVCESPENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQT-CEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            RIC +   P     +  C H  CR CL   ILL+  P   CP+ +       C C++Q+ +   ++  E +  + ++ L       +  Y C   +C  + +  D  N   C  C   NC +C A H     KQ+Q      A ++    + R+L+K      +  GE M+CP+C +  +  +GCD +RC +C  +IC++T+  RWGP G GD SGGC+C VN  +C+  C++CH
Sbjct:  498 RICYLQLQPGEGVLLRECLHCFCRECLRSVILLSEDPQVACPYRDEA---YACDCVLQEREIRALVSGEEYERWLQRGLSVAESRCEGSYHCATTDCPGWCVYEDTVNTFHCPVCTKHNCLLCKAIHEGMNCKQYQDDLAARAINDTAARRTRDLLKTL----VRSGEAMHCPQCGIIVQKKEGCDWLRCTVCHTEICWVTRGPRWGPGGPGDTSGGCRCNVNKQRCHPKCQNCH 725

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
Match: shrprbck1r (ranBP-type and C3HC4-type zinc finger-containing protein 1-like [Source:NCBI gene;Acc:103029459])

HSP 1 Score: 80.8777 bits (198), Expect = 1.382e-16
Identity = 59/208 (28.37%), Postives = 97/208 (46.63%), Query Frame = 3

Query:  162 RICPVCESPENIESIIGCNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENC-KFSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQT-CEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGP 761
            RIC +   P     +  C H  CR CL   ILL+  P   CP+ +       C C++Q+ +   ++  E +  + ++ L       +  Y C   +C  + +  D  N   C  C   NC +C A H     KQ+Q      A ++    + R+L+K      +  GE M+CP+C +  +  +GCD +RC +C  +IC++T+  RWGP
Sbjct:  469 RICYLQLQPGEGVLLRECLHCFCRECLRSVILLSEDPQVACPYRDE---AYACDCVLQEREIRALVSGEEYERWLQRGLSVAESRCEGSYHCATTDCPGWCVYEDTVNTFHCPVCTKHNCLLCKAIHEGMNCKQYQDDLAARAINDTAARRTRDLLKTL----VRSGEAMHCPQCGIIVQKKEGCDWLRCTVCHTEICWVTRGPRWGP 669

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Sea Lamprey
Match: RBCK1 (RANBP2-type and C3HC4-type zinc finger containing 1 [Source:HGNC Symbol;Acc:HGNC:15864])

HSP 1 Score: 90.1225 bits (222), Expect = 1.838e-20
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 3

Query:  489 CVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C  C   NC  C A H     +++Q      +DN +     NLM    +  +  G+ M+CP CK+  +   GCD + C+IC  +IC++TK ARWGP G GD SGGC+C +N   C+ +C +CH
Sbjct:  401 CPICKKSNCLTCKAIHEGMDCQEYQDDLKLRSDNDQAAMQTNLML---QTMVQTGDAMHCPTCKVIVQKKDGCDWICCSICKTEICWVTKGARWGPNGTGDTSGGCQCRINDRMCHPDCMNCH 520

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Nematostella
Match: EDO39228 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAP2])

HSP 1 Score: 122.094 bits (305), Expect = 2.607e-33
Identity = 76/219 (34.70%), Postives = 107/219 (48.86%), Query Frame = 3

Query:  213 CNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNL-------MKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C H  C  CL +HI   T P  +CP+ +       C  II   +   +L +E+   F  + L        N + C   NC  + +  D  N   C  C  +NC  C A H     C  +  D    I+ R L        +LY ED I KG+ M CP+C++      GCD +RC++C ++IC+ T+  RWGPQG GD + GCKC V G KC+ NC++CH
Sbjct:   30 CLHRFCIDCLREHIRNCTDPEVQCPYQDE---QFACHFIITAQEIKALLSEEDFNKFLNRSLATAESQAANSFHCKTPNCPGWCLYEDNVNTFHCEVCSKVNCLTCKAIHFPEMNCREYQQD----IQRRALNDDAAKQTQLYLEDMIKKGDAMRCPQCQIILLKKDGCDWMRCSMCRMEICWATRGPRWGPQGVGDTTAGCKCRVGGRKCHPNCRNCH 241

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Medaka
Match: rbck1 (ranBP-type and C3HC4-type zinc finger-containing protein 1 [Source:NCBI gene;Acc:101166217])

HSP 1 Score: 107.457 bits (267), Expect = 1.216e-25
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 3

Query:  315 CPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCK-FSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAAD---NPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C   + D +  ++L +E H  F   RL       ++ + C   NC+ + I  D  N+  C  C  +NC +C A HK    C+ +  D     +  K     K   E  +  GE M CP+C +  +   GCD + C +C  +IC++TKQARWGP G GD SGGC+C VN   C+ NC++CH
Sbjct:  340 CESKLLDREIKELLTEEEHQRFLELRLSIAESRSEHSFHCQTPNCRGWCIYEDEVNEFHCDLCLEVNCLLCRAIHKD-MNCKDYQDDLRIRAQNDKAAQQTKQMLESMLQNGEAMNCPRCAIIVQKKDGCDWICCLMCKTEICWVTKQARWGPNGPGDTSGGCRCRVNNQPCHPNCQNCH 518

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Medaka
Match: shrprbck1r (ranBP-type and C3HC4-type zinc finger-containing protein 1 [Source:NCBI gene;Acc:101169745])

HSP 1 Score: 105.916 bits (263), Expect = 5.434e-25
Identity = 71/219 (32.42%), Postives = 107/219 (48.86%), Query Frame = 3

Query:  213 CNHHCCRSCLEQHILLTTYPP-RCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENC-KFSIKRDGNNQQECVRCGTINCYICGAFH-----KQHQTCEMWAADNPEIIKGRN--LMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            C H  CR CL   I+L+  P   CP+ +       C  ++Q+ +   ++  E +  + ++ L       +  Y C   +C  + +  D  N   C  C   NC IC A H     KQ+Q      A N    +     LM L     +  GE MYCP+C +  +   GCD +RC +C ++IC++T+  RWGP+G GD SGGC+C VN  KC+  C++CH
Sbjct:  499 CLHCFCRECLRSVIMLSEEPEVSCPYRDD---AYSCDGVLQEREIKALVSAEEYERWLQRGLSMAESRCEGSYHCATPDCLGWCVYEDTVNVFHCPVCRKHNCLICKAIHEGMNCKQYQDDLAVRAINDSAARRTTHLLMTL-----VQSGEAMYCPQCGIIVQKRDGCDWLRCTVCHIEICWVTRGPRWGPKGPGDTSGGCRCNVNNQKCHPKCQNCH 709

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Medaka
Match: CUL7 (cullin 9 [Source:NCBI gene;Acc:101168890])

HSP 1 Score: 51.6026 bits (122), Expect = 7.707e-7
Identity = 57/214 (26.64%), Postives = 89/214 (41.59%), Query Frame = 3

Query:  150 LTKKRICPVCESPE--NIESI--IGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCPCIIQDNQC-------FDILEKENHVAFNRKRLMHRYMN-EDNLYPCYG-ENC-KFSIKRDGNNQQECVRCGTINCYICGAFHKQH--QTCEMWAA--DNPEIIKGRNLMKLYNEDK-ITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICF 734
            L+    CPVC  P   ++E +  + C H+CCRSC +++  LT    +   MN       C C I D Q          IL  ++ VA     L+  Y+    NL  C   + C +   K +  N   C +C   +C+ C  F + H   +C   +   D+    +G   M +  + K + K     CP C+   E  +GC  + CA C    C+
Sbjct: 2185 LSPAATCPVCLGPRTGSVEPVPSLSCLHYCCRSCWQEY--LTARIEQNLVMN-------CNCPITDCQAQPTSHFFLSILTDKDTVAKYENALLRGYVECCSNLTWCTNPQGCDQILCKENMGNTGTCSKCCWSSCFSCN-FPEAHYPASCSHMSQWMDDGGFYEG---MSMEAQSKHLAKLISKRCPSCQAQIEKNEGCLHMTCAKCNHGFCW 2385

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Medaka
Match: CUL7 (cullin 9 [Source:NCBI gene;Acc:101168890])

HSP 1 Score: 51.6026 bits (122), Expect = 7.843e-7
Identity = 57/214 (26.64%), Postives = 89/214 (41.59%), Query Frame = 3

Query:  150 LTKKRICPVCESPE--NIESI--IGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCPCIIQDNQC-------FDILEKENHVAFNRKRLMHRYMN-EDNLYPCYG-ENC-KFSIKRDGNNQQECVRCGTINCYICGAFHKQH--QTCEMWAA--DNPEIIKGRNLMKLYNEDK-ITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICF 734
            L+    CPVC  P   ++E +  + C H+CCRSC +++  LT    +   MN       C C I D Q          IL  ++ VA     L+  Y+    NL  C   + C +   K +  N   C +C   +C+ C  F + H   +C   +   D+    +G   M +  + K + K     CP C+   E  +GC  + CA C    C+
Sbjct: 2175 LSPAATCPVCLGPRTGSVEPVPSLSCLHYCCRSCWQEY--LTARIEQNLVMN-------CNCPITDCQAQPTSHFFLSILTDKDTVAKYENALLRGYVECCSNLTWCTNPQGCDQILCKENMGNTGTCSKCCWSSCFSCN-FPEAHYPASCSHMSQWMDDGGFYEG---MSMEAQSKHLAKLISKRCPSCQAQIEKNEGCLHMTCAKCNHGFCW 2375

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST
Match: SMESG000038117.1 (SMESG000038117.1)

HSP 1 Score: 473.781 bits (1218), Expect = 7.482e-171
Identity = 231/242 (95.45%), Postives = 236/242 (97.52%), Query Frame = 3

Query:  117 MKSLKDLENFLLTKKRICPVCESPENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 842
            MKSLK LENFLLTKKRICPVC+SPENIESIIGCNH+CCRSCLEQHILLTTYPPRCPFM VFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLM RYMNEDNLYPCYGENCKFSIKR+GNNQQECVRCGTINCYICGA HKQHQTCEMWAADNPEIIKGRNL+KLYNEDKITKGEGM CPKCK+FFEVTQGCDAVRCA CLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH
Sbjct:    1 MKSLKYLENFLLTKKRICPVCDSPENIESIIGCNHYCCRSCLEQHILLTTYPPRCPFMYVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMRRYMNEDNLYPCYGENCKFSIKRNGNNQQECVRCGTINCYICGAVHKQHQTCEMWAADNPEIIKGRNLLKLYNEDKITKGEGMCCPKCKIFFEVTQGCDAVRCAFCLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH 242

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST
Match: SMESG000038116.1 (SMESG000038116.1)

HSP 1 Score: 152.91 bits (385), Expect = 9.433e-45
Identity = 90/241 (37.34%), Postives = 129/241 (53.53%), Query Frame = 3

Query:  132 DLENFLLTKKRICPVCESPENIESIIGCNHHCCRSCLEQHILL-TTYPPR--CPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIK-CNENCKSCH 842
            +LEN     K++C  C        I G  +  CR+CL +HI +   YP +  C   N           + D  C+ IL K++H A+NR R+ HR +   NL+ CY  NC  +++   + Q  C  C  +NCY C A H++ +TC  W   N   I+ R   +L NE+KI K + +YCP C +F     GCD + C +C  +ICF TK +RWGP G GD S GCKC ++G+  C+ NC +CH
Sbjct:    2 ELENI----KQLCTTCCKYSKTCKIEGRINKFCRNCLREHIKICKMYPVKLSCFLENETTSNFE----LSDYICYQILSKKDHAAYNRLRVDHRVIKIPNLHRCYNLNCSGTVRLSDSRQIICNLCKVLNCYDCKAVHEKGETCNTWKEKNTTEIQFRIEQQLQNEEKIRKNQAIYCPSCGIFIGFIGGCDWICCPVCKHEICFRTKMSRWGPGGRGDTSDGCKCKIDGVTLCHPNCNNCH 234

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST
Match: SMESG000069292.1 (SMESG000069292.1)

HSP 1 Score: 117.472 bits (293), Expect = 7.829e-30
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 3

Query:  210 GCNHHCCRSCLEQHILLTT-YPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQ-ECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSC 839
             C H  CR CL  HI  T   P  CPF         C   ++D++  ++LE ++   +N+K L   + N      C   NC+  I+  GN +  EC +C ++NC  C A H      E    +NP        +    +  I + E M CPKCK+    T GC+ ++C IC  ++C++ +  RWGP+G GD+SGGCKCMV G  C+  C  C
Sbjct:  198 NCFHCICRDCLCDHIKKTQQIPIPCPF--------NCKFFLEDSEIREVLEDDDQTIYNKKMLNLAFPNLHKAVYCQSPNCENLIEVYGNVKSWECSKCQSVNCLTCNAIHPTMNCTEYSKINNP--------LDEMTKKMIERKELMQCPKCKIIISKTSGCNWIKCNICQTELCWILQTYRWGPKGPGDVSGGCKCMVGGKFCHPECIGC 393

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST
Match: SMESG000003670.1 (SMESG000003670.1)

HSP 1 Score: 113.235 bits (282), Expect = 1.674e-29
Identity = 76/229 (33.19%), Postives = 107/229 (46.72%), Query Frame = 3

Query:  168 CPVC-ESPENIESIIGCNHHCCRSCLEQHILL-TTYPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIK---RDGNNQQECVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSC 839
            C +C  SP    +   C H CC  C        ++YP  C           C   + D +C   L K N   + R +     + +  LY CY  NCK  I+    D  N+  C  C  INC  C A H + ++C++W  +N + +K R         K+     MYC +C  F E   GC  V+C +C   +CF+T++ARWGP+G+GD SGGCKC     KC+ NC  C
Sbjct:    3 CEICYNSPAKFRT--HCGHKCCVDCFNCIFECNSSYPVEC---------FGCHRFLADKECIKYLNKGNRKKYLRHKSFIDDLVDKFLYKCYKINCKGEIRYFESDRLNKFNCPECHQINCVRCEAIHGKDESCKIWRQNNQDRVKER----AERYGKLQNNCAMYCVRCGTFCERVGGCYGVKCGVCKTSLCFITQKARWGPEGYGDNSGGCKCSARN-KCHANCIGC 215

[Close]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST
Match: SMESG000044481.1 (SMESG000044481.1)

HSP 1 Score: 109.383 bits (272), Expect = 2.532e-28
Identity = 71/233 (30.47%), Postives = 107/233 (45.92%), Query Frame = 3

Query:  165 ICPVCESPENIESIIGCNHHCCRSCLEQHILLTTYPPRCPFMNVFPLLLPCPC---IIQDNQC-FDILEKENHVAFNRKRLMHRYMNEDNLYPCYGENCKFSIKRDGNNQQE--CVRCGTINCYICGAFHKQHQTCEMWAADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAICLLDICFLTKQARWGPQGFGDISGGCKCMVNG-IKCNENCKSCH 842
            IC  C+S   + +   C H  C SC   +       P           LPCP     + D  C F++ ++ +   +   R  ++ + + N Y CY E+C    + DG+  +   C  C    C  C A H  ++TC+ W  +N  ++K R  M    + ++  G GM C  C  F    + CD + C  C L +CF  K  RWGP+G GD+SGGC+C  +G   C+  CK CH
Sbjct:    3 ICFYCDSQVELITT-NCGHEICHSCFGNYFQAVRIHP-----------LPCPVCSKSLSDEYCEFNLGQRVDD--YREVRAHYQLIKDKNKYQCYNEDCTEIFQNDGSEIESFICSGCNKKTCLKCRALHTANETCDDWERNNEGLVKSRKYMAKDMKRQVKCGHGMTCEDCGCFIIKLENCDGILCPRCKLPLCFKKKMRRWGPKGVGDLSGGCRCYWDGKTPCHPRCKGCH 221

The following BLAST results are available for this feature:

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Celegans
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Fly
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Zebrafish
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Mouse
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Sea Lamprey
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Yeast
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Nematostella
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Medaka
BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBCK1	5.718e-19	29.92	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
RBCK1	6.599e-19	30.33	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
RBCK1	8.191e-17	35.62	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
RBCK1	8.191e-17	35.62	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
CUL9	4.448e-6	25.00	cullin 9 [Source:HGNC Symbol;Acc:HGNC:15982]	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2


Match Name	E-value	Identity	Description
C17H11.6	9.387e-6	25.81	RBR-type E3 ubiquitin transferase [Source:UniProt...	[more]
C17H11.6	9.387e-6	25.81	RBR-type E3 ubiquitin transferase [Source:UniProt...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4


Match Name	E-value	Identity	Description
LUBEL	2.673e-8	21.34	gene:FBgn0031857 transcript:FBtr0331216	[more]
LUBEL	2.893e-8	21.34	gene:FBgn0031857 transcript:FBtr0331220	[more]
LUBEL	2.894e-8	21.34	gene:FBgn0031857 transcript:FBtr0331218	[more]
LUBEL	3.160e-8	21.34	gene:FBgn0031857 transcript:FBtr0331221	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rbck1	1.901e-27	34.86	RanBP-type and C3HC4-type zinc finger containing 1...	[more]
rbck1	1.901e-27	34.86	RanBP-type and C3HC4-type zinc finger containing 1...	[more]
shrprbck1r	4.196e-26	31.36	sharpin and rbck1 related [Source:NCBI gene;Acc:56...	[more]
rbck1	1.528e-24	36.14	RanBP-type and C3HC4-type zinc finger containing 1...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSXETT00000033448.1	3.142e-28	32.26	RanBP-type and C3HC4-type zinc finger containing 1...	[more]
cul9	2.289e-6	25.85	cullin 9 [Source:NCBI gene;Acc:100145662]	[more]
cul9	3.402e-6	25.85	cullin 9 [Source:NCBI gene;Acc:100145662]	[more]
cul9	4.321e-6	25.85	cullin 9 [Source:NCBI gene;Acc:100145662]	[more]
cul9	4.538e-6	25.85	cullin 9 [Source:NCBI gene;Acc:100145662]	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2


Match Name	E-value	Identity	Description
Rbck1	2.297e-21	30.83	RanBP-type and C3HC4-type zinc finger containing 1...	[more]
Rbck1	2.297e-21	30.83	RanBP-type and C3HC4-type zinc finger containing 1...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|A9JTG5\|HOIL1_DANRE	3.167e-25	31.36	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
sp\|E6ZIJ1\|HOIL1_DICLA	1.671e-23	30.64	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
sp\|Q9WUB0\|HOIL1_MOUSE	1.607e-20	30.83	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
sp\|Q62921\|HOIL1_RAT	7.606e-20	30.83	RanBP-type and C3HC4-type zinc finger-containing p...	[more]
sp\|Q9BYM8\|HOIL1_HUMAN	3.169e-18	30.33	RanBP-type and C3HC4-type zinc finger-containing p...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
W5JD78	1.582e-33	34.04	Ubiquitin conjugating enzyme 7 interacting protein...	[more]
A0A084VMC3	1.080e-32	33.62	AGAP009239-PA-like protein OS=Anopheles sinensis O...	[more]
A0A182KU91	1.111e-31	33.19	Uncharacterized protein OS=Anopheles coluzzii OX=1...	[more]
A0A182M3Z3	1.178e-31	32.77	Uncharacterized protein OS=Anopheles culicifacies ...	[more]
A0A182U716	1.369e-31	33.19	Uncharacterized protein OS=Anopheles melas OX=3469...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbck1	3.661e-33	36.48	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
rbck1	3.793e-33	36.48	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
rbck1	4.538e-33	36.48	RANBP2-type and C3HC4-type zinc finger containing ...	[more]
shrprbck1r	1.266e-19	31.06	ranBP-type and C3HC4-type zinc finger-containing p...	[more]
shrprbck1r	1.382e-16	28.37	ranBP-type and C3HC4-type zinc finger-containing p...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
RBCK1	1.838e-20	38.21	RANBP2-type and C3HC4-type zinc finger containing ...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1


Match Name	E-value	Identity	Description
EDO39228	2.607e-33	34.70	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
rbck1	1.216e-25	35.00	ranBP-type and C3HC4-type zinc finger-containing p...	[more]
shrprbck1r	5.434e-25	32.42	ranBP-type and C3HC4-type zinc finger-containing p...	[more]
CUL7	7.707e-7	26.64	cullin 9 [Source:NCBI gene;Acc:101168890]	[more]
CUL7	7.843e-7	26.64	cullin 9 [Source:NCBI gene;Acc:101168890]	[more]

BLAST of RanBP-type and C3HC4-type zinc finger containing 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000038117.1	7.482e-171	95.45	SMESG000038117.1	[more]
SMESG000038116.1	9.433e-45	37.34	SMESG000038116.1	[more]
SMESG000069292.1	7.829e-30	33.96	SMESG000069292.1	[more]
SMESG000003670.1	1.674e-29	33.19	SMESG000003670.1	[more]
SMESG000044481.1	2.532e-28	30.47	SMESG000044481.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30009348 ID=SMED30009348|Name=RanBP-type and C3HC4-type zinc finger containing 1|organism=Schmidtea mediterranea sexual|type=transcript|length=943bp
TTAGTGGCTAAATATTAATTTTCAAACAAAATAAATCGATATATAATCTT
GTATAGGTTTGACCTACATTTCTTTACTTATTCCAAGAATATTAAATTGT
ATGTTACATTTGGCAAATGAAAAGTCTAAAAGATTTGGAAAACTTTTTGT
TAACAAAAAAACGAATTTGTCCTGTGTGTGAGAGTCCAGAGAACATAGAA
TCGATCATTGGATGTAATCATCACTGTTGTCGAAGTTGCCTCGAACAACA
TATACTATTGACAACATATCCACCTCGATGCCCATTTATGAATGTGTTTC
CTCTACTACTTCCATGTCCGTGTATTATACAGGATAATCAATGCTTTGAC
ATTTTAGAAAAAGAAAATCATGTCGCCTTTAACCGGAAACGTCTCATGCA
TCGATATATGAATGAGGATAATTTGTACCCGTGCTACGGGGAGAACTGTA
AATTCTCAATCAAAAGGGATGGCAACAATCAGCAAGAATGCGTGAGATGC
GGCACAATTAACTGTTACATTTGCGGTGCGTTTCATAAACAGCATCAAAC
CTGTGAAATGTGGGCAGCAGACAACCCGGAAATTATCAAAGGCAGAAATT
TGATGAAATTATATAATGAAGACAAAATCACCAAGGGCGAAGGAATGTAC
TGTCCGAAATGTAAAATGTTTTTCGAAGTAACTCAAGGATGCGACGCAGT
GAGATGCGCAATTTGTCTACTGGACATATGTTTTCTCACCAAGCAAGCCC
GTTGGGGGCCTCAGGGTTTCGGTGACATTTCTGGCGGCTGTAAATGTATG
GTAAACGGGATTAAATGCAACGAGAATTGTAAATCCTGCCACTAAACCTT
CAGAATTTTGATATTTATTCCGAAAGAATTTACTTTCTTTATTGTTTTGT
TTTCATTGAAATTTAGAATTGACAAAAAGTATTTTATATCGAC

protein sequence of SMED30009348-orf-1

>SMED30009348-orf-1 ID=SMED30009348-orf-1|Name=SMED30009348-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=243bp
MKSLKDLENFLLTKKRICPVCESPENIESIIGCNHHCCRSCLEQHILLTT
YPPRCPFMNVFPLLLPCPCIIQDNQCFDILEKENHVAFNRKRLMHRYMNE
DNLYPCYGENCKFSIKRDGNNQQECVRCGTINCYICGAFHKQHQTCEMWA
ADNPEIIKGRNLMKLYNEDKITKGEGMYCPKCKMFFEVTQGCDAVRCAIC
LLDICFLTKQARWGPQGFGDISGGCKCMVNGIKCNENCKSCH*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **biological process**
Term	Definition
GO:0048701	embryonic cranial skeleton morphogenesis

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000034	epidermis
PLANA:0000099	neuron
PLANA:0003117	parapharyngeal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR026261	RBCK1/SHARPIN
IPR001841	Znf_RING

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026261	RanBP-type and C3HC4-type zinc finger-containing protein 1/SHARPIN	PANTHER	PTHR22770:SF35	RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1-RELATED	coord: 16..242
None	No IPR available	PANTHER	PTHR22770	UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED	coord: 16..242
None	No IPR available	PROSITE	PS51873	TRIAD	coord: 14..238 score: 17.689
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 175..216
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 90..151
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 18..56 score: 9.037

Main menu

RanBP-type and C3HC4-type zinc finger containing 1

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 4

Owlery

blazegraph-runner